Clone Information

BLAST Search Result

Clone Name	bags30e06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_463921.1\| Oryza sativa (japonica cultivar-group), mRNA	343	4e-91
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	343	4e-91
3	dbj\|AP004078.3\| Oryza sativa (japonica cultivar-group) genomic D...	343	4e-91
4	dbj\|AK109567.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	1e-88
5	gb\|AC152493.3\| Rhinolophus ferrumequinum clone VMRC7-244O22, com...	42	2.1
6	gb\|AC183752.3\| Rhinolophus ferrumequinum clone VMRC7-380K18, com...	42	2.1
7	gb\|AC083757.6\| Homo sapiens chromosome , clone RP11-373N8, compl...	42	2.1
8	gb\|DP000028.1\| Rhinolophus ferrumequinum target 1 genomic scaffold	42	2.1
9	gb\|AC135726.6\| Homo sapiens chromosome 17, clone CTC-830I3, comp...	42	2.1
10	gb\|AE017125.1\| Helicobacter hepaticus ATCC 51449, complete genome	42	2.1
11	gb\|AC131721.4\| Mus musculus BAC clone RP23-142L24 from chromosom...	40	8.3
12	gb\|AC127547.2\| Mus musculus BAC clone RP24-498C13 from chromosom...	40	8.3
13	gb\|AC113123.8\| Mus musculus chromosome 8, clone RP23-349O15, com...	40	8.3
14	gb\|AC167554.9\| Mus musculus chromosome 15, clone RP24-281M24, co...	40	8.3
15	emb\|AL445067.1\|TACID5 Thermoplasma acidophilum complete genome; ...	40	8.3
16	emb\|CR937046.1\|PT147K15 Pan troglodytes chromosome 11 BAC PTB-14...	40	8.3
17	emb\|AL662786.5\| Mouse DNA sequence from clone RP23-340O10 on chr...	40	8.3
18	gb\|AC102803.3\| Homo sapiens chromosome 18, clone RP11-454J3, com...	40	8.3
19	emb\|BX004888.9\| Zebrafish DNA sequence from clone DKEY-8F21 in l...	40	8.3
20	gb\|AE016820.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	8.3
21	gb\|AC108858.16\| Mus musculus chromosome 15, clone RP24-390C21, c...	40	8.3
22	gb\|AC010987.9\| Homo sapiens BAC clone RP11-553M15 from 2, comple...	40	8.3
23	gb\|AC074176.5\|AC074176 Arabidopsis thaliana chromosome 1 BAC T2H...	40	8.3
24	gb\|AC112510.9\| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cance...	40	8.3
25	gb\|AC137673.2\| Homo sapiens chromosome 3 clone CTD-2195M5, compl...	40	8.3
26	ref\|NM_212063.1\| Eremothecium gossypii AGR335Cp (AGR335C), mRNA	40	8.3
27	emb\|BX255931.5\| Zebrafish DNA sequence from clone CH211-195B2 in...	40	8.3
28	emb\|AL929135.9\| Zebrafish DNA sequence from clone CH211-125A22, ...	40	8.3

>ref|XM_463921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2182

 Score =  343 bits (173), Expect = 4e-91
 Identities = 446/537 (83%)
 Strand = Plus / Plus

                                                                        
Query: 39   tgctctcgatgttgaagagggatcttgtgcccgatgatgaatgctacattgccatcgtag 98
            ||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |  | |
Sbjct: 1214 tgctctcaatgttgaagcgggatcttgtccctgatgatgaatgctacattgccgtgattg 1273

                                                                        
Query: 99   aggggttttcgcagaaaggaaggatgaagattgcatgggaggtccttcacaggatgctga 158
            | |||||||| ||||  |||||||||||| |||||||||| | | | ||||||||| |||
Sbjct: 1274 aagggttttcacagaggggaaggatgaagtttgcatgggaagccttgcacaggatgttga 1333

                                                                        
Query: 159  acagtggcctccggcctagcacaagcacgttccactctgttcttttaggacttttgaaaa 218
            | || || || ||||| |||||||| || || ||||| |||||||| || |||||||| |
Sbjct: 1334 atagcggtcttcggccaagcacaagtacttttcactcggttcttttggggcttttgaaca 1393

                                                                        
Query: 219  aagaaggttgtgcaaaagaagctgcagatttgattgagataatgctagagaggaagatcc 278
            |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 1394 aagatggttgtgcaaaagaagcagctgatttgattgagataatgctagagaggaagattc 1453

                                                                        
Query: 279  gccagaatttggatctttcgaccaatacgattgacgcattgttcaaaagcagcctaaatg 338
            |||| ||| | ||||||||||| |||  | | ||  |||||||||  | || ||||||||
Sbjct: 1454 gccaaaatgttgatctttcgacaaatttggtagatacattgttcaggaacaacctaaatg 1513

                                                                        
Query: 339  accgtgcctacaaagtcatcacatccctatatgaccaaggctattacatcaagatggaaa 398
            ||||||| |||||  |  | ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1514 accgtgcttacaagattgttacatctctatatgaccatggctattacatcaagatggaaa 1573

                                                                        
Query: 399  aactaatcggggacctctgcgaggaaaagaagttcatagaggcagccgagcttaccttgt 458
            |  ||||||   |||| ||||||||||||||||||||||| || || ||  |||| ||||
Sbjct: 1574 agttaatcgcaaacctttgcgaggaaaagaagttcatagaagctgcagattttactttgt 1633

                                                                        
Query: 459  ttagcttgcagaagcatcatgatttgggtgtgtcaatatccagtacggttctggatggcc 518
            |||||||| |||||  |||  |||| |||||  | ||  | || | |||||||||||| |
Sbjct: 1634 ttagcttggagaagtctcagaattttggtgtagccattccaagcatggttctggatggtc 1693

                                                                     
Query: 519  tttgcacaactggtagagcctcagacgcgttccggcttttctacgaactcatcgaga 575
            ||||||  ||||||||||| ||||| || |||||||| ||||| |||||||| ||||
Sbjct: 1694 tttgcatgactggtagagcttcagaagcattccggctgttctatgaactcattgaga 1750

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  343 bits (173), Expect = 4e-91
 Identities = 446/537 (83%)
 Strand = Plus / Plus

                                                                           
Query: 39      tgctctcgatgttgaagagggatcttgtgcccgatgatgaatgctacattgccatcgtag 98
               ||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |  | |
Sbjct: 1155887 tgctctcaatgttgaagcgggatcttgtccctgatgatgaatgctacattgccgtgattg 1155946

                                                                           
Query: 99      aggggttttcgcagaaaggaaggatgaagattgcatgggaggtccttcacaggatgctga 158
               | |||||||| ||||  |||||||||||| |||||||||| | | | ||||||||| |||
Sbjct: 1155947 aagggttttcacagaggggaaggatgaagtttgcatgggaagccttgcacaggatgttga 1156006

                                                                           
Query: 159     acagtggcctccggcctagcacaagcacgttccactctgttcttttaggacttttgaaaa 218
               | || || || ||||| |||||||| || || ||||| |||||||| || |||||||| |
Sbjct: 1156007 atagcggtcttcggccaagcacaagtacttttcactcggttcttttggggcttttgaaca 1156066

                                                                           
Query: 219     aagaaggttgtgcaaaagaagctgcagatttgattgagataatgctagagaggaagatcc 278
               |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 1156067 aagatggttgtgcaaaagaagcagctgatttgattgagataatgctagagaggaagattc 1156126

                                                                           
Query: 279     gccagaatttggatctttcgaccaatacgattgacgcattgttcaaaagcagcctaaatg 338
               |||| ||| | ||||||||||| |||  | | ||  |||||||||  | || ||||||||
Sbjct: 1156127 gccaaaatgttgatctttcgacaaatttggtagatacattgttcaggaacaacctaaatg 1156186

                                                                           
Query: 339     accgtgcctacaaagtcatcacatccctatatgaccaaggctattacatcaagatggaaa 398
               ||||||| |||||  |  | ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1156187 accgtgcttacaagattgttacatctctatatgaccatggctattacatcaagatggaaa 1156246

                                                                           
Query: 399     aactaatcggggacctctgcgaggaaaagaagttcatagaggcagccgagcttaccttgt 458
               |  ||||||   |||| ||||||||||||||||||||||| || || ||  |||| ||||
Sbjct: 1156247 agttaatcgcaaacctttgcgaggaaaagaagttcatagaagctgcagattttactttgt 1156306

                                                                           
Query: 459     ttagcttgcagaagcatcatgatttgggtgtgtcaatatccagtacggttctggatggcc 518
               |||||||| |||||  |||  |||| |||||  | ||  | || | |||||||||||| |
Sbjct: 1156307 ttagcttggagaagtctcagaattttggtgtagccattccaagcatggttctggatggtc 1156366

                                                                        
Query: 519     tttgcacaactggtagagcctcagacgcgttccggcttttctacgaactcatcgaga 575
               ||||||  ||||||||||| ||||| || |||||||| ||||| |||||||| ||||
Sbjct: 1156367 tttgcatgactggtagagcttcagaagcattccggctgttctatgaactcattgaga 1156423

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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1020_C02
          Length = 124578

 Score =  343 bits (173), Expect = 4e-91
 Identities = 446/537 (83%)
 Strand = Plus / Plus

                                                                          
Query: 39     tgctctcgatgttgaagagggatcttgtgcccgatgatgaatgctacattgccatcgtag 98
              ||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |  | |
Sbjct: 108411 tgctctcaatgttgaagcgggatcttgtccctgatgatgaatgctacattgccgtgattg 108470

                                                                          
Query: 99     aggggttttcgcagaaaggaaggatgaagattgcatgggaggtccttcacaggatgctga 158
              | |||||||| ||||  |||||||||||| |||||||||| | | | ||||||||| |||
Sbjct: 108471 aagggttttcacagaggggaaggatgaagtttgcatgggaagccttgcacaggatgttga 108530

                                                                          
Query: 159    acagtggcctccggcctagcacaagcacgttccactctgttcttttaggacttttgaaaa 218
              | || || || ||||| |||||||| || || ||||| |||||||| || |||||||| |
Sbjct: 108531 atagcggtcttcggccaagcacaagtacttttcactcggttcttttggggcttttgaaca 108590

                                                                          
Query: 219    aagaaggttgtgcaaaagaagctgcagatttgattgagataatgctagagaggaagatcc 278
              |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 108591 aagatggttgtgcaaaagaagcagctgatttgattgagataatgctagagaggaagattc 108650

                                                                          
Query: 279    gccagaatttggatctttcgaccaatacgattgacgcattgttcaaaagcagcctaaatg 338
              |||| ||| | ||||||||||| |||  | | ||  |||||||||  | || ||||||||
Sbjct: 108651 gccaaaatgttgatctttcgacaaatttggtagatacattgttcaggaacaacctaaatg 108710

                                                                          
Query: 339    accgtgcctacaaagtcatcacatccctatatgaccaaggctattacatcaagatggaaa 398
              ||||||| |||||  |  | ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 108711 accgtgcttacaagattgttacatctctatatgaccatggctattacatcaagatggaaa 108770

                                                                          
Query: 399    aactaatcggggacctctgcgaggaaaagaagttcatagaggcagccgagcttaccttgt 458
              |  ||||||   |||| ||||||||||||||||||||||| || || ||  |||| ||||
Sbjct: 108771 agttaatcgcaaacctttgcgaggaaaagaagttcatagaagctgcagattttactttgt 108830

                                                                          
Query: 459    ttagcttgcagaagcatcatgatttgggtgtgtcaatatccagtacggttctggatggcc 518
              |||||||| |||||  |||  |||| |||||  | ||  | || | |||||||||||| |
Sbjct: 108831 ttagcttggagaagtctcagaattttggtgtagccattccaagcatggttctggatggtc 108890

                                                                       
Query: 519    tttgcacaactggtagagcctcagacgcgttccggcttttctacgaactcatcgaga 575
              ||||||  ||||||||||| ||||| || |||||||| ||||| |||||||| ||||
Sbjct: 108891 tttgcatgactggtagagcttcagaagcattccggctgttctatgaactcattgaga 108947

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>dbj|AK109567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D10, full
            insert sequence
          Length = 2181

 Score =  335 bits (169), Expect = 1e-88
 Identities = 445/537 (82%)
 Strand = Plus / Plus

                                                                        
Query: 39   tgctctcgatgttgaagagggatcttgtgcccgatgatgaatgctacattgccatcgtag 98
            ||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |  | |
Sbjct: 1214 tgctctcaatgttgaagcgggatcttgtccctgatgatgaatgctacattgccgtgattg 1273

                                                                        
Query: 99   aggggttttcgcagaaaggaaggatgaagattgcatgggaggtccttcacaggatgctga 158
            | |||||||| ||||  |||||||||||| |||||||||| | | | ||||||||| |||
Sbjct: 1274 aagggttttcacagaggggaaggatgaagtttgcatgggaagccttgcacaggatgttga 1333

                                                                        
Query: 159  acagtggcctccggcctagcacaagcacgttccactctgttcttttaggacttttgaaaa 218
            | || || || ||||| |||||||| || || ||||| |||||||| || |||||||| |
Sbjct: 1334 atagcggtcttcggccaagcacaagtacttttcactcggttcttttggggcttttgaaca 1393

                                                                        
Query: 219  aagaaggttgtgcaaaagaagctgcagatttgattgagataatgctagagaggaagatcc 278
            |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 1394 aagatggttgtgcaaaagaagcagctgatttgattgagataatgctagagaggaagattc 1453

                                                                        
Query: 279  gccagaatttggatctttcgaccaatacgattgacgcattgttcaaaagcagcctaaatg 338
            |||| ||| | ||||||||||| |||  | | ||  |||||||||  | || ||||||||
Sbjct: 1454 gccaaaatgttgatctttcgacaaatttggtagatacattgttcaggaacaacctaaatg 1513

                                                                        
Query: 339  accgtgcctacaaagtcatcacatccctatatgaccaaggctattacatcaagatggaaa 398
            ||||||| |||||  |  | ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1514 accgtgcttacaagattgttacatctctatatgaccatggctattacatcaagatggaaa 1573

                                                                        
Query: 399  aactaatcggggacctctgcgaggaaaagaagttcatagaggcagccgagcttaccttgt 458
            |  ||||||   | || ||||||||||||||||||||||| || || ||  |||| ||||
Sbjct: 1574 agttaatcgcaaatctttgcgaggaaaagaagttcatagaagctgcagattttactttgt 1633

                                                                        
Query: 459  ttagcttgcagaagcatcatgatttgggtgtgtcaatatccagtacggttctggatggcc 518
            |||||||| |||||  |||  |||| |||||  | ||  | || | |||||||||||| |
Sbjct: 1634 ttagcttggagaagtctcagaattttggtgtagccattccaagcatggttctggatggtc 1693

                                                                     
Query: 519  tttgcacaactggtagagcctcagacgcgttccggcttttctacgaactcatcgaga 575
            ||||||  ||||||||||| ||||| || |||||||| ||||| |||||||| ||||
Sbjct: 1694 tttgcatgactggtagagcttcagaagcattccggctgttctatgaactcattgaga 1750

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>gb|AC152493.3| Rhinolophus ferrumequinum clone VMRC7-244O22, complete sequence
          Length = 75463

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 111   agaaaggaaggatgaagattgcatg 135
             ||||||||||||||||| |||||||
Sbjct: 58818 agaaaggaaggatgaagtttgcatg 58794

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>gb|AC183752.3| Rhinolophus ferrumequinum clone VMRC7-380K18, complete sequence
          Length = 39225

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 111   agaaaggaaggatgaagattgcatg 135
             ||||||||||||||||| |||||||
Sbjct: 15037 agaaaggaaggatgaagtttgcatg 15013

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>gb|AC083757.6| Homo sapiens chromosome , clone RP11-373N8, complete sequence
          Length = 66910

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 220   agaaggttgtgcaaaagaagctgca 244
             ||||||||| |||||||||||||||
Sbjct: 58219 agaaggttgagcaaaagaagctgca 58195

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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 111    agaaaggaaggatgaagattgcatg 135
              ||||||||||||||||| |||||||
Sbjct: 862126 agaaaggaaggatgaagtttgcatg 862102

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>gb|AC135726.6| Homo sapiens chromosome 17, clone CTC-830I3, complete sequence
          Length = 53730

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 220   agaaggttgtgcaaaagaagctgca 244
             ||||||||| |||||||||||||||
Sbjct: 16460 agaaggttgagcaaaagaagctgca 16436

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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 229     tgcaaaagaagctgcagattt 249
               |||||||||||||||||||||
Sbjct: 1028944 tgcaaaagaagctgcagattt 1028924

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>gb|AC131721.4| Mus musculus BAC clone RP23-142L24 from chromosome 15, complete sequence
          Length = 230892

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tgcagatttgattgagataa 260
              ||||||||||||||||||||
Sbjct: 153929 tgcagatttgattgagataa 153910

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>gb|AC127547.2| Mus musculus BAC clone RP24-498C13 from chromosome 8, complete sequence
          Length = 151070

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ttgaaaaaagaaggttgtgc 231
             ||||||||||||||||||||
Sbjct: 28734 ttgaaaaaagaaggttgtgc 28715

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>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence
          Length = 213829

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  ttgaaaaaagaaggttgtgc 231
            ||||||||||||||||||||
Sbjct: 2189 ttgaaaaaagaaggttgtgc 2208

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>gb|AC167554.9| Mus musculus chromosome 15, clone RP24-281M24, complete sequence
          Length = 166875

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   tgcagatttgattgagataa 260
             ||||||||||||||||||||
Sbjct: 59370 tgcagatttgattgagataa 59389

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>emb|AL445067.1|TACID5 Thermoplasma acidophilum complete genome; segment 5/5
          Length = 268356

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    gaggaaaagaagttcataga 438
              ||||||||||||||||||||
Sbjct: 163738 gaggaaaagaagttcataga 163757

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>emb|CR937046.1|PT147K15 Pan troglodytes chromosome 11 BAC PTB-147K15, complete sequence
          Length = 197298

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    ctgttcttttaggacttttg 214
              ||||||||||||||||||||
Sbjct: 123963 ctgttcttttaggacttttg 123982

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>emb|AL662786.5| Mouse DNA sequence from clone RP23-340O10 on chromosome 11, complete
             sequence
          Length = 203337

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   ggaaaagaagttcatagagg 440
             ||||||||||||||||||||
Sbjct: 73861 ggaaaagaagttcatagagg 73842

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>gb|AC102803.3| Homo sapiens chromosome 18, clone RP11-454J3, complete sequence
          Length = 212842

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    ggctattacatcaagatgga 396
              ||||||||||||||||||||
Sbjct: 180143 ggctattacatcaagatgga 180124

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>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete
              sequence
          Length = 219280

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gcagaaaggaaggatgaaga 128
              ||||||||||||||||||||
Sbjct: 212308 gcagaaaggaaggatgaaga 212327

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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
               complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 20      gaagaagggtaccagctggtgctc 43
               ||||||||||||||| ||||||||
Sbjct: 1357323 gaagaagggtaccaggtggtgctc 1357346

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>gb|AC108858.16| Mus musculus chromosome 15, clone RP24-390C21, complete sequence
          Length = 194163

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    tgcagatttgattgagataa 260
              ||||||||||||||||||||
Sbjct: 187854 tgcagatttgattgagataa 187873

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>gb|AC010987.9| Homo sapiens BAC clone RP11-553M15 from 2, complete sequence
          Length = 193319

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    ccttcacaggatgctgaaca 161
              ||||||||||||||||||||
Sbjct: 184058 ccttcacaggatgctgaaca 184077

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>gb|AC074176.5|AC074176 Arabidopsis thaliana chromosome 1 BAC T2H7 genomic sequence, complete
             sequence
          Length = 72058

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   gacttttgaaaaaagaaggt 226
             ||||||||||||||||||||
Sbjct: 36760 gacttttgaaaaaagaaggt 36779

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>gb|AC112510.9| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 192749

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 471   agcatcatgatttgggtgtgtcaa 494
             ||||||||||||||||||| ||||
Sbjct: 97129 agcatcatgatttgggtgtttcaa 97106

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>gb|AC137673.2| Homo sapiens chromosome 3 clone CTD-2195M5, complete sequence
          Length = 139791

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ctgttcttttaggacttttg 214
             ||||||||||||||||||||
Sbjct: 89643 ctgttcttttaggacttttg 89662

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>ref|NM_212063.1| Eremothecium gossypii AGR335Cp (AGR335C), mRNA
          Length = 732

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 20  gaagaagggtaccagctggtgctc 43
           ||||||||||||||| ||||||||
Sbjct: 417 gaagaagggtaccaggtggtgctc 394

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>emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in linkage group 22,
             complete sequence
          Length = 189327

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   attacatcaagatggaaaaa 400
             ||||||||||||||||||||
Sbjct: 75476 attacatcaagatggaaaaa 75495

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>emb|AL929135.9| Zebrafish DNA sequence from clone CH211-125A22, complete sequence
          Length = 167531

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   attacatcaagatggaaaaa 400
             ||||||||||||||||||||
Sbjct: 72100 attacatcaagatggaaaaa 72081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,435,543
Number of Sequences: 3902068
Number of extensions: 5435543
Number of successful extensions: 101384
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101261
Number of HSP's gapped (non-prelim): 110
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result