Clone Information

BLAST Search Result

Clone Name	bags30e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC167439.2\| Mus musculus BAC clone RP23-461M17 from chromosom...	44	0.51
2	gb\|AC113283.13\| Mus musculus chromosome 3, clone RP23-397I12, co...	44	0.51
3	emb\|AL353674.17\| Human DNA sequence from clone RP11-162O6 on chr...	44	0.51
4	gb\|AC069353.9\| Homo sapiens chromosome 8, clone RP11-37B2, compl...	44	0.51
5	gb\|AC099816.2\| Homo sapiens, clone RP11-18K20, complete sequence	44	0.51
6	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.51
7	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.51
8	emb\|AL731890.2\|CNS08C8U Oryza sativa chromosome 12, . BAC OJ1563...	44	0.51
9	gb\|AC110376.4\| Mus musculus chromosome 12 clone RP23-441E7, comp...	42	2.0
10	gb\|AC140051.10\| Mus musculus chromosome 12, clone RP23-296J15, c...	42	2.0
11	gb\|AC073055.8\| Homo sapiens BAC clone RP11-111J8 from 7, complet...	42	2.0
12	emb\|AL356862.10\| Human DNA sequence from clone RP11-1M19 on chro...	42	2.0
13	ref\|XM_968587.1\| PREDICTED: Tribolium castaneum similar to CG941...	42	2.0
14	emb\|X68509.1\|ZYMVSR Zucchini Yellow Mosaic Virus-S RNA	42	2.0
15	emb\|CR925678.1\| Ehrlichia ruminantium str. Welgevonden, complete...	42	2.0
16	emb\|CR767821.1\| Ehrlichia ruminantium strain Welgevonden, comple...	42	2.0
17	gb\|AC093860.3\| Homo sapiens BAC clone RP11-538D9 from 4, complet...	42	2.0
18	gb\|U62158.2\|AMU62158 Alloplectus meridensis putative NADH dehydr...	42	2.0
19	gb\|AF014811.2\|AF014811 Zucchini yellow mosaic potyvirus polyprot...	42	2.0
20	gb\|AC079163.5\| Homo sapiens BAC clone RP11-707K3 from 2, complet...	42	2.0
21	gb\|AC136489.3\| Homo sapiens chromosome X clone RP13-749I18 map X...	42	2.0
22	gb\|AC136488.3\| Homo sapiens chromosome X clone RP13-886N14, comp...	42	2.0
23	gb\|AC132572.3\| Mus musculus BAC clone RP24-409B13 from chromosom...	42	2.0
24	gb\|AE017262.2\| Listeria monocytogenes str. 4b F2365, complete ge...	42	2.0
25	gb\|AE017334.2\| Bacillus anthracis str. 'Ames Ancestor', complete...	40	8.0
26	gb\|AE017225.1\| Bacillus anthracis str. Sterne, complete genome	40	8.0
27	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	8.0
28	gb\|DQ440283.1\| Aedes aegypti clone AET-3619 mitochondrial NADH:u...	40	8.0
29	gb\|AC125108.3\| Mus musculus BAC clone RP24-226A8 from chromosome...	40	8.0
30	gb\|AC112269.3\| Mus musculus BAC clone RP24-115O19 from 2, comple...	40	8.0
31	gb\|CP000001.1\| Bacillus cereus E33L, complete genome	40	8.0
32	gb\|AE014830.1\| Plasmodium falciparum 3D7 chromosome 10 section 2...	40	8.0
33	emb\|AL355674.10\| Human DNA sequence from clone RP11-171A24 on ch...	40	8.0
34	emb\|AL138816.12\| Human DNA sequence from clone RP11-235O20 on ch...	40	8.0
35	gb\|AC103018.7\| Rattus norvegicus 1 CH230-196F22 (Children's Hosp...	40	8.0
36	emb\|X76068.1\|PLMALBRR P.luminescens DNA for MalB regulatory region	40	8.0
37	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	40	8.0
38	emb\|CR626927.1\| Bacteroides fragilis NCTC 9343, complete genome	40	8.0
39	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	8.0
40	emb\|AL109957.2\|SPCC16A11 S.pombe chromosome III cosmid c16A11	40	8.0
41	emb\|BX571680.7\| Zebrafish DNA sequence from clone DKEY-30L20 in ...	40	8.0
42	emb\|AL590153.9\| Zebrafish DNA sequence from clone RP71-71M17 in ...	40	8.0
43	emb\|CR450753.6\| Zebrafish DNA sequence from clone DKEY-225F3 in ...	40	8.0
44	dbj\|AB232924.1\| Oryzias latipes hox gene cluster, complete cds, ...	40	8.0
45	gb\|AC097062.2\| Homo sapiens chromosome 1 clone RP11-428D12, comp...	40	8.0
46	emb\|BX511223.6\| Zebrafish DNA sequence from clone DKEYP-96B6 in ...	40	8.0
47	emb\|BX663499.5\| Zebrafish DNA sequence from clone CH211-160I2 in...	40	8.0
48	dbj\|AK078376.1\| Mus musculus 10 days neonate cerebellum cDNA, RI...	40	8.0
49	ref\|NM_001022994.1\| Schizosaccharomyces pombe 972h- hypothetical...	40	8.0
50	gb\|DQ159870.1\| Physcomitrella patens monodehydroascorbate reduct...	40	8.0
51	gb\|AC084508.1\|CBRG15E11 Caenorhabditis briggsae cosmid G15E11, c...	40	8.0
52	dbj\|AP006841.1\| Bacteroides fragilis YCH46 DNA, complete genome	40	8.0
53	gb\|AC150431.2\| Branchiostoma floridae clone CH302-9B19, complete...	40	8.0
54	dbj\|BS000060.1\| Pan troglodytes chromosome 22 clone:RP43-086L15,...	40	8.0
55	emb\|CR318601.8\| Zebrafish DNA sequence from clone CH211-274E20 i...	40	8.0
56	dbj\|AP001678.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.0
57	gb\|AE016879.1\| Bacillus anthracis str. Ames, complete genome	40	8.0
58	gb\|AE017194.1\| Bacillus cereus ATCC 10987, complete genome	40	8.0
59	dbj\|AP001166.4\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	8.0
60	emb\|AL928875.4\| Zebrafish DNA sequence from clone CH211-114C12, ...	40	8.0
61	emb\|AL845350.6\| Mouse DNA sequence from clone RP23-322M5 on chro...	40	8.0
62	emb\|AL592224.17\| Mouse DNA sequence from clone RP23-174G1 on chr...	40	8.0
63	emb\|AL732451.8\| Mouse DNA sequence from clone RP23-85G19 on chro...	40	8.0
64	dbj\|AP001254.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	8.0

>gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosome 3, complete sequence
          Length = 175414

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 384    cagagagattgagacctcatgc 405
              ||||||||||||||||||||||
Sbjct: 100887 cagagagattgagacctcatgc 100866

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>gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, complete sequence
          Length = 189865

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 384   cagagagattgagacctcatgc 405
             ||||||||||||||||||||||
Sbjct: 25746 cagagagattgagacctcatgc 25767

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>emb|AL353674.17| Human DNA sequence from clone RP11-162O6 on chromosome 6, complete
              sequence
          Length = 169897

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 84     catgacctgggactgaggaaactgaa 109
              |||||||||||||| |||||||||||
Sbjct: 139249 catgacctgggactcaggaaactgaa 139274

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>gb|AC069353.9| Homo sapiens chromosome 8, clone RP11-37B2, complete sequence
          Length = 170181

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 525    aaatatgttgaagaaaataagc 546
              ||||||||||||||||||||||
Sbjct: 115747 aaatatgttgaagaaaataagc 115726

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>gb|AC099816.2| Homo sapiens, clone RP11-18K20, complete sequence
          Length = 151460

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 525    aaatatgttgaagaaaataagc 546
              ||||||||||||||||||||||
Sbjct: 120255 aaatatgttgaagaaaataagc 120276

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 487      aaccaattaattgtccagaaaa 508
                ||||||||||||||||||||||
Sbjct: 11742476 aaccaattaattgtccagaaaa 11742497

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 487      aaccaattaattgtccagaaaa 508
                ||||||||||||||||||||||
Sbjct: 11742147 aaccaattaattgtccagaaaa 11742168

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>emb|AL731890.2|CNS08C8U Oryza sativa chromosome 12, . BAC OJ1563_B02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101314

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 487   aaccaattaattgtccagaaaa 508
             ||||||||||||||||||||||
Sbjct: 14190 aaccaattaattgtccagaaaa 14169

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>gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, complete sequence
          Length = 190516

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 245    tgattttatttgtacaaatat 265
              |||||||||||||||||||||
Sbjct: 179302 tgattttatttgtacaaatat 179322

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>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence
          Length = 205123

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 245   tgattttatttgtacaaatat 265
             |||||||||||||||||||||
Sbjct: 61722 tgattttatttgtacaaatat 61742

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>gb|AC073055.8| Homo sapiens BAC clone RP11-111J8 from 7, complete sequence
          Length = 87783

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    ataaactaatgagttcattat 70
             |||||||||||||||||||||
Sbjct: 60157 ataaactaatgagttcattat 60137

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>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3
             Contains part of the RALGPS1A gene for Ral guanine
             nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351)
             and the ANGPTL2 gene for angiopoietin-like 2
             (angiopoietin-related protein 2)(ARP2, HARP), complete
             sequence
          Length = 145481

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   attttatttgtacaaatatga 267
             |||||||||||||||||||||
Sbjct: 64016 attttatttgtacaaatatga 63996

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>ref|XM_968587.1| PREDICTED: Tribolium castaneum similar to CG9415-PA, isoform A
           (LOC662495), mRNA
          Length = 1015

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 cccgatggaagtgaagtgttg 158
           |||||||||||||||||||||
Sbjct: 791 cccgatggaagtgaagtgttg 811

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>emb|X68509.1|ZYMVSR Zucchini Yellow Mosaic Virus-S RNA
          Length = 3048

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  atgcttccttgtttaatttgc 138
            |||||||||||||||||||||
Sbjct: 1688 atgcttccttgtttaatttgc 1668

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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     aactaatgagttcattatgga 73
              |||||||||||||||||||||
Sbjct: 948275 aactaatgagttcattatgga 948295

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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     aactaatgagttcattatgga 73
              |||||||||||||||||||||
Sbjct: 968993 aactaatgagttcattatgga 969013

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>gb|AC093860.3| Homo sapiens BAC clone RP11-538D9 from 4, complete sequence
          Length = 191446

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    ctgaggaaactgaaaattaga 116
             |||||||||||||||||||||
Sbjct: 96036 ctgaggaaactgaaaattaga 96056

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>gb|U62158.2|AMU62158 Alloplectus meridensis putative NADH dehydrogenase (ndhF) gene,
           chloroplast gene encoding chloroplast protein, partial
           sequence
          Length = 2088

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 313 tttattcgaaatattcaacga 333
           |||||||||||||||||||||
Sbjct: 598 tttattcgaaatattcaacga 618

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>gb|AF014811.2|AF014811 Zucchini yellow mosaic potyvirus polyprotein gene, complete cds
          Length = 9606

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  atgcttccttgtttaatttgc 138
            |||||||||||||||||||||
Sbjct: 7209 atgcttccttgtttaatttgc 7189

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>gb|AC079163.5| Homo sapiens BAC clone RP11-707K3 from 2, complete sequence
          Length = 169771

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    atatgcttccttgtttaattt 136
              |||||||||||||||||||||
Sbjct: 137524 atatgcttccttgtttaattt 137504

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>gb|AC136489.3| Homo sapiens chromosome X clone RP13-749I18 map Xp11.3 complete
             sequence
          Length = 164468

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 523   tgaaatatgttgaagaaaata 543
             |||||||||||||||||||||
Sbjct: 16694 tgaaatatgttgaagaaaata 16714

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>gb|AC136488.3| Homo sapiens chromosome X clone RP13-886N14, complete sequence
          Length = 163835

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 523    tgaaatatgttgaagaaaata 543
              |||||||||||||||||||||
Sbjct: 115282 tgaaatatgttgaagaaaata 115302

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>gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosome 12, complete sequence
          Length = 131385

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    tgattttatttgtacaaatat 265
              |||||||||||||||||||||
Sbjct: 109382 tgattttatttgtacaaatat 109362

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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 550    gaagcttcaattgattgatgc 570
              |||||||||||||||||||||
Sbjct: 376639 gaagcttcaattgattgatgc 376659

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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 548     ttgaagcttcaattgattga 567
               ||||||||||||||||||||
Sbjct: 3908501 ttgaagcttcaattgattga 3908520

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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 548     ttgaagcttcaattgattga 567
               ||||||||||||||||||||
Sbjct: 3908873 ttgaagcttcaattgattga 3908892

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 563    attgatgccctgcttggact 582
              ||||||||||||||||||||
Sbjct: 351742 attgatgccctgcttggact 351761

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>gb|DQ440283.1| Aedes aegypti clone AET-3619 mitochondrial NADH:ubiquinone
           oxidoreductase NDUFV1/51 kDa subunit mRNA, complete cds;
           nuclear gene for mitochondrial product
          Length = 1461

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 cttcaatcaacttgtgtgga 310
           ||||||||||||||||||||
Sbjct: 496 cttcaatcaacttgtgtgga 477

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>gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome 10, complete sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   gaaatatgttgaagaaaata 543
             ||||||||||||||||||||
Sbjct: 11415 gaaatatgttgaagaaaata 11434

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>gb|AC112269.3| Mus musculus BAC clone RP24-115O19 from 2, complete sequence
          Length = 172714

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aaaattagatatgcttcctt 127
             ||||||||||||||||||||
Sbjct: 76267 aaaattagatatgcttcctt 76286

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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 548     ttgaagcttcaattgattga 567
               ||||||||||||||||||||
Sbjct: 3944882 ttgaagcttcaattgattga 3944901

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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 492    attaattgtccagaaaaaattgcg 515
              ||||||||| ||||||||||||||
Sbjct: 183685 attaattgtacagaaaaaattgcg 183662

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>emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on chromosome 9 Contains the
             5' end of the RORB gene for RAR-related orphan receptor B
             protein (RZRB, ROR-BETA), two novel genes and two CpG
             islands, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    tgaggaaactgaaaattaga 116
             ||||||||||||||||||||
Sbjct: 34742 tgaggaaactgaaaattaga 34761

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>emb|AL138816.12| Human DNA sequence from clone RP11-235O20 on chromosome 13 Contains the
             3' end of the gene for a novel protein similar to heparan
             sulfate 6-sulfotransferase, complete sequence
          Length = 142420

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   gaaaataagctttgaagctt 556
             ||||||||||||||||||||
Sbjct: 19547 gaaaataagctttgaagctt 19528

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>gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 212568

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 466    ggcagaaacctaataaagtgcaaccaat 493
              ||||||||||||||||||| || |||||
Sbjct: 177540 ggcagaaacctaataaagtccatccaat 177567

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>emb|X76068.1|PLMALBRR P.luminescens DNA for MalB regulatory region
          Length = 688

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 aaaaatgataagccagagtg 187
           ||||||||||||||||||||
Sbjct: 561 aaaaatgataagccagagtg 542

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    gaaatatgttgaagaaaata 543
              ||||||||||||||||||||
Sbjct: 206265 gaaatatgttgaagaaaata 206246

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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      tgcaagttaggataaactaa 58
               ||||||||||||||||||||
Sbjct: 3634622 tgcaagttaggataaactaa 3634641

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 563    attgatgccctgcttggact 582
              ||||||||||||||||||||
Sbjct: 126714 attgatgccctgcttggact 126733

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>emb|AL109957.2|SPCC16A11 S.pombe chromosome III cosmid c16A11
          Length = 34567

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   gcttctgatgaattattgca 208
             ||||||||||||||||||||
Sbjct: 31335 gcttctgatgaattattgca 31316

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>emb|BX571680.7| Zebrafish DNA sequence from clone DKEY-30L20 in linkage group 7,
             complete sequence
          Length = 145338

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   cctaataaagtgcaaccaat 493
             ||||||||||||||||||||
Sbjct: 19699 cctaataaagtgcaaccaat 19680

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>emb|AL590153.9| Zebrafish DNA sequence from clone RP71-71M17 in linkage group 8
             Contains a novel gene and part of a novel gene for a
             protein similar to mouse silencing mediator of retinoic
             acid and thyroid hormone receptor (SMRT), complete
             sequence
          Length = 133947

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   aataaagtgcaaccaattaa 496
             ||||||||||||||||||||
Sbjct: 23773 aataaagtgcaaccaattaa 23754

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>emb|CR450753.6| Zebrafish DNA sequence from clone DKEY-225F3 in linkage group 22,
             complete sequence
          Length = 160631

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tagtagtatatttcttggat 240
             ||||||||||||||||||||
Sbjct: 42694 tagtagtatatttcttggat 42675

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>dbj|AB232924.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDb
          Length = 220448

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   ttctgattaaaaatgataagccag 183
             ||||||||||||||| ||||||||
Sbjct: 27593 ttctgattaaaaatgttaagccag 27616

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>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence
          Length = 185700

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 109   aaattagatatgcttccttgtttaattt 136
             |||||| |||||||||||| ||||||||
Sbjct: 75604 aaattacatatgcttccttatttaattt 75631

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>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14,
             complete sequence
          Length = 190254

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   tgttgaagaaaataagcttt 549
             ||||||||||||||||||||
Sbjct: 94911 tgttgaagaaaataagcttt 94930

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>emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in linkage group 2,
              complete sequence
          Length = 195369

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 487    aaccaattaattgtccagaaaaaa 510
              ||||||| ||||||||||||||||
Sbjct: 104954 aaccaataaattgtccagaaaaaa 104977

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>dbj|AK078376.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:6530426K03 product:similar to
            NEPRILYSIN-LIKE PEPTIDASE GAMMA [Mus musculus], full
            insert sequence
          Length = 3535

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  aaaattagatatgcttcctt 127
            ||||||||||||||||||||
Sbjct: 2793 aaaattagatatgcttcctt 2812

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>ref|NM_001022994.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPCC16A11.16c), partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 gcttctgatgaattattgca 208
           ||||||||||||||||||||
Sbjct: 151 gcttctgatgaattattgca 170

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>gb|DQ159870.1| Physcomitrella patens monodehydroascorbate reductase II (Mdhar2)
            gene, promoter region and complete cds
          Length = 6318

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  ctgaaaattagatatgcttc 124
            ||||||||||||||||||||
Sbjct: 2067 ctgaaaattagatatgcttc 2086

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>gb|AC084508.1|CBRG15E11 Caenorhabditis briggsae cosmid G15E11, complete sequence
          Length = 43372

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   ttcgaaatattcaacgatga 336
             ||||||||||||||||||||
Sbjct: 40027 ttcgaaatattcaacgatga 40008

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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      tgcaagttaggataaactaa 58
               ||||||||||||||||||||
Sbjct: 3726960 tgcaagttaggataaactaa 3726979

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>gb|AC150431.2| Branchiostoma floridae clone CH302-9B19, complete sequence
          Length = 172975

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ctcttcaatcaacttgtgtg 308
             ||||||||||||||||||||
Sbjct: 50006 ctcttcaatcaacttgtgtg 49987

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>dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15, map 22, complete
             sequences
          Length = 159919

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    actgaggaaactgaaaatta 114
             ||||||||||||||||||||
Sbjct: 90754 actgaggaaactgaaaatta 90735

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>emb|CR318601.8| Zebrafish DNA sequence from clone CH211-274E20 in linkage group 7,
             complete sequence
          Length = 165501

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   cctaataaagtgcaaccaat 493
             ||||||||||||||||||||
Sbjct: 96180 cctaataaagtgcaaccaat 96161

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>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     actgaggaaactgaaaatta 114
              ||||||||||||||||||||
Sbjct: 212150 actgaggaaactgaaaatta 212131

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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 548     ttgaagcttcaattgattga 567
               ||||||||||||||||||||
Sbjct: 3908374 ttgaagcttcaattgattga 3908393

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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 548     ttgaagcttcaattgattga 567
               ||||||||||||||||||||
Sbjct: 3852275 ttgaagcttcaattgattga 3852294

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>dbj|AP001166.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-865B13, complete
             sequence
          Length = 104600

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   atgactaggtgagctgaaca 352
             ||||||||||||||||||||
Sbjct: 98672 atgactaggtgagctgaaca 98653

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>emb|AL928875.4| Zebrafish DNA sequence from clone CH211-114C12, complete sequence
          Length = 158038

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   attcagtgattttatttgta 258
             ||||||||||||||||||||
Sbjct: 20686 attcagtgattttatttgta 20667

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>emb|AL845350.6| Mouse DNA sequence from clone RP23-322M5 on chromosome 2, complete
             sequence
          Length = 90631

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaaattagatatgcttcctt 127
             ||||||||||||||||||||
Sbjct: 77773 aaaattagatatgcttcctt 77754

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>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
             sequence
          Length = 217775

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   attttatttgtacaaatatg 266
             ||||||||||||||||||||
Sbjct: 57097 attttatttgtacaaatatg 57116

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>emb|AL732451.8| Mouse DNA sequence from clone RP23-85G19 on chromosome X, complete
             sequence
          Length = 213822

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   aagaaaataagctttgaagc 554
             ||||||||||||||||||||
Sbjct: 26873 aagaaaataagctttgaagc 26854

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>dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B66B12,
             LL56-APP region, complete sequence
          Length = 173915

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    actgaggaaactgaaaatta 114
             ||||||||||||||||||||
Sbjct: 34743 actgaggaaactgaaaatta 34724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,390,689
Number of Sequences: 3902068
Number of extensions: 6390689
Number of successful extensions: 141733
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141085
Number of HSP's gapped (non-prelim): 648
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result