ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30e01 |
|---|---|
| Clone Library Name | barley_pub |
>YO77_SCHPO (Q9USW9) Hypothetical protein C1921.07c in chromosome II| Length = 244 Score = 46.6 bits (109), Expect = 3e-05 Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Frame = +3 Query: 90 DEKDEWFVVKVIHFDKE--TKEFEVLDEEPGDDEESAQKFERKYKLPMSYIIPFPKKGDP 263 +E +W +I E + FEV D EP DD + Q YK +++I P KG P Sbjct: 129 NEGGDWIQCIIIKVTGEGAKQRFEVQDPEPDDDGNAGQI----YKTTANHLIQIPAKGTP 184 Query: 264 SSAQDFGQGRQVLAVYPGTTALYRATVASHRKRKSDDYNLLFDDDEEDG 410 VLA YP TT YRA V R L F+ +EE G Sbjct: 185 --LPPISPKTNVLARYPETTTFYRAEVI--RTLPDGSCKLRFEGEEEVG 229
>SGF29_YEAST (P25554) SAGA-associated factor 29 (29 kDa SAGA-associated factor)| (SAGA histone acetyltransferase complex 29 kDa subunit) Length = 259 Score = 44.7 bits (104), Expect = 1e-04 Identities = 35/118 (29%), Positives = 50/118 (42%) Frame = +3 Query: 51 LKGEQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYKLPMS 230 L G +VA + + EW +V+ + FEV D EP + S + ++ K + Sbjct: 126 LVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLL 185 Query: 231 YIIPFPKKGDPSSAQDFGQGRQVLAVYPGTTALYRATVASHRKRKSDDYNLLFDDDEE 404 FP K P G +VLA YP TT Y A V ++ L FD +EE Sbjct: 186 IPPGFPTKNYP-------PGTKVLARYPETTTFYPAIVIG--TKRDGTCRLRFDGEEE 234
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 34.3 bits (77), Expect = 0.15 Identities = 27/108 (25%), Positives = 44/108 (40%) Frame = +3 Query: 84 SDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYKLPMSYIIPFPKKGDP 263 SD+E ++ +K K+ + EE DDE+ +++ + K P P KK + Sbjct: 95 SDEEAEDQKPIKNKPVAKKAVAKKEESEEDDDDEDESEEEKAVAKKPTPAKKPAGKKQES 154 Query: 264 SSAQDFGQGRQVLAVYPGTTALYRATVASHRKRKSDDYNLLFDDDEED 407 D + + V P A A + DD + DDDEE+ Sbjct: 155 EEEDDEESEDEPMEVAPALKGKKTAQAAEEDDEEEDDDDEEDDDDEEE 202 Score = 31.6 bits (70), Expect = 0.95 Identities = 22/82 (26%), Positives = 35/82 (42%) Frame = +3 Query: 33 LDXAANLKGEQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERK 212 ++ A LKG++ A + DDE+++ D+E DD+E Q+ K Sbjct: 167 MEVAPALKGKKTAQAAEEDDEEEDD------------------DDEEDDDDEEEQQGSAK 208 Query: 213 YKLPMSYIIPFPKKGDPSSAQD 278 K M IP KK +A + Sbjct: 209 RKKEMPKTIPEAKKTKTDTASE 230
>SUCD2_ARCFU (O28098) Succinyl-CoA synthetase alpha chain 2 (EC 6.2.1.5)| (SCS-alpha 2) Length = 287 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 111 VVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYKLPM 227 V+++ DKETK ++ E G DEE A +F R+ P+ Sbjct: 191 VLRLFEDDKETKAVVLVGEIGGRDEEVAAEFIREMSKPV 229
>CRTC_RABIT (P15253) Calreticulin precursor (CRP55) (Calregulin) (HACBP)| (ERp60) Length = 418 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +3 Query: 21 MRSQLDXAANLKGEQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEE 188 M+ + D LK E+ + K ++E +E DK+ KE E DEE D+EE Sbjct: 357 MKDKQDEEQRLKEEEEEKKRKEEEEAEE------DEEDKDDKEDEDEDEEDKDEEE 406
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +3 Query: 9 SSASMRSQLDXAANLKGEQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEE 188 S+A + D A QV SDDE DE+ D++ E E + + DD E Sbjct: 157 SNAKTWANNDAGAVANEPQVIQSTASDDEYDEFTGKGDDEIDEDEDEEEESENKKDDDNE 216 Query: 189 SAQKFE 206 A++ E Sbjct: 217 EAEEDE 222
>BFR2_EMENI (Q5AW04) Protein bfr2| Length = 576 Score = 28.9 bits (63), Expect = 6.2 Identities = 27/100 (27%), Positives = 45/100 (45%) Frame = +3 Query: 60 EQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYKLPMSYII 239 E ++ S+D++D K ++E +E E D+E D+EE K +R+ + Sbjct: 168 EDISGEDDSEDDED----AKEEEEEEEEEEEEEEDDESEDEEEKTAKPKRR--------V 215 Query: 240 PFPKKGDPSSAQDFGQGRQVLAVYPGTTALYRATVASHRK 359 F ++ D Q RQ+LA T A AT++ K Sbjct: 216 QFANAKVADTSDDRAQLRQLLATDQKTIA---ATISQAAK 252
>CDC13_YEAST (P32797) Cell division control protein 13| Length = 924 Score = 28.9 bits (63), Expect = 6.2 Identities = 18/62 (29%), Positives = 34/62 (54%) Frame = +3 Query: 90 DEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYKLPMSYIIPFPKKGDPSS 269 DEK+ + VK+IH+D E K+F V D++ ++S + +P IP+ + + + Sbjct: 196 DEKNRFKFVKLIHYDIELKKF-VQDQQKVLSQKSKAAAINPFFVPNRLGIPYIESQNEFN 254 Query: 270 AQ 275 +Q Sbjct: 255 SQ 256
>PLCB1_RAT (P10687) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 28.5 bits (62), Expect = 8.1 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Frame = +3 Query: 60 EQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYK-LPMSYI 236 ++V +K +E K++ KE ++ ++LDE+P E Q+++ K+K LP+ + Sbjct: 1104 QEVVQYIKRLEEAQSKRQEKLVEKHKEIRQ-QILDEKPKLQMELEQEYQDKFKRLPLEIL 1162 Query: 237 --IPFPKKGDPSSAQDFGQGRQVLAVYPGTTAL 329 + KG S + G LA P L Sbjct: 1163 EFVQEAMKGKVSEDSNHGSAPPSLASDPAKVNL 1195
>PLCB1_HUMAN (Q9NQ66) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 28.5 bits (62), Expect = 8.1 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Frame = +3 Query: 60 EQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERKYK-LPMSYI 236 ++V +K +E K++ KE ++ ++LDE+P E Q+++ K+K LP+ + Sbjct: 1104 QEVVQYIKRLEEAQSKRQEKLVEKHKEIRQ-QILDEKPKLQVELEQEYQDKFKRLPLEIL 1162 Query: 237 --IPFPKKGDPSSAQDFGQGRQVLAVYPG 317 + KG S + G L+ PG Sbjct: 1163 EFVQEAMKGKISEDSNHGSAPLSLSSDPG 1191
>GCSP_AGRT5 (Q8UFD6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 954 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +1 Query: 187 RAPKSLRGSTSYLCHILFHFQRKE---IRLVLRILDR 288 R PK L ++ Y+ H +FH R E R + R+ DR Sbjct: 458 RLPKDLLRTSQYMTHPIFHMNRAESEMTRYIRRLSDR 494
>YWTF_BACSU (Q7WY78) Hypothetical transcriptional regulator ywtF| Length = 322 Score = 28.5 bits (62), Expect = 8.1 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = +3 Query: 3 RFSSASMRSQLDXAANLKGEQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDD 182 + ++AS + + A +GEQ R+K D + F V ++ D K E +D + D Sbjct: 42 KLNNASKEAHVSLA---RGEQSVKRIKEFDPGKDSFSVLLLGIDAREKNGETVD-QARSD 97 Query: 183 EESAQKFERKYKLPMSYIIP 242 F RK K IP Sbjct: 98 ANVLVTFNRKEKTAKMLSIP 117
>HAS1_ASPOR (Q2UUN6) ATP-dependent RNA helicase has1 (EC 3.6.1.-)| Length = 596 Score = 28.5 bits (62), Expect = 8.1 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Frame = +3 Query: 54 KGEQVAARVKSDDEKDEWFVVKVIHFDKETKEFEVLDEEPGDDEESAQKFERK-----YK 218 K E + K+ EK + V+ + D+E K E ++E D+EE E Sbjct: 43 KEEVTVEKKKAKKEKSKKQKVEHMSSDEEQKNTEESEQEASDNEEEKSDAEETPAANGED 102 Query: 219 LPMSYIIPFPKK-GDPSSAQDFGQGRQVL 302 LP + I P++ GDP + G + + Sbjct: 103 LPSADTIRLPQQDGDPVKFTELGLSEKTM 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,928,482 Number of Sequences: 219361 Number of extensions: 1247320 Number of successful extensions: 4279 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4241 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
