| Clone Name | bags30e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063H10, full insert sequence Length = 1236 Score = 402 bits (203), Expect = e-109 Identities = 378/438 (86%), Gaps = 9/438 (2%) Strand = Plus / Plus Query: 12 tctgcatctatgaggagccaacttgaccnagctgcaaaccttaaaggagagcaggttgca 71 |||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| Sbjct: 558 tctgcatctatgaggagccaacttgaccaagctacaaacctgaaaggagaacaggttgca 617 Query: 72 gcgagggtaaagtcggatgatgaaaaagacgagtggtttgtggtgaaggtcatacatttc 131 || | ||| || || || || |||||||| || ||||||||||||||||| ||||||||| Sbjct: 618 gctaaggtcaaatcagacgaagaaaaagatgaatggtttgtggtgaaggtgatacatttc 677 Query: 132 gataaggaaacaaaagaatttgaagtactggatgaggagcctggtgatgatgaagagagc 191 ||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||||||||| Sbjct: 678 gataaggaaacaaaagaatatgaggtacttgatgaggagccaggtgacgatgaagagagt 737 Query: 192 gcccaaaagtttgagaggaagtacaagttacctatgtcatatattattccatttccaaag 251 ||||||||| ||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 738 gcccaaaag---------aagtacaagttgcctatgtcagatattattccatttccaaag 788 Query: 252 aaaggagatccgtctagtgctcaggattttggacagggtcggcaagtcttagctgtttat 311 | ||| ||||| || ||||| | |||||||| |||||||| |||||||||||||||||| Sbjct: 789 agaggggatccttccagtgccccagattttgggcagggtcgacaagtcttagctgtttat 848 Query: 312 cctggcacaacagcactatatagggccaccgtagcctctcatcgtaagaggaaatctgat 371 ||| ||||||||||||||||||| || || || |||||| ||||||||||||||||||| Sbjct: 849 cctagcacaacagcactatatagagctactgttgcctctaatcgtaagaggaaatctgac 908 Query: 372 gattacaatctcttatttgatgatgacgaagaggatgggaatctaccagagagagctgtt 431 ||||| ||||| |||||||||||||| |||||||| ||||||||| | |||||||| Sbjct: 909 gattatctactcttgtttgatgatgacgaggaggatggaaatctaccacaaagagctgtg 968 Query: 432 ccattttacagagtggtt 449 || || || ||||||||| Sbjct: 969 ccgttctatagagtggtt 986
>gb|BT018456.1| Zea mays clone EL01N0409A08.d mRNA sequence Length = 1170 Score = 321 bits (162), Expect = 1e-84 Identities = 319/373 (85%), Gaps = 9/373 (2%) Strand = Plus / Plus Query: 4 gattttcttctgcatctatgaggagccaacttgaccnagctgcaaaccttaaaggagagc 63 |||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| Sbjct: 453 gattttctgctgcatctatgaggaatcaacttgaccaagctgcaagccttaaaggagagc 512 Query: 64 aggttgcagcgagggtaaagtcggatgatgaaaaagacgagtggtttgtggtgaaggtca 123 ||||||| || |||||||| || ||||| |||||||||||||||||||| ||||||||| Sbjct: 513 aggttgctgctagggtaaaatcagatgacgaaaaagacgagtggtttgtcgtgaaggtcc 572 Query: 124 tacatttcgataaggaaacaaaagaatttgaagtactggatgaggagcctggtgatgatg 183 | ||||||||||||| |||||||| | ||||||||| || || || || |||||||| | Sbjct: 573 tttatttcgataaggagacaaaagagtatgaagtacttgacgaagaaccaggtgatgacg 632 Query: 184 aagagagcgcccaaaagtttgagaggaagtacaagttacctatgtcatatattattccat 243 |||||||| | ||||| |||||||||||| |||||||| || |||||||||| Sbjct: 633 aagagagcactcaaaa---------gaagtacaagttgcctatgtcttacattattccat 683 Query: 244 ttccaaagaaaggagatccgtctagtgctcaggattttggacagggtcggcaagtcttag 303 |||| |||||||| ||||| || ||||| | |||||||| |||||||| ||||| |||| Sbjct: 684 ttccgaagaaaggggatccttcgagtgccccagattttgggcagggtcgacaagttttag 743 Query: 304 ctgtttatcctggcacaacagcactatatagggccaccgtagcctctcatcgtaagagga 363 ||||||||||||||||||||||| |||| || || ||||||| |||||||||||||||| Sbjct: 744 ctgtttatcctggcacaacagcattatacagagctcccgtagcttctcatcgtaagagga 803 Query: 364 aatctgatgatta 376 | ||||||||||| Sbjct: 804 agtctgatgatta 816
>gb|AY106324.1| Zea mays PCO133117 mRNA sequence Length = 711 Score = 228 bits (115), Expect = 1e-56 Identities = 225/263 (85%), Gaps = 9/263 (3%) Strand = Plus / Plus Query: 114 gtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggatgaggagcct 173 |||||||||||||||||||||||||| |||||||| | ||||||||| || || || || Sbjct: 21 gtgaaggtcatacatttcgataaggagacaaaagagtatgaagtacttgacgaagaacca 80 Query: 174 ggtgatgatgaagagagcgcccaaaagtttgagaggaagtacaagttacctatgtcatat 233 |||||||| ||||||||| | |||||| ||||||||||| |||||||| || Sbjct: 81 ggtgatgacgaagagagcactcaaaag---------aagtacaagttgcctatgtcttac 131 Query: 234 attattccatttccaaagaaaggagatccgtctagtgctcaggattttggacagggtcgg 293 |||||||||||||| |||||||| ||||| || ||||| | ||||||||| |||||||| Sbjct: 132 attattccatttccgaagaaaggggatccttcgagtgccccggattttgggcagggtcga 191 Query: 294 caagtcttagctgtttatcctggcacaacagcactatatagggccaccgtagcctctcat 353 ||||| ||||||||||||||||||||||||||| |||| || || |||||||| |||||| Sbjct: 192 caagttttagctgtttatcctggcacaacagcattatacagagctaccgtagcttctcat 251 Query: 354 cgtaagaggaaatctgatgatta 376 ||||||||||| ||||||||||| Sbjct: 252 cgtaagaggaagtctgatgatta 274
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 207 aggaagtacaagttacctatgtcatatattattccatttccaaagaaaggagatccgtct 266 |||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| || Sbjct: 11221580 aggaagtacaagttgcctatgtcagatattattccatttccaaagagaggggatccttcc 11221521 Query: 267 agtgctcaggattttggacagggtcggcaagtcttagctgtttatcctggcacaacagca 326 ||||| | |||||||| |||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 11221520 agtgccccagattttgggcagggtcgacaagtcttagctgtttatcctagcacaacagca 11221461 Query: 327 ctatatagggccaccgtagcctctcatcgtaag 359 |||||||| || || || |||||| |||||||| Sbjct: 11221460 ctatatagagctactgttgcctctaatcgtaag 11221428 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 63 caggttgcagcgagggtaaagtcggatgatgaaaaagacgagtggtttgtggtgaaggtc 122 ||||||||||| | ||| || || || || |||||||| || ||||||||||||||||| Sbjct: 11224828 caggttgcagctaaggtcaaatcagacgaagaaaaagatgaatggtttgtggtgaaggtg 11224769 Query: 123 atacatttcgataaggaaacaaaaga 148 |||||||||||||||||||||||||| Sbjct: 11224768 atacatttcgataaggaaacaaaaga 11224743 Score = 83.8 bits (42), Expect = 5e-13 Identities = 53/57 (92%) Strand = Plus / Minus Query: 12 tctgcatctatgaggagccaacttgaccnagctgcaaaccttaaaggagagcaggtt 68 |||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||| Sbjct: 11226114 tctgcatctatgaggagccaacttgaccaagctacaaacctgaaaggagaacaggtt 11226058 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 381 ctcttatttgatgatgacgaagaggatgggaatctaccagagagagctgttccattttac 440 ||||| |||||||||||||| |||||||| ||||||||| | |||||||| || || || Sbjct: 11218124 ctcttgtttgatgatgacgaggaggatggaaatctaccacaaagagctgtgccgttctat 11218065 Query: 441 agagtggtt 449 ||||||||| Sbjct: 11218064 agagtggtt 11218056 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 156 gtactggatgaggagcctggtgatgatgaagagagcgcccaaaagtttgaga 207 ||||| ||||||||||| ||||| ||||||||||| |||||||||| ||||| Sbjct: 11223710 gtacttgatgaggagccaggtgacgatgaagagagtgcccaaaagtatgaga 11223659
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Minus Query: 207 aggaagtacaagttacctatgtcatatattattccatttccaaagaaaggagatccgtct 266 |||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| || Sbjct: 11221251 aggaagtacaagttgcctatgtcagatattattccatttccaaagagaggggatccttcc 11221192 Query: 267 agtgctcaggattttggacagggtcggcaagtcttagctgtttatcctggcacaacagca 326 ||||| | |||||||| |||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 11221191 agtgccccagattttgggcagggtcgacaagtcttagctgtttatcctagcacaacagca 11221132 Query: 327 ctatatagggccaccgtagcctctcatcgtaag 359 |||||||| || || || |||||| |||||||| Sbjct: 11221131 ctatatagagctactgttgcctctaatcgtaag 11221099 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 63 caggttgcagcgagggtaaagtcggatgatgaaaaagacgagtggtttgtggtgaaggtc 122 ||||||||||| | ||| || || || || |||||||| || ||||||||||||||||| Sbjct: 11224499 caggttgcagctaaggtcaaatcagacgaagaaaaagatgaatggtttgtggtgaaggtg 11224440 Query: 123 atacatttcgataaggaaacaaaaga 148 |||||||||||||||||||||||||| Sbjct: 11224439 atacatttcgataaggaaacaaaaga 11224414 Score = 83.8 bits (42), Expect = 5e-13 Identities = 53/57 (92%) Strand = Plus / Minus Query: 12 tctgcatctatgaggagccaacttgaccnagctgcaaaccttaaaggagagcaggtt 68 |||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||| Sbjct: 11225785 tctgcatctatgaggagccaacttgaccaagctacaaacctgaaaggagaacaggtt 11225729 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 381 ctcttatttgatgatgacgaagaggatgggaatctaccagagagagctgttccattttac 440 ||||| |||||||||||||| |||||||| ||||||||| | |||||||| || || || Sbjct: 11217795 ctcttgtttgatgatgacgaggaggatggaaatctaccacaaagagctgtgccgttctat 11217736 Query: 441 agagtggtt 449 ||||||||| Sbjct: 11217735 agagtggtt 11217727 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 156 gtactggatgaggagcctggtgatgatgaagagagcgcccaaaagtttgaga 207 ||||| ||||||||||| ||||| ||||||||||| |||||||||| ||||| Sbjct: 11223381 gtacttgatgaggagccaggtgacgatgaagagagtgcccaaaagtatgaga 11223330
>emb|AL731875.2|CNS08C8F Oryza sativa chromosome 12, . BAC OJ1060_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108805 Score = 168 bits (85), Expect = 1e-38 Identities = 136/153 (88%) Strand = Plus / Plus Query: 207 aggaagtacaagttacctatgtcatatattattccatttccaaagaaaggagatccgtct 266 |||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| || Sbjct: 35078 aggaagtacaagttgcctatgtcagatattattccatttccaaagagaggggatccttcc 35137 Query: 267 agtgctcaggattttggacagggtcggcaagtcttagctgtttatcctggcacaacagca 326 ||||| | |||||||| |||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 35138 agtgccccagattttgggcagggtcgacaagtcttagctgtttatcctagcacaacagca 35197 Query: 327 ctatatagggccaccgtagcctctcatcgtaag 359 |||||||| || || || |||||| |||||||| Sbjct: 35198 ctatatagagctactgttgcctctaatcgtaag 35230 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 63 caggttgcagcgagggtaaagtcggatgatgaaaaagacgagtggtttgtggtgaaggtc 122 ||||||||||| | ||| || || || || |||||||| || ||||||||||||||||| Sbjct: 31830 caggttgcagctaaggtcaaatcagacgaagaaaaagatgaatggtttgtggtgaaggtg 31889 Query: 123 atacatttcgataaggaaacaaaaga 148 |||||||||||||||||||||||||| Sbjct: 31890 atacatttcgataaggaaacaaaaga 31915 Score = 83.8 bits (42), Expect = 5e-13 Identities = 53/57 (92%) Strand = Plus / Plus Query: 12 tctgcatctatgaggagccaacttgaccnagctgcaaaccttaaaggagagcaggtt 68 |||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||| Sbjct: 30544 tctgcatctatgaggagccaacttgaccaagctacaaacctgaaaggagaacaggtt 30600 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 381 ctcttatttgatgatgacgaagaggatgggaatctaccagagagagctgttccattttac 440 ||||| |||||||||||||| |||||||| ||||||||| | |||||||| || || || Sbjct: 38534 ctcttgtttgatgatgacgaggaggatggaaatctaccacaaagagctgtgccgttctat 38593 Query: 441 agagtggtt 449 ||||||||| Sbjct: 38594 agagtggtt 38602 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 156 gtactggatgaggagcctggtgatgatgaagagagcgcccaaaagtttgaga 207 ||||| ||||||||||| ||||| ||||||||||| |||||||||| ||||| Sbjct: 32948 gtacttgatgaggagccaggtgacgatgaagagagtgcccaaaagtatgaga 32999
>dbj|AP004466.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09C23, TM0001, complete sequence Length = 103397 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 149 atttgaagtactggatgaggagcctggtgatgatgaagagagc 191 |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 24549 atttgaagtactagatgaggagcctggtgatgatgaagagagc 24591
>ref|NM_113661.3| Arabidopsis thaliana unknown protein AT3G27460 mRNA, complete cds Length = 1322 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 105 tggtttgtggtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggat 164 |||||||||||||| || || || ||||| | |||||||||||| |||||||||| ||| Sbjct: 710 tggtttgtggtgaaagttattcacttcgacagagaaacaaaagaagttgaagtacttgat 769 Query: 165 gaggagcctggtgatgatgaaga 187 || || || || ||||||||||| Sbjct: 770 gaagaaccaggagatgatgaaga 792
>ref|NM_123419.2| Arabidopsis thaliana unknown protein AT5G40550 mRNA, complete cds Length = 1283 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 105 tggtttgtggtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggat 164 ||||||||||| || || || || ||||||| |||||||||||| |||||||||| ||| Sbjct: 634 tggtttgtggttaaagttattcacttcgatagagaaacaaaagaagttgaagtacttgat 693 Query: 165 gaggagcctggtgatgatgaaga 187 || || || || ||||||||||| Sbjct: 694 gaagaaccaggagatgatgaaga 716 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 297 gtcttagctgtttatcctggcacaacagcact 328 ||||||||||| ||||| || ||||||||||| Sbjct: 820 gtcttagctgtatatcccgggacaacagcact 851
>gb|AY122985.1| Arabidopsis thaliana unknown protein (At3g27460) mRNA, complete cds Length = 844 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 105 tggtttgtggtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggat 164 |||||||||||||| || || || ||||| | |||||||||||| |||||||||| ||| Sbjct: 445 tggtttgtggtgaaagttattcacttcgacagagaaacaaaagaagttgaagtacttgat 504 Query: 165 gaggagcctggtgatgatgaaga 187 || || || || ||||||||||| Sbjct: 505 gaagaaccaggagatgatgaaga 527
>gb|AY080609.1| Arabidopsis thaliana unknown protein (At3g27460) mRNA, complete cds Length = 1355 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 105 tggtttgtggtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggat 164 |||||||||||||| || || || ||||| | |||||||||||| |||||||||| ||| Sbjct: 715 tggtttgtggtgaaagttattcacttcgacagagaaacaaaagaagttgaagtacttgat 774 Query: 165 gaggagcctggtgatgatgaaga 187 || || || || ||||||||||| Sbjct: 775 gaagaaccaggagatgatgaaga 797
>gb|BT024494.1| Arabidopsis thaliana At5g40550 mRNA, complete cds Length = 822 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 105 tggtttgtggtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggat 164 ||||||||||| || || || || ||||||| |||||||||||| |||||||||| ||| Sbjct: 454 tggtttgtggttaaagttattcacttcgatagagaaacaaaagaagttgaagtacttgat 513 Query: 165 gaggagcctggtgatgatgaaga 187 || || || || ||||||||||| Sbjct: 514 gaagaaccaggagatgatgaaga 536 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 297 gtcttagctgtttatcctggcacaacagcact 328 ||||||||||| ||||| || ||||||||||| Sbjct: 640 gtcttagctgtatatcccgggacaacagcact 671
>gb|BT022070.1| Arabidopsis thaliana unknown protein (At5g40550) mRNA, complete cds Length = 1181 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 105 tggtttgtggtgaaggtcatacatttcgataaggaaacaaaagaatttgaagtactggat 164 ||||||||||| || || || || ||||||| |||||||||||| |||||||||| ||| Sbjct: 671 tggtttgtggttaaagttattcacttcgatagagaaacaaaagaagttgaagtacttgat 730 Query: 165 gaggagcctggtgatgatgaaga 187 || || || || ||||||||||| Sbjct: 731 gaagaaccaggagatgatgaaga 753 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 297 gtcttagctgtttatcctggcacaacagcact 328 ||||||||||| ||||| || ||||||||||| Sbjct: 857 gtcttagctgtatatcccgggacaacagcact 888
>gb|U53337.2| Caenorhabditis elegans cosmid R02E12, complete sequence Length = 39151 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 tcgataaggaaacaaaagaatt 151 |||||||||||||||||||||| Sbjct: 724 tcgataaggaaacaaaagaatt 703
>ref|XM_780100.1| PREDICTED: Strongylocentrotus purpuratus similar to solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 (LOC580019), mRNA Length = 1621 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 161 ggatgaggagcctggtgatgatgaagagag 190 |||||||||| |||||||||||||||||| Sbjct: 34 ggatgaggagggtggtgatgatgaagagag 5
>gb|AC103632.8| Mus musculus chromosome 1, clone RP24-555D5, complete sequence Length = 177269 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aaggaaacaaaagaatttgaa 155 ||||||||||||||||||||| Sbjct: 30227 aaggaaacaaaagaatttgaa 30207
>gb|AC123551.5| Mus musculus BAC clone RP24-330P10 from chromosome 1, complete sequence Length = 167597 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aaggaaacaaaagaatttgaa 155 ||||||||||||||||||||| Sbjct: 68397 aaggaaacaaaagaatttgaa 68417
>gb|BC077199.1| Xenopus laevis hypothetical LOC496372, mRNA (cDNA clone MGC:78932 IMAGE:4202853), complete cds Length = 1128 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 304 ctgtttatcctggcacaacagcact 328 |||||||||||||||| |||||||| Sbjct: 702 ctgtttatcctggcaccacagcact 726
>gb|U59223.1|PHU59223 Plexaura homomalla 8(R)-lipoxygenase mRNA, complete cds Length = 2401 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 gaggagcctggtgatgatgaa 185 ||||||||||||||||||||| Sbjct: 234 gaggagcctggtgatgatgaa 254
>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete sequence Length = 189821 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 ttccattttacagagtggttg 450 ||||||||||||||||||||| Sbjct: 104865 ttccattttacagagtggttg 104845
>ref|NM_120969.2| Arabidopsis thaliana ANAC082; transcription factor AT5G09330 (ANAC082) mRNA, complete cds Length = 1728 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tatttgatgatgacgaagag 404 |||||||||||||||||||| Sbjct: 818 tatttgatgatgacgaagag 837
>ref|NM_121792.3| Arabidopsis thaliana calcium:sodium antiporter/ cation:cation antiporter AT5G17860 mRNA, complete cds Length = 1987 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 caagattttcttctgcatct 20 |||||||||||||||||||| Sbjct: 291 caagattttcttctgcatct 310
>gb|BT020263.1| Arabidopsis thaliana At5g09330 gene, complete cds Length = 2026 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tatttgatgatgacgaagag 404 |||||||||||||||||||| Sbjct: 1208 tatttgatgatgacgaagag 1227
>ref|NM_001033950.1| Strongylocentrotus purpuratus egg permeability glycoprotein (ABCB1), mRNA Length = 3990 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 2076 tgatgatgacgaagaggatg 2095
>gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, complete sequence Length = 194641 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagttacctatgtcatatattatt 239 ||||||| |||||||||||||||| Sbjct: 111516 aagttacttatgtcatatattatt 111493
>ref|XM_459173.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D17237g) partial mRNA Length = 2100 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 321 tgatgatgacgaagaggatg 340
>ref|NM_001040465.1| Gallus gallus Dicer1, Dcr-1 homolog (Drosophila) (DICER1), mRNA Length = 6152 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 4272 tgatgatgacgaagaggatg 4291
>ref|XM_457407.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B10659g) partial mRNA Length = 1086 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 459 tgatgatgacgaagaggatg 440
>ref|XM_716947.1| Candida albicans SC5314 hypothetical protein (CaO19_11453), mRNA Length = 744 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 606 tgatgatgacgaagaggatg 625 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 588 tgatgatgacgaagaggatg 607
>ref|XM_716786.1| Candida albicans SC5314 hypothetical protein (CaO19_3970), mRNA Length = 744 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 606 tgatgatgacgaagaggatg 625 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 588 tgatgatgacgaagaggatg 607
>gb|BT013976.1| Lycopersicon esculentum clone 133021F, mRNA sequence Length = 1181 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 142 caaaagaatttgaagtactggatgaggagcctggtgatga 181 |||||||||||||||| | ||||||||||| || ||||| Sbjct: 583 caaaagaatttgaagttttagatgaggagccgggagatga 622
>gb|AY701853.1| Strongylocentrotus purpuratus egg permeability glycoprotein (ABCB1) mRNA, complete cds Length = 3990 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 2076 tgatgatgacgaagaggatg 2095
>ref|XM_743920.1| Aspergillus fumigatus Af293 metalloreductase (Afu7g04970) partial mRNA Length = 1902 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gatgatgaagagagcgccca 196 |||||||||||||||||||| Sbjct: 912 gatgatgaagagagcgccca 893
>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence Length = 138404 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ggcaagtcttagctgtttat 311 |||||||||||||||||||| Sbjct: 123103 ggcaagtcttagctgtttat 123084
>emb|CR727366.2|CNS0GO6K Tetraodon nigroviridis full-length cDNA Length = 1356 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gatgatgacgaagaggatgg 409 |||||||||||||||||||| Sbjct: 210 gatgatgacgaagaggatgg 229
>gb|AC110176.8| Mus musculus, clone RP23-304C24, complete sequence Length = 234714 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 aaggaaacaaaagaatttgaagta 158 ||||||||||||||| |||||||| Sbjct: 156414 aaggaaacaaaagaagttgaagta 156391
>gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, complete sequence Length = 182161 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagttacctatgtcatatattatt 239 ||||||| |||||||||||||||| Sbjct: 162554 aagttacttatgtcatatattatt 162531
>gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940121D9, complete sequence Length = 108830 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gatgatgacgaagaggatgg 409 |||||||||||||||||||| Sbjct: 6236 gatgatgacgaagaggatgg 6217
>ref|XM_786036.1| PREDICTED: Strongylocentrotus purpuratus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 1 (LOC586248), partial mRNA Length = 1011 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 618 tgatgatgacgaagaggatg 637
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 1327430 tgatgatgacgaagaggatg 1327449
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 826000 tgatgatgacgaagaggatg 825981
>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project) Length = 103534 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tatttgatgatgacgaagag 404 |||||||||||||||||||| Sbjct: 34336 tatttgatgatgacgaagag 34317
>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13, complete sequence Length = 136909 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 117000 tgatgatgacgaagaggatg 117019
>gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, complete sequence Length = 175370 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aaacaaaagaatttgaagta 158 |||||||||||||||||||| Sbjct: 96331 aaacaaaagaatttgaagta 96312
>gb|AY142021.1| Arabidopsis thaliana At5g17860/MVA3_210 mRNA, complete cds Length = 1713 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 caagattttcttctgcatct 20 |||||||||||||||||||| Sbjct: 261 caagattttcttctgcatct 280
>dbj|AB253768.1| Gallus gallus Dicer mRNA for Dicer protein, complete cds Length = 6152 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tgatgatgacgaagaggatg 408 |||||||||||||||||||| Sbjct: 4272 tgatgatgacgaagaggatg 4291
>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 84780 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 taaggaaacaaaagaatttgaagt 157 |||||||||||||| ||||||||| Sbjct: 53449 taaggaaacaaaagcatttgaagt 53472
>gb|AF462830.1|AF462830 Arabidopsis thaliana AT5g17860/MVA3_210 mRNA, complete cds Length = 1871 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 caagattttcttctgcatct 20 |||||||||||||||||||| Sbjct: 291 caagattttcttctgcatct 310
>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence Length = 209320 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 agagagctgttccattttacagag 444 ||||||||| |||||||||||||| Sbjct: 28875 agagagctggtccattttacagag 28852
>gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete sequence Length = 144609 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 agagagctgttccattttacagag 444 ||||||||| |||||||||||||| Sbjct: 35651 agagagctggtccattttacagag 35674
>emb|BX831091.1|CNS0A0PM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1728 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 caagattttcttctgcatct 20 |||||||||||||||||||| Sbjct: 254 caagattttcttctgcatct 273
>emb|BX832883.1|CNS0A0FX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL19ZG11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1769 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 caagattttcttctgcatct 20 |||||||||||||||||||| Sbjct: 244 caagattttcttctgcatct 263
>gb|AC084447.1|AC084447 Caenorhabditis briggsae cosmid CB019G12, complete sequence Length = 88839 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tcgataaggaaacaaaagaa 149 |||||||||||||||||||| Sbjct: 24760 tcgataaggaaacaaaagaa 24741
>dbj|AB011480.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPI7 Length = 40548 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 caagattttcttctgcatct 20 |||||||||||||||||||| Sbjct: 4639 caagattttcttctgcatct 4620
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 297 gtcttagctgtttatcctggcacaacagcact 328 ||||||||||| ||||| || ||||||||||| Sbjct: 17481 gtcttagctgtatatcccgggacaacagcact 17512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,978,781 Number of Sequences: 3902068 Number of extensions: 4978781 Number of successful extensions: 105508 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105348 Number of HSP's gapped (non-prelim): 159 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)