| Clone Name | bags30d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477566.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1081 Score = 658 bits (332), Expect = 0.0 Identities = 558/632 (88%), Gaps = 1/632 (0%) Strand = Plus / Plus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgatacc 61 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 239 ccgacctcttcgtctactactgcaag-cactgcgcctcccacgtcctcatcaccgatacc 297 Query: 62 ctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataagacaaag 121 | |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct: 298 caattgcagaaaatgccaaagaggaagactgacagagcacatgtactagacaagaaaaaa 357 Query: 122 catcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacgtggagaagga 181 ||||| | ||||| |||||||| || |||||||| || |||||||||| |||||||| Sbjct: 358 catctctcaaggctaaatgtgaaggaggcaggaaaggtcctgttgaaacggggagaaggg 417 Query: 182 aaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtttgctaccga 241 || || |||||||||||||| |||| || ||||||||| |||||| ||||| |||||| Sbjct: 418 aagcttgaaaagcagttccgtatgagttgtttgggatgcggccttttcgtttgttaccga 477 Query: 242 tcggaggaagatttggagcttgctccttatatatatgttgttgatggagcactgagttct 301 || || || || |||||||| ||||| | ||||||||||||||||||||||| || || Sbjct: 478 tcagaagaggagttggagctagctccattcatatatgttgttgatggagcactaagctca 537 Query: 302 gtggcggctgagacaaatccacatgatgctcctgtacccccttgcattacacagttgcag 361 ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||| | Sbjct: 538 gtggcggctgaaacaaatccacatgatgcacctgtaccaccttgcatcacacaattggaa 597 Query: 362 ggtggacttgtccaagttgccattgaagtagaagaccgagcacaacgttcagcaataaca 421 ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||||||| Sbjct: 598 ggtggccttgtccaagtagccattgaggttgaagaccgggcacaacggtcagcaataaca 657 Query: 422 agagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcc 481 |||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||| || Sbjct: 658 agagtgaatgctgatgatgttcgagtaacagttgctgctcctgctgctcgaggggaagca 717 Query: 482 aacaacgagttgctagaatttatgggcaaggtgcttggcttaagattgagtcagatgacc 541 |||||||| | ||||| || ||||||||||| |||||||||||| | |||||||||||| Sbjct: 718 aacaacgaactactagagttcatgggcaaggttcttggcttaagactcagtcagatgacc 777 Query: 542 cttcaaaggggatggaataataaatcaaagcttctgattgttgaggatttgtctgcacga 601 |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 778 cttcaaagaggatggaataataagtcgaagcttctgattgttgaagatttgtcagcacgg 837 Query: 602 caagtttatgagaagctcctagaagctgtcca 633 ||||| |||||||||||||||||||||||||| Sbjct: 838 caagtgtatgagaagctcctagaagctgtcca 869
>ref|XM_506269.1| PREDICTED Oryza sativa (japonica cultivar-group), B1120F06.103 mRNA Length = 1083 Score = 658 bits (332), Expect = 0.0 Identities = 558/632 (88%), Gaps = 1/632 (0%) Strand = Plus / Plus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgatacc 61 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 230 ccgacctcttcgtctactactgcaag-cactgcgcctcccacgtcctcatcaccgatacc 288 Query: 62 ctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataagacaaag 121 | |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct: 289 caattgcagaaaatgccaaagaggaagactgacagagcacatgtactagacaagaaaaaa 348 Query: 122 catcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacgtggagaagga 181 ||||| | ||||| |||||||| || |||||||| || |||||||||| |||||||| Sbjct: 349 catctctcaaggctaaatgtgaaggaggcaggaaaggtcctgttgaaacggggagaaggg 408 Query: 182 aaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtttgctaccga 241 || || |||||||||||||| |||| || ||||||||| |||||| ||||| |||||| Sbjct: 409 aagcttgaaaagcagttccgtatgagttgtttgggatgcggccttttcgtttgttaccga 468 Query: 242 tcggaggaagatttggagcttgctccttatatatatgttgttgatggagcactgagttct 301 || || || || |||||||| ||||| | ||||||||||||||||||||||| || || Sbjct: 469 tcagaagaggagttggagctagctccattcatatatgttgttgatggagcactaagctca 528 Query: 302 gtggcggctgagacaaatccacatgatgctcctgtacccccttgcattacacagttgcag 361 ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||| | Sbjct: 529 gtggcggctgaaacaaatccacatgatgcacctgtaccaccttgcatcacacaattggaa 588 Query: 362 ggtggacttgtccaagttgccattgaagtagaagaccgagcacaacgttcagcaataaca 421 ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||||||| Sbjct: 589 ggtggccttgtccaagtagccattgaggttgaagaccgggcacaacggtcagcaataaca 648 Query: 422 agagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcc 481 |||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||| || Sbjct: 649 agagtgaatgctgatgatgttcgagtaacagttgctgctcctgctgctcgaggggaagca 708 Query: 482 aacaacgagttgctagaatttatgggcaaggtgcttggcttaagattgagtcagatgacc 541 |||||||| | ||||| || ||||||||||| |||||||||||| | |||||||||||| Sbjct: 709 aacaacgaactactagagttcatgggcaaggttcttggcttaagactcagtcagatgacc 768 Query: 542 cttcaaaggggatggaataataaatcaaagcttctgattgttgaggatttgtctgcacga 601 |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 769 cttcaaagaggatggaataataagtcgaagcttctgattgttgaagatttgtcagcacgg 828 Query: 602 caagtttatgagaagctcctagaagctgtcca 633 ||||| |||||||||||||||||||||||||| Sbjct: 829 caagtgtatgagaagctcctagaagctgtcca 860
>dbj|AK059375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F06, full insert sequence Length = 1081 Score = 658 bits (332), Expect = 0.0 Identities = 558/632 (88%), Gaps = 1/632 (0%) Strand = Plus / Plus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgatacc 61 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 239 ccgacctcttcgtctactactgcaag-cactgcgcctcccacgtcctcatcaccgatacc 297 Query: 62 ctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataagacaaag 121 | |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct: 298 caattgcagaaaatgccaaagaggaagactgacagagcacatgtactagacaagaaaaaa 357 Query: 122 catcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacgtggagaagga 181 ||||| | ||||| |||||||| || |||||||| || |||||||||| |||||||| Sbjct: 358 catctctcaaggctaaatgtgaaggaggcaggaaaggtcctgttgaaacggggagaaggg 417 Query: 182 aaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtttgctaccga 241 || || |||||||||||||| |||| || ||||||||| |||||| ||||| |||||| Sbjct: 418 aagcttgaaaagcagttccgtatgagttgtttgggatgcggccttttcgtttgttaccga 477 Query: 242 tcggaggaagatttggagcttgctccttatatatatgttgttgatggagcactgagttct 301 || || || || |||||||| ||||| | ||||||||||||||||||||||| || || Sbjct: 478 tcagaagaggagttggagctagctccattcatatatgttgttgatggagcactaagctca 537 Query: 302 gtggcggctgagacaaatccacatgatgctcctgtacccccttgcattacacagttgcag 361 ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||| | Sbjct: 538 gtggcggctgaaacaaatccacatgatgcacctgtaccaccttgcatcacacaattggaa 597 Query: 362 ggtggacttgtccaagttgccattgaagtagaagaccgagcacaacgttcagcaataaca 421 ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||||||| Sbjct: 598 ggtggccttgtccaagtagccattgaggttgaagaccgggcacaacggtcagcaataaca 657 Query: 422 agagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcc 481 |||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||| || Sbjct: 658 agagtgaatgctgatgatgttcgagtaacagttgctgctcctgctgctcgaggggaagca 717 Query: 482 aacaacgagttgctagaatttatgggcaaggtgcttggcttaagattgagtcagatgacc 541 |||||||| | ||||| || ||||||||||| |||||||||||| | |||||||||||| Sbjct: 718 aacaacgaactactagagttcatgggcaaggttcttggcttaagactcagtcagatgacc 777 Query: 542 cttcaaaggggatggaataataaatcaaagcttctgattgttgaggatttgtctgcacga 601 |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 778 cttcaaagaggatggaataataagtcgaagcttctgattgttgaagatttgtcagcacgg 837 Query: 602 caagtttatgagaagctcctagaagctgtcca 633 ||||| |||||||||||||||||||||||||| Sbjct: 838 caagtgtatgagaagctcctagaagctgtcca 869
>dbj|AK102836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109K02, full insert sequence Length = 1083 Score = 650 bits (328), Expect = 0.0 Identities = 557/632 (88%), Gaps = 1/632 (0%) Strand = Plus / Plus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgatacc 61 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 230 ccgacctcttcgtctactactgcaag-cactgcgcctcccacgtcctcatcaccgatacc 288 Query: 62 ctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataagacaaag 121 | |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct: 289 caattgcagaaaatgccaaagaggaagactgacagagcacatgtactagacaagaaaaaa 348 Query: 122 catcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacgtggagaagga 181 ||||| | ||||| |||||||| || |||||||| || |||||||||| |||||||| Sbjct: 349 catctctcaaggctaaatgtgaaggaggcaggaaaggtcctgttgaaacggggagaaggg 408 Query: 182 aaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtttgctaccga 241 || || |||||||||||||| |||| || ||||||||| |||||| ||||| |||||| Sbjct: 409 aagcttgaaaagcagttccgtatgagttgtttgggatgcggccttttcgtttgttaccga 468 Query: 242 tcggaggaagatttggagcttgctccttatatatatgttgttgatggagcactgagttct 301 || || || || |||||||| ||||| | ||||||||||||||||||||||| || || Sbjct: 469 tcagaagaggagttggagctagctccattcatatatgttgttgatggagcactaagctca 528 Query: 302 gtggcggctgagacaaatccacatgatgctcctgtacccccttgcattacacagttgcag 361 ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||| | Sbjct: 529 gtggcggctgaaacaaatccacatgatgcacctgtaccaccttgcatcacacaattggaa 588 Query: 362 ggtggacttgtccaagttgccattgaagtagaagaccgagcacaacgttcagcaataaca 421 ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||||||| Sbjct: 589 ggtggccttgtccaagtagccattgaggttgaagaccgggcacaacggtcagcaataaca 648 Query: 422 agagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcc 481 |||||||| |||| |||||||||||| |||| ||||| ||||||||||| ||||| || Sbjct: 649 agagtgaatgctggtgatgttcgagtaacagttgctgctcctgctgctcgaggggaagca 708 Query: 482 aacaacgagttgctagaatttatgggcaaggtgcttggcttaagattgagtcagatgacc 541 |||||||| | ||||| || ||||||||||| |||||||||||| | |||||||||||| Sbjct: 709 aacaacgaactactagagttcatgggcaaggttcttggcttaagactcagtcagatgacc 768 Query: 542 cttcaaaggggatggaataataaatcaaagcttctgattgttgaggatttgtctgcacga 601 |||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 769 cttcaaagaggatggaataataagtcgaagcttctgattgttgaagatttgtcagcacgg 828 Query: 602 caagtttatgagaagctcctagaagctgtcca 633 ||||| |||||||||||||||||||||||||| Sbjct: 829 caagtgtatgagaagctcctagaagctgtcca 860
>gb|AY110156.1| Zea mays CL19935_1 mRNA sequence Length = 1173 Score = 611 bits (308), Expect = e-171 Identities = 553/635 (87%), Gaps = 1/635 (0%) Strand = Plus / Minus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgatacc 61 ||||||| ||||| |||||||||||| ||||||||||| || |||||||||||||||||| Sbjct: 965 ccgaccttttcgtatactactgcaag-cactgcgcctcacatgtcctcatcaccgatacc 907 Query: 62 ctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataagacaaag 121 | ||||||||||||||| ||| | |||||||||||| |||||||| |||| ||| | ||| Sbjct: 906 caattgcagaaaatgcccaagcgaaagactgacagaacacatgttttagacaaggctaag 847 Query: 122 catcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacgtggagaagga 181 |||||| | ||||| ||||| || || ||||||||| | ||||||||||||| |||||| Sbjct: 846 catctttcaaggctaaatgttaaggaggcaggaaaagtaatgttgaaacgtggtgaagga 787 Query: 182 aaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtttgctaccga 241 || || ||||||||||| ||||||| ||| |||||||| |||| ||||| |||||| Sbjct: 786 aagcttgaaaagcagtttcgcatgagctgtgtgggatgtgaccnnnnngtttgttaccga 727 Query: 242 tcggaggaagatttggagcttgctccttatatatatgttgttgatggagcactgagttct 301 || || || ||| ||||| |||| |||| ||||| ||| |||| |||||||||||||| Sbjct: 726 tcagaagaggatctggaggttgcccctttcatatacgttattgacggagcactgagttca 667 Query: 302 gtggcggctgagacaaatccacatgatgctcctgtacccccttgcattacacagttgcag 361 || || |||||||||||||||||||||||||||||||| |||||||| ||||| || | Sbjct: 666 gttgctgctgagacaaatccacatgatgctcctgtacctccttgcatcacacaactggaa 607 Query: 362 ggtggacttgtccaagttgccattgaagtagaagaccgagcacaacgttcagcaataaca 421 |||||| |||||||||| ||||||||||| |||||||| ||||||||||||||| ||||| Sbjct: 606 ggtggagttgtccaagtagccattgaagtggaagaccgggcacaacgttcagcagtaaca 547 Query: 422 agagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcc 481 |||||||| ||||| || ||||||||| | |||||||||| ||||||||| ||||| || Sbjct: 546 agagtgaatgctgatgacgttcgagtaacggtagctgcccttgctgctcgaggggaagct 487 Query: 482 aacaacgagttgctagaatttatgggcaaggtgcttggcttaagattgagtcagatgacc 541 |||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||| Sbjct: 486 aacagtgagttgctagaatttatgggcaaggttcttggcctaagattgactcagatgacc 427 Query: 542 cttcaaaggggatggaataataaatcaaagcttctgattgttgaggatttgtctgcacga 601 |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 426 cttcaaagaggatggaataacaaatcgaagcttctaattgttgaggatttgtctgcacgg 367 Query: 602 caagtttatgagaagctcctagaagctgtccaacc 636 ||||| ||||||||||||||||||||||| ||||| Sbjct: 366 caagtgtatgagaagctcctagaagctgtacaacc 332
>ref|NM_125739.2| Arabidopsis thaliana unknown protein AT5G63440 transcript variant AT5G63440.2 mRNA, complete cds Length = 944 Score = 127 bits (64), Expect = 5e-26 Identities = 271/340 (79%) Strand = Plus / Plus Query: 279 ttgttgatggagcactgagttctgtggcggctgagacaaatccacatgatgctcctgtac 338 |||||||||||||||| ||| |||| || || || || || ||||| ||||| || |||| Sbjct: 373 ttgttgatggagcacttagtgctgttgctgcagaaaccaacccacaggatgcaccagtac 432 Query: 339 ccccttgcattacacagttgcagggtggacttgtccaagttgccattgaagtagaagacc 398 | || |||||| |||| | | ||||||||||| || ||||| || ||||| ||||||| Sbjct: 433 ctccctgcatttcacaactcgacggtggacttgttcaggttgcaatagaagtggaagacc 492 Query: 399 gagcacaacgttcagcaataacaagagtgaacgctgacgatgttcgagtagcagtagctg 458 | ||||||||||||||||| ||||| || || ||||| |||||||| || | || |||| Sbjct: 493 gtgcacaacgttcagcaatcacaagggtaaatgctgatgatgttcgtgtgactgttgctg 552 Query: 459 cccctgctgctcggggggaggccaacaacgagttgctagaatttatgggcaaggtgcttg 518 | || || || || ||||| || ||||||||| | || ||||| ||||| | ||| |||| Sbjct: 553 caccagcagcccgtggggaagctaacaacgagcttctggaattcatgggaagggttcttg 612 Query: 519 gcttaagattgagtcagatgacccttcaaaggggatggaataataaatcaaagcttctga 578 | ||||| ||||| |||||||| || ||||| || ||||||| |||||||| || || Sbjct: 613 gtttaaggttgagccagatgactctccaaagaggttggaatagcaaatcaaaactcctcg 672 Query: 579 ttgttgaggatttgtctgcacgacaagtttatgagaagct 618 | || |||||||| || || ||||||| ||||||||||| Sbjct: 673 tggtcgaggatttatcagctagacaagtgtatgagaagct 712 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 7 ctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgataccctatt 66 |||||||| ||||||||||| ||||| | || || ||||| ||||| ||||||| || Sbjct: 102 ctcttcgtatactactgcaa-acactgtggttctcatgtccttatcactgatacccagtt 160 Query: 67 gcagaaaatgccaaagaggaagactgacag 96 |||||| |||||||| |||||||| ||||| Sbjct: 161 gcagaagatgccaaaaaggaagaccgacag 190
>dbj|AK118693.1| Arabidopsis thaliana At5g63440 mRNA for unknown protein, complete cds, clone: RAFL19-95-P15 Length = 943 Score = 127 bits (64), Expect = 5e-26 Identities = 271/340 (79%) Strand = Plus / Plus Query: 279 ttgttgatggagcactgagttctgtggcggctgagacaaatccacatgatgctcctgtac 338 |||||||||||||||| ||| |||| || || || || || ||||| ||||| || |||| Sbjct: 373 ttgttgatggagcacttagtgctgttgctgcagaaaccaacccacaggatgcaccagtac 432 Query: 339 ccccttgcattacacagttgcagggtggacttgtccaagttgccattgaagtagaagacc 398 | || |||||| |||| | | ||||||||||| || ||||| || ||||| ||||||| Sbjct: 433 ctccctgcatttcacaactcgacggtggacttgttcaggttgcaatagaagtggaagacc 492 Query: 399 gagcacaacgttcagcaataacaagagtgaacgctgacgatgttcgagtagcagtagctg 458 | ||||||||||||||||| ||||| || || ||||| |||||||| || | || |||| Sbjct: 493 gtgcacaacgttcagcaatcacaagggtaaatgctgatgatgttcgtgtgactgttgctg 552 Query: 459 cccctgctgctcggggggaggccaacaacgagttgctagaatttatgggcaaggtgcttg 518 | || || || || ||||| || ||||||||| | || ||||| ||||| | ||| |||| Sbjct: 553 caccagcagcccgtggggaagctaacaacgagcttctggaattcatgggaagggttcttg 612 Query: 519 gcttaagattgagtcagatgacccttcaaaggggatggaataataaatcaaagcttctga 578 | ||||| ||||| |||||||| || ||||| || ||||||| |||||||| || || Sbjct: 613 gtttaaggttgagccagatgactctccaaagaggttggaatagcaaatcaaaactcctcg 672 Query: 579 ttgttgaggatttgtctgcacgacaagtttatgagaagct 618 | || |||||||| || || ||||||| ||||||||||| Sbjct: 673 tggtcgaggatttatcagctagacaagtgtatgagaagct 712 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 7 ctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgataccctatt 66 |||||||| ||||||||||| ||||| | || || ||||| ||||| ||||||| || Sbjct: 102 ctcttcgtatactactgcaa-acactgtggttctcatgtccttatcactgatacccagtt 160 Query: 67 gcagaaaatgccaaagaggaagactgacag 96 |||||| |||||||| |||||||| ||||| Sbjct: 161 gcagaagatgccaaaaaggaagaccgacag 190
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 123 bits (62), Expect = 8e-25 Identities = 131/154 (85%) Strand = Plus / Minus Query: 173 ggagaaggaaaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtt 232 |||||||| || || |||||||||||||| |||| || ||||||||| |||||| ||| Sbjct: 11547390 ggagaagggaagcttgaaaagcagttccgtatgagttgtttgggatgcggccttttcgtt 11547331 Query: 233 tgctaccgatcggaggaagatttggagcttgctccttatatatatgttgttgatggagca 292 || |||||||| || || || |||||||| ||||| | ||||||||||||||||||||| Sbjct: 11547330 tgttaccgatcagaagaggagttggagctagctccattcatatatgttgttgatggagca 11547271 Query: 293 ctgagttctgtggcggctgagacaaatccacatg 326 || || || ||||||||||| ||||||||||||| Sbjct: 11547270 ctaagctcagtggcggctgaaacaaatccacatg 11547237 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 56 gataccctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataag 115 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 11548410 gatacccaattgcagaaaatgccaaagaggaagactgacagagcacatgtactagacaag 11548351 Query: 116 acaaagcatcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacg 171 | ||| ||||| | ||||| |||||||| || |||||||| || |||||||||| Sbjct: 11548350 aaaaaacatctctcaaggctaaatgtgaaggaggcaggaaaggtcctgttgaaacg 11548295 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 326 gatgctcctgtacccccttgcattacacagttgcagggtggacttgtccaagttgccatt 385 ||||| |||||||| |||||||| ||||| ||| | ||||| ||||||||||| |||||| Sbjct: 11547142 gatgcacctgtaccaccttgcatcacacaattggaaggtggccttgtccaagtagccatt 11547083 Query: 386 gaagtagaagaccgagcacaacgttcagcaataacaag 423 || || |||||||| |||||||| |||||||||||||| Sbjct: 11547082 gaggttgaagaccgggcacaacggtcagcaataacaag 11547045 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 510 aggtgcttggcttaagattgagtcagatgacccttcaaaggggatggaataataaatcaa 569 |||| |||||||||||| | |||||||||||||||||||| |||||||||||||| || | Sbjct: 11546620 aggttcttggcttaagactcagtcagatgacccttcaaagaggatggaataataagtcga 11546561 Query: 570 agcttctgattgt 582 ||||||||||||| Sbjct: 11546560 agcttctgattgt 11546548 Score = 93.7 bits (47), Expect = 7e-16 Identities = 54/55 (98%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccg 56 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 11550049 ccgacctcttcgtctactactgcaag-cactgcgcctcccacgtcctcatcaccg 11549996 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 423 gagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcca 482 ||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||| || | Sbjct: 11546865 gagtgaatgctgatgatgttcgagtaacagttgctgctcctgctgctcgaggggaagcaa 11546806 Query: 483 acaacgagttgctagaatttatgggcaaggtg 514 ||||||| | ||||| || |||||||||||| Sbjct: 11546805 acaacgaactactagagttcatgggcaaggtg 11546774 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 581 gttgaggatttgtctgcacgacaagtttatgagaagctcctagaagctgtcca 633 ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 11546466 gttgaagatttgtcagcacggcaagtgtatgagaagctcctagaagctgtcca 11546414
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 123 bits (62), Expect = 8e-25 Identities = 131/154 (85%) Strand = Plus / Minus Query: 173 ggagaaggaaaactcgaaaagcagttccgcatgacctgcgtgggatgcgacctttttgtt 232 |||||||| || || |||||||||||||| |||| || ||||||||| |||||| ||| Sbjct: 111048 ggagaagggaagcttgaaaagcagttccgtatgagttgtttgggatgcggccttttcgtt 110989 Query: 233 tgctaccgatcggaggaagatttggagcttgctccttatatatatgttgttgatggagca 292 || |||||||| || || || |||||||| ||||| | ||||||||||||||||||||| Sbjct: 110988 tgttaccgatcagaagaggagttggagctagctccattcatatatgttgttgatggagca 110929 Query: 293 ctgagttctgtggcggctgagacaaatccacatg 326 || || || ||||||||||| ||||||||||||| Sbjct: 110928 ctaagctcagtggcggctgaaacaaatccacatg 110895 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 56 gataccctattgcagaaaatgccaaagaggaagactgacagagcacatgttctagataag 115 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 112068 gatacccaattgcagaaaatgccaaagaggaagactgacagagcacatgtactagacaag 112009 Query: 116 acaaagcatcttgcgaggctgaatgtgaaagatgcaggaaaaatcttgttgaaacg 171 | ||| ||||| | ||||| |||||||| || |||||||| || |||||||||| Sbjct: 112008 aaaaaacatctctcaaggctaaatgtgaaggaggcaggaaaggtcctgttgaaacg 111953 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 326 gatgctcctgtacccccttgcattacacagttgcagggtggacttgtccaagttgccatt 385 ||||| |||||||| |||||||| ||||| ||| | ||||| ||||||||||| |||||| Sbjct: 110800 gatgcacctgtaccaccttgcatcacacaattggaaggtggccttgtccaagtagccatt 110741 Query: 386 gaagtagaagaccgagcacaacgttcagcaataacaag 423 || || |||||||| |||||||| |||||||||||||| Sbjct: 110740 gaggttgaagaccgggcacaacggtcagcaataacaag 110703 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 510 aggtgcttggcttaagattgagtcagatgacccttcaaaggggatggaataataaatcaa 569 |||| |||||||||||| | |||||||||||||||||||| |||||||||||||| || | Sbjct: 110278 aggttcttggcttaagactcagtcagatgacccttcaaagaggatggaataataagtcga 110219 Query: 570 agcttctgattgt 582 ||||||||||||| Sbjct: 110218 agcttctgattgt 110206 Score = 93.7 bits (47), Expect = 7e-16 Identities = 54/55 (98%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 2 ccgacctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccg 56 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 113707 ccgacctcttcgtctactactgcaag-cactgcgcctcccacgtcctcatcaccg 113654 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 423 gagtgaacgctgacgatgttcgagtagcagtagctgcccctgctgctcggggggaggcca 482 ||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||| || | Sbjct: 110523 gagtgaatgctgatgatgttcgagtaacagttgctgctcctgctgctcgaggggaagcaa 110464 Query: 483 acaacgagttgctagaatttatgggcaaggtg 514 ||||||| | ||||| || |||||||||||| Sbjct: 110463 acaacgaactactagagttcatgggcaaggtg 110432 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 581 gttgaggatttgtctgcacgacaagtttatgagaagctcctagaagctgtcca 633 ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 110124 gttgaagatttgtcagcacggcaagtgtatgagaagctcctagaagctgtcca 110072
>ref|NM_180925.1| Arabidopsis thaliana unknown protein AT5G63440 transcript variant AT5G63440.1 mRNA, complete cds Length = 1090 Score = 91.7 bits (46), Expect = 3e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 279 ttgttgatggagcactgagttctgtggcggctgagacaaatccacatgatgctcctgtac 338 |||||||||||||||| ||| |||| || || || || || ||||| ||||| || |||| Sbjct: 373 ttgttgatggagcacttagtgctgttgctgcagaaaccaacccacaggatgcaccagtac 432 Query: 339 ccccttgcattacacagttgcagggtggacttgtccaagttgccattgaagtagaagacc 398 | || |||||| |||| | | ||||||||||| || ||||| || ||||| ||||||| Sbjct: 433 ctccctgcatttcacaactcgacggtggacttgttcaggttgcaatagaagtggaagacc 492 Query: 399 gagcacaacgttcagcaataacaagagtgaacgctgacgatgttcg 444 | ||||||||||||||||| ||||| || || ||||| |||||||| Sbjct: 493 gtgcacaacgttcagcaatcacaagggtaaatgctgatgatgttcg 538 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 7 ctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgataccctatt 66 |||||||| ||||||||||| ||||| | || || ||||| ||||| ||||||| || Sbjct: 102 ctcttcgtatactactgcaa-acactgtggttctcatgtccttatcactgatacccagtt 160 Query: 67 gcagaaaatgccaaagaggaagactgacag 96 |||||| |||||||| |||||||| ||||| Sbjct: 161 gcagaagatgccaaaaaggaagaccgacag 190 Score = 50.1 bits (25), Expect = 0.009 Identities = 88/109 (80%) Strand = Plus / Plus Query: 510 aggtgcttggcttaagattgagtcagatgacccttcaaaggggatggaataataaatcaa 569 |||| ||||| ||||| ||||| |||||||| || ||||| || ||||||| ||||||| Sbjct: 732 aggttcttggtttaaggttgagccagatgactctccaaagaggttggaatagcaaatcaa 791 Query: 570 agcttctgattgttgaggatttgtctgcacgacaagtttatgagaagct 618 | || || | || |||||||| || || ||||||| ||||||||||| Sbjct: 792 aactcctcgtggtcgaggatttatcagctagacaagtgtatgagaagct 840
>gb|AY133627.1| Arabidopsis thaliana AT5g63440/MLE2_7 mRNA, complete cds Length = 618 Score = 91.7 bits (46), Expect = 3e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 279 ttgttgatggagcactgagttctgtggcggctgagacaaatccacatgatgctcctgtac 338 |||||||||||||||| ||| |||| || || || || || ||||| ||||| || |||| Sbjct: 338 ttgttgatggagcacttagtgctgttgctgcagaaaccaacccacaggatgcaccagtac 397 Query: 339 ccccttgcattacacagttgcagggtggacttgtccaagttgccattgaagtagaagacc 398 | || |||||| |||| | | ||||||||||| || ||||| || ||||| ||||||| Sbjct: 398 ctccctgcatttcacaactcgacggtggacttgttcaggttgcaatagaagtggaagacc 457 Query: 399 gagcacaacgttcagcaataacaagagtgaacgctgacgatgttcg 444 | ||||||||||||||||| ||||| || || ||||| |||||||| Sbjct: 458 gtgcacaacgttcagcaatcacaagggtaaatgctgatgatgttcg 503 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 7 ctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgataccctatt 66 |||||||| ||||||||||| ||||| | || || ||||| ||||| ||||||| || Sbjct: 67 ctcttcgtatactactgcaa-acactgtggttctcatgtccttatcactgatacccagtt 125 Query: 67 gcagaaaatgccaaagaggaagactgacag 96 |||||| |||||||| |||||||| ||||| Sbjct: 126 gcagaagatgccaaaaaggaagaccgacag 155
>gb|AF428410.1|AF428410 Arabidopsis thaliana AT5g63440/MLE2_7 mRNA, complete cds Length = 1091 Score = 91.7 bits (46), Expect = 3e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 279 ttgttgatggagcactgagttctgtggcggctgagacaaatccacatgatgctcctgtac 338 |||||||||||||||| ||| |||| || || || || || ||||| ||||| || |||| Sbjct: 373 ttgttgatggagcacttagtgctgttgctgcagaaaccaacccacaggatgcaccagtac 432 Query: 339 ccccttgcattacacagttgcagggtggacttgtccaagttgccattgaagtagaagacc 398 | || |||||| |||| | | ||||||||||| || ||||| || ||||| ||||||| Sbjct: 433 ctccctgcatttcacaactcgacggtggacttgttcaggttgcaatagaagtggaagacc 492 Query: 399 gagcacaacgttcagcaataacaagagtgaacgctgacgatgttcg 444 | ||||||||||||||||| ||||| || || ||||| |||||||| Sbjct: 493 gtgcacaacgttcagcaatcacaagggtaaatgctgatgatgttcg 538 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 7 ctcttcgtctactactgcaagncactgcgcctcccacgtcctcatcaccgataccctatt 66 |||||||| ||||||||||| ||||| | || || ||||| ||||| ||||||| || Sbjct: 102 ctcttcgtatactactgcaa-acactgtggttctcatgtccttatcactgatacccagtt 160 Query: 67 gcagaaaatgccaaagaggaagactgacag 96 |||||| |||||||| |||||||| ||||| Sbjct: 161 gcagaagatgccaaaaaggaagaccgacag 190 Score = 50.1 bits (25), Expect = 0.009 Identities = 88/109 (80%) Strand = Plus / Plus Query: 510 aggtgcttggcttaagattgagtcagatgacccttcaaaggggatggaataataaatcaa 569 |||| ||||| ||||| ||||| |||||||| || ||||| || ||||||| ||||||| Sbjct: 732 aggttcttggtttaaggttgagccagatgactctccaaagaggttggaatagcaaatcaa 791 Query: 570 agcttctgattgttgaggatttgtctgcacgacaagtttatgagaagct 618 | || || | || |||||||| || || ||||||| ||||||||||| Sbjct: 792 aactcctcgtggtcgaggatttatcagctagacaagtgtatgagaagct 840
>gb|BT013432.1| Lycopersicon esculentum clone 132072F, mRNA sequence Length = 2028 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Plus Query: 272 atatatgttgttgatggagcactgagttctgtggcggctgagacaaatccacatgatgct 331 |||||||| |||||||| ||||| || || | |||||||||||||||||||| |||||| Sbjct: 1143 atatatgtagttgatggggcacttagcactattgcggctgagacaaatccacaggatgct 1202 Query: 332 cctgtacccccttgcattacacagttgcagggtggacttgtccaagttgccattgaagta 391 |||||||| || || || ||||||| | ||||| ||||| ||||| || || ||||| Sbjct: 1203 cctgtaccaccatgtatatcacagttagaaggtggccttgtgcaagtggcgatagaagtc 1262 Query: 392 gaagaccgagcacaacgttcagcaataacaagagtgaacgctgacgatgttcg 444 || ||||| || || || || ||||| ||||||||||| || || |||||||| Sbjct: 1263 gaggaccgtgcccagcggtctgcaattacaagagtgaatgcagatgatgttcg 1315 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 532 tcagatgacccttcaaaggggatggaataataaatcaaagcttct 576 ||||||||| || ||||| |||||||||| |||||||||||||| Sbjct: 1403 tcagatgactctccaaagaggatggaatagcaaatcaaagcttct 1447 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 attgcagaaaatgccaaagaggaa 87 |||||||||||||||||| ||||| Sbjct: 935 attgcagaaaatgccaaaaaggaa 958
>dbj|AB007649.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLE2 Length = 58527 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 362 ggtggacttgtccaagttgccattgaagtagaagaccgagcacaacgttcagcaataaca 421 ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| ||| Sbjct: 19148 ggtggacttgttcaggttgcaatagaagtggaagaccgtgcacaacgttcagcaatcaca 19207 Query: 422 ag 423 || Sbjct: 19208 ag 19209
>gb|AY111948.1| Zea mays CL56048_1 mRNA sequence Length = 1233 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 581 gttgaggatttgtctgcacgacaagtttatgagaagctcctagaagctgtccaacc 636 ||||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||| Sbjct: 375 gttgaggatttgtctacacaacaagtgaatgataagctcctagaagctgtacaacc 320
>gb|AC066590.5| Homo sapiens chromosome 3 clone RP11-324K11 map 3p, complete sequence Length = 185895 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 gaggaagactgacagagcacat 103 |||||||||||||||||||||| Sbjct: 61461 gaggaagactgacagagcacat 61482
>gb|AC087857.3| Homo sapiens chromosome 3 clone RP11-149E15 map 3p, complete sequence Length = 173606 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 gaggaagactgacagagcacat 103 |||||||||||||||||||||| Sbjct: 129617 gaggaagactgacagagcacat 129638
>gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, complete sequence Length = 184094 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 atggagcactgagttctgtgg 305 ||||||||||||||||||||| Sbjct: 174917 atggagcactgagttctgtgg 174937
>ref|XM_883092.1| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 7 (LOC512144), mRNA Length = 3242 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 1422 gccgacctcttcgtctactac 1442
>ref|XM_883086.1| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 6 (LOC512144), mRNA Length = 3155 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 1335 gccgacctcttcgtctactac 1355
>ref|XM_883082.1| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 5 (LOC512144), mRNA Length = 2708 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 888 gccgacctcttcgtctactac 908
>ref|XM_883078.1| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 4 (LOC512144), mRNA Length = 2600 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 1419 gccgacctcttcgtctactac 1439
>ref|XM_883074.1| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 3 (LOC512144), mRNA Length = 2202 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 382 gccgacctcttcgtctactac 402
>ref|XM_589593.2| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 1 (LOC512144), mRNA Length = 2059 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 1379 gccgacctcttcgtctactac 1399
>ref|XM_869962.1| PREDICTED: Bos taurus similar to CG3338-PA, transcript variant 2 (LOC512144), mRNA Length = 3239 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gccgacctcttcgtctactac 21 ||||||||||||||||||||| Sbjct: 1419 gccgacctcttcgtctactac 1439
>gb|AC007070.5| Arabidopsis thaliana chromosome 2 clone T22F11 map GPA1, complete sequence Length = 86017 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 tgtgaaagatgcaggaaaaat 159 ||||||||||||||||||||| Sbjct: 36577 tgtgaaagatgcaggaaaaat 36597
>dbj|AK149300.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930015N16 product:unclassifiable, full insert sequence Length = 2380 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aagaggaagactgacagagca 100 ||||||||||||||||||||| Sbjct: 614 aagaggaagactgacagagca 634
>gb|AC133462.18| Mus musculus chromosome 1, clone RP24-441D8, complete sequence Length = 140132 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 atggagcactgagttctgtgg 305 ||||||||||||||||||||| Sbjct: 17694 atggagcactgagttctgtgg 17714
>gb|AC107773.9| Mus musculus chromosome 18, clone RP23-102H15, complete sequence Length = 250096 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 gccaaagaggaagactgacag 96 ||||||||||||||||||||| Sbjct: 152530 gccaaagaggaagactgacag 152510
>dbj|AP003151.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-340N5, complete sequences Length = 160143 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aagaggaagactgacagagca 100 ||||||||||||||||||||| Sbjct: 57905 aagaggaagactgacagagca 57925
>gb|AC173208.2| Mus musculus BAC clone RP24-335A2 from chromosome 16, complete sequence Length = 234813 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aagaggaagactgacagagca 100 ||||||||||||||||||||| Sbjct: 203320 aagaggaagactgacagagca 203340
>gb|AY772454.1| Zea mays RFLP probe umc109 (CBM 9.01) genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 actgcgcctcccacgtcctc 49 |||||||||||||||||||| Sbjct: 645 actgcgcctcccacgtcctc 664
>gb|AC158939.9| Mus musculus chromosome 5, clone RP23-204A8, complete sequence Length = 218847 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 ttctagataagacaaagcatcttg 128 |||||||||||||| ||||||||| Sbjct: 189630 ttctagataagacacagcatcttg 189653
>gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, complete sequence Length = 190776 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 155185 tgtgaaagatgcaggaaaaa 155204
>gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chromosome 7, complete sequence Length = 210978 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 116134 tgtgaaagatgcaggaaaaa 116115
>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence Length = 206675 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 7705 tgtgaaagatgcaggaaaaa 7724
>gb|AC123805.4| Mus musculus BAC clone RP24-150A12 from chromosome 7, complete sequence Length = 160666 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aggctgaatgtgaaagatgc 150 |||||||||||||||||||| Sbjct: 14561 aggctgaatgtgaaagatgc 14580
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 gggcaaggtgcttggcttaa 524 |||||||||||||||||||| Sbjct: 1823540 gggcaaggtgcttggcttaa 1823559
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 gggcaaggtgcttggcttaa 524 |||||||||||||||||||| Sbjct: 1703336 gggcaaggtgcttggcttaa 1703355
>emb|AL356962.8| Human DNA sequence from clone RP11-453C2 on chromosome 6 Contains the 5' end of the IMPG1 gene for interphotoreceptor matrix proteoglycan 1, complete sequence Length = 186301 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 491 ttgctagaatttatgggcaaggtgcttggctt 522 ||||||||||||| | ||| |||||||||||| Sbjct: 20468 ttgctagaatttaggtgcatggtgcttggctt 20437
>gb|AC099742.2| Papio anubis clone RP41-167P22, complete sequence Length = 171612 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 98740 tgtgaaagatgcaggaaaaa 98721
>gb|AC154328.2| Mus musculus BAC clone RP23-298N23 from chromosome 13, complete sequence Length = 182025 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaagaggaagactgacagag 98 |||||||||||||||||||| Sbjct: 75447 aaagaggaagactgacagag 75466
>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10 Length = 313050 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gaatgtgaaagatgcaggaa 155 |||||||||||||||||||| Sbjct: 248572 gaatgtgaaagatgcaggaa 248591
>emb|BX901917.9| Zebrafish DNA sequence from clone DKEY-32E10 in linkage group 5, complete sequence Length = 238589 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 ggaataataaatcaaagctt 574 |||||||||||||||||||| Sbjct: 180709 ggaataataaatcaaagctt 180690
>gb|AC109604.8| Mus musculus strain 129Sv/CJ7 clone rp22-298k22, complete sequence Length = 139770 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aaagaggaagactgacagag 98 |||||||||||||||||||| Sbjct: 114390 aaagaggaagactgacagag 114371
>gb|AC161278.2| Pan troglodytes BAC clone CH251-486B7 from chromosome 7, complete sequence Length = 211383 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 48747 tgtgaaagatgcaggaaaaa 48766
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tggaataataaatcaaagct 573 |||||||||||||||||||| Sbjct: 118130 tggaataataaatcaaagct 118111
>gb|AF129108.2|AF129108 Homo sapiens chromosome 21 clone cosmid clone D75C1 map 21q22.2, complete sequence Length = 40874 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cacaacgttcagcaataaca 421 |||||||||||||||||||| Sbjct: 21618 cacaacgttcagcaataaca 21637
>gb|AF051934.2|AF051934 Homo sapiens chromosome 21 clone PAC 220P20 map 21q22.2, complete sequence Length = 144474 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cacaacgttcagcaataaca 421 |||||||||||||||||||| Sbjct: 6918 cacaacgttcagcaataaca 6937
>gb|AC003099.1| Homo sapiens chromosome 4, BAC clone B284B3, complete sequence Length = 95129 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 556 gaataataaatcaaagcttctgattgtt 583 |||||||||||||| | ||||||||||| Sbjct: 69258 gaataataaatcaaggattctgattgtt 69231
>emb|BX897717.4| Mouse DNA sequence from clone RP24-273F10 on chromosome X, complete sequence Length = 74320 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tgctcctgtacccccttgca 347 |||||||||||||||||||| Sbjct: 14338 tgctcctgtacccccttgca 14319
>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence Length = 128950 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 124358 tgtgaaagatgcaggaaaaa 124377
>emb|BX465839.8| Mouse DNA sequence from clone RP24-70F15 on chromosome X, complete sequence Length = 75393 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tgctcctgtacccccttgca 347 |||||||||||||||||||| Sbjct: 59984 tgctcctgtacccccttgca 60003
>gb|AY956957.1| Staphylococcus sp. HPC 921 16S ribosomal RNA gene, partial sequence Length = 664 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 agatttggagcttgctcctt 269 |||||||||||||||||||| Sbjct: 41 agatttggagcttgctcctt 60
>gb|AY956944.1| Staphylococcus sp. HPC 908 16S ribosomal RNA gene, partial sequence Length = 685 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 agatttggagcttgctcctt 269 |||||||||||||||||||| Sbjct: 37 agatttggagcttgctcctt 56
>dbj|BS000196.1| Pan troglodytes chromosome 22 clone:RP43-025M10, map 22, complete sequences Length = 196989 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cacaacgttcagcaataaca 421 |||||||||||||||||||| Sbjct: 106501 cacaacgttcagcaataaca 106520
>emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22, segment 2/3 Length = 348050 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 cacaacgttcagcaataaca 421 |||||||||||||||||||| Sbjct: 223667 cacaacgttcagcaataaca 223648
>emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067 Length = 340000 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cacaacgttcagcaataaca 421 |||||||||||||||||||| Sbjct: 314410 cacaacgttcagcaataaca 314429
>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18, complete sequence Length = 176163 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gccaaagaggaagactgaca 95 |||||||||||||||||||| Sbjct: 91193 gccaaagaggaagactgaca 91212
>gb|AC153866.6| Mus musculus 10 BAC RP23-350O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184984 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaagaggaagactgacagag 98 |||||||||||||||||||| Sbjct: 78407 aaagaggaagactgacagag 78426
>gb|AC004701.1|AC004701 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence Length = 143839 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aaagatgcaggaaaaatctt 162 |||||||||||||||||||| Sbjct: 103885 aaagatgcaggaaaaatctt 103904
>gb|AC117614.12| Mus musculus chromosome 5, clone RP23-110C17, complete sequence Length = 222809 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccaaagaggaagactgacag 96 |||||||||||||||||||| Sbjct: 117675 ccaaagaggaagactgacag 117656
>emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-55G7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 160718 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tatatatatgttgttgatgg 288 |||||||||||||||||||| Sbjct: 150756 tatatatatgttgttgatgg 150775
>gb|AC002064.1|HSAC002064 Human BAC clone RG016J04 from 7q21, complete sequence Length = 156214 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tgtgaaagatgcaggaaaaa 158 |||||||||||||||||||| Sbjct: 40695 tgtgaaagatgcaggaaaaa 40676
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gggcaaggtgcttggcttaa 524 |||||||||||||||||||| Sbjct: 1655310 gggcaaggtgcttggcttaa 1655291
>dbj|AP001821.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2302A17, complete sequence Length = 108388 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 556 gaataataaatcaaagcttctgattgtt 583 |||||||||||||| | ||||||||||| Sbjct: 19139 gaataataaatcaaggattctgattgtt 19166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,090,357 Number of Sequences: 3902068 Number of extensions: 6090357 Number of successful extensions: 105557 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105296 Number of HSP's gapped (non-prelim): 247 length of query: 664 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 641 effective length of database: 17,143,297,704 effective search space: 10988853828264 effective search space used: 10988853828264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)