| Clone Name | bags30c14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450193.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1812 Score = 591 bits (298), Expect = e-165 Identities = 514/587 (87%), Gaps = 6/587 (1%) Strand = Plus / Plus Query: 2 aattcttgatgggaatcagactgatgctgattcacacactgcaggggaggaagttgcttc 61 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 414 aattcttgatgggaatcagactgatgctgattcaaacactgcaggggaggaggttgcttc 473 Query: 62 aaggctgttgaataggcaacaaagcattcaccctcctcctgcctttggttcatctacaaa 121 |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 474 aaggctgttgaacagacaacagagcattcaccctcctcctgcctttggttcatctacaaa 533 Query: 122 ccttgacgcccttgctcttgaagccagcaagtcgcaaggccaagatcaggatagcacatc 181 ||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| || Sbjct: 534 tcttgaggcccttgctcttgaggctagcaagtcccaaggacaagaccatgatagcacctc 593 Query: 182 ggataatgttcgatctctctacagacccatgcatgaaatcaccttctctaccattgacaa 241 |||||||| | || ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 594 agataatgt-caat-----tacagacccatgcatgaaatcaccttctccaccattgacaa 647 Query: 242 accaaagcttctcagcgagctgacatgtctgcttggtgaaattggtctcaacattcaaga 301 |||||||||||| |||||||| |||| |||||||| ||| ||||||| ||||||||||| Sbjct: 648 accaaagcttcttagcgagctcacatcgctgcttggcgaacttggtctaaacattcaaga 707 Query: 302 agcacatgcgttttcgacaaatgatggctactcactcgacgtatttgttgttgttggttg 361 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 708 agcacatgcgttttcaacaaatgatggctactcactcgatgtctttgttgttgttggttg 767 Query: 362 gcatgccgaggaaacagtggatttaatagaagaattnnnnnnngaaatcatcaagattga 421 ||||| |||||||| | ||||||||||||| | | ||||| ||||||||| Sbjct: 768 gcatgatgaggaaactgaggatttaatagaatcagtacggaaagaaattggcaagattga 827 Query: 422 ggagacacaagcatggtctacatctcattcatggtcttctccagttgaaaatatgcagat 481 ||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 828 tgagacgcagggatggtctacaactcattcatggtcttctccagttgaaaatatgcagat 887 Query: 482 cgtggagaactcaacagccgatcatgttgctatacctacagatggtgctagtgaatggga 541 | |||||| ||| |||| || ||||||| ||||||| |||||||| ||||||||||| Sbjct: 888 tggggagaattcagcagctgaccatgttgaaatacctagggatggtgccagtgaatggga 947 Query: 542 aattgatataaaactactcaatttcggcaataaagtagcatctggat 588 |||||| |||| |||||||| || || |||||||||||||| |||| Sbjct: 948 gattgatgtaaagctactcaagtttgggaataaagtagcatccggat 994
>dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full insert sequence Length = 2263 Score = 591 bits (298), Expect = e-165 Identities = 514/587 (87%), Gaps = 6/587 (1%) Strand = Plus / Plus Query: 2 aattcttgatgggaatcagactgatgctgattcacacactgcaggggaggaagttgcttc 61 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 447 aattcttgatgggaatcagactgatgctgattcaaacactgcaggggaggaggttgcttc 506 Query: 62 aaggctgttgaataggcaacaaagcattcaccctcctcctgcctttggttcatctacaaa 121 |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 507 aaggctgttgaacagacaacagagcattcaccctcctcctgcctttggttcatctacaaa 566 Query: 122 ccttgacgcccttgctcttgaagccagcaagtcgcaaggccaagatcaggatagcacatc 181 ||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| || Sbjct: 567 tcttgaggcccttgctcttgaggctagcaagtcccaaggacaagaccatgatagcacctc 626 Query: 182 ggataatgttcgatctctctacagacccatgcatgaaatcaccttctctaccattgacaa 241 |||||||| | || ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 627 agataatgt-caat-----tacagacccatgcatgaaatcaccttctccaccattgacaa 680 Query: 242 accaaagcttctcagcgagctgacatgtctgcttggtgaaattggtctcaacattcaaga 301 |||||||||||| |||||||| |||| |||||||| ||| ||||||| ||||||||||| Sbjct: 681 accaaagcttcttagcgagctcacatcgctgcttggcgaacttggtctaaacattcaaga 740 Query: 302 agcacatgcgttttcgacaaatgatggctactcactcgacgtatttgttgttgttggttg 361 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 741 agcacatgcgttttcaacaaatgatggctactcactcgatgtctttgttgttgttggttg 800 Query: 362 gcatgccgaggaaacagtggatttaatagaagaattnnnnnnngaaatcatcaagattga 421 ||||| |||||||| | ||||||||||||| | | ||||| ||||||||| Sbjct: 801 gcatgatgaggaaactgaggatttaatagaatcagtacggaaagaaattggcaagattga 860 Query: 422 ggagacacaagcatggtctacatctcattcatggtcttctccagttgaaaatatgcagat 481 ||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 861 tgagacgcagggatggtctacaactcattcatggtcttctccagttgaaaatatgcagat 920 Query: 482 cgtggagaactcaacagccgatcatgttgctatacctacagatggtgctagtgaatggga 541 | |||||| ||| |||| || ||||||| ||||||| |||||||| ||||||||||| Sbjct: 921 tggggagaattcagcagctgaccatgttgaaatacctagggatggtgccagtgaatggga 980 Query: 542 aattgatataaaactactcaatttcggcaataaagtagcatctggat 588 |||||| |||| |||||||| || || |||||||||||||| |||| Sbjct: 981 gattgatgtaaagctactcaagtttgggaataaagtagcatccggat 1027
>gb|AY108424.1| Zea mays PCO149843 mRNA sequence Length = 1330 Score = 266 bits (134), Expect = 7e-68 Identities = 280/331 (84%) Strand = Plus / Plus Query: 258 gagctgacatgtctgcttggtgaaattggtctcaacattcaagaagcacatgcgttttcg 317 |||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||| Sbjct: 41 gagctgacatctctgcttggtgagcttggtctaaacattcaagaagcacatgcattttca 100 Query: 318 acaaatgatggctactcactcgacgtatttgttgttgttggttggcatgccgaggaaaca 377 |||||||||||||||||||| || || || |||||||| |||||||||| ||||||||| Sbjct: 101 acaaatgatggctactcacttgatgtcttcgttgttgtcggttggcatgatgaggaaaca 160 Query: 378 gtggatttaatagaagaattnnnnnnngaaatcatcaagattgaggagacacaagcatgg 437 | ||||||| |||||| | | ||||| || |||||| ||||||||||||||| Sbjct: 161 gaggatttagtagaagcagtgcagaaggaaattggcaggattgaagagacacaagcatgg 220 Query: 438 tctacatctcattcatggtcttctccagttgaaaatatgcagatcgtggagaactcaaca 497 ||| ||||||||||||||||| ||||||||||||| |||||||| | ||||| ||| || Sbjct: 221 tcttcatctcattcatggtctactccagttgaaaaaatgcagattgctgagaattcagca 280 Query: 498 gccgatcatgttgctatacctacagatggtgctagtgaatgggaaattgatataaaacta 557 || || | ||||| ||||| |||||||||||||||||||||||||||||| ||| || Sbjct: 281 gctgaccgtgttgagataccaacagatggtgctagtgaatgggaaattgatgcaaagctt 340 Query: 558 ctcaatttcggcaataaagtagcatctggat 588 ||||| || || |||||||||||||| |||| Sbjct: 341 ctcaagtttgggaataaagtagcatcaggat 371
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 157 bits (79), Expect = 5e-35 Identities = 136/155 (87%) Strand = Plus / Plus Query: 434 atggtctacatctcattcatggtcttctccagttgaaaatatgcagatcgtggagaactc 493 |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct: 21190370 atggtctacaactcattcatggtcttctccagttgaaaatatgcagattggggagaattc 21190429 Query: 494 aacagccgatcatgttgctatacctacagatggtgctagtgaatgggaaattgatataaa 553 | |||| || ||||||| ||||||| |||||||| ||||||||||| |||||| |||| Sbjct: 21190430 agcagctgaccatgttgaaatacctagggatggtgccagtgaatgggagattgatgtaaa 21190489 Query: 554 actactcaatttcggcaataaagtagcatctggat 588 |||||||| || || |||||||||||||| |||| Sbjct: 21190490 gctactcaagtttgggaataaagtagcatccggat 21190524 Score = 145 bits (73), Expect = 2e-31 Identities = 91/97 (93%) Strand = Plus / Plus Query: 270 ctgcttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggc 329 |||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 21189357 ctgcttggcgaacttggtctaaacattcaagaagcacatgcgttttcaacaaatgatggc 21189416 Query: 330 tactcactcgacgtatttgttgttgttggttggcatg 366 ||||||||||| || |||||||||||||||||||||| Sbjct: 21189417 tactcactcgatgtctttgttgttgttggttggcatg 21189453 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 84 agcattcaccctcctcctgcctttggttcatctacaaaccttgacgcccttgctcttgaa 143 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 21188837 agcattcaccctcctcctgcctttggttcatctacaaatcttgaggcccttgctcttgag 21188896 Query: 144 gccagcaagtcgcaaggccaagatcaggatagcacatcggataatgt 190 || |||||||| ||||| ||||| || |||||||| || |||||||| Sbjct: 21188897 gctagcaagtcccaaggacaagaccatgatagcacctcagataatgt 21188943 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 2 aattcttgatgggaatcagactgatgctgattcacacactgcaggggaggaagttgcttc 61 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 21188603 aattcttgatgggaatcagactgatgctgattcaaacactgcaggggaggaggttgcttc 21188662 Query: 62 aaggctgttgaataggcaaca 82 |||||||||||| || ||||| Sbjct: 21188663 aaggctgttgaacagacaaca 21188683 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 201 tacagacccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagcgag 260 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 21189134 tacagacccatgcatgaaatcaccttctccaccattgacaaaccaaagcttcttagcgag 21189193 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cattcaccctcctcctgccttt 107 |||||||||||||||||||||| Sbjct: 21188786 cattcaccctcctcctgccttt 21188807
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 157 bits (79), Expect = 5e-35 Identities = 136/155 (87%) Strand = Plus / Plus Query: 434 atggtctacatctcattcatggtcttctccagttgaaaatatgcagatcgtggagaactc 493 |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct: 61127 atggtctacaactcattcatggtcttctccagttgaaaatatgcagattggggagaattc 61186 Query: 494 aacagccgatcatgttgctatacctacagatggtgctagtgaatgggaaattgatataaa 553 | |||| || ||||||| ||||||| |||||||| ||||||||||| |||||| |||| Sbjct: 61187 agcagctgaccatgttgaaatacctagggatggtgccagtgaatgggagattgatgtaaa 61246 Query: 554 actactcaatttcggcaataaagtagcatctggat 588 |||||||| || || |||||||||||||| |||| Sbjct: 61247 gctactcaagtttgggaataaagtagcatccggat 61281 Score = 145 bits (73), Expect = 2e-31 Identities = 91/97 (93%) Strand = Plus / Plus Query: 270 ctgcttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggc 329 |||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 60114 ctgcttggcgaacttggtctaaacattcaagaagcacatgcgttttcaacaaatgatggc 60173 Query: 330 tactcactcgacgtatttgttgttgttggttggcatg 366 ||||||||||| || |||||||||||||||||||||| Sbjct: 60174 tactcactcgatgtctttgttgttgttggttggcatg 60210 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 84 agcattcaccctcctcctgcctttggttcatctacaaaccttgacgcccttgctcttgaa 143 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 59594 agcattcaccctcctcctgcctttggttcatctacaaatcttgaggcccttgctcttgag 59653 Query: 144 gccagcaagtcgcaaggccaagatcaggatagcacatcggataatgt 190 || |||||||| ||||| ||||| || |||||||| || |||||||| Sbjct: 59654 gctagcaagtcccaaggacaagaccatgatagcacctcagataatgt 59700 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 2 aattcttgatgggaatcagactgatgctgattcacacactgcaggggaggaagttgcttc 61 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 59360 aattcttgatgggaatcagactgatgctgattcaaacactgcaggggaggaggttgcttc 59419 Query: 62 aaggctgttgaataggcaaca 82 |||||||||||| || ||||| Sbjct: 59420 aaggctgttgaacagacaaca 59440 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 201 tacagacccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagcgag 260 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 59891 tacagacccatgcatgaaatcaccttctccaccattgacaaaccaaagcttcttagcgag 59950 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cattcaccctcctcctgccttt 107 |||||||||||||||||||||| Sbjct: 59543 cattcaccctcctcctgccttt 59564
>ref|NM_120008.1| Arabidopsis thaliana ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT4G38470 mRNA, complete cds Length = 1858 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 291 aacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacgtatttgtt 350 ||||||||||| |||||||| || || |||| ||||||||||||||| || || |||||| Sbjct: 607 aacattcaagaggcacatgctttctctacaactgatggctactcactagatgtttttgtt 666 Query: 351 gttgttggttggc 363 |||| ||| |||| Sbjct: 667 gttgatggctggc 679 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 82 aaagcattcaccctcctcctgcctttggttcatc 115 |||||||||| || || ||||||||||||||||| Sbjct: 398 aaagcattcatccgccgcctgcctttggttcatc 431
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 291 aacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacgtatttgtt 350 ||||||||||| |||||||| || || |||| ||||||||||||||| || || |||||| Sbjct: 109926 aacattcaagaggcacatgctttctctacaactgatggctactcactagatgtttttgtt 109985 Query: 351 gttgttggttggc 363 |||| ||| |||| Sbjct: 109986 gttgatggctggc 109998 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 84 agcattcaccctcctcctgcctttggttcatc 115 |||||||| || || ||||||||||||||||| Sbjct: 109168 agcattcatccgccgcctgcctttggttcatc 109199
>emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project) Length = 93760 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 291 aacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacgtatttgtt 350 ||||||||||| |||||||| || || |||| ||||||||||||||| || || |||||| Sbjct: 68968 aacattcaagaggcacatgctttctctacaactgatggctactcactagatgtttttgtt 69027 Query: 351 gttgttggttggc 363 |||| ||| |||| Sbjct: 69028 gttgatggctggc 69040 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 84 agcattcaccctcctcctgcctttggttcatc 115 |||||||| || || ||||||||||||||||| Sbjct: 68210 agcattcatccgccgcctgcctttggttcatc 68241
>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence Length = 107740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 291 aacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacgtatttgtt 350 ||||||||||| |||||||| || || |||| ||||||||||||||| || || |||||| Sbjct: 55601 aacattcaagaggcacatgctttctctacaactgatggctactcactagatgtttttgtt 55542 Query: 351 gttgttggttggc 363 |||| ||| |||| Sbjct: 55541 gttgatggctggc 55529 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 84 agcattcaccctcctcctgcctttggttcatc 115 |||||||| || || ||||||||||||||||| Sbjct: 56359 agcattcatccgccgcctgcctttggttcatc 56328
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project) Length = 91938 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 291 aacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacgtatttgtt 350 ||||||||||| |||||||| || || |||| ||||||||||||||| || || |||||| Sbjct: 10867 aacattcaagaggcacatgctttctctacaactgatggctactcactagatgtttttgtt 10926 Query: 351 gttgttggttggc 363 |||| ||| |||| Sbjct: 10927 gttgatggctggc 10939 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 84 agcattcaccctcctcctgcctttggttcatc 115 |||||||| || || ||||||||||||||||| Sbjct: 10109 agcattcatccgccgcctgcctttggttcatc 10140
>ref|XM_478075.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1976 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 273 cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctac 332 ||||| ||| |||| || ||||| |||||||||||||| |||||||| | ||||||||| Sbjct: 624 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggctat 683 Query: 333 tcactcgacgtatttgttgt 352 || || ||| | |||||||| Sbjct: 684 tctcttgacatctttgttgt 703
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctac 332 ||||| ||| |||| || ||||| |||||||||||||| |||||||| | ||||||||| Sbjct: 17150763 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggctat 17150704 Query: 333 tcactcgacgtatttgttgt 352 || || ||| | |||||||| Sbjct: 17150703 tctcttgacatctttgttgt 17150684
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0571D04 Length = 149302 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctac 332 ||||| ||| |||| || ||||| |||||||||||||| |||||||| | ||||||||| Sbjct: 103889 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggctat 103830 Query: 333 tcactcgacgtatttgttgt 352 || || ||| | |||||||| Sbjct: 103829 tctcttgacatctttgttgt 103810
>dbj|AK066198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N03, full insert sequence Length = 1975 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 273 cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctac 332 ||||| ||| |||| || ||||| |||||||||||||| |||||||| | ||||||||| Sbjct: 623 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggctat 682 Query: 333 tcactcgacgtatttgttgt 352 || || ||| | |||||||| Sbjct: 683 tctcttgacatctttgttgt 702
>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence Length = 114664 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 207 cccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagc 257 |||||||||||||||||| |||| || |||||| ||||||||||||||| Sbjct: 82180 cccatgcatgaaatcaccgtctcaacagatgacaagccaaagcttctcagc 82230
>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence Length = 125855 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 207 cccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagc 257 |||||||||||||||||| |||| || |||||| ||||||||||||||| Sbjct: 59899 cccatgcatgaaatcaccgtctcaacagatgacaagccaaagcttctcagc 59849
>ref|XM_463904.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2251 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 283 ttggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacg 342 ||||||| |||| |||||||| ||||| ||||| |||| |||||| |||||| | || | Sbjct: 805 ttggtcttgacatccaagaagcgcatgcattttcaacaagtgatggttactcattggatg 864 Query: 343 tatttgttgt 352 |||||||||| Sbjct: 865 tatttgttgt 874
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 283 ttggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacg 342 ||||||| |||| |||||||| ||||| ||||| |||| |||||| |||||| | || | Sbjct: 1054242 ttggtcttgacatccaagaagcgcatgcattttcaacaagtgatggttactcattggatg 1054183 Query: 343 tatttgttgt 352 |||||||||| Sbjct: 1054182 tatttgttgt 1054173
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 283 ttggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacg 342 ||||||| |||| |||||||| ||||| ||||| |||| |||||| |||||| | || | Sbjct: 6766 ttggtcttgacatccaagaagcgcatgcattttcaacaagtgatggttactcattggatg 6707 Query: 343 tatttgttgt 352 |||||||||| Sbjct: 6706 tatttgttgt 6697
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 283 ttggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacg 342 ||||||| |||| |||||||| ||||| ||||| |||| |||||| |||||| | || | Sbjct: 42950 ttggtcttgacatccaagaagcgcatgcattttcaacaagtgatggttactcattggatg 42891 Query: 343 tatttgttgt 352 |||||||||| Sbjct: 42890 tatttgttgt 42881
>dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N12, full insert sequence Length = 2251 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 283 ttggtctcaacattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacg 342 ||||||| |||| |||||||| ||||| ||||| |||| |||||| |||||| | || | Sbjct: 805 ttggtcttgacatccaagaagcgcatgcattttcaacaagtgatggttactcattggatg 864 Query: 343 tatttgttgt 352 |||||||||| Sbjct: 865 tatttgttgt 874
>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE Length = 115239 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 273 cttggtgaaattggtctcaacattcaagaagcacatgcgttttc 316 |||||||| ||||| || || ||||||||||| ||||||||||| Sbjct: 60409 cttggtgagattggactaaatattcaagaagctcatgcgttttc 60452
>dbj|AP004948.1| Lotus japonicus genomic DNA, chromosome , clone:LjT35I07, TM0121b, complete sequence Length = 56086 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 292 acattcaagaagcacatgcgttttcgacaaatgatggctactcactcgacgtatttgttg 351 ||||||||||||||||||| ||||| ||| |||||||| ||| | || || |||| || Sbjct: 14937 acattcaagaagcacatgctttttccacattggatggctattcattggatgtttttgctg 14996 Query: 352 ttgttggttggc 363 ||| |||||||| Sbjct: 14997 ttggtggttggc 15008
>emb|AL928890.6| Mouse DNA sequence from clone RP24-314D20 on chromosome 2, complete sequence Length = 132135 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 541 aaattgatataaaactactcaat 563 ||||||||||||||||||||||| Sbjct: 1594 aaattgatataaaactactcaat 1616
>emb|AL953900.7| Mouse DNA sequence from clone RP24-166A20 on chromosome 2, complete sequence Length = 131582 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 541 aaattgatataaaactactcaat 563 ||||||||||||||||||||||| Sbjct: 131176 aaattgatataaaactactcaat 131198
>gb|AC102135.12| Mus musculus chromosome 18, clone RP23-253J5, complete sequence Length = 204286 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 503 tcatgttgctatacctacagatggt 527 ||||||||||||| ||||||||||| Sbjct: 90567 tcatgttgctatagctacagatggt 90543
>emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in linkage group 14, complete sequence Length = 197683 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 aggcaacaaagcattcaccct 95 ||||||||||||||||||||| Sbjct: 122752 aggcaacaaagcattcaccct 122732
>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence Length = 253504 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 caaagcattcaccctcctcct 101 ||||||||||||||||||||| Sbjct: 184700 caaagcattcaccctcctcct 184720
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 agtggatttaatagaagaatt 397 ||||||||||||||||||||| Sbjct: 1121051 agtggatttaatagaagaatt 1121071
>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland Research Institute) complete sequence Length = 232401 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gtatttgttgttgttggttg 361 |||||||||||||||||||| Sbjct: 230839 gtatttgttgttgttggttg 230820
>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence Length = 234158 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 caataaagtagcatctggat 588 |||||||||||||||||||| Sbjct: 123693 caataaagtagcatctggat 123712
>emb|AL590403.13| Human DNA sequence from clone RP13-459B11 on chromosome 6 Contains the GRM4 gene for glutamate receptor (metabotropic 4) and a CpG island, complete sequence Length = 118771 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttgctcttgaagccagcaag 152 |||||||||||||||||||| Sbjct: 649 ttgctcttgaagccagcaag 630
>emb|AL589941.6| Human DNA sequence from clone RP13-377P8 on chromosome 6, complete sequence Length = 80600 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttgctcttgaagccagcaag 152 |||||||||||||||||||| Sbjct: 79249 ttgctcttgaagccagcaag 79230
>emb|AL161945.31| Human DNA sequence from clone RP4-606D23 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 70299 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 acattcaagaagcacatgcgtttt 315 |||||||||||||||||| ||||| Sbjct: 32889 acattcaagaagcacatgggtttt 32866
>emb|BX571855.11| Zebrafish DNA sequence from clone DKEY-260N18 in linkage group 9, complete sequence Length = 114407 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 caataaagtagcatctggat 588 |||||||||||||||||||| Sbjct: 80408 caataaagtagcatctggat 80389
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gaaatcatcaagattgagga 424 |||||||||||||||||||| Sbjct: 1228413 gaaatcatcaagattgagga 1228394
>emb|BX511164.11| Zebrafish DNA sequence from clone DKEY-63J1 in linkage group 19, complete sequence Length = 214001 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 tccagttgaaaatatgcaga 480 |||||||||||||||||||| Sbjct: 5948 tccagttgaaaatatgcaga 5929
>gb|AC101790.5| Mus musculus chromosome 8, clone RP24-163M14, complete sequence Length = 202651 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 caataaagtagcatctggat 588 |||||||||||||||||||| Sbjct: 19611 caataaagtagcatctggat 19592
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 cagacccatgcatgaaatcacctt 226 ||||||||||||||| |||||||| Sbjct: 30303151 cagacccatgcatgagatcacctt 30303174
>gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosome 13, complete sequence Length = 174991 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tctcaacattcaagaagcac 306 |||||||||||||||||||| Sbjct: 101527 tctcaacattcaagaagcac 101508
>gb|AC097713.3| Homo sapiens BAC clone RP11-251I17 from 2, complete sequence Length = 173790 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tatttgttgttgttggttgg 362 |||||||||||||||||||| Sbjct: 129174 tatttgttgttgttggttgg 129193
>gb|AC015971.4| Homo sapiens BAC clone RP11-269K22 from 2, complete sequence Length = 163852 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 aatgggaaattgatataaaa 554 |||||||||||||||||||| Sbjct: 22105 aatgggaaattgatataaaa 22086
>dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0535F09 Length = 175050 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 cagacccatgcatgaaatcacctt 226 ||||||||||||||| |||||||| Sbjct: 169486 cagacccatgcatgagatcacctt 169509
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 cagacccatgcatgaaatcacctt 226 ||||||||||||||| |||||||| Sbjct: 49746 cagacccatgcatgagatcacctt 49769
>emb|BX510355.6| Mouse DNA sequence from clone RP23-20E14 on chromosome X, complete sequence Length = 57320 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 cttctccagttgaaaatatg 476 |||||||||||||||||||| Sbjct: 40830 cttctccagttgaaaatatg 40811
>dbj|AK073747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068K18, full insert sequence Length = 1961 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 cagacccatgcatgaaatcacctt 226 ||||||||||||||| |||||||| Sbjct: 550 cagacccatgcatgagatcacctt 573
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 aaagcttctcagcgagctga 264 |||||||||||||||||||| Sbjct: 2732281 aaagcttctcagcgagctga 2732300
>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence Length = 185363 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 agcattcaccctcctcctgc 103 |||||||||||||||||||| Sbjct: 43097 agcattcaccctcctcctgc 43116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,218,311 Number of Sequences: 3902068 Number of extensions: 6218311 Number of successful extensions: 121886 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121668 Number of HSP's gapped (non-prelim): 218 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)