>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score =  112 bits (279), Expect = 1e-24
 Identities = 60/193 (31%), Positives = 103/193 (53%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G+ P VV+Y ++I+ + K+G           M  +GI PDV+TY ++I+ L +A  +D A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
           +   + M++NG  P+  TYN+++  +   G+  E +     +RS G  PDVVT++ L+  
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310

Query: 365 FGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPD 544
             +NG   E   +F  M K G  PE  TY +L+  Y+  G   +   +   M+  GI+PD
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370

Query: 545 ISTYNAVLSALAR 583
              ++ ++ A A+
Sbjct: 371 HYVFSILICAYAK 383



 Score =  109 bits (273), Expect = 5e-24
 Identities = 58/193 (30%), Positives = 100/193 (51%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G  P VVTYNS+I++  K             M   G+ PD +TY +++ G   +G+   A
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
           IG   +M  +G +P++ TY+ L+      G+  E   +FD +   G  P++ T+ TLL  
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 365 FGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPD 544
           +   G   E+ G+   M ++G  P+   +  LI +Y++ G  DQ+M ++ +M + G+ P+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPN 405

Query: 545 ISTYNAVLSALAR 583
             TY AV+  L +
Sbjct: 406 AVTYGAVIGILCK 418



 Score =  102 bits (255), Expect = 6e-22
 Identities = 53/191 (27%), Positives = 94/191 (49%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G  P  +TYNS++  Y   G           M   G++PDV+TY+ L+  L + G+   A
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
              +D M + G KP + TY  L++ +  +G   EM  + D +   G  PD   ++ L+  
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380

Query: 365 FGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPD 544
           + + G   +   VF +M++ G  P   TY ++I    + G  + +M  +++MI+ G+ P 
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440

Query: 545 ISTYNAVLSAL 577
              YN+++  L
Sbjct: 441 NIVYNSLIHGL 451



 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 52/190 (27%), Positives = 93/190 (48%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G  P VVTY+ L+    K+G           M  +G++P++ TY TL+ G    G +   
Sbjct: 296 GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 355

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
            G  D M+RNG  P+   ++ LI  +  +GK  + M VF  +R  G  P+ VT+  ++ +
Sbjct: 356 HGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGI 415

Query: 365 FGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPD 544
             ++G   +    F++M   G  P    Y SLI     C  ++++ E+   M++ GI  +
Sbjct: 416 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 545 ISTYNAVLSA 574
              +N+++ +
Sbjct: 476 TIFFNSIIDS 485



 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 58/191 (30%), Positives = 89/191 (46%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G  P+ VTY ++I    K G           M  +G+ P  I Y +LI GL    K + A
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
                EML  G   N   +N++I  H   G+  E   +F+ +   G  P+V+T+NTL+  
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 365 FGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPD 544
           +   G   E   +   M   G  P   TY +LI+ Y +    + ++ ++K M  +G+ PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580

Query: 545 ISTYNAVLSAL 577
           I TYN +L  L
Sbjct: 581 IITYNIILQGL 591



 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 51/189 (26%), Positives = 98/189 (51%)
 Frame = +2

Query: 17   SVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTY 196
            + + +NS+I S+ K+G           M   G++P+VITY TLI+G   AGK+D A+   
Sbjct: 475  NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 197  DEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQN 376
              M+  G KPN  TY+ LI  +    +  + + +F ++ S+G  PD++T+N +L    Q 
Sbjct: 535  SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 377  GLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTY 556
               +    ++  + +SG   E  TY  ++    +  L D ++++++ +    +  +  T+
Sbjct: 595  RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654

Query: 557  NAVLSALAR 583
            N ++ AL +
Sbjct: 655  NIMIDALLK 663



 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 55/193 (28%), Positives = 94/193 (48%)
 Frame = +2

Query: 5    GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
            G  P  + YNSLI                  M  +GI  + I + ++I    + G++  +
Sbjct: 436  GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 495

Query: 185  IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
               ++ M+R G KPN+ TYN LI  + + GK  E M +   + S G  P+ VT++TL+  
Sbjct: 496  EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555

Query: 365  FGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPD 544
            + +     +   +FKEM+ SG  P+  TY  ++    +      + E+Y R+ E+G   +
Sbjct: 556  YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIE 615

Query: 545  ISTYNAVLSALAR 583
            +STYN +L  L +
Sbjct: 616  LSTYNIILHGLCK 628



 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 4/189 (2%)
 Frame = +2

Query: 14  PSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAAIG- 190
           P + TY  LI    + G           +  KG + D I +T L+ GL    +   A+  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 191 TYDEMLRNGCKPNLCTYNALIKLHGVRGKFPE---MMAVFDDLRSAGFVPDVVTWNTLLA 361
               M   GC PN+ +YN L+K      +  E   ++ +  D R  G  PDVV++ T++ 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 362 VFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYP 541
            F + G   +    + EM   G +P+  TY S+I++  +    D++ME+   M++ G+ P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 542 DISTYNAVL 568
           D  TYN++L
Sbjct: 265 DCMTYNSIL 273



 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
 Frame = +2

Query: 113 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIK-LHGVRGKFPEM 289
           + PD+ TY  LI    RAG++D        +++ G + +   +  L+K L   +     M
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 290 MAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEM---KKSGYVPERDTYVSL 460
             V   +   G +P+V ++N LL          E   +   M   +  G  P+  +Y ++
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 461 ISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
           I+ + + G  D++   Y  M++ GI PD+ TYN++++AL +
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 31/141 (21%), Positives = 56/141 (39%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G  P ++TYN ++    +             +   G Q ++ TY  ++ GL +    D A
Sbjct: 576 GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
           +  +  +     K    T+N +I      G+  E   +F    S G VP+  T+  +   
Sbjct: 636 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 695

Query: 365 FGQNGLDSEVSGVFKEMKKSG 427
               GL  E+  +F  M+ +G
Sbjct: 696 IIGQGLLEELDQLFLSMEDNG 716



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 3/178 (1%)
 Frame = +2

Query: 5    GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
            GT+  + TYN ++    K+            + +  ++ +  T+  +I  L + G+ D A
Sbjct: 611  GTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670

Query: 185  IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAV 364
               +     NG  PN  TY  + +    +G   E+  +F  +   G   D    N ++  
Sbjct: 671  KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRE 730

Query: 365  FGQNGLDSEVSGVFKEMKKSGYVPERDT---YVSLISSYSRCGLFDQSMEIYKRMIEA 529
              Q G  +        + +  +  E  T   ++ L+S       +    E YK  IE+
Sbjct: 731  LLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFLPEKYKSFIES 788

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 70/228 (30%), Positives = 98/228 (42%), Gaps = 35/228 (15%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G  P VVTYN+LIS Y +             M   GI+PDV TY +LI+G  R   +D  
Sbjct: 43  GVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHV 102

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAV-FDDLRSAGFVPDVVTWNTLLA 361
           +  +DEML  G  P+L +YN L+  +   GK  E   V + DL+ AG  P   T+N LL 
Sbjct: 103 LYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLD 162

Query: 362 VFGQNGLDSEVSGVFKEM----------------------------------KKSGYVPE 439
              + G       +FKEM                                  KKSGY P 
Sbjct: 163 ALCKCGYIDNALELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPN 222

Query: 440 RDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
             TY +++  Y +     + ++++  M   G   D   Y AV+SAL +
Sbjct: 223 AVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIK 270



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
 Frame = +2

Query: 146 ISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGF 325
           +  L +  K++ A     + +R G  P++ TYN LI  +       E  AV   +R AG 
Sbjct: 20  VDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGI 79

Query: 326 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSME 505
            PDV T+N+L+A   +  +   V  +F EM + G  P+  +Y +L+  Y + G  +++  
Sbjct: 80  RPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFR 139

Query: 506 I-YKRMIEAGIYPDISTYNAVLSALAR 583
           + YK +  AG+ P   TYN +L AL +
Sbjct: 140 VLYKDLQLAGLNPGPDTYNVLLDALCK 166



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 45/191 (23%), Positives = 88/191 (46%)
 Frame = +2

Query: 11  RPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAAIG 190
           +P ++TYN LI+   K             ++  G  P+ +TYTT++    +  +I   + 
Sbjct: 185 KPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQ 244

Query: 191 TYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFG 370
            + EM R G   +   Y A++      G+  E      +L   G   D+V++NTLL ++ 
Sbjct: 245 LFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYF 304

Query: 371 QNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIS 550
           ++G    V  +  E+++ G   +  T+  +++   R G   ++ E +  M E GI  ++ 
Sbjct: 305 KDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLV 364

Query: 551 TYNAVLSALAR 583
           T N ++  L +
Sbjct: 365 TCNCLVDGLCK 375



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 33/118 (27%), Positives = 55/118 (46%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G R  +V+YN+L++ Y KDG           +E +G++ D  T+T +++GL R G+   A
Sbjct: 288 GRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRA 347

Query: 185 IGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLL 358
              +  M   G   NL T N L+      G     M  F+ +     V D  T+ +++
Sbjct: 348 EEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESME----VKDEYTYTSVV 401

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
 Frame = +2

Query: 98   MEVKGIQPDVITYTTLISGLDRAGKID---AAIGTYDEMLRNGCKPNLCTYNALIKLHGV 268
            M++ G  P   T+  LI+   R G  D    A+  ++E  R+  KP++  YNA++   G 
Sbjct: 879  MKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGR 938

Query: 269  RGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMK-KSGYVPERD 445
              +  E   +F +++ +G +P  VT+ T++    + G +S    +F EM+ +  Y P   
Sbjct: 939  ARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVA 998

Query: 446  TYVSLI-----SSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 574
             Y ++I     + ++R    ++++  Y R+    I P   TY  ++ A
Sbjct: 999  PYNTMIQFEVQTMFNR----EKALFYYNRLCATDIEPSSHTYKLLMDA 1042



 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
 Frame = +2

Query: 107  KGIQPDVITYTTLISGLDRAGKIDAAIGTYDE---MLRNGCKPNLCTYN--------ALI 253
            K + P+V  Y TLIS L +  + DA    ++    + R     +L   N        A+I
Sbjct: 803  KFLHPEV--YPTLISVLSKNKRFDAVQRVFEHSKHLYRKISTKSLEKANWFMALILDAMI 860

Query: 254  KLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVS---GVFKEMKKS 424
                   +F       D+++  G++P   T+  L+    + G   + +    +F+E K+ 
Sbjct: 861  LSSSFARQFKSSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRH 920

Query: 425  GYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
               P    Y +++S   R     +  ++++ M E+G+ P   TY  V++A  R
Sbjct: 921  NVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACR 973

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 1/164 (0%)
 Frame = +2

Query: 29  YNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEML 208
           YN+L+  Y+++            ME   IQP+ +TY  LI+     G I+ A      M 
Sbjct: 44  YNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMK 103

Query: 209 RNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDS 388
                     ++AL+  H   G       +   +R AG  P   T+  LL  + + G   
Sbjct: 104 TKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDID 163

Query: 389 EVSGVFKEMKK-SGYVPERDTYVSLISSYSRCGLFDQSMEIYKR 517
            V    ++++K   ++ +RD  + +I S+S+ G    S + +K+
Sbjct: 164 HVKQTLEKVEKFELHLMDRD-LLQIIFSFSKAGYLSMSQKFWKK 206



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 31/97 (31%), Positives = 46/97 (47%)
 Frame = +2

Query: 296 VFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 475
           ++D L+  G V DV  +N LL V+ QN      +    +M+++   P R TY  LI+SY 
Sbjct: 28  IWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYC 87

Query: 476 RCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARG 586
             G  + + +I   M       D+    AV SAL  G
Sbjct: 88  NVGDIEGASKILGFMKT----KDLPVTEAVFSALVTG 120



 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
 Frame = +2

Query: 140 TLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVF-DDLRS 316
           +L+  L    + + A   +D + + G   ++  YNAL+K++ ++ ++      F   +  
Sbjct: 11  SLLPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVY-LQNEYKFSPTDFLAKMEE 69

Query: 317 AGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQ 496
           A   P+ VT+  L+A +   G     S +   MK          + +L++ ++R G  + 
Sbjct: 70  ANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMEN 129

Query: 497 SMEIYKRMIEAGIYPDISTYNAVLSALA 580
           +  I   M +AGI P   TY A+L+A A
Sbjct: 130 AENILTVMRDAGIEPGPDTYLALLNAYA 157



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/88 (28%), Positives = 40/88 (45%)
 Frame = +2

Query: 11  RPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAAIG 190
           +P+ VTY  LI+SY   G           M+ K +      ++ L++G  RAG ++ A  
Sbjct: 73  QPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAEN 132

Query: 191 TYDEMLRNGCKPNLCTYNALIKLHGVRG 274
               M   G +P   TY AL+  +  +G
Sbjct: 133 ILTVMRDAGIEPGPDTYLALLNAYAEKG 160

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
 Frame = +2

Query: 113 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVR----GKF 280
           +QP    YT LI G  R G +  A   +++M +   +P+  TY AL  +           
Sbjct: 167 LQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSAL 226

Query: 281 PEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSL 460
              + +   L++  F  ++ T++ LL V  +         VFKE+ + G+    +T+  L
Sbjct: 227 QSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFL 286

Query: 461 ISS--YSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 574
           +      +   F Q+M+++++M+  GI P    YN +L A
Sbjct: 287 LVGCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEA 326



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
 Frame = +2

Query: 11  RPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRA----GKID 178
           +P    Y  LI    + G           M+ + ++P   TYT L +    +      + 
Sbjct: 168 QPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227

Query: 179 AAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLL 358
           +A+    ++     + NL TY+AL+K+          + VF ++   G      T+  LL
Sbjct: 228 SALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLL 287

Query: 359 AVFGQNGLDS--EVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMI 523
               Q+      +   V+++M   G  P R  Y  L+ +   CGL D   E+  R++
Sbjct: 288 VGCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCGLGDP--EVASRLL 342



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
 Frame = +2

Query: 5   GTRPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRAGKIDAA 184
           G +P + T  +L++  V+ G           ++   ++ DV  + TLI    + G ++ A
Sbjct: 480 GLQPDIKTL-TLLAEVVEPGSAAESSLLSV-LDRHRVEADVTFFNTLIRKKSKLGDLEGA 537

Query: 185 IGTYDEMLRNGCKPNLCTY-NALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLA 361
                 + + G  PNL T+ N  I  H  R    + M +  D++ +   P++  ++TL+ 
Sbjct: 538 KALLPILAKKGIVPNLRTFCNLAIGCHRPR----DGMQLLADMKKSQVSPNIHIYSTLIN 593

Query: 362 VFGQNGLDSEVSGVFKEMKKSGYVPERDTYV 454
              +    + +  + K+M+++  VP  +  V
Sbjct: 594 AALKKLDYTYLISILKDMRQNS-VPVNEVVV 623



 Score = 29.3 bits (64), Expect = 8.8
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
 Frame = +2

Query: 272 GKFPEMMAVFDD--LRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERD 445
           GK  E + +F+   L+     P    +  L+   G+ G   +   +F +MKK    P   
Sbjct: 148 GKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDA 207

Query: 446 TYVSLIS----SYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
           TY +L +    S  +      ++++ +++       ++ TY+A+L   A+
Sbjct: 208 TYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAK 257

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
 Frame = +2

Query: 113 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVR----GKF 280
           +QP    YT LI G  R G +  A   Y++M +   +P+  TY AL  +           
Sbjct: 167 LQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSAL 226

Query: 281 PEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSL 460
              + +   L++  F  ++ T++ LL +  +         VFKE+   G+V   +T+  L
Sbjct: 227 QSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFL 286

Query: 461 ISS--YSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 574
           +      +   F  ++++++ M+  G+ P   +YN +L A
Sbjct: 287 LMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVA 326



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 10/171 (5%)
 Frame = +2

Query: 11  RPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRA----GKID 178
           +P    Y +LI    + G           M+ + ++P   TYT L +    +      + 
Sbjct: 168 QPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227

Query: 179 AAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLL 358
           +A+    ++     + NL TY+AL+K+          + VF ++   G V    T++ LL
Sbjct: 228 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 287

Query: 359 AVFGQNGLDSEVSG------VFKEMKKSGYVPERDTYVSLISSYSRCGLFD 493
                  +  + +G      V++ M   G  P RD+Y  L+ +   CGL D
Sbjct: 288 ----MGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGD 334

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
 Frame = +2

Query: 113 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVR----GKF 280
           +QP    YT LI G  R G +  A   Y++M +   +P+  TY AL  +           
Sbjct: 169 LQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSAL 228

Query: 281 PEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSL 460
              + +   L++  F  ++ T++ LL +  +         VFKE+   G+V   +T+  L
Sbjct: 229 QSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFL 288

Query: 461 ISS--YSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 574
           +      +   F  ++++++ M+  G+ P   +YN +L A
Sbjct: 289 LMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVA 328



 Score = 39.7 bits (91), Expect = 0.007
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
 Frame = +2

Query: 11  RPSVVTYNSLISSYVKDGXXXXXXXXXXXMEVKGIQPDVITYTTLISGLDRA----GKID 178
           +P    Y  LI    + G           M+ + ++P   TYT L +    +      + 
Sbjct: 170 QPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 229

Query: 179 AAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLL 358
           +A+    ++     + NL TY+AL+K+          + VF ++   G V    T++ LL
Sbjct: 230 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 289

Query: 359 AVFGQNGLDSEVSG------VFKEMKKSGYVPERDTYVSLISSYSRCGLFD 493
                  +  + +G      V++ M   G  P RD+Y  L+ +   CGL D
Sbjct: 290 ----MGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGD 336

>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +2

Query: 110 GIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCK--PNLCTYNALIKLHGVRGKFP 283
           GI P+    TT+I    R      A  T+D M     K  P++CTYN ++++      FP
Sbjct: 315 GITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFP 374

Query: 284 EMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVS 397
           + + +F +++     P   T+  +  V   +  ++ VS
Sbjct: 375 KALDLFQEIQDHNIKPTTNTYIMMARVLASSSSNAVVS 412



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 215 GCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLR--SAGFVPDVVTWNTLLAVFGQNGLDS 388
           G  PN      +I+ +  +    +    FD ++  S    PD+ T+NT+L +  +     
Sbjct: 315 GITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFP 374

Query: 389 EVSGVFKEMKKSGYVPERDTYVSL 460
           +   +F+E++     P  +TY+ +
Sbjct: 375 KALDLFQEIQDHNIKPTTNTYIMM 398

>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 825

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
 Frame = +2

Query: 131 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDL 310
           T ++L S +D     +  +  + E +R G    +C+YN L   H  +  +     + ++L
Sbjct: 231 TSSSLSSEIDDRAMHEIYLWPFAEAVRGGVSSIMCSYNKLNGSHACQNSYLLNYLLKEEL 290

Query: 311 RSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMK-KSGYVPERDTYVSLISSYSRCGL 487
              GFV  +  W  L      +G+D+  +G+  +M  ++ Y     T   L  +  +  L
Sbjct: 291 GFQGFV--MTDWGAL-----YSGIDAANAGLDMDMPCEAQYFGGNLTTAVLNGTLPQDRL 343

Query: 488 FDQSMEIYKRMIEAGIY-PDISTYNA 562
            D +  I   +I +G++ PD   YNA
Sbjct: 344 DDMATRILSALIYSGVHNPDGPNYNA 369

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = +2

Query: 194 YDEMLRNGCKPNLCTYNALI-----KLH--GVRGKFPEMMAVFDDLRSAGFVPDVVTWNT 352
           + +M   GCKPN  TYN L+     K+H   +R    E++    +++  G   D VTWNT
Sbjct: 241 FAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELLFYLRNMQKNGIFCDTVTWNT 300

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +2

Query: 212 NGCKPNLCT---YNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGL 382
           NG +  + T   YN ++     +G F E++ VF  L+ AG  PD+ ++   L   G+   
Sbjct: 224 NGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQ 283

Query: 383 D-SEVSGVFKEMKKSGYVPE 439
           D   +    K+M + G+ P+
Sbjct: 284 DVRTIQRCLKQMMEEGFQPQ 303



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +2

Query: 449 YVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
           Y +++  ++R G F + + ++  + +AG+ PD+ +Y A L  + R
Sbjct: 236 YNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGR 280

>EI2BB_RABIT (Q28690) Translation initiation factor eIF-2B beta subunit (eIF-2B|
           GDP-GTP exchange factor)
          Length = 351

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 570 DKTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETY 448
           DK   +  +  Y+P  +I L+IS    N P  +Y LMSE Y
Sbjct: 304 DKVGCHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344

>EI2BB_MOUSE (Q99LD9) Translation initiation factor eIF-2B beta subunit (eIF-2B|
           GDP-GTP exchange factor)
          Length = 351

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 570 DKTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETY 448
           +K +++  +  Y+P  +I L+IS    N P  +Y LMSE Y
Sbjct: 304 EKVSVHCPVFDYVPPDLITLFISNIGGNAPSYIYRLMSELY 344

>EI2BB_HUMAN (P49770) Translation initiation factor eIF-2B beta subunit (eIF-2B|
           GDP-GTP exchange factor) (S20I15) (S20III15)
          Length = 351

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 570 DKTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETY 448
           +K +++  +  Y+P  +I L+IS    N P  +Y LMSE Y
Sbjct: 304 EKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344

>EI2BB_BOVIN (Q5E9B4) Translation initiation factor eIF-2B beta subunit (eIF-2B|
           GDP-GTP exchange factor)
          Length = 351

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 570 DKTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETY 448
           +K +++  +  Y+P  +I L+IS    N P  +Y LMSE Y
Sbjct: 304 EKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344

>EI2BB_RAT (Q62818) Translation initiation factor eIF-2B beta subunit (eIF-2B|
           GDP-GTP exchange factor)
          Length = 351

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 570 DKTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETY 448
           +K +++  +  Y+P  +I L+IS    N P  +Y LMSE Y
Sbjct: 304 EKVSVHCPVFDYVPPDLITLFISNIGGNAPSYVYRLMSELY 344

>AEP3_YEAST (Q12089) ATPase expression protein 3|
          Length = 606

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = +2

Query: 194 YDEMLRNGCKPNLCTYNALIK-----LHGVRGKFP--EMMAVFDDLRSAGFVPDVVTWNT 352
           + +M   G KPN  T+N L++      H  + K P  E++     +R+ G   DV+TW T
Sbjct: 244 FAQMKAEGTKPNTITFNLLLRNVVKNSHIRKTKHPDDEVLFYLRSMRNHGVFADVITWTT 303

>ENGA_CHLMU (Q9PLM3) GTP-binding protein engA|
          Length = 490

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 332 DVVTWNTLLAVFGQNGLDSEVSGVF-KEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEI 508
           ++  W++++ V    G+D E +  F K++ K       +  V L+    RCG+  Q  E+
Sbjct: 42  EIRAWDSIVHVIDTGGVDQESTDRFQKQIHKQALAAAEEASVLLLVVDIRCGITKQDEEL 101

Query: 509 YKRMI 523
            KR++
Sbjct: 102 AKRLL 106

>AEP3_KLULA (Q6CIF3) ATPase expression protein 3|
          Length = 593

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +2

Query: 194 YDEMLRNGCKPNLCTYNALIK-----LHGVRGKFPEMMAVF--DDLRSAGFVPDVVTWNT 352
           Y +M   G  PN+ TYN +++        ++ + P   A+F  + ++      DV+TWNT
Sbjct: 236 YAQMKSEGIAPNVQTYNLMLRNLLRNSRLIKQQLPYREAIFYLERMKKENISADVITWNT 295

Query: 353 LLAVFGQN 376
              +   N
Sbjct: 296 CYFLLKDN 303



 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 458 LISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
           +I  Y     F    E+Y +M   GI P++ TYN +L  L R
Sbjct: 219 VIYYYGNKNNFATCRELYAQMKSEGIAPNVQTYNLMLRNLLR 260

>ENGA_CHLTR (O84709) GTP-binding protein engA|
          Length = 490

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 332 DVVTWNTLLAVFGQNGLDSEVSGVF-KEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEI 508
           ++  W++++ V    G+D E +  F K++ +       +  V L+    RCG+  Q  E+
Sbjct: 42  EIRAWDSIIHVIDTGGVDQESTDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEEL 101

Query: 509 YKRMI 523
            KR++
Sbjct: 102 AKRLL 106

>PRIM_CLOAB (P33655) DNA primase (EC 2.7.7.-)|
          Length = 596

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +2

Query: 266 VRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERD 445
           ++ KF  + +  DD  S+  +  +   N +L+   +N +   V      +KK      + 
Sbjct: 505 LKSKFGFIESRCDDGESSSEIVKIEEQNIMLS---ENNVKDLVDDFITNIKKFRLEESKK 561

Query: 446 TYVSLISSYSRCGLFDQSMEIYKRMIE 526
             +S I      GLFD+++E+ KRM E
Sbjct: 562 KIMSEIKGLEEKGLFDETIELIKRMEE 588

>EI2BB_FUGRU (Q90511) Translation initiation factor eIF-2B beta subunit (eIF-2B|
           GDP-GTP exchange factor) (S20I15)
          Length = 355

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 567 KTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETY 448
           K  ++  +  Y+P  +I L+IS    + P  +Y LMSE Y
Sbjct: 309 KVNVHCPVFDYVPPELITLFISNIGGHAPSYIYRLMSELY 348

>HUTU_THEVO (Q978N4) Probable urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 553

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = +2

Query: 173 IDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNT 352
           +D A+   DE L++G   ++             G       V+D+L     VPDVV+  T
Sbjct: 216 LDEALRLKDEALKSGKPTSI-------------GLLGNAATVYDELMKKNIVPDVVSDQT 262

Query: 353 ----LLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLI 463
               L   +   G   + +  F+E  K GYV  +  Y S++
Sbjct: 263 AAHDLNLGYIPEGYTVQSAAEFREKDKDGYV--KKVYASIV 301

>GUN3_BACS4 (P19570) Endoglucanase C precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 825

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 585 PRASADKTALYVDMSGYIPASIILLYISIDWSNKPHRLYELMSETYVSRSG 433
           P A   +  +  D   Y+ A    L+I+  + N PH +YEL +E   + SG
Sbjct: 176 PNADIYQGGVNEDGEEYLGAKDFFLHIAEKYPNDPHLIYELANEPSSNSSG 226

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 239 YNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDS-EVSGVFKEM 415
           YNA++     +G F E++ V   ++ AG  PD++++   L   G+   D+  +    ++M
Sbjct: 264 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 323

Query: 416 KKSG 427
            + G
Sbjct: 324 SQEG 327



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 443 DTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 583
           D Y +++  ++R G F + + +   + +AG+ PD+ +Y A L  + R
Sbjct: 262 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 308

>ZN553_HUMAN (Q96MX3) Zinc finger protein 553|
          Length = 618

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -2

Query: 358 QECVPGHNIWHKSSRPEVIENSHHLWEL-----SPHPMQLNQCIVGAQVWLTSIPQHFII 194
           ++  P H + + S +PE I+N   LW        P P      ++G   W  +      +
Sbjct: 54  EDLAPDHEVGNVSLKPEGIQNWDDLWVQREGLGKPQPRDRGPRLLGEPRWGQASSDRAAV 113

Query: 193 CPDCCINF 170
           C +C  +F
Sbjct: 114 CGECGKSF 121

>MSRB_DROME (Q8INK9) Methionine-R-sulfoxide reductase (EC 1.8.4.-)|
           (Selenoprotein R)
          Length = 207

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
 Frame = -2

Query: 373 LTKHRQECVPGHNIWHKSSRPEVIE--------NSH--HLWELSPHPMQLNQCIVGAQV 227
           +T HR   +PG NI    + PE I         N+H  H++E  P P +   CI  A +
Sbjct: 124 VTLHRDASIPGGNILLLIAHPERIRTEVRCARCNAHMGHVFEDGPKPTRKRYCINSASI 182

>STE7_YEAST (P06784) Serine/threonine-protein kinase STE7 (EC 2.7.12.2)|
          Length = 515

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 452 VSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTY--NAVLSALARG 586
           + ++  YS CG  D+ + +YKR ++ G      T+     +S +A G
Sbjct: 267 IIILMEYSDCGSLDKILSVYKRFVQRGTVSSKKTWFNELTISKIAYG 313

>KLC_CAEEL (P46822) Kinesin light chain (KLC)|
          Length = 540

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 22/157 (14%)
 Frame = +2

Query: 119 PDVITYTTLISGLDR--------AGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRG 274
           PDV T   +++ + R        A  ++ A+   ++ L         T N L  L G RG
Sbjct: 245 PDVATMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGKRG 304

Query: 275 KFPEMMAVFD---DLRSAGFV---PDVVTWNTLLAVFGQN-GLDSEVSGVFK---EMKKS 424
           KF +   +     ++R        PDV      LA+  QN G   EV   +K   E+ +S
Sbjct: 305 KFKDAEPLCKRALEIREKVLGDDHPDVAKQLNNLALLCQNQGKYEEVEKYYKRALEIYES 364

Query: 425 GYVPE----RDTYVSLISSYSRCGLFDQSMEIYKRMI 523
              P+      T  +L S+Y + G + ++ E+YK+++
Sbjct: 365 KLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQIL 401

>P18_LEITA (Q25423) Protein P18, mitochondrial precursor|
          Length = 187

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 395 SGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 574
           +G  K+    GY  + +T    I    +C  +D++ E+   M      PD+ TYNA L  
Sbjct: 20  AGGAKKYDLFGYEVDTNT-APWIEKVKKCRYYDEAGEVLVSMNVKNCPPDLETYNATLQK 78

Query: 575 L 577
           +
Sbjct: 79  I 79

>SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor|
          Length = 1073

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = -1

Query: 443 PAQEHNQIFSSP*TPQTPRSLNHFDQTPPRVCSRSQHLAQIQQT*GHRKQPSSLGTFPSP 264
           P +E+ Q   SP        L    + PP   ++S  +        HR QP  L   P+P
Sbjct: 724 PVKEYQQNIDSP--KLYSNLLTSRKELPPNTDTKSMAV-------DHRGQPPELAALPTP 774

Query: 263 HAT*SMHCRCTSLAYIHSSTFH 198
            +T  +H +       HS   H
Sbjct: 775 ESTPVLHQKTLQAMKSHSEKAH 796

>HIS7_THETN (P58877) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 194

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 582 RASADKTALYVDMSGYIPASIILLYISIDWSNKPHRLYEL 463
           +AS DK ++    + Y+P    L+ +S+D S +P+  Y+L
Sbjct: 80  KASGDKKSIKRFSTFYVPMDEALVRVSLDISGRPYLYYDL 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,722,278
Number of Sequences: 219361
Number of extensions: 2087477
Number of successful extensions: 5493
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5464
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)