ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30b14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478960.1| Oryza sativa (japonica cultivar-group), mRNA 527 e-146
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 527 e-146
3dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic D... 527 e-146
4gb|AF120774.1|AF120774 HIV-1 patient 2 clone 2D13 from Italy Nef... 44 0.51
5dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone... 44 0.51
6ref|NM_127991.1| Arabidopsis thaliana unknown protein AT2G24290 ... 42 2.0
7gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome... 42 2.0
8emb|AL445586.6| Human DNA sequence from clone RP11-352F21 on chr... 42 2.0
9gb|AY150492.1| Arabidopsis thaliana unknown protein (At2g24290) ... 42 2.0
10gb|AF370163.1| Arabidopsis thaliana unknown protein (At2g24290) ... 42 2.0
11emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 42 2.0
12emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 42 2.0
13gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 ma... 42 2.0
14gb|AC019031.7| Homo sapiens chromosome 8, clone RP11-563O19, com... 42 2.0
15gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosom... 42 2.0
16dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 42 2.0
17gb|AC140941.1| Gallus gallus BAC clone TAM32-50C3 from chromosom... 42 2.0
18emb|AL662829.8| Mouse DNA sequence from clone RP23-188M15 on chr... 42 2.0
19gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-... 40 8.0
20gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, co... 40 8.0
21emb|CR753881.9| Zebrafish DNA sequence from clone DKEY-103A4 in ... 40 8.0
22emb|AL162389.21| Human DNA sequence from clone RP11-380I20 on ch... 40 8.0
23emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 8.0
24gb|AC158143.6| Mus musculus chromosome 5, clone RP23-409I5, comp... 40 8.0
25gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, comple... 40 8.0
26gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.11... 40 8.0
27emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on ch... 40 8.0 
>ref|XM_478960.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2355

 Score =  527 bits (266), Expect = e-146
 Identities = 497/574 (86%)
 Strand = Plus / Plus

                                                                        
Query: 14   cccagtgtggtaacctacaactcactcatttcgtcgtatgtaaaggatgggttattgaaa 73
            ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 931  cccagtgtggtgacctacaactcactcatttcgtcgtatgtgaaggatgggttgttggaa 990

                                                                        
Query: 74   gaggcagccgagctcaaagaggagatggaggttaagggaattcagccagatgtcattaca 133
             ||||||  | ||||||  ||||||||||||| ||||||||  ||||||||||  | |||
Sbjct: 991  caggcagttgcgctcaagcaggagatggaggtgaagggaatgaagccagatgtggtgaca 1050

                                                                        
Query: 134  tacacgacactgatttctggtctggacagggctggcaaaattgatgcagcaatcgggaca 193
            ||||||||| |||| ||||| || ||||| ||||||||||||||||||||||| | |  |
Sbjct: 1051 tacacgacattgatctctggccttgacagagctggcaaaattgatgcagcaattgtggaa 1110

                                                                        
Query: 194  tatgatgaaatgttgaggaatggatgtaagccaaacttgtgcacctacaatgcattgatt 253
            |||||||||||| ||||||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 1111 tatgatgaaatggtgaggaacggatgcaagccaaacctgtgcacatacaatgcattgatc 1170

                                                                        
Query: 254  aagttgcatggggtgaggggaaagttcccagagatgatggctgttttcgatgacctcagg 313
            ||| |||||||||||||||| ||||||||||||||||||||||| || |||||  |||||
Sbjct: 1171 aagatgcatggggtgagggggaagttcccagagatgatggctgtctttgatgagttcagg 1230

                                                                        
Query: 314  tctgctggatttgtgccagatgttgtgacctggaacacactcttggcggtgtttggtcaa 373
            |||||||| |||||||| ||| |||||||||||||||| ||||| || |||||||| || 
Sbjct: 1231 tctgctggttttgtgccggatattgtgacctggaacacgctcttagctgtgtttgggcag 1290

                                                                        
Query: 374  aatggtttagactccgaggtgtctggggtgttcaaggagatgaaaaaatctggttatgtt 433
            |||||||| || || || |||||||||||||||||||||||||| ||| |||||||  | 
Sbjct: 1291 aatggtttggattctgaagtgtctggggtgttcaaggagatgaagaaagctggttacatc 1350

                                                                        
Query: 434  cctgagcgggacacatatgtttcactcattagttcatatagtcggtgtggcttgtttgac 493
            |||||| |||| || ||||||||||| |||||||| |||||||| ||||| |||||||||
Sbjct: 1351 cctgagagggatacgtatgtttcacttattagttcgtatagtcgatgtggtttgtttgac 1410

                                                                        
Query: 494  caatcaatggagatatacaagaggatgattgaagctggtatatatcctgacatatcgaca 553
            | | ||||| ||||||||||||||||||| ||||| |||||||| |||||  | || || 
Sbjct: 1411 ctagcaatgcagatatacaagaggatgatggaagccggtatataccctgatgtttcaact 1470

                                              
Query: 554  tacaatgctgttttatctgcactagctcgtggtg 587
            || ||||||||| | ||||| || ||||||||||
Sbjct: 1471 tataatgctgttctgtctgccctggctcgtggtg 1504
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  527 bits (266), Expect = e-146
 Identities = 497/574 (86%)
 Strand = Plus / Plus

                                                                            
Query: 14       cccagtgtggtaacctacaactcactcatttcgtcgtatgtaaaggatgggttattgaaa 73
                ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 24018531 cccagtgtggtgacctacaactcactcatttcgtcgtatgtgaaggatgggttgttggaa 24018590

                                                                            
Query: 74       gaggcagccgagctcaaagaggagatggaggttaagggaattcagccagatgtcattaca 133
                 ||||||  | ||||||  ||||||||||||| ||||||||  ||||||||||  | |||
Sbjct: 24018591 caggcagttgcgctcaagcaggagatggaggtgaagggaatgaagccagatgtggtgaca 24018650

                                                                            
Query: 134      tacacgacactgatttctggtctggacagggctggcaaaattgatgcagcaatcgggaca 193
                ||||||||| |||| ||||| || ||||| ||||||||||||||||||||||| | |  |
Sbjct: 24018651 tacacgacattgatctctggccttgacagagctggcaaaattgatgcagcaattgtggaa 24018710

                                                                            
Query: 194      tatgatgaaatgttgaggaatggatgtaagccaaacttgtgcacctacaatgcattgatt 253
                |||||||||||| ||||||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 24018711 tatgatgaaatggtgaggaacggatgcaagccaaacctgtgcacatacaatgcattgatc 24018770

                                                                            
Query: 254      aagttgcatggggtgaggggaaagttcccagagatgatggctgttttcgatgacctcagg 313
                ||| |||||||||||||||| ||||||||||||||||||||||| || |||||  |||||
Sbjct: 24018771 aagatgcatggggtgagggggaagttcccagagatgatggctgtctttgatgagttcagg 24018830

                                                                            
Query: 314      tctgctggatttgtgccagatgttgtgacctggaacacactcttggcggtgtttggtcaa 373
                |||||||| |||||||| ||| |||||||||||||||| ||||| || |||||||| || 
Sbjct: 24018831 tctgctggttttgtgccggatattgtgacctggaacacgctcttagctgtgtttgggcag 24018890

                                                                            
Query: 374      aatggtttagactccgaggtgtctggggtgttcaaggagatgaaaaaatctggttatgtt 433
                |||||||| || || || |||||||||||||||||||||||||| ||| |||||||  | 
Sbjct: 24018891 aatggtttggattctgaagtgtctggggtgttcaaggagatgaagaaagctggttacatc 24018950

                                                                            
Query: 434      cctgagcgggacacatatgtttcactcattagttcatatagtcggtgtggcttgtttgac 493
                |||||| |||| || ||||||||||| |||||||| |||||||| ||||| |||||||||
Sbjct: 24018951 cctgagagggatacgtatgtttcacttattagttcgtatagtcgatgtggtttgtttgac 24019010

                                                                            
Query: 494      caatcaatggagatatacaagaggatgattgaagctggtatatatcctgacatatcgaca 553
                | | ||||| ||||||||||||||||||| ||||| |||||||| |||||  | || || 
Sbjct: 24019011 ctagcaatgcagatatacaagaggatgatggaagccggtatataccctgatgtttcaact 24019070

                                                  
Query: 554      tacaatgctgttttatctgcactagctcgtggtg 587
                || ||||||||| | ||||| || ||||||||||
Sbjct: 24019071 tataatgctgttctgtctgccctggctcgtggtg 24019104
to top
>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score =  527 bits (266), Expect = e-146
 Identities = 497/574 (86%)
 Strand = Plus / Plus

                                                                         
Query: 14    cccagtgtggtaacctacaactcactcatttcgtcgtatgtaaaggatgggttattgaaa 73
             ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 60139 cccagtgtggtgacctacaactcactcatttcgtcgtatgtgaaggatgggttgttggaa 60198

                                                                         
Query: 74    gaggcagccgagctcaaagaggagatggaggttaagggaattcagccagatgtcattaca 133
              ||||||  | ||||||  ||||||||||||| ||||||||  ||||||||||  | |||
Sbjct: 60199 caggcagttgcgctcaagcaggagatggaggtgaagggaatgaagccagatgtggtgaca 60258

                                                                         
Query: 134   tacacgacactgatttctggtctggacagggctggcaaaattgatgcagcaatcgggaca 193
             ||||||||| |||| ||||| || ||||| ||||||||||||||||||||||| | |  |
Sbjct: 60259 tacacgacattgatctctggccttgacagagctggcaaaattgatgcagcaattgtggaa 60318

                                                                         
Query: 194   tatgatgaaatgttgaggaatggatgtaagccaaacttgtgcacctacaatgcattgatt 253
             |||||||||||| ||||||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 60319 tatgatgaaatggtgaggaacggatgcaagccaaacctgtgcacatacaatgcattgatc 60378

                                                                         
Query: 254   aagttgcatggggtgaggggaaagttcccagagatgatggctgttttcgatgacctcagg 313
             ||| |||||||||||||||| ||||||||||||||||||||||| || |||||  |||||
Sbjct: 60379 aagatgcatggggtgagggggaagttcccagagatgatggctgtctttgatgagttcagg 60438

                                                                         
Query: 314   tctgctggatttgtgccagatgttgtgacctggaacacactcttggcggtgtttggtcaa 373
             |||||||| |||||||| ||| |||||||||||||||| ||||| || |||||||| || 
Sbjct: 60439 tctgctggttttgtgccggatattgtgacctggaacacgctcttagctgtgtttgggcag 60498

                                                                         
Query: 374   aatggtttagactccgaggtgtctggggtgttcaaggagatgaaaaaatctggttatgtt 433
             |||||||| || || || |||||||||||||||||||||||||| ||| |||||||  | 
Sbjct: 60499 aatggtttggattctgaagtgtctggggtgttcaaggagatgaagaaagctggttacatc 60558

                                                                         
Query: 434   cctgagcgggacacatatgtttcactcattagttcatatagtcggtgtggcttgtttgac 493
             |||||| |||| || ||||||||||| |||||||| |||||||| ||||| |||||||||
Sbjct: 60559 cctgagagggatacgtatgtttcacttattagttcgtatagtcgatgtggtttgtttgac 60618

                                                                         
Query: 494   caatcaatggagatatacaagaggatgattgaagctggtatatatcctgacatatcgaca 553
             | | ||||| ||||||||||||||||||| ||||| |||||||| |||||  | || || 
Sbjct: 60619 ctagcaatgcagatatacaagaggatgatggaagccggtatataccctgatgtttcaact 60678

                                               
Query: 554   tacaatgctgttttatctgcactagctcgtggtg 587
             || ||||||||| | ||||| || ||||||||||
Sbjct: 60679 tataatgctgttctgtctgccctggctcgtggtg 60712
to top
>gb|AF120774.1|AF120774 HIV-1 patient 2 clone 2D13 from Italy Nef gene, complete cds
          Length = 621

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 176 gatgcagcaatcgggacatatgatgaaatg 205
           ||||||||| ||||| ||||||||||||||
Sbjct: 598 gatgcagcactcgggccatatgatgaaatg 569
to top
>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200,
             complete sequence
          Length = 91393

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 344   tggaacacactcttggcggtgtttggtcaaaatggtttagactccgaggtgtctggggtg 403
             ||||||||||| ||||| || ||||| |||||||| || ||||| || || || || |||
Sbjct: 76642 tggaacacacttttggctgtatttggacaaaatggattggactctgaagtatcaggagtg 76701

                           
Query: 404   ttcaaggagatgaa 417
             ||||| || |||||
Sbjct: 76702 ttcaaagaaatgaa 76715
to top
>ref|NM_127991.1| Arabidopsis thaliana unknown protein AT2G24290 mRNA, complete cds
          Length = 884

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  gagctcaaagaggagatggag 103
           |||||||||||||||||||||
Sbjct: 341 gagctcaaagaggagatggag 361
to top
>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence
          Length = 208880

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 488    tttgaccaatcaatggagata 508
              |||||||||||||||||||||
Sbjct: 108129 tttgaccaatcaatggagata 108149
to top
>emb|AL445586.6| Human DNA sequence from clone RP11-352F21 on chromosome 9, complete
             sequence
          Length = 198498

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 278   ttcccagagatgatggctgtt 298
             |||||||||||||||||||||
Sbjct: 42016 ttcccagagatgatggctgtt 41996
to top
>gb|AY150492.1| Arabidopsis thaliana unknown protein (At2g24290) mRNA, complete cds
          Length = 553

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  gagctcaaagaggagatggag 103
           |||||||||||||||||||||
Sbjct: 241 gagctcaaagaggagatggag 261
to top
>gb|AF370163.1| Arabidopsis thaliana unknown protein (At2g24290) mRNA, complete cds
          Length = 900

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  gagctcaaagaggagatggag 103
           |||||||||||||||||||||
Sbjct: 341 gagctcaaagaggagatggag 361
to top
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 53      gtaaaggatgggttattgaaa 73
               |||||||||||||||||||||
Sbjct: 3362795 gtaaaggatgggttattgaaa 3362775



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 521     attgaagctggtatatatcc 540
               ||||||||||||||||||||
Sbjct: 3403268 attgaagctggtatatatcc 3403287
to top
>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 479   tgtggcttgtttgaccaatca 499
             |||||||||||||||||||||
Sbjct: 58728 tgtggcttgtttgaccaatca 58708
to top
>gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete
            sequence
          Length = 79555

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 83   gagctcaaagaggagatggag 103
            |||||||||||||||||||||
Sbjct: 3552 gagctcaaagaggagatggag 3572
to top
>gb|AC019031.7| Homo sapiens chromosome 8, clone RP11-563O19, complete sequence
          Length = 157076

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 393   tgtctggggtgttcaaggaga 413
             |||||||||||||||||||||
Sbjct: 84960 tgtctggggtgttcaaggaga 84980
to top
>gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosome 7, complete sequence
          Length = 199337

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   tttgaccaatcaatggagata 508
             |||||||||||||||||||||
Sbjct: 29962 tttgaccaatcaatggagata 29942
to top
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 53      gtaaaggatgggttattgaaa 73
               |||||||||||||||||||||
Sbjct: 3461390 gtaaaggatgggttattgaaa 3461370



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 521     attgaagctggtatatatcc 540
               ||||||||||||||||||||
Sbjct: 3497778 attgaagctggtatatatcc 3497797
to top
>gb|AC140941.1| Gallus gallus BAC clone TAM32-50C3 from chromosome ul, complete
             sequence
          Length = 116265

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 402   tgttcaaggagatgaaaaaatctgg 426
             ||||||||||||||||||| |||||
Sbjct: 28525 tgttcaaggagatgaaaaattctgg 28501
to top
>emb|AL662829.8| Mouse DNA sequence from clone RP23-188M15 on chromosome 4, complete
             sequence
          Length = 182069

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 191   acatatgatgaaatgttgagg 211
             |||||||||||||||||||||
Sbjct: 86974 acatatgatgaaatgttgagg 86994
to top
>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence
          Length = 88036

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   catggggtgaggggaaagtt 279
             ||||||||||||||||||||
Sbjct: 38344 catggggtgaggggaaagtt 38363
to top
>gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, complete sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   ctggggtgttcaaggagatg 415
             ||||||||||||||||||||
Sbjct: 39275 ctggggtgttcaaggagatg 39294
to top
>emb|CR753881.9| Zebrafish DNA sequence from clone DKEY-103A4 in linkage group 15,
           complete sequence
          Length = 44797

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 413 atgaaaaaatctggttatgttcct 436
           ||||||||| ||||||||||||||
Sbjct: 861 atgaaaaaaactggttatgttcct 884
to top
>emb|AL162389.21| Human DNA sequence from clone RP11-380I20 on chromosome 9 Contains a
             small EDRK-rich factor 2 (SERF2) pseudogene, a ribosomal
             protein L36a pseudogene 6 (RPL36AP6) and two CpG islands,
             complete sequence
          Length = 157017

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 543   acatatcgacatacaatgctgttttatc 570
             |||||| ||||||||||||| |||||||
Sbjct: 78477 acatatagacatacaatgcttttttatc 78504
to top
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     atgatggctgttttcgatga 306
               ||||||||||||||||||||
Sbjct: 1157686 atgatggctgttttcgatga 1157667
to top
>gb|AC158143.6| Mus musculus chromosome 5, clone RP23-409I5, complete sequence
          Length = 191873

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    tgcatggggtgaggggaaag 277
              ||||||||||||||||||||
Sbjct: 109831 tgcatggggtgaggggaaag 109850
to top
>gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, complete sequence
          Length = 194197

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    gtgtctggggtgttcaagga 411
              ||||||||||||||||||||
Sbjct: 179781 gtgtctggggtgttcaagga 179800
to top
>gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence
          Length = 123585

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    ctggggtgttcaaggagatg 415
              ||||||||||||||||||||
Sbjct: 111022 ctggggtgttcaaggagatg 111041
to top
>emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on chromosome X, complete
             sequence
          Length = 136809

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aggcccagtgtggtaaccta 30
             ||||||||||||||||||||
Sbjct: 95292 aggcccagtgtggtaaccta 95273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,360,244
Number of Sequences: 3902068
Number of extensions: 5360244
Number of successful extensions: 98256
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98113
Number of HSP's gapped (non-prelim): 143
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top