>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 86      gtggcggcgctggtcgcgctgatgtg 111
               |||| |||||||||||||||||||||
Sbjct: 1975235 gtggtggcgctggtcgcgctgatgtg 1975210

>gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, complete sequence
          Length = 195428

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 418   tccaagacctctagttctttg 438
             |||||||||||||||||||||
Sbjct: 71398 tccaagacctctagttctttg 71378

>emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 in linkage group 18,
             complete sequence
          Length = 95339

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   ttgactgttgtgttgtctttg 290
             |||||||||||||||||||||
Sbjct: 54444 ttgactgttgtgttgtctttg 54424

>gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, complete sequence
          Length = 40961

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    ggtcatggcagcagcaatgct 69
             |||||||||||||||||||||
Sbjct: 16414 ggtcatggcagcagcaatgct 16394

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 86      gtggcggcgctggtcgcgctg 106
               |||||||||||||||||||||
Sbjct: 4528294 gtggcggcgctggtcgcgctg 4528314

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 90      cggcgctggtcgcgctgatgt 110
               |||||||||||||||||||||
Sbjct: 2784343 cggcgctggtcgcgctgatgt 2784363



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 87      tggcggcgctggtcgcgctg 106
               ||||||||||||||||||||
Sbjct: 7131628 tggcggcgctggtcgcgctg 7131609

>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18,
            complete sequence
          Length = 120346

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ttgactgttgtgttgtctttg 290
            |||||||||||||||||||||
Sbjct: 8317 ttgactgttgtgttgtctttg 8337

>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   tgtgtgtcatctgagtctgt 520
             ||||||||||||||||||||
Sbjct: 96748 tgtgtgtcatctgagtctgt 96729

>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric
              region
          Length = 326112

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    ttttatttgcttatgtgtgt 507
              ||||||||||||||||||||
Sbjct: 208641 ttttatttgcttatgtgtgt 208660

>ref|XM_705503.1| Candida albicans SC5314 putative spliceosomal translocase-like
           protein Snu114p (CaO19.144), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 tctgcaagatgaagaagaag 325
           ||||||||||||||||||||
Sbjct: 141 tctgcaagatgaagaagaag 160

>ref|XM_705490.1| Candida albicans SC5314 putative spliceosomal translocase-like
           protein Snu114p (CaO19.7784), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 tctgcaagatgaagaagaag 325
           ||||||||||||||||||||
Sbjct: 141 tctgcaagatgaagaagaag 160

>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    tctgttctatttttctatgt 535
              ||||||||||||||||||||
Sbjct: 135110 tctgttctatttttctatgt 135129

>gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complete sequence
          Length = 133439

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 481   tgtttgcttttatttgcttatgtg 504
             ||||| ||||||||||||||||||
Sbjct: 35953 tgtttacttttatttgcttatgtg 35930

>emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chromosome 17, complete
             sequence
          Length = 176004

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   gtttgcttttatttgcttat 501
             ||||||||||||||||||||
Sbjct: 34149 gtttgcttttatttgcttat 34130

>emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 on chromosome Xq21.1-21.33
             Contains a CpG island, complete sequence
          Length = 80730

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   tctgttctatttttctatgt 535
             ||||||||||||||||||||
Sbjct: 55758 tctgttctatttttctatgt 55777

>emb|AL590422.15| Human DNA sequence from clone RP11-444D13 on chromosome 1 Contains part
             of the RGL1 gene for ral guanine nucleotide dissociation
             stimulator-like 1 and a novel gene, complete sequence
          Length = 198312

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   tgtttgcttttatttgctta 500
             ||||||||||||||||||||
Sbjct: 33834 tgtttgcttttatttgctta 33853

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      gcggcgctggtcgcgctgat 108
               ||||||||||||||||||||
Sbjct: 1205292 gcggcgctggtcgcgctgat 1205273

>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 562     ttgtaccaatcagaataaat 581
               ||||||||||||||||||||
Sbjct: 1623959 ttgtaccaatcagaataaat 1623940

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 86      gtggcggcgctggtcgcgctgatg 109
               |||||||||||||||| |||||||
Sbjct: 2897605 gtggcggcgctggtcgggctgatg 2897582

>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10
          Length = 348450

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ggtcatggcagcagcaatgc 68
              ||||||||||||||||||||
Sbjct: 340317 ggtcatggcagcagcaatgc 340298

>emb|AL669833.7| Mouse DNA sequence from clone RP23-51C16 on chromosome 11, complete
             sequence
          Length = 48352

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   tctgttctatttttctatgt 535
             ||||||||||||||||||||
Sbjct: 20085 tctgttctatttttctatgt 20066

>gb|AC116315.2| Homo sapiens chromosome 1 clone RP11-211J9, complete sequence
          Length = 154057

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 485  tgcttttatttgcttatgtg 504
            ||||||||||||||||||||
Sbjct: 6757 tgcttttatttgcttatgtg 6776

>emb|BX248392.16| Zebrafish DNA sequence from clone CH211-220F12 in linkage group 18,
              complete sequence
          Length = 183594

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    ctgttctatttttctatgtt 536
              ||||||||||||||||||||
Sbjct: 182354 ctgttctatttttctatgtt 182373

>gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306,  section 434 of 469 of the
            complete genome
          Length = 9445

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   cgttgccgtggcggcgctgg 98
            ||||||||||||||||||||
Sbjct: 6329 cgttgccgtggcggcgctgg 6348

>gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, complete sequence
          Length = 135063

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   tgcttttatttgcttatgtg 504
             ||||||||||||||||||||
Sbjct: 81560 tgcttttatttgcttatgtg 81579

>gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471
          Length = 36241

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   ggtcatggcagcagcaatgc 68
            ||||||||||||||||||||
Sbjct: 4826 ggtcatggcagcagcaatgc 4845

>gb|AC008900.5| Homo sapiens chromosome 5 clone CTD-2242C17, complete sequence
          Length = 166253

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   cagggagaaggcctgctagt 389
             ||||||||||||||||||||
Sbjct: 45361 cagggagaaggcctgctagt 45380

>gb|AC133597.5| Mus musculus BAC clone RP24-313B5 from chromosome 16, complete sequence
          Length = 192699

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    tgtgtgtcatctgagtctgt 520
              ||||||||||||||||||||
Sbjct: 192518 tgtgtgtcatctgagtctgt 192537

>gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O8, complete sequence
          Length = 114802

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagggagaaggcctgctagt 389
            ||||||||||||||||||||
Sbjct: 7064 cagggagaaggcctgctagt 7045

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      gcggcgctggtcgcgctgat 108
               ||||||||||||||||||||
Sbjct: 2340324 gcggcgctggtcgcgctgat 2340305

>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   tctgttctatttttctatgt 535
             ||||||||||||||||||||
Sbjct: 82792 tctgttctatttttctatgt 82773

>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence
          Length = 132623

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   tctgttctatttttctatgt 535
             ||||||||||||||||||||
Sbjct: 33016 tctgttctatttttctatgt 32997

>gb|AC155723.6| Mus musculus 6 BAC RP24-131B7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183349

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 572    cagaataaatttgggtggaattttttgt 599
              |||||||| |||||||||||| ||||||
Sbjct: 99990  cagaataagtttgggtggaatgttttgt 100017

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 90      cggcgctggtcgcgctgatg 109
               ||||||||||||||||||||
Sbjct: 1722427 cggcgctggtcgcgctgatg 1722446

>gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, complete sequence
          Length = 118955

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 516  tctgttctatttttctatgt 535
            ||||||||||||||||||||
Sbjct: 5880 tctgttctatttttctatgt 5899

>emb|BX470142.4| Zebrafish DNA sequence from clone CH211-59C17 in linkage group 18,
             complete sequence
          Length = 58289

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 517   ctgttctatttttctatgtt 536
             ||||||||||||||||||||
Sbjct: 40832 ctgttctatttttctatgtt 40813

>emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 in linkage group 20,
              complete sequence
          Length = 151552

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ttgtttgcttttatttgctt 499
              ||||||||||||||||||||
Sbjct: 126322 ttgtttgcttttatttgctt 126303

>emb|BX276107.12| Zebrafish DNA sequence from clone CH211-218C17 in linkage group 18,
           complete sequence
          Length = 46296

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 517 ctgttctatttttctatgtt 536
           ||||||||||||||||||||
Sbjct: 760 ctgttctatttttctatgtt 779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,698,635
Number of Sequences: 3902068
Number of extensions: 5698635
Number of successful extensions: 123394
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122895
Number of HSP's gapped (non-prelim): 499
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)