ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 147 5e-32
3emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa... 147 5e-32
4emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa... 147 5e-32
5gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, compl... 44 0.55
6gb|AY573304.1| Koelpinia turanica isolate bg.142 tRNA-Thr gene, ... 42 2.2
7gb|AY525374.1| Tragopogon dubius trnT-trnL intergenic spacer, pa... 42 2.2
8emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 ... 42 2.2
9ref|XM_669969.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.2
10gb|DQ451186.1| Hieracium laevigatum trnT-trnL intergenic spacer,... 42 2.2
11emb|AL589645.10| Human DNA sequence from clone RP11-251H13 on ch... 42 2.2
12gb|AE002160.2| Chlamydia muridarum Nigg, complete genome 42 2.2
13gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome... 42 2.2
14emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in ... 42 2.2
15gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 40 8.5
16gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
17ref|XM_717437.1| Candida albicans SC5314 hypothetical protein (C... 40 8.5
18ref|XM_717298.1| Candida albicans SC5314 hypothetical protein (C... 40 8.5
19emb|CT010441.11| Mouse DNA sequence from clone CH29-521N19 on ch... 40 8.5
20gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, comp... 40 8.5
21emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chro... 40 8.5
22gb|AY152828.1| Felis catus clone PAC f20 major histocompatiblity... 40 8.5
23gb|AC110776.5| Homo sapiens BAC clone RP11-291M14 from 4, comple... 40 8.5
24gb|AC158674.10| Mus musculus 6 BAC RP23-54E12 (Roswell Park Canc... 40 8.5
25gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 8.5
26dbj|AK031392.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 8.5
27dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
28emb|AJ569240.1|DSI569240 Drosophila simulans chromosome fragment... 40 8.5
29emb|AJ569261.1|DME569261 Drosophila melanogaster chromosome frag... 40 8.5
30emb|AJ569258.1|DME569258 Drosophila melanogaster chromosome frag... 40 8.5
31emb|AJ569257.1|DME569257 Drosophila melanogaster chromosome frag... 40 8.5
32dbj|AB062094.2| Arabidopsis thaliana DNA, chromosome 5 centromer... 40 8.5
33gb|AC154912.3| Mus musculus BAC clone RP23-23B10 from 17, comple... 40 8.5
34emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in... 40 8.5
35emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in... 40 8.5
36emb|BX255967.4| Zebrafish DNA sequence from clone CH211-191G22 i... 40 8.5
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                            
Query: 228      agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287
                |||| ||| |||||||| |  |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 24961423 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 24961482

                                                                            
Query: 288      ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347
                |||||||||| | |  ||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 24961483 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 24961542

                                                                  
Query: 348      acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397
                |||| ||| |   ||||||||||| ||||| ||   ||||||||||||||
Sbjct: 24961543 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 24961592



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 93/110 (84%)
 Strand = Plus / Plus

                                                                            
Query: 39       aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98
                |||||||||||||||| ||| | ||||||| | ||||| | | ||||||||   || |||
Sbjct: 24961231 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 24961290

                                                                  
Query: 99       tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148
                |||||||| ||||||||||||||||||||||| | ||||||  |||||||
Sbjct: 24961291 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 24961340



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                            
Query: 496      caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555
                |||||||| ||  ||||||| ||||||| |||| ||||| | ||||  || ||||  |||
Sbjct: 24961694 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 24961753

                                                                            
Query: 556      atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615
                |||||||||| | ||| ||| ||||||||  |||||| ||||| ||||| ||||||||||
Sbjct: 24961754 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 24961813

                  
Query: 616      ta 617
                ||
Sbjct: 24961814 ta 24961815



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                            
Query: 228      agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287
                |||| ||| |||||||| |  |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 24889629 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 24889688

                                                                            
Query: 288      ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347
                |||||||||| | |  ||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 24889689 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 24889748

                                                                  
Query: 348      acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397
                |||| ||| |   ||||||||||| ||||| ||   ||||||||||||||
Sbjct: 24889749 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 24889798



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 93/110 (84%)
 Strand = Plus / Plus

                                                                            
Query: 39       aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98
                |||||||||||||||| ||| | ||||||| | ||||| | | ||||||||   || |||
Sbjct: 24889437 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 24889496

                                                                  
Query: 99       tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148
                |||||||| ||||||||||||||||||||||| | ||||||  |||||||
Sbjct: 24889497 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 24889546



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                            
Query: 496      caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555
                |||||||| ||  ||||||| ||||||| |||| ||||| | ||||  || ||||  |||
Sbjct: 24889900 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 24889959

                                                                            
Query: 556      atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615
                |||||||||| | ||| ||| ||||||||  |||||| ||||| ||||| ||||||||||
Sbjct: 24889960 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 24890019

                  
Query: 616      ta 617
                ||
Sbjct: 24890020 ta 24890021



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>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 132741

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 228  agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287
            |||| ||| |||||||| |  |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 3445 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 3386

                                                                        
Query: 288  ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347
            |||||||||| | |  ||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 3385 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 3326

                                                              
Query: 348  acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397
            |||| ||| |   ||||||||||| ||||| ||   ||||||||||||||
Sbjct: 3325 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 3276



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                        
Query: 39   aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98
            |||||||||||||||| ||| | ||||||| | ||||| | | ||||||||   || |||
Sbjct: 3637 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 3578

                                                              
Query: 99   tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148
            |||||||| ||||||||||||||||||||||| | ||||||  |||||||
Sbjct: 3577 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 3528



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                        
Query: 496  caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555
            |||||||| ||  ||||||| ||||||| |||| ||||| | ||||  || ||||  |||
Sbjct: 3174 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 3115

                                                                        
Query: 556  atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615
            |||||||||| | ||| ||| ||||||||  |||||| ||||| ||||| ||||||||||
Sbjct: 3114 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 3055

              
Query: 616  ta 617
            ||
Sbjct: 3054 ta 3053



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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                          
Query: 228    agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287
              |||| ||| |||||||| |  |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 145744 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 145685

                                                                          
Query: 288    ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347
              |||||||||| | |  ||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 145684 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 145625

                                                                
Query: 348    acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397
              |||| ||| |   ||||||||||| ||||| ||   ||||||||||||||
Sbjct: 145624 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 145575



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                          
Query: 39     aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98
              |||||||||||||||| ||| | ||||||| | ||||| | | ||||||||   || |||
Sbjct: 145936 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 145877

                                                                
Query: 99     tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148
              |||||||| ||||||||||||||||||||||| | ||||||  |||||||
Sbjct: 145876 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 145827



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                          
Query: 496    caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555
              |||||||| ||  ||||||| ||||||| |||| ||||| | ||||  || ||||  |||
Sbjct: 145473 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 145414

                                                                          
Query: 556    atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615
              |||||||||| | ||| ||| ||||||||  |||||| ||||| ||||| ||||||||||
Sbjct: 145413 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 145354

                
Query: 616    ta 617
              ||
Sbjct: 145353 ta 145352



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>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence
          Length = 176418

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 535    taatgaatattgtgatgtcaga 556
              ||||||||||||||||||||||
Sbjct: 128418 taatgaatattgtgatgtcaga 128439



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>gb|AY573304.1| Koelpinia turanica isolate bg.142 tRNA-Thr gene, partial sequence;
           trnT-trnL intergenic spacer, complete sequence; and
           tRNA-Leu gene, partial sequence; chloroplast
          Length = 635

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 278 tatttttgaattcaaatcata 298
           |||||||||||||||||||||
Sbjct: 271 tatttttgaattcaaatcata 291



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>gb|AY525374.1| Tragopogon dubius trnT-trnL intergenic spacer, partial sequence;
           chloroplast
          Length = 536

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 279 atttttgaattcaaatcatat 299
           |||||||||||||||||||||
Sbjct: 236 atttttgaattcaaatcatat 256



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>emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 in linkage group 5,
              complete sequence
          Length = 147626

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 413    acagttcatgcattacaaaca 433
              |||||||||||||||||||||
Sbjct: 142713 acagttcatgcattacaaaca 142733



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>ref|XM_669969.1| Plasmodium berghei strain ANKA hypothetical protein (PB000648.03.0)
           partial mRNA
          Length = 2361

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 530 tcagataatgaatattgtgat 550
           |||||||||||||||||||||
Sbjct: 964 tcagataatgaatattgtgat 984



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>gb|DQ451186.1| Hieracium laevigatum trnT-trnL intergenic spacer, partial sequence;
           chloroplast
          Length = 552

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 279 atttttgaattcaaatcatat 299
           |||||||||||||||||||||
Sbjct: 253 atttttgaattcaaatcatat 273



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>emb|AL589645.10| Human DNA sequence from clone RP11-251H13 on chromosome 9, complete
             sequence
          Length = 48323

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 438   aaagagctaaacagaaataca 458
             |||||||||||||||||||||
Sbjct: 29830 aaagagctaaacagaaataca 29810



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>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome
          Length = 1072950

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 207    tggagggaatggatgttaatcagca 231
              ||||||||||||||| |||||||||
Sbjct: 509580 tggagggaatggatgctaatcagca 509604



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>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence
          Length = 189253

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 277   ttatttttgaattcaaatcatatgt 301
             ||||||||||||||| |||||||||
Sbjct: 68158 ttatttttgaattcagatcatatgt 68182



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>emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in linkage group 5,
            complete sequence
          Length = 227454

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  acagttcatgcattacaaaca 433
            |||||||||||||||||||||
Sbjct: 4419 acagttcatgcattacaaaca 4399



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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   tttcagcaatgtagatttac 349
             ||||||||||||||||||||
Sbjct: 96022 tttcagcaatgtagatttac 96003



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>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0074E19 map R1938, complete sequence
          Length = 160847

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 557   tgctattcctaaaaatacctttca 580
             ||||||||| ||||||||||||||
Sbjct: 62230 tgctattccaaaaaatacctttca 62253



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>ref|XM_717437.1| Candida albicans SC5314 hypothetical protein (CaO19_1481), mRNA
          Length = 2517

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 532  agataatgaatattgtgatg 551
            ||||||||||||||||||||
Sbjct: 1701 agataatgaatattgtgatg 1682



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>ref|XM_717298.1| Candida albicans SC5314 hypothetical protein (CaO19_9056), mRNA
          Length = 2517

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 532  agataatgaatattgtgatg 551
            ||||||||||||||||||||
Sbjct: 1701 agataatgaatattgtgatg 1682



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>emb|CT010441.11| Mouse DNA sequence from clone CH29-521N19 on chromosome 17, complete
             sequence
          Length = 235642

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ttctgagtcctggtgccttt 485
             ||||||||||||||||||||
Sbjct: 44360 ttctgagtcctggtgccttt 44341



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>gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, complete sequence
          Length = 172812

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    agacactgattcaaaggtga 93
             ||||||||||||||||||||
Sbjct: 67060 agacactgattcaaaggtga 67079



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>emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chromosome 13 Contains a
             pseudogene similar to part of protocadherin 8 (PCDH8), a
             novel gene and a CpG island, complete sequence
          Length = 176056

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 567   aaaaatacctttcagattga 586
             ||||||||||||||||||||
Sbjct: 55783 aaaaatacctttcagattga 55802



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>gb|AY152828.1| Felis catus clone PAC f20 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 87684

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tggagaaactgtggagggaa 215
             ||||||||||||||||||||
Sbjct: 48987 tggagaaactgtggagggaa 49006



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>gb|AC110776.5| Homo sapiens BAC clone RP11-291M14 from 4, complete sequence
          Length = 138838

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   caccagaccttctgagtcct 476
             ||||||||||||||||||||
Sbjct: 16297 caccagaccttctgagtcct 16316



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>gb|AC158674.10| Mus musculus 6 BAC RP23-54E12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 211124

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ggttcgtccactgctgttct 184
             ||||||||||||||||||||
Sbjct: 77650 ggttcgtccactgctgttct 77669



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    agccttctgttatttttgaa 287
              ||||||||||||||||||||
Sbjct: 486499 agccttctgttatttttgaa 486518



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>dbj|AK031392.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030422H21
            product:unclassifiable, full insert sequence
          Length = 1932

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 466  ttctgagtcctggtgccttt 485
            ||||||||||||||||||||
Sbjct: 1429 ttctgagtcctggtgccttt 1410



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 557     tgctattcctaaaaatacctttca 580
               ||||||||| ||||||||||||||
Sbjct: 2286231 tgctattccaaaaaatacctttca 2286254



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>emb|AJ569240.1|DSI569240 Drosophila simulans chromosome fragment, ID 177_SIM
          Length = 485

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 aattcaaatcatatgttgttgatc 309
           |||||||||| |||||||||||||
Sbjct: 451 aattcaaatcgtatgttgttgatc 428



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>emb|AJ569261.1|DME569261 Drosophila melanogaster chromosome fragment, ID 177ZBMEL377
          Length = 415

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 aattcaaatcatatgttgttgatc 309
           |||||||| |||||||||||||||
Sbjct: 381 aattcaaagcatatgttgttgatc 358



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>emb|AJ569258.1|DME569258 Drosophila melanogaster chromosome fragment, ID 177ZBMEL191
          Length = 409

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 aattcaaatcatatgttgttgatc 309
           |||||||| |||||||||||||||
Sbjct: 375 aattcaaagcatatgttgttgatc 352



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>emb|AJ569257.1|DME569257 Drosophila melanogaster chromosome fragment, ID 177ZBMEL186
          Length = 409

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 aattcaaatcatatgttgttgatc 309
           |||||||| |||||||||||||||
Sbjct: 375 aattcaaagcatatgttgttgatc 352



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>dbj|AB062094.2| Arabidopsis thaliana DNA, chromosome 5 centromere region, BAC
             clone:F23B23
          Length = 60290

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   atccattttccgaaaaacaa 140
             ||||||||||||||||||||
Sbjct: 55281 atccattttccgaaaaacaa 55300



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>gb|AC154912.3| Mus musculus BAC clone RP23-23B10 from 17, complete sequence
          Length = 228141

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    ttctgagtcctggtgccttt 485
              ||||||||||||||||||||
Sbjct: 125261 ttctgagtcctggtgccttt 125242



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>emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in linkage group 4,
              complete sequence
          Length = 201932

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 560    tattcctaaaaatacctttcagat 583
              |||||| |||||||||||||||||
Sbjct: 119894 tattcccaaaaatacctttcagat 119871



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>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13,
              complete sequence
          Length = 220733

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    tcagatgctattcctaaaaa 571
              ||||||||||||||||||||
Sbjct: 156988 tcagatgctattcctaaaaa 156969



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>emb|BX255967.4| Zebrafish DNA sequence from clone CH211-191G22 in linkage group 7,
             complete sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 552   tcagatgctattcctaaaaa 571
             ||||||||||||||||||||
Sbjct: 17468 tcagatgctattcctaaaaa 17449



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 557     tgctattcctaaaaatacctttca 580
               ||||||||| ||||||||||||||
Sbjct: 2294012 tgctattccaaaaaatacctttca 2294035


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,377,957
Number of Sequences: 3902068
Number of extensions: 6377957
Number of successful extensions: 120446
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120176
Number of HSP's gapped (non-prelim): 270
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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