| Clone Name | bags30b03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 228 agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287 |||| ||| |||||||| | |||||||| ||||||||||| |||||||||||||||||| Sbjct: 24961423 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 24961482 Query: 288 ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347 |||||||||| | | ||||||||||| ||| ||||||||| |||||||||||||||||| Sbjct: 24961483 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 24961542 Query: 348 acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397 |||| ||| | ||||||||||| ||||| || |||||||||||||| Sbjct: 24961543 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 24961592 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 39 aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98 |||||||||||||||| ||| | ||||||| | ||||| | | |||||||| || ||| Sbjct: 24961231 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 24961290 Query: 99 tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148 |||||||| ||||||||||||||||||||||| | |||||| ||||||| Sbjct: 24961291 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 24961340 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 496 caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555 |||||||| || ||||||| ||||||| |||| ||||| | |||| || |||| ||| Sbjct: 24961694 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 24961753 Query: 556 atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615 |||||||||| | ||| ||| |||||||| |||||| ||||| ||||| |||||||||| Sbjct: 24961754 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 24961813 Query: 616 ta 617 || Sbjct: 24961814 ta 24961815
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 228 agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287 |||| ||| |||||||| | |||||||| ||||||||||| |||||||||||||||||| Sbjct: 24889629 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 24889688 Query: 288 ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347 |||||||||| | | ||||||||||| ||| ||||||||| |||||||||||||||||| Sbjct: 24889689 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 24889748 Query: 348 acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397 |||| ||| | ||||||||||| ||||| || |||||||||||||| Sbjct: 24889749 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 24889798 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 39 aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98 |||||||||||||||| ||| | ||||||| | ||||| | | |||||||| || ||| Sbjct: 24889437 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 24889496 Query: 99 tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148 |||||||| ||||||||||||||||||||||| | |||||| ||||||| Sbjct: 24889497 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 24889546 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 496 caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555 |||||||| || ||||||| ||||||| |||| ||||| | |||| || |||| ||| Sbjct: 24889900 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 24889959 Query: 556 atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615 |||||||||| | ||| ||| |||||||| |||||| ||||| ||||| |||||||||| Sbjct: 24889960 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 24890019 Query: 616 ta 617 || Sbjct: 24890020 ta 24890021
>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132741 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Minus Query: 228 agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287 |||| ||| |||||||| | |||||||| ||||||||||| |||||||||||||||||| Sbjct: 3445 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 3386 Query: 288 ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347 |||||||||| | | ||||||||||| ||| ||||||||| |||||||||||||||||| Sbjct: 3385 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 3326 Query: 348 acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397 |||| ||| | ||||||||||| ||||| || |||||||||||||| Sbjct: 3325 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 3276 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 39 aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98 |||||||||||||||| ||| | ||||||| | ||||| | | |||||||| || ||| Sbjct: 3637 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 3578 Query: 99 tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148 |||||||| ||||||||||||||||||||||| | |||||| ||||||| Sbjct: 3577 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 3528 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 496 caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555 |||||||| || ||||||| ||||||| |||| ||||| | |||| || |||| ||| Sbjct: 3174 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 3115 Query: 556 atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615 |||||||||| | ||| ||| |||||||| |||||| ||||| ||||| |||||||||| Sbjct: 3114 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 3055 Query: 616 ta 617 || Sbjct: 3054 ta 3053
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Minus Query: 228 agcaatttatacaatgaatgtggtgtgatacatcatgaaaagccttctgttatttttgaa 287 |||| ||| |||||||| | |||||||| ||||||||||| |||||||||||||||||| Sbjct: 145744 agcactttctacaatgactcaggtgtgatgcatcatgaaaaaccttctgttatttttgaa 145685 Query: 288 ttcaaatcatatgttgttgatccttaccaaaatacaagtgggtttcagcaatgtagattt 347 |||||||||| | | ||||||||||| ||| ||||||||| |||||||||||||||||| Sbjct: 145684 ttcaaatcatttctcattgatccttacaaaagtacaagtggttttcagcaatgtagattt 145625 Query: 348 acagctggtaaactaaaccttgatctggatcatcggtgtgcttcatcaac 397 |||| ||| | ||||||||||| ||||| || |||||||||||||| Sbjct: 145624 acagttgggagggtaaaccttgatgtggattatttatgtgcttcatcaac 145575 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 39 aggaattcatcttttgaaaccgcagagtttgccgaagacactgattcaaaggtgatcctc 98 |||||||||||||||| ||| | ||||||| | ||||| | | |||||||| || ||| Sbjct: 145936 aggaattcatcttttggaacagaagagttttctgaagatattaattcaaagacaatactc 145877 Query: 99 tggagtgattctgccagtatgcatccattttccgaaaaacaatctgatga 148 |||||||| ||||||||||||||||||||||| | |||||| ||||||| Sbjct: 145876 tggagtgactctgccagtatgcatccattttctggaaaacagcctgatga 145827 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 496 caagtggagttcttgataaactgagatcgttcagtcagataatgaatattgtgatgtcag 555 |||||||| || ||||||| ||||||| |||| ||||| | |||| || |||| ||| Sbjct: 145473 caagtggaattgctgataaattgagatcattcaatcagagactgaagtttttgattgcag 145414 Query: 556 atgctattcctaaaaatacctttcagattgaagcactgattgctggtcccagtatcaggt 615 |||||||||| | ||| ||| |||||||| |||||| ||||| ||||| |||||||||| Sbjct: 145413 atgctattccaataaacacccttcagatttcagcactcattgcaggtccaagtatcaggt 145354 Query: 616 ta 617 || Sbjct: 145353 ta 145352
>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence Length = 176418 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 535 taatgaatattgtgatgtcaga 556 |||||||||||||||||||||| Sbjct: 128418 taatgaatattgtgatgtcaga 128439
>gb|AY573304.1| Koelpinia turanica isolate bg.142 tRNA-Thr gene, partial sequence; trnT-trnL intergenic spacer, complete sequence; and tRNA-Leu gene, partial sequence; chloroplast Length = 635 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 tatttttgaattcaaatcata 298 ||||||||||||||||||||| Sbjct: 271 tatttttgaattcaaatcata 291
>gb|AY525374.1| Tragopogon dubius trnT-trnL intergenic spacer, partial sequence; chloroplast Length = 536 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 atttttgaattcaaatcatat 299 ||||||||||||||||||||| Sbjct: 236 atttttgaattcaaatcatat 256
>emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 in linkage group 5, complete sequence Length = 147626 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 acagttcatgcattacaaaca 433 ||||||||||||||||||||| Sbjct: 142713 acagttcatgcattacaaaca 142733
>ref|XM_669969.1| Plasmodium berghei strain ANKA hypothetical protein (PB000648.03.0) partial mRNA Length = 2361 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 tcagataatgaatattgtgat 550 ||||||||||||||||||||| Sbjct: 964 tcagataatgaatattgtgat 984
>gb|DQ451186.1| Hieracium laevigatum trnT-trnL intergenic spacer, partial sequence; chloroplast Length = 552 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 atttttgaattcaaatcatat 299 ||||||||||||||||||||| Sbjct: 253 atttttgaattcaaatcatat 273
>emb|AL589645.10| Human DNA sequence from clone RP11-251H13 on chromosome 9, complete sequence Length = 48323 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 aaagagctaaacagaaataca 458 ||||||||||||||||||||| Sbjct: 29830 aaagagctaaacagaaataca 29810
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome Length = 1072950 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 tggagggaatggatgttaatcagca 231 ||||||||||||||| ||||||||| Sbjct: 509580 tggagggaatggatgctaatcagca 509604
>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence Length = 189253 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 ttatttttgaattcaaatcatatgt 301 ||||||||||||||| ||||||||| Sbjct: 68158 ttatttttgaattcagatcatatgt 68182
>emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in linkage group 5, complete sequence Length = 227454 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 acagttcatgcattacaaaca 433 ||||||||||||||||||||| Sbjct: 4419 acagttcatgcattacaaaca 4399
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 tttcagcaatgtagatttac 349 |||||||||||||||||||| Sbjct: 96022 tttcagcaatgtagatttac 96003
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 557 tgctattcctaaaaatacctttca 580 ||||||||| |||||||||||||| Sbjct: 62230 tgctattccaaaaaatacctttca 62253
>ref|XM_717437.1| Candida albicans SC5314 hypothetical protein (CaO19_1481), mRNA Length = 2517 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 agataatgaatattgtgatg 551 |||||||||||||||||||| Sbjct: 1701 agataatgaatattgtgatg 1682
>ref|XM_717298.1| Candida albicans SC5314 hypothetical protein (CaO19_9056), mRNA Length = 2517 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 agataatgaatattgtgatg 551 |||||||||||||||||||| Sbjct: 1701 agataatgaatattgtgatg 1682
>emb|CT010441.11| Mouse DNA sequence from clone CH29-521N19 on chromosome 17, complete sequence Length = 235642 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 ttctgagtcctggtgccttt 485 |||||||||||||||||||| Sbjct: 44360 ttctgagtcctggtgccttt 44341
>gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, complete sequence Length = 172812 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agacactgattcaaaggtga 93 |||||||||||||||||||| Sbjct: 67060 agacactgattcaaaggtga 67079
>emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chromosome 13 Contains a pseudogene similar to part of protocadherin 8 (PCDH8), a novel gene and a CpG island, complete sequence Length = 176056 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 aaaaatacctttcagattga 586 |||||||||||||||||||| Sbjct: 55783 aaaaatacctttcagattga 55802
>gb|AY152828.1| Felis catus clone PAC f20 major histocompatiblity complex classical class II region, partial sequence Length = 87684 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 tggagaaactgtggagggaa 215 |||||||||||||||||||| Sbjct: 48987 tggagaaactgtggagggaa 49006
>gb|AC110776.5| Homo sapiens BAC clone RP11-291M14 from 4, complete sequence Length = 138838 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 caccagaccttctgagtcct 476 |||||||||||||||||||| Sbjct: 16297 caccagaccttctgagtcct 16316
>gb|AC158674.10| Mus musculus 6 BAC RP23-54E12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211124 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ggttcgtccactgctgttct 184 |||||||||||||||||||| Sbjct: 77650 ggttcgtccactgctgttct 77669
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 agccttctgttatttttgaa 287 |||||||||||||||||||| Sbjct: 486499 agccttctgttatttttgaa 486518
>dbj|AK031392.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030422H21 product:unclassifiable, full insert sequence Length = 1932 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 ttctgagtcctggtgccttt 485 |||||||||||||||||||| Sbjct: 1429 ttctgagtcctggtgccttt 1410
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 557 tgctattcctaaaaatacctttca 580 ||||||||| |||||||||||||| Sbjct: 2286231 tgctattccaaaaaatacctttca 2286254
>emb|AJ569240.1|DSI569240 Drosophila simulans chromosome fragment, ID 177_SIM Length = 485 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aattcaaatcatatgttgttgatc 309 |||||||||| ||||||||||||| Sbjct: 451 aattcaaatcgtatgttgttgatc 428
>emb|AJ569261.1|DME569261 Drosophila melanogaster chromosome fragment, ID 177ZBMEL377 Length = 415 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aattcaaatcatatgttgttgatc 309 |||||||| ||||||||||||||| Sbjct: 381 aattcaaagcatatgttgttgatc 358
>emb|AJ569258.1|DME569258 Drosophila melanogaster chromosome fragment, ID 177ZBMEL191 Length = 409 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aattcaaatcatatgttgttgatc 309 |||||||| ||||||||||||||| Sbjct: 375 aattcaaagcatatgttgttgatc 352
>emb|AJ569257.1|DME569257 Drosophila melanogaster chromosome fragment, ID 177ZBMEL186 Length = 409 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aattcaaatcatatgttgttgatc 309 |||||||| ||||||||||||||| Sbjct: 375 aattcaaagcatatgttgttgatc 352
>dbj|AB062094.2| Arabidopsis thaliana DNA, chromosome 5 centromere region, BAC clone:F23B23 Length = 60290 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atccattttccgaaaaacaa 140 |||||||||||||||||||| Sbjct: 55281 atccattttccgaaaaacaa 55300
>gb|AC154912.3| Mus musculus BAC clone RP23-23B10 from 17, complete sequence Length = 228141 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 ttctgagtcctggtgccttt 485 |||||||||||||||||||| Sbjct: 125261 ttctgagtcctggtgccttt 125242
>emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in linkage group 4, complete sequence Length = 201932 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 560 tattcctaaaaatacctttcagat 583 |||||| ||||||||||||||||| Sbjct: 119894 tattcccaaaaatacctttcagat 119871
>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13, complete sequence Length = 220733 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 tcagatgctattcctaaaaa 571 |||||||||||||||||||| Sbjct: 156988 tcagatgctattcctaaaaa 156969
>emb|BX255967.4| Zebrafish DNA sequence from clone CH211-191G22 in linkage group 7, complete sequence Length = 146969 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 tcagatgctattcctaaaaa 571 |||||||||||||||||||| Sbjct: 17468 tcagatgctattcctaaaaa 17449
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 557 tgctattcctaaaaatacctttca 580 ||||||||| |||||||||||||| Sbjct: 2294012 tgctattccaaaaaatacctttca 2294035 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,377,957 Number of Sequences: 3902068 Number of extensions: 6377957 Number of successful extensions: 120446 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120176 Number of HSP's gapped (non-prelim): 270 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)