ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30a19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced pro... 507 e-140
2gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complet... 44 0.44
3ref|XM_527031.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 6.9
4ref|XM_527030.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 6.9
5ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 6.9
6ref|XM_530846.1| PREDICTED: Pan troglodytes LOC462126 (LOC462126... 40 6.9
7ref|XM_517982.1| PREDICTED: Pan troglodytes similar to protocadh... 40 6.9
8ref|NM_053941.1| Rattus norvegicus protocadherin alpha 3 (Pcdha3... 40 6.9
9gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 40 6.9
10gb|BC080863.1| Mus musculus protocadherin alpha 7, mRNA (cDNA cl... 40 6.9
11gb|BC082326.1| Mus musculus protocadherin alpha 1, mRNA (cDNA cl... 40 6.9
12gb|BC061406.1| Xenopus tropicalis mitochondrial outer membrane p... 40 6.9
13ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 40 6.9
14ref|NM_009960.1| Mus musculus protocadherin alpha 11 (Pcdha11), ... 40 6.9
15ref|NM_007766.1| Mus musculus protocadherin alpha 4 (Pcdha4), mRNA 40 6.9
16ref|XM_453827.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D17336g ... 40 6.9
17ref|NM_031856.1| Homo sapiens protocadherin alpha 8 (PCDHA8), tr... 40 6.9
18ref|NM_031852.1| Homo sapiens protocadherin alpha 7 (PCDHA7), tr... 40 6.9
19ref|NM_031497.1| Homo sapiens protocadherin alpha 3 (PCDHA3), tr... 40 6.9
20ref|NM_031496.1| Homo sapiens protocadherin alpha 2 (PCDHA2), tr... 40 6.9
21ref|NM_031495.1| Homo sapiens protocadherin alpha 2 (PCDHA2), tr... 40 6.9
22ref|NM_031861.1| Homo sapiens protocadherin alpha 11 (PCDHA11), ... 40 6.9
23ref|NM_031860.1| Homo sapiens protocadherin alpha 10 (PCDHA10), ... 40 6.9
24ref|NM_031859.1| Homo sapiens protocadherin alpha 10 (PCDHA10), ... 40 6.9
25ref|NM_018905.2| Homo sapiens protocadherin alpha 2 (PCDHA2), tr... 40 6.9
26ref|NM_018906.2| Homo sapiens protocadherin alpha 3 (PCDHA3), tr... 40 6.9
27ref|NM_018910.2| Homo sapiens protocadherin alpha 7 (PCDHA7), tr... 40 6.9
28ref|NM_018911.2| Homo sapiens protocadherin alpha 8 (PCDHA8), tr... 40 6.9
29ref|NM_018901.2| Homo sapiens protocadherin alpha 10 (PCDHA10), ... 40 6.9
30ref|NM_018902.3| Homo sapiens protocadherin alpha 11 (PCDHA11), ... 40 6.9
31gb|BC069064.1| Homo sapiens protocadherin alpha 3, mRNA (cDNA cl... 40 6.9
32ref|XR_004408.1| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
33ref|XM_908963.2| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
34ref|XM_908935.2| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
35ref|XM_991191.1| PREDICTED: Mus musculus protocadherin alpha 7 (... 40 6.9
36ref|XM_908840.2| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
37ref|XM_908824.2| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
38ref|XM_908786.2| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
39ref|XM_991056.1| PREDICTED: Mus musculus protocadherin alpha 6 (... 40 6.9
40ref|XM_908751.2| PREDICTED: Mus musculus similar to protocadheri... 40 6.9
41gb|BC050257.1| Xenopus laevis hypothetical protein MGC53422, mRN... 40 6.9
42gb|BC060211.1| Mus musculus protocadherin alpha 4, mRNA (cDNA cl... 40 6.9
43gb|BC054813.1| Mus musculus protocadherin alpha 6, mRNA (cDNA cl... 40 6.9
44gb|BC104804.1| Homo sapiens protocadherin alpha 9, transcript va... 40 6.9
45gb|BC104802.1| Homo sapiens protocadherin alpha 9, transcript va... 40 6.9
46gb|BC036674.2| Homo sapiens protocadherin alpha 6, transcript va... 40 6.9
47gb|BC003126.1| Homo sapiens protocadherin alpha 2, transcript va... 40 6.9
48emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.9
49gb|BC042887.1| Homo sapiens protocadherin alpha 6, mRNA (cDNA cl... 40 6.9
50gb|BC043441.2| Homo sapiens protocadherin alpha 6, mRNA (cDNA cl... 40 6.9
51gb|AF464178.1| Mus musculus protocadherin gene, exon alpha 4 and... 40 6.9
52gb|AF464180.1| Mus musculus protocadherin mRNA, complete cds 40 6.9
53gb|BC030897.1| Mus musculus, protocadherin alpha 6, clone IMAGE:... 40 6.9
54gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete s... 40 6.9
55ref|NM_031849.1| Homo sapiens protocadherin alpha 6 (PCDHA6), tr... 40 6.9
56ref|NM_018909.2| Homo sapiens protocadherin alpha 6 (PCDHA6), tr... 40 6.9
57ref|NM_031848.1| Homo sapiens protocadherin alpha 6 (PCDHA6), tr... 40 6.9
58dbj|AK141960.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 6.9
59dbj|AK139436.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 6.9
60dbj|AK139318.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 6.9
61dbj|AK149282.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 6.9
62ref|NM_007767.1| Mus musculus protocadherin alpha 6 (Pcdha6), mRNA 40 6.9
63ref|NM_054072.1| Mus musculus protocadherin alpha 1 (Pcdha1), mRNA 40 6.9
64ref|NM_009957.1| Mus musculus protocadherin alpha 7 (Pcdha7), mRNA 40 6.9
65ref|NM_009959.1| Mus musculus protocadherin alpha 5 (Pcdha5), mRNA 40 6.9
66ref|NM_009961.1| Mus musculus protocadherin alpha 10 (Pcdha10), ... 40 6.9
67ref|NM_198117.1| Mus musculus protocadherin alpha 2 (Pcdha2), mRNA 40 6.9
68ref|NM_138662.1| Mus musculus protocadherin alpha 3 (Pcdha3), mRNA 40 6.9
69ref|NM_138663.2| Mus musculus protocadherin alpha 12 (Pcdha12), ... 40 6.9
70dbj|AK048980.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 6.9
71gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone ... 40 6.9
72dbj|AB176653.1| Macaca fuscata CNRv09 mRNA for Protocadherin alp... 40 6.9
73dbj|AB176651.1| Macaca fuscata CNRv07 mRNA for Protocadherin alp... 40 6.9
74dbj|AB176649.1| Macaca fuscata CNRv05 mRNA for Protocadherin alp... 40 6.9
75dbj|AB176647.1| Macaca fuscata CNRv03 mRNA for Protocadherin alp... 40 6.9
76dbj|AB176646.1| Macaca fuscata CNRv02 mRNA for Protocadherin alp... 40 6.9
77dbj|AK043705.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 6.9
78gb|AY013765.1| Mus musculus protocadherin alpha 7 mRNA, complete... 40 6.9
79gb|AY013764.1| Mus musculus protocadherin alpha 6 mRNA, complete... 40 6.9
80gb|AY013763.1| Mus musculus protocadherin alpha 5 mRNA, complete... 40 6.9
81gb|AY013762.1| Mus musculus protocadherin alpha 4 mRNA, complete... 40 6.9
82gb|AY013761.1| Mus musculus protocadherin alpha 3 mRNA, complete... 40 6.9
83gb|AY013760.1| Mus musculus protocadherin alpha 2 mRNA, complete... 40 6.9
84gb|AY013759.1| Mus musculus protocadherin alpha 12 mRNA, complet... 40 6.9
85gb|AY013758.1| Mus musculus protocadherin alpha 11 mRNA, complet... 40 6.9
86gb|AY013757.1| Mus musculus protocadherin alpha 10 mRNA, complet... 40 6.9
87gb|AY013756.1| Mus musculus protocadherin alpha 1 mRNA, complete... 40 6.9
88ref|NM_199504.1| Rattus norvegicus protocadherin alpha 2 (Pcdha2... 40 6.9
89ref|NM_199506.1| Rattus norvegicus protocadherin alpha 6 (Pcdha6... 40 6.9
90gb|AY573980.1| Rattus norvegicus protocadherin alpha 6 (Pcdha6) ... 40 6.9
91gb|AY573977.1| Rattus norvegicus protocadherin alpha 3 (Pcdha3) ... 40 6.9
92gb|AY573976.1| Rattus norvegicus protocadherin alpha 2 (Pcdha2) ... 40 6.9
93gb|AY573972.1| Rattus norvegicus protocadherin alpha 10 (Pcdha10... 40 6.9
94ref|NM_053939.1| Rattus norvegicus protocadherin alpha 10 (Pcdha... 40 6.9
95ref|NM_203794.1| Xenopus tropicalis mitochondrial outer membrane... 40 6.9
96gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complet... 40 6.9
97gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, com... 40 6.9
98ref|NM_014005.3| Homo sapiens protocadherin alpha 9 (PCDHA9), tr... 40 6.9
99gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Ca... 40 6.9
100ref|NM_031857.1| Homo sapiens protocadherin alpha 9 (PCDHA9), tr... 40 6.9
101gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P1... 40 6.9
102gb|AF169694.1|AF169694 Homo sapiens protocadherin alpha 6 altern... 40 6.9
103gb|AF169689.1|AF169689 Homo sapiens protocadherin alpha 10 alter... 40 6.9
104gb|AC008468.6|AC008468 Homo sapiens chromosome 5 clone CTC-365B8... 40 6.9
105dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related... 40 6.9
106dbj|AB113393.1| Rattus norvegicus rCNRv10 mRNA for cadherin-rela... 40 6.9
107dbj|AB113389.1| Rattus norvegicus rCNRv06 mRNA for cadherin-rela... 40 6.9
108dbj|AB113386.1| Rattus norvegicus rCNRv03 mRNA for cadherin-rela... 40 6.9
109dbj|AB113385.1| Rattus norvegicus rCNRv02 mRNA for cadherin-rela... 40 6.9
110emb|AL953855.9| Zebrafish DNA sequence from clone CH211-239F4 in... 40 6.9
111dbj|AB002343.1| Homo sapiens mRNA for KIAA0345 gene, partial cds 40 6.9
112dbj|AB114630.1| Mus musculus CNR gene for cadherin-related neuro... 40 6.9
113dbj|AK129120.1| Mus musculus mRNA for mKIAA0345 protein 40 6.9
114emb|Z65300.1|HS30F1R H.sapiens CpG island DNA genomic Mse1 fragm... 40 6.9
115emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.9
116gb|AF152317.1|AF152317 Homo sapiens protocadherin alpha 9 (PCDH-... 40 6.9
117gb|AF152316.1|AF152316 Homo sapiens protocadherin alpha 8 (PCDH-... 40 6.9
118gb|AF152315.1|AF152315 Homo sapiens protocadherin alpha 7 (PCDH-... 40 6.9
119gb|AF152314.1|AF152314 Homo sapiens protocadherin alpha 6 (PCDH-... 40 6.9
120gb|AF152311.1|AF152311 Homo sapiens protocadherin alpha 3 (PCDH-... 40 6.9
121gb|AF152310.1|AF152310 Homo sapiens protocadherin alpha 2 (PCDH-... 40 6.9
122gb|AF152307.1|AF152307 Homo sapiens protocadherin alpha 11 (PCDH... 40 6.9
123gb|AF152306.1|AF152306 Homo sapiens protocadherin alpha 10 (PCDH... 40 6.9
124gb|AF152487.1|AF152487 Homo sapiens protocadherin alpha 9 short ... 40 6.9
125gb|AF152486.1|AF152486 Homo sapiens protocadherin alpha 8 short ... 40 6.9
126gb|AF152485.1|AF152485 Homo sapiens protocadherin alpha 7 short ... 40 6.9
127gb|AF152484.1|AF152484 Homo sapiens protocadherin alpha 6 short ... 40 6.9
128gb|AF152481.1|AF152481 Homo sapiens protocadherin alpha 3 short ... 40 6.9
129gb|AF152480.1|AF152480 Homo sapiens protocadherin alpha 2 short ... 40 6.9
130gb|AF152476.1|AF152476 Homo sapiens protocadherin alpha 11 short... 40 6.9
131gb|AF152475.1|AF152475 Homo sapiens protocadherin alpha 10 short... 40 6.9
132gb|AF134491.1|AF134491 Kluyveromyces lactis acetyl-CoA synthetas... 40 6.9
133emb|CR762023.2| Xenopus tropicalis finished cDNA, clone TEgg054b02 40 6.9
134dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 6.9
135gb|BC079625.1| Mus musculus cDNA clone IMAGE:30536554, containin... 40 6.9
136dbj|AP005327.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9
137emb|AJ007610.1|HSAJ7610 Homo sapiens mRNA for protocadherin alph... 40 6.9
138emb|AJ007609.1|HSAJ7609 Homo sapiens mRNA for protocadherin alph... 40 6.9
139dbj|D86917.1| Mus musculus mRNA for CNR2, complete cds 40 6.9
140dbj|D86916.1| Mus musculus mRNA for CNR1, complete cds 40 6.9
141dbj|AB008182.1| Mus musculus CNR7 mRNA for Cadherin-related neur... 40 6.9
142dbj|AB008181.1| Mus musculus CNR6 mRNA for Cadherin-related neur... 40 6.9
143dbj|AB008180.1| Mus musculus CNR5 mRNA for Cadherin-related neur... 40 6.9
144dbj|AB008179.1| Mus musculus CNR4 mRNA for Cadherin-related neur... 40 6.9
145dbj|AB008178.1| Mus musculus CNR3 mRNA for Cadherin-related neur... 40 6.9
146dbj|AP005118.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9 
>emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced protein
          Length = 2897

 Score =  507 bits (256), Expect = e-140
 Identities = 274/280 (97%)
 Strand = Plus / Plus

                                                                        
Query: 183  ggtacggtaacggaatagctgtaaaatgcctcatctacaatgccactggtgccactttga 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2305 ggtacggtaacggaatagctgtaaaatgcctcatctacaatgccactggtgccactttga 2364

                                                                        
Query: 243  gcttggctaagtacaacgattggcacggccatatctatgatacaccctacccatcagata 302
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2365 gcttggctaagtacaacgattggcacggccatatctatgatactccctacccatcagata 2424

                                                                        
Query: 303  ttcagaatgggcaatggggtgcattcctccacgtccacccaagtggtgctgcggttggtt 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425 ttcagaatgggcaatggggtgcattcctccacgtccacccaagtggtgctgcggttggtt 2484

                                                                        
Query: 363  cagctggtgccgttgtgtatcgtagcaagatcccctccagccccaggtcctgcgattggt 422
            |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||
Sbjct: 2485 cagctggtgccgttgtgtatcgtaccaagatcccctccagcagcaggtcctgcgattggt 2544

                                                    
Query: 423  tgttctcctggaccgtcccctacattggtgccaacggggt 462
            ||||||||||||||| |||||||||||||| |||||||||
Sbjct: 2545 tgttctcctggaccgccccctacattggtgacaacggggt 2584



 Score =  329 bits (166), Expect = 5e-87
 Identities = 179/182 (98%), Gaps = 1/182 (0%)
 Strand = Plus / Plus

                                                                        
Query: 4    gcaaagcaaatggcctcaggnagtgtttggtacccccatttcggagaagacggtgatagc 63
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 gcaaagcaaatggcctcagg-agtgtttggtacccccatttcggagaagacggtgatagc 2056

                                                                        
Query: 64   cactggtgagtataaggaacccattactcaaaaggatgttgcagactataccatgaagat 123
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2057 cactggtgagtataaggaacccattactcaaaaggatgttgcagactatgccatgaagat 2116

                                                                        
Query: 124  gatcaacgccggtggtaaggatattaacgcacaaaccttcgtcgacaatctcaaagagcg 183
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2117 gatcaacgccggtggtaaggatattaacgcactaaccttcgtcgacaatctcaaagagcg 2176

              
Query: 184  gt 185
            ||
Sbjct: 2177 gt 2178
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>gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complete sequence
          Length = 122076

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 295   atcagatattcagaatgggcaa 316
             ||||||||||||||||||||||
Sbjct: 72577 atcagatattcagaatgggcaa 72556
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>ref|XM_527031.1| PREDICTED: Pan troglodytes protocadherin alpha 9 (LOC471653), mRNA
          Length = 5640

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 2568 ctccagccccaggtcctgcg 2549



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>ref|XM_527030.1| PREDICTED: Pan troglodytes protocadherin alpha 8 (LOC471652), mRNA
          Length = 2409

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha 3 (LOC471651), mRNA
          Length = 6684

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 4383 ctccagccccaggtcctgcg 4364



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1995 ctccagccccaggtcctgcg 1976
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>ref|XM_530846.1| PREDICTED: Pan troglodytes LOC462126 (LOC462126), mRNA
          Length = 581

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 289 ctccagccccaggtcctgcg 308
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>ref|XM_517982.1| PREDICTED: Pan troglodytes similar to protocadherin alpha 7 isoform 2
            precursor; KIAA0345-like 7; ortholog to mouse CNR4
            (LOC462125), mRNA
          Length = 7283

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 4740 ctccagccccaggtcctgcg 4721



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 2454 ctccagccccaggtcctgcg 2435
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>ref|NM_053941.1| Rattus norvegicus protocadherin alpha 3 (Pcdha3), mRNA
          Length = 5226

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 156 ctccagccccaggtcctgcg 137
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>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
             sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 96969 ctccagccccaggtcctgcg 96988



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 90736 ctccagccccaggtcctgcg 90755



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 63842 ctccagccccaggtcctgcg 63861



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 57550 ctccagccccaggtcctgcg 57569



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 50612 ctccagccccaggtcctgcg 50631



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 43438 ctccagccccaggtcctgcg 43457



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 35888 ctccagccccaggtcctgcg 35907



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 22830 ctccagccccaggtcctgcg 22849
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>gb|BC080863.1| Mus musculus protocadherin alpha 7, mRNA (cDNA clone MGC:90581
           IMAGE:30356469), complete cds
          Length = 3882

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 287 ctccagccccaggtcctgcg 268
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>gb|BC082326.1| Mus musculus protocadherin alpha 1, mRNA (cDNA clone MGC:90628
           IMAGE:30356350), complete cds
          Length = 4942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 269 ctccagccccaggtcctgcg 250
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>gb|BC061406.1| Xenopus tropicalis mitochondrial outer membrane protein TOM40, mRNA
           (cDNA clone MGC:75995 IMAGE:5384501), complete cds
          Length = 1911

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 agcaagatcccctccagccccagg 409
           |||| |||||||||||||||||||
Sbjct: 77  agcaggatcccctccagccccagg 100
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>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 135141 ctccagccccaggtcctgcg 135122



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 122083 ctccagccccaggtcctgcg 122064



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 114533 ctccagccccaggtcctgcg 114514



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 107359 ctccagccccaggtcctgcg 107340



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 100421 ctccagccccaggtcctgcg 100402



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 94129 ctccagccccaggtcctgcg 94110



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 67235 ctccagccccaggtcctgcg 67216



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 61002 ctccagccccaggtcctgcg 60983
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>ref|NM_009960.1| Mus musculus protocadherin alpha 11 (Pcdha11), mRNA
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>ref|NM_007766.1| Mus musculus protocadherin alpha 4 (Pcdha4), mRNA
          Length = 5323

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 242 ctccagccccaggtcctgcg 223
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>ref|XM_453827.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D17336g predicted mRNA
          Length = 2055

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 caaaccttcgtcgacaatct 174
           ||||||||||||||||||||
Sbjct: 666 caaaccttcgtcgacaatct 647
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>ref|NM_031856.1| Homo sapiens protocadherin alpha 8 (PCDHA8), transcript variant 2,
           mRNA
          Length = 2445

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_031852.1| Homo sapiens protocadherin alpha 7 (PCDHA7), transcript variant 2,
           mRNA
          Length = 2370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_031497.1| Homo sapiens protocadherin alpha 3 (PCDHA3), transcript variant 2,
           mRNA
          Length = 2475

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_031496.1| Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 3,
           mRNA
          Length = 3070

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 271 ctccagccccaggtcctgcg 252
to top
>ref|NM_031495.1| Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 2,
           mRNA
          Length = 2619

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 271 ctccagccccaggtcctgcg 252
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>ref|NM_031861.1| Homo sapiens protocadherin alpha 11 (PCDHA11), transcript variant 2,
            mRNA
          Length = 3291

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1023 ctccagccccaggtcctgcg 1004
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>ref|NM_031860.1| Homo sapiens protocadherin alpha 10 (PCDHA10), transcript variant
           3, mRNA
          Length = 4465

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
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>ref|NM_031859.1| Homo sapiens protocadherin alpha 10 (PCDHA10), transcript variant
           2, mRNA
          Length = 2535

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
to top
>ref|NM_018905.2| Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 1,
           mRNA
          Length = 5360

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 271 ctccagccccaggtcctgcg 252
to top
>ref|NM_018906.2| Homo sapiens protocadherin alpha 3 (PCDHA3), transcript variant 1,
           mRNA
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_018910.2| Homo sapiens protocadherin alpha 7 (PCDHA7), transcript variant 1,
           mRNA
          Length = 5221

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_018911.2| Homo sapiens protocadherin alpha 8 (PCDHA8), transcript variant 1,
           mRNA
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_018901.2| Homo sapiens protocadherin alpha 10 (PCDHA10), transcript variant
           1, mRNA
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
to top
>ref|NM_018902.3| Homo sapiens protocadherin alpha 11 (PCDHA11), transcript variant 1,
            mRNA
          Length = 6115

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1023 ctccagccccaggtcctgcg 1004
to top
>gb|BC069064.1| Homo sapiens protocadherin alpha 3, mRNA (cDNA clone MGC:95338
           IMAGE:7216877), complete cds
          Length = 2475

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|XR_004408.1| PREDICTED: Mus musculus similar to protocadherin alpha 11
           (LOC634268), mRNA
          Length = 905

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 315 ctccagccccaggtcctgcg 296
to top
>ref|XM_908963.2| PREDICTED: Mus musculus similar to protocadherin alpha 12
           (LOC634282), mRNA
          Length = 2847

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>ref|XM_908935.2| PREDICTED: Mus musculus similar to protocadherin alpha 10
           (LOC634256), mRNA
          Length = 2587

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 319 ctccagccccaggtcctgcg 300
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>ref|XM_991191.1| PREDICTED: Mus musculus protocadherin alpha 7 (Pcdha7), mRNA
          Length = 2618

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 287 ctccagccccaggtcctgcg 268
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>ref|XM_908840.2| PREDICTED: Mus musculus similar to protocadherin alpha 6
           (LOC634185), mRNA
          Length = 2700

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 330 ctccagccccaggtcctgcg 311
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>ref|XM_908824.2| PREDICTED: Mus musculus similar to protocadherin alpha 5
           (LOC634174), mRNA
          Length = 2555

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|XM_908786.2| PREDICTED: Mus musculus similar to protocadherin alpha 3
           (LOC634146), mRNA
          Length = 2510

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 275 ctccagccccaggtcctgcg 256
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>ref|XM_991056.1| PREDICTED: Mus musculus protocadherin alpha 6 (Pcdha6), mRNA
          Length = 2611

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 349 ctccagccccaggtcctgcg 330
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>ref|XM_908751.2| PREDICTED: Mus musculus similar to protocadherin alpha 1
           (LOC634119), mRNA
          Length = 2564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 284 ctccagccccaggtcctgcg 265
to top
>gb|BC050257.1| Xenopus laevis hypothetical protein MGC53422, mRNA (cDNA clone
           MGC:53422 IMAGE:5571768), complete cds
          Length = 2459

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 agcaagatcccctccagccccagg 409
           |||| |||||||||||||||||||
Sbjct: 55  agcaggatcccctccagccccagg 78
to top
>gb|BC060211.1| Mus musculus protocadherin alpha 4, mRNA (cDNA clone MGC:64735
           IMAGE:6838078), complete cds
          Length = 4166

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 256 ctccagccccaggtcctgcg 237
to top
>gb|BC054813.1| Mus musculus protocadherin alpha 6, mRNA (cDNA clone
           IMAGE:6841317), partial cds
          Length = 4337

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 271 ctccagccccaggtcctgcg 252
to top
>gb|BC104804.1| Homo sapiens protocadherin alpha 9, transcript variant 1, mRNA
           (cDNA clone MGC:132464 IMAGE:8143807), complete cds
          Length = 3023

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 258 ctccagccccaggtcctgcg 239
to top
>gb|BC104802.1| Homo sapiens protocadherin alpha 9, transcript variant 1, mRNA
           (cDNA clone MGC:132462 IMAGE:8143805), complete cds
          Length = 3023

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 258 ctccagccccaggtcctgcg 239
to top
>gb|BC036674.2| Homo sapiens protocadherin alpha 6, transcript variant 1, mRNA
           (cDNA clone MGC:33675 IMAGE:5263226), complete cds
          Length = 4666

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 279 ctccagccccaggtcctgcg 260
to top
>gb|BC003126.1| Homo sapiens protocadherin alpha 2, transcript variant 3, mRNA
           (cDNA clone MGC:3223 IMAGE:3503666), complete cds
          Length = 3070

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 271 ctccagccccaggtcctgcg 252
to top
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1715506

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     caaaccttcgtcgacaatct 174
               ||||||||||||||||||||
Sbjct: 1475415 caaaccttcgtcgacaatct 1475434
to top
>gb|BC042887.1| Homo sapiens protocadherin alpha 6, mRNA (cDNA clone IMAGE:4822690)
          Length = 1748

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1313 ctccagccccaggtcctgcg 1332
to top
>gb|BC043441.2| Homo sapiens protocadherin alpha 6, mRNA (cDNA clone IMAGE:5297539)
          Length = 3092

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1861 ctccagccccaggtcctgcg 1880



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1101 ctccagccccaggtcctgcg 1120
to top
>gb|AF464178.1| Mus musculus protocadherin gene, exon alpha 4 and partial cds
          Length = 3391

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 657 ctccagccccaggtcctgcg 638
to top
>gb|AF464180.1| Mus musculus protocadherin mRNA, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 190 ctccagccccaggtcctgcg 171
to top
>gb|BC030897.1| Mus musculus, protocadherin alpha 6, clone IMAGE:4502027, mRNA
          Length = 2891

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 278 ctccagccccaggtcctgcg 259
to top
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence
          Length = 125707

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ataccatgaagatgatcaac 130
             ||||||||||||||||||||
Sbjct: 94822 ataccatgaagatgatcaac 94803
to top
>ref|NM_031849.1| Homo sapiens protocadherin alpha 6 (PCDHA6), transcript variant 3,
           mRNA
          Length = 4495

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 192 ctccagccccaggtcctgcg 173
to top
>ref|NM_018909.2| Homo sapiens protocadherin alpha 6 (PCDHA6), transcript variant 1,
           mRNA
          Length = 5287

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 192 ctccagccccaggtcctgcg 173
to top
>ref|NM_031848.1| Homo sapiens protocadherin alpha 6 (PCDHA6), transcript variant 2,
           mRNA
          Length = 2439

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 192 ctccagccccaggtcctgcg 173
to top
>dbj|AK141960.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130075J08 product:protocadherin
           alpha 11, full insert sequence
          Length = 3324

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 312 ctccagccccaggtcctgcg 293
to top
>dbj|AK139436.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830082M15 product:protocadherin
           alpha 11, full insert sequence
          Length = 4040

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 311 ctccagccccaggtcctgcg 292
to top
>dbj|AK139318.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830007O22 product:protocadherin alpha 11,
            full insert sequence
          Length = 4969

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 2816 ctccagccccaggtcctgcg 2835



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 287 ctccagccccaggtcctgcg 306
to top
>dbj|AK149282.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930010F15 product:protocadherin alpha 4, full
           insert sequence
          Length = 2876

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 284 ctccagccccaggtcctgcg 265
to top
>ref|NM_007767.1| Mus musculus protocadherin alpha 6 (Pcdha6), mRNA
          Length = 5369

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 291 ctccagccccaggtcctgcg 272
to top
>ref|NM_054072.1| Mus musculus protocadherin alpha 1 (Pcdha1), mRNA
          Length = 5248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 168 ctccagccccaggtcctgcg 149
to top
>ref|NM_009957.1| Mus musculus protocadherin alpha 7 (Pcdha7), mRNA
          Length = 5215

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_009959.1| Mus musculus protocadherin alpha 5 (Pcdha5), mRNA
          Length = 5206

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_009961.1| Mus musculus protocadherin alpha 10 (Pcdha10), mRNA
          Length = 5242

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 168 ctccagccccaggtcctgcg 149
to top
>ref|NM_198117.1| Mus musculus protocadherin alpha 2 (Pcdha2), mRNA
          Length = 5248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_138662.1| Mus musculus protocadherin alpha 3 (Pcdha3), mRNA
          Length = 5230

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 156 ctccagccccaggtcctgcg 137
to top
>ref|NM_138663.2| Mus musculus protocadherin alpha 12 (Pcdha12), mRNA
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>dbj|AK048980.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230087K19 product:protocadherin
           alpha 4, full insert sequence
          Length = 2894

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 273 ctccagccccaggtcctgcg 254
to top
>gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone RP23-326L17, complete sequence
          Length = 218905

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 218807 ctccagccccaggtcctgcg 218788



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 212239 ctccagccccaggtcctgcg 212220



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 205359 ctccagccccaggtcctgcg 205340



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 196329 ctccagccccaggtcctgcg 196310
to top
>dbj|AB176653.1| Macaca fuscata CNRv09 mRNA for Protocadherin alpha, complete cds
          Length = 3162

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>dbj|AB176651.1| Macaca fuscata CNRv07 mRNA for Protocadherin alpha, complete cds
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>dbj|AB176649.1| Macaca fuscata CNRv05 mRNA for Protocadherin alpha, complete cds
          Length = 3120

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
to top
>dbj|AB176647.1| Macaca fuscata CNRv03 mRNA for Protocadherin alpha, complete cds
          Length = 3168

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 171 ctccagccccaggtcctgcg 152
to top
>dbj|AB176646.1| Macaca fuscata CNRv02 mRNA for Protocadherin alpha, complete cds
          Length = 3156

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>dbj|AK043705.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830022B16 product:protocadherin
           alpha 11, full insert sequence
          Length = 2878

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 273 ctccagccccaggtcctgcg 254
to top
>gb|AY013765.1| Mus musculus protocadherin alpha 7 mRNA, complete cds
          Length = 5215

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013764.1| Mus musculus protocadherin alpha 6 mRNA, complete cds
          Length = 5242

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013763.1| Mus musculus protocadherin alpha 5 mRNA, complete cds
          Length = 5206

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013762.1| Mus musculus protocadherin alpha 4 mRNA, complete cds
          Length = 5245

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013761.1| Mus musculus protocadherin alpha 3 mRNA, complete cds
          Length = 5230

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 156 ctccagccccaggtcctgcg 137
to top
>gb|AY013760.1| Mus musculus protocadherin alpha 2 mRNA, complete cds
          Length = 5248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013759.1| Mus musculus protocadherin alpha 12 mRNA, complete cds
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013758.1| Mus musculus protocadherin alpha 11 mRNA, complete cds
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY013757.1| Mus musculus protocadherin alpha 10 mRNA, complete cds
          Length = 5242

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 168 ctccagccccaggtcctgcg 149
to top
>gb|AY013756.1| Mus musculus protocadherin alpha 1 mRNA, complete cds
          Length = 5248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 168 ctccagccccaggtcctgcg 149
to top
>ref|NM_199504.1| Rattus norvegicus protocadherin alpha 2 (Pcdha2), mRNA
          Length = 5244

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>ref|NM_199506.1| Rattus norvegicus protocadherin alpha 6 (Pcdha6), mRNA
          Length = 5289

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 216 ctccagccccaggtcctgcg 197
to top
>gb|AY573980.1| Rattus norvegicus protocadherin alpha 6 (Pcdha6) mRNA, complete cds
          Length = 5239

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY573977.1| Rattus norvegicus protocadherin alpha 3 (Pcdha3) mRNA, complete cds
          Length = 5227

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 156 ctccagccccaggtcctgcg 137
to top
>gb|AY573976.1| Rattus norvegicus protocadherin alpha 2 (Pcdha2) mRNA, complete cds
          Length = 5245

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>gb|AY573972.1| Rattus norvegicus protocadherin alpha 10 (Pcdha10) mRNA, complete
           cds
          Length = 5338

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 255 ctccagccccaggtcctgcg 236
to top
>ref|NM_053939.1| Rattus norvegicus protocadherin alpha 10 (Pcdha10), mRNA
          Length = 5337

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 255 ctccagccccaggtcctgcg 236
to top
>ref|NM_203794.1| Xenopus tropicalis mitochondrial outer membrane protein TOM40
           (MGC75995), mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 agcaagatcccctccagccccagg 409
           |||| |||||||||||||||||||
Sbjct: 77  agcaggatcccctccagccccagg 100
to top
>gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complete sequence
          Length = 210558

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ctacaatgccactggtgccacttt 240
             |||||||||||||||| |||||||
Sbjct: 18137 ctacaatgccactggtcccacttt 18114
to top
>gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, complete sequence
          Length = 199704

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 191746 ctccagccccaggtcctgcg 191727



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 185613 ctccagccccaggtcctgcg 185594



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 179445 ctccagccccaggtcctgcg 179426



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 172129 ctccagccccaggtcctgcg 172110



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 164455 ctccagccccaggtcctgcg 164436



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 157887 ctccagccccaggtcctgcg 157868



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 151007 ctccagccccaggtcctgcg 150988



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 141977 ctccagccccaggtcctgcg 141958
to top
>ref|NM_014005.3| Homo sapiens protocadherin alpha 9 (PCDHA9), transcript variant 2,
           mRNA
          Length = 6388

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 889 ctccagccccaggtcctgcg 870
to top
>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188972

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 118    gaagatgatcaacgccggtggtaa 141
              ||||||||||||||| ||||||||
Sbjct: 160083 gaagatgatcaacgctggtggtaa 160060
to top
>ref|NM_031857.1| Homo sapiens protocadherin alpha 9 (PCDHA9), transcript variant 1,
           mRNA
          Length = 5984

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 889 ctccagccccaggtcctgcg 870
to top
>gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P18, complete sequence
          Length = 218100

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 214822 ctccagccccaggtcctgcg 214841



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 207148 ctccagccccaggtcctgcg 207167



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 199832 ctccagccccaggtcctgcg 199851



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 193664 ctccagccccaggtcctgcg 193683



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 187531 ctccagccccaggtcctgcg 187550



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 162265 ctccagccccaggtcctgcg 162284



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 156730 ctccagccccaggtcctgcg 156749



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 147358 ctccagccccaggtcctgcg 147377
to top
>gb|AF169694.1|AF169694 Homo sapiens protocadherin alpha 6 alternate isoform (PCDH-alpha6)
           mRNA, complete cds
          Length = 2231

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 192 ctccagccccaggtcctgcg 173
to top
>gb|AF169689.1|AF169689 Homo sapiens protocadherin alpha 10 alternate isoform
           (PCDH-alpha10) mRNA, complete cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
to top
>gb|AC008468.6|AC008468 Homo sapiens chromosome 5 clone CTC-365B8, complete sequence
          Length = 117096

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctccagccccaggtcctgcg 416
              ||||||||||||||||||||
Sbjct: 114766 ctccagccccaggtcctgcg 114785



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 87873 ctccagccccaggtcctgcg 87892



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 81581 ctccagccccaggtcctgcg 81600



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 74648 ctccagccccaggtcctgcg 74667



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 67476 ctccagccccaggtcctgcg 67495



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 59922 ctccagccccaggtcctgcg 59941



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 46861 ctccagccccaggtcctgcg 46880
to top
>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor,
             exon cluster
          Length = 249555

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 60083 ctccagccccaggtcctgcg 60064



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 36329 ctccagccccaggtcctgcg 36310



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ctccagccccaggtcctgcg 416
             ||||||||||||||||||||
Sbjct: 15315 ctccagccccaggtcctgcg 15296



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 9151 ctccagccccaggtcctgcg 9132
to top
>dbj|AB113393.1| Rattus norvegicus rCNRv10 mRNA for cadherin-related neuronal
           receptor 10, complete cds
          Length = 5337

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 255 ctccagccccaggtcctgcg 236
to top
>dbj|AB113389.1| Rattus norvegicus rCNRv06 mRNA for cadherin-related neuronal
           receptor 6, complete cds
          Length = 5289

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 216 ctccagccccaggtcctgcg 197
to top
>dbj|AB113386.1| Rattus norvegicus rCNRv03 mRNA for cadherin-related neuronal
           receptor 3, complete cds
          Length = 5226

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 156 ctccagccccaggtcctgcg 137
to top
>dbj|AB113385.1| Rattus norvegicus rCNRv02 mRNA for cadherin-related neuronal
           receptor 2, complete cds
          Length = 5244

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
to top
>emb|AL953855.9| Zebrafish DNA sequence from clone CH211-239F4 in linkage group 1,
             complete sequence
          Length = 146080

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   tgtaaaatgcctcatctaca 221
             ||||||||||||||||||||
Sbjct: 15143 tgtaaaatgcctcatctaca 15124
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>dbj|AB002343.1| Homo sapiens mRNA for KIAA0345 gene, partial cds
          Length = 6387

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 889 ctccagccccaggtcctgcg 870
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>dbj|AB114630.1| Mus musculus CNR gene for cadherin-related neuronal receptor,
            complete cds
          Length = 10521

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 4204 ctccagccccaggtcctgcg 4185
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>dbj|AK129120.1| Mus musculus mRNA for mKIAA0345 protein
          Length = 4568

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 258 ctccagccccaggtcctgcg 239
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>emb|Z65300.1|HS30F1R H.sapiens CpG island DNA genomic Mse1 fragment, clone 30f1, reverse
           read cpg30f1.rt1a
          Length = 255

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 217 ctccagccccaggtcctgcg 198
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     ccctccagccccaggtcctg 414
               ||||||||||||||||||||
Sbjct: 3547893 ccctccagccccaggtcctg 3547912
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>gb|AF152317.1|AF152317 Homo sapiens protocadherin alpha 9 (PCDH-alpha9) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152316.1|AF152316 Homo sapiens protocadherin alpha 8 (PCDH-alpha8) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152315.1|AF152315 Homo sapiens protocadherin alpha 7 (PCDH-alpha7) mRNA, complete cds
          Length = 5221

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152314.1|AF152314 Homo sapiens protocadherin alpha 6 (PCDH-alpha6) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152311.1|AF152311 Homo sapiens protocadherin alpha 3 (PCDH-alpha3) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152310.1|AF152310 Homo sapiens protocadherin alpha 2 (PCDH-alpha2) mRNA, complete cds
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152307.1|AF152307 Homo sapiens protocadherin alpha 11 (PCDH-alpha11) mRNA, complete
           cds
          Length = 5257

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152306.1|AF152306 Homo sapiens protocadherin alpha 10 (PCDH-alpha10) mRNA, complete
           cds
          Length = 5254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
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>gb|AF152487.1|AF152487 Homo sapiens protocadherin alpha 9 short form protein (PCDH-alpha9)
           variable region sequence, complete cds
          Length = 2529

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152486.1|AF152486 Homo sapiens protocadherin alpha 8 short form protein (PCDH-alpha8)
           variable region sequence, complete cds
          Length = 2445

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152485.1|AF152485 Homo sapiens protocadherin alpha 7 short form protein (PCDH-alpha7)
           variable region sequence, complete cds
          Length = 2370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152484.1|AF152484 Homo sapiens protocadherin alpha 6 short form protein (PCDH-alpha6)
           variable region sequence, complete cds
          Length = 2412

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152481.1|AF152481 Homo sapiens protocadherin alpha 3 short form protein (PCDH-alpha3)
           variable region sequence, complete cds
          Length = 2475

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152480.1|AF152480 Homo sapiens protocadherin alpha 2 short form protein (PCDH-alpha2)
           variable region sequence, complete cds
          Length = 2513

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152476.1|AF152476 Homo sapiens protocadherin alpha 11 short form protein
           (PCDH-alpha11) variable region sequence, complete cds
          Length = 2433

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 165 ctccagccccaggtcctgcg 146
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>gb|AF152475.1|AF152475 Homo sapiens protocadherin alpha 10 short form protein
           (PCDH-alpha10) variable region sequence, complete cds
          Length = 2535

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 162 ctccagccccaggtcctgcg 143
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>gb|AF134491.1|AF134491 Kluyveromyces lactis acetyl-CoA synthetase (ACS2) gene, complete cds
          Length = 3543

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  caaaccttcgtcgacaatct 174
            ||||||||||||||||||||
Sbjct: 1482 caaaccttcgtcgacaatct 1463
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>emb|CR762023.2| Xenopus tropicalis finished cDNA, clone TEgg054b02
          Length = 1215

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 agcaagatcccctccagccccagg 409
           |||| |||||||||||||||||||
Sbjct: 52  agcaggatcccctccagccccagg 75
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>dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:RP11-931H21, complete
             sequence
          Length = 215253

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ctggtgagtataaggaaccc 85
             ||||||||||||||||||||
Sbjct: 48601 ctggtgagtataaggaaccc 48620
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>gb|BC079625.1| Mus musculus cDNA clone IMAGE:30536554, containing frame-shift
           errors
          Length = 4877

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 285 ctccagccccaggtcctgcg 266
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>dbj|AP005327.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-231N16, complete
             sequence
          Length = 161982

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ctggtgagtataaggaaccc 85
             ||||||||||||||||||||
Sbjct: 48600 ctggtgagtataaggaaccc 48619
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>emb|AJ007610.1|HSAJ7610 Homo sapiens mRNA for protocadherin alpha 9 (PCDHA9 gene)
          Length = 4020

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1200 ctccagccccaggtcctgcg 1181
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>emb|AJ007609.1|HSAJ7609 Homo sapiens mRNA for protocadherin alpha 11 (PCDHA11 gene)
          Length = 3856

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ctccagccccaggtcctgcg 416
            ||||||||||||||||||||
Sbjct: 1022 ctccagccccaggtcctgcg 1003
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>dbj|D86917.1| Mus musculus mRNA for CNR2, complete cds
          Length = 5369

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 291 ctccagccccaggtcctgcg 272
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>dbj|D86916.1| Mus musculus mRNA for CNR1, complete cds
          Length = 5323

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 242 ctccagccccaggtcctgcg 223
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>dbj|AB008182.1| Mus musculus CNR7 mRNA for Cadherin-related neural recepter 7,
           partial cds
          Length = 2746

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 58  ctccagccccaggtcctgcg 39
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>dbj|AB008181.1| Mus musculus CNR6 mRNA for Cadherin-related neural recepter 6,
           partial cds
          Length = 2698

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 58  ctccagccccaggtcctgcg 39
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>dbj|AB008180.1| Mus musculus CNR5 mRNA for Cadherin-related neural recepter 5,
           partial cds
          Length = 2746

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 58  ctccagccccaggtcctgcg 39
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>dbj|AB008179.1| Mus musculus CNR4 mRNA for Cadherin-related neural recepter 4,
           partial cds
          Length = 2707

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 58  ctccagccccaggtcctgcg 39
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>dbj|AB008178.1| Mus musculus CNR3 mRNA for Cadherin-related neural recepter 3,
           partial cds
          Length = 2731

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ctccagccccaggtcctgcg 416
           ||||||||||||||||||||
Sbjct: 58  ctccagccccaggtcctgcg 39
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>dbj|AP005118.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-22C7, complete
              sequences
          Length = 166857

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     ctggtgagtataaggaaccc 85
              ||||||||||||||||||||
Sbjct: 165368 ctggtgagtataaggaaccc 165387


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,171,410
Number of Sequences: 3902068
Number of extensions: 3171410
Number of successful extensions: 55583
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55321
Number of HSP's gapped (non-prelim): 261
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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