ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KBTB3_HUMAN (Q8NAB2) Kelch repeat and BTB domain-containing prot... 32 0.95
2CD180_HUMAN (Q99467) CD180 antigen precursor (Lymphocyte antigen... 30 4.7
3TASM_POVJC (P03083) Small T antigen 29 8.1

>KBTB3_HUMAN (Q8NAB2) Kelch repeat and BTB domain-containing protein 3 (BTB and|
           kelch domain-containing protein 3)
          Length = 608

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
 Frame = -1

Query: 203 RCSKYPSTYIFQFFHEYEDIEGCICPTHLDMTLVS-LYNIQSPHTKAI-----------T 60
           +C +    +I + +H+  D   C CP   D  LVS +   ++ HT  +           T
Sbjct: 349 KCCRTVRLHIAESYHDATDQTWCYCPVKNDFFLVSTMKTPRTMHTSVMALDRLFVIGGKT 408

Query: 59  NSSRSFSILLDVEALPKIS 3
             SR    LLDVE+   +S
Sbjct: 409 RGSRDIKSLLDVESYNPLS 427



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>CD180_HUMAN (Q99467) CD180 antigen precursor (Lymphocyte antigen 64)|
           (Radioprotective 105 kDa protein)
          Length = 661

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +2

Query: 68  LWCEDFECYRER--LGSYLNELGKYNLRYLHIHEKIGKYMLRDTCCTFPYLQHLNLEWS- 238
           LW   FE   +     + L  L + ++  L++ E     +   T   F  LQ L+L  + 
Sbjct: 250 LWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATH 309

Query: 239 IKRVPKGMASLTNILKLQIEVLQFDEEDLHVLMCMPSLAYLQLK 370
           +K +P GM  L  + KL + V  FD+         PSL +L ++
Sbjct: 310 LKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR 353



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>TASM_POVJC (P03083) Small T antigen|
          Length = 172

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 17  ELRHLTKLRKISMSLLWLWCEDFECYRERLGSYLNELGKYNLRYLHIHEKI 169
           +LRH  +    S  L+W+ C  F+C+R+  G  L +        LH  EK+
Sbjct: 117 KLRHRNRKFLRSSPLVWIDCYCFDCFRQWFGCDLTQ------EALHCWEKV 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,295,112
Number of Sequences: 219361
Number of extensions: 1495761
Number of successful extensions: 3605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3605
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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