ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29p19 |
|---|---|
| Clone Library Name | barley_pub |
>NUIM_SOLTU (P80269) NADH-ubiquinone oxidoreductase 23 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD) Length = 229 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = +2 Query: 236 WNAVFERSINTLFLTEMXRGLMLTL 310 WN+VFERSINTLFLTEM RGLMLTL Sbjct: 67 WNSVFERSINTLFLTEMVRGLMLTL 91
>NUIM_ARATH (Q42599) NADH-ubiquinone oxidoreductase 23 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD) Length = 222 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/25 (88%), Positives = 22/25 (88%) Frame = +2 Query: 236 WNAVFERSINTLFLTEMXRGLMLTL 310 WN VFERSINTLFLTEM RGL LTL Sbjct: 60 WNTVFERSINTLFLTEMVRGLSLTL 84
>NUIM_TOBAC (O24143) NADH-ubiquinone oxidoreductase 23 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD) Length = 230 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = +2 Query: 236 WNAVFERSINTLFLTEMXRGLMLTL 310 WN+VFE+ INTLFLTEM RGLMLTL Sbjct: 68 WNSVFEQQINTLFLTEMVRGLMLTL 92
>DPY5_CAEEL (P91285) Cuticle collagen dpy-5 (Protein dumpy-5)| Length = 284 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 127 GRAEMRRLPGAEGQRCLPG*ERRHGRV--VGDEETVGSDRKWG 5 G+ + LPG G+R PG + GRV +GD+ T G D + G Sbjct: 152 GQEGFQGLPGDAGKRGTPGKDGEPGRVGDIGDQGTPGQDGQPG 194
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = -3 Query: 257 SFRTQH-------SNLSQVLLRXVLSPHPL*TSWAPPRPCRSGGG 144 SFR QH + Q ++ VL PH L PP P GGG Sbjct: 53 SFREQHLAQLQQLQQMHQKQMQSVLQPHHLPPPPLPPPPVMPGGG 97
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -3 Query: 209 VLSPHPL*TSWAPPRPCRSGGGPASPS 129 VL P PL A PRP + GGG +P+ Sbjct: 434 VLPPSPLPAPVASPRPFQPGGGAPTPA 460
>TF3C1_MOUSE (Q8K284) General transcription factor 3C polypeptide 1| (Transcription factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit) Length = 2101 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 178 GHPRVHVGPEVALH--RRRGRAEMRRLPGAE 92 GHP H G + ALH R+ G+ E R PGA+ Sbjct: 813 GHPAGHTGEQPALHSERKTGKQESSR-PGAQ 842
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/31 (45%), Positives = 14/31 (45%) Frame = -3 Query: 200 PHPL*TSWAPPRPCRSGGGPASPSRTGRDAP 108 PHP PPRP S GGP P AP Sbjct: 193 PHP---GMMPPRPGASAGGPPRPQAPRPQAP 220
>YL17_CAEEL (Q11102) Hypothetical protein C02F12.7| Length = 1130 Score = 27.7 bits (60), Expect = 7.7 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 11/46 (23%) Frame = -3 Query: 209 VLSPHPL*TSWAPPRP-----CRSG------GGPASPSRTGRDAPS 105 V HP +W P P C SG GGPA PS R APS Sbjct: 22 VRQSHPEIAAWPAPPPAHQLGCLSGNVRTPVGGPAPPSPVLRRAPS 67
>MYCN_SERCA (P26014) N-myc proto-oncogene protein| Length = 427 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 185 TSWAPPRPCRSGGGPASPSRTGRDAP 108 T APP P + G P P+R+GR P Sbjct: 150 TPAAPPPPPGTAGSPPVPARSGRAVP 175
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 27.7 bits (60), Expect = 7.7 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = -3 Query: 257 SFRTQH-------SNLSQVLLRXVLSPHPL*TSWAPPRPCRSGGG 144 SFR QH + Q ++ VL PH L PP P GGG Sbjct: 52 SFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGG 96
>TMC6_MOUSE (Q7TN60) Transmembrane channel-like protein 6| Length = 810 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 100 QADGASRPVRDGDAGPPPDLHGRGGAQE 183 + +G SRP R DA PP H GG Q+ Sbjct: 775 EEEGRSRPGRTQDATEPPAWHEDGGDQK 802
>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1846 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = -3 Query: 173 PPRPCRSGGGPASPSRTGRDAPSA 102 P RP RS G P +PSR G AP A Sbjct: 285 PLRPARSPG-PTAPSRVGAPAPGA 307
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -1 Query: 112 RRLPGAEGQRCLPG*ERRHGRVVGDE-ETVGSDRKWG 5 + +P A+G C PG RHG V E ET + +WG Sbjct: 524 QHVPPADGTDCGPGMHCRHGLCVNKETETRPVNGEWG 560 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,128,151 Number of Sequences: 219361 Number of extensions: 521578 Number of successful extensions: 1812 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1805 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
