| Clone Name | bags29o17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197929.1| Oryza sativa (japonica cultivar-group) putative ankyrin protein (OSJNBa0056G17.5), mRNA Length = 993 Score = 442 bits (223), Expect = e-121 Identities = 433/503 (86%) Strand = Plus / Plus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtcgctttgcgactcggac 76 ||||||||||| ||| ||||||| ||| |||||||| |||||| || ||||| | || Sbjct: 94 ctgcacaaggccgcgcggtcgggagatttggcggcggcggagtctctgtgcgaggccaac 153 Query: 77 cctctcgccctcaactctagagaccgcctctcccgcaccccactccatctggcggcatgg 136 |||||||||||||| || ||||| |||||||| ||||||||||||||| |||| |||||| Sbjct: 154 cctctcgccctcaattccagagatcgcctctctcgcaccccactccatttggcagcatgg 213 Query: 137 gctgggcatgttgatgttgtgaaatgcctttgcaagcacaaagctgatgcgggggctgca 196 ||||| |||||||| ||||||| ||||||||||||||||||||||||| || |||||| Sbjct: 214 gctggacatgttgagcttgtgaagtgcctttgcaagcacaaagctgatgttggagctgca 273 Query: 197 gcaatggatgacaccgcggcaatccattttgcttcccagaaaggtcatttggaagtggtg 256 || |||||||||||||| || ||||||||||| || |||||||| ||| | || || || Sbjct: 274 gctatggatgacaccgctgcgatccattttgcctctcagaaaggccatgtagaggttgtc 333 Query: 257 cgtgagctgctggcatcgggggcctctgtgaaagcaaagaacaggaaaggtttcacagcg 316 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 334 cgtgagctgctggcatctggtgcctctgtgaaagcaaagaacaggaaaggcttcactgcg 393 Query: 317 ttgcactttgctgctcagaactcccacctggagcttgtgaagtatttggtgaggaggggc 376 |||||||||||| | |||||||||||||||||||||||||||||||| || | || || Sbjct: 394 ttgcactttgcttcgcagaactcccacctggagcttgtgaagtatttagtcaagaaaggt 453 Query: 377 gtggacatcacaacaaagacaaatgcagggcaaacggctctacatgttgcggagaatgat 436 | |||||| | |||||||||| | || || ||||||||||||||||| ||||| ||| Sbjct: 454 gcagacatcgccgcaaagacaaaagggggtcagacggctctacatgttgcagagaaggat 513 Query: 437 gacgtgcgtgctttcctgaaagagtgcgagcagtcactgaagaagggagtggagctacca 496 || || |||| |||||||||||| || ||||||||| |||||||||||| ||||| ||| Sbjct: 514 gatgttcgtgatttcctgaaagaatgtgagcagtcattgaagaagggaggtgagcttcca 573 Query: 497 tctgagaagaaggatgattctgt 519 || |||||||||||||||||||| Sbjct: 574 tcggagaagaaggatgattctgt 596
>dbj|AB110173.1| Oryza sativa (japonica cultivar-group) mRNA for ankyrin, complete cds, clone: 13YPB030 Length = 1035 Score = 442 bits (223), Expect = e-121 Identities = 433/503 (86%) Strand = Plus / Plus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtcgctttgcgactcggac 76 ||||||||||| ||| ||||||| ||| |||||||| |||||| || ||||| | || Sbjct: 165 ctgcacaaggccgcgcggtcgggagatttggcggcggcggagtctctgtgcgaggccaac 224 Query: 77 cctctcgccctcaactctagagaccgcctctcccgcaccccactccatctggcggcatgg 136 |||||||||||||| || ||||| |||||||| ||||||||||||||| |||| |||||| Sbjct: 225 cctctcgccctcaattccagagatcgcctctctcgcaccccactccatttggcagcatgg 284 Query: 137 gctgggcatgttgatgttgtgaaatgcctttgcaagcacaaagctgatgcgggggctgca 196 ||||| |||||||| ||||||| ||||||||||||||||||||||||| || |||||| Sbjct: 285 gctggacatgttgagcttgtgaagtgcctttgcaagcacaaagctgatgttggagctgca 344 Query: 197 gcaatggatgacaccgcggcaatccattttgcttcccagaaaggtcatttggaagtggtg 256 || |||||||||||||| || ||||||||||| || |||||||| ||| | || || || Sbjct: 345 gctatggatgacaccgctgcgatccattttgcctctcagaaaggccatgtagaggttgtc 404 Query: 257 cgtgagctgctggcatcgggggcctctgtgaaagcaaagaacaggaaaggtttcacagcg 316 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 405 cgtgagctgctggcatctggtgcctctgtgaaagcaaagaacaggaaaggcttcactgcg 464 Query: 317 ttgcactttgctgctcagaactcccacctggagcttgtgaagtatttggtgaggaggggc 376 |||||||||||| | |||||||||||||||||||||||||||||||| || | || || Sbjct: 465 ttgcactttgcttcgcagaactcccacctggagcttgtgaagtatttagtcaagaaaggt 524 Query: 377 gtggacatcacaacaaagacaaatgcagggcaaacggctctacatgttgcggagaatgat 436 | |||||| | |||||||||| | || || ||||||||||||||||| ||||| ||| Sbjct: 525 gcagacatcgccgcaaagacaaaagggggtcagacggctctacatgttgcagagaaggat 584 Query: 437 gacgtgcgtgctttcctgaaagagtgcgagcagtcactgaagaagggagtggagctacca 496 || || |||| |||||||||||| || ||||||||| |||||||||||| ||||| ||| Sbjct: 585 gatgttcgtgatttcctgaaagaatgtgagcagtcattgaagaagggaggtgagcttcca 644 Query: 497 tctgagaagaaggatgattctgt 519 || |||||||||||||||||||| Sbjct: 645 tcggagaagaaggatgattctgt 667
>dbj|AK071604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099C19, full insert sequence Length = 1026 Score = 434 bits (219), Expect = e-118 Identities = 432/503 (85%) Strand = Plus / Plus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtcgctttgcgactcggac 76 ||||||||||| ||| ||| ||| ||| |||||||| |||||| || ||||| | || Sbjct: 152 ctgcacaaggccgcgcggtggggagatttggcggcggcggagtctctgtgcgaggccaac 211 Query: 77 cctctcgccctcaactctagagaccgcctctcccgcaccccactccatctggcggcatgg 136 |||||||||||||| || ||||| |||||||| ||||||||||||||| |||| |||||| Sbjct: 212 cctctcgccctcaattccagagatcgcctctctcgcaccccactccatttggcagcatgg 271 Query: 137 gctgggcatgttgatgttgtgaaatgcctttgcaagcacaaagctgatgcgggggctgca 196 ||||| |||||||| ||||||| ||||||||||||||||||||||||| || |||||| Sbjct: 272 gctggacatgttgagcttgtgaagtgcctttgcaagcacaaagctgatgttggagctgca 331 Query: 197 gcaatggatgacaccgcggcaatccattttgcttcccagaaaggtcatttggaagtggtg 256 || |||||||||||||| || ||||||||||| || |||||||| ||| | || || || Sbjct: 332 gctatggatgacaccgctgcgatccattttgcctctcagaaaggccatgtagaggttgtc 391 Query: 257 cgtgagctgctggcatcgggggcctctgtgaaagcaaagaacaggaaaggtttcacagcg 316 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 392 cgtgagctgctggcatctggtgcctctgtgaaagcaaagaacaggaaaggcttcactgcg 451 Query: 317 ttgcactttgctgctcagaactcccacctggagcttgtgaagtatttggtgaggaggggc 376 |||||||||||| | |||||||||||||||||||||||||||||||| || | || || Sbjct: 452 ttgcactttgcttcgcagaactcccacctggagcttgtgaagtatttagtcaagaaaggt 511 Query: 377 gtggacatcacaacaaagacaaatgcagggcaaacggctctacatgttgcggagaatgat 436 | |||||| | |||||||||| | || || ||||||||||||||||| ||||| ||| Sbjct: 512 gcagacatcgccgcaaagacaaaagggggtcagacggctctacatgttgcagagaaggat 571 Query: 437 gacgtgcgtgctttcctgaaagagtgcgagcagtcactgaagaagggagtggagctacca 496 || || |||| |||||||||||| || ||||||||| |||||||||||| ||||| ||| Sbjct: 572 gatgttcgtgatttcctgaaagaatgtgagcagtcattgaagaagggaggtgagcttcca 631 Query: 497 tctgagaagaaggatgattctgt 519 || |||||||||||||||||||| Sbjct: 632 tcggagaagaaggatgattctgt 654
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 369 bits (186), Expect = 7e-99 Identities = 348/402 (86%) Strand = Plus / Plus Query: 118 actccatctggcggcatgggctgggcatgttgatgttgtgaaatgcctttgcaagcacaa 177 ||||||| |||| ||||||||||| |||||||| ||||||| ||||||||||||||||| Sbjct: 122985 actccatttggcagcatgggctggacatgttgagcttgtgaagtgcctttgcaagcacaa 123044 Query: 178 agctgatgcgggggctgcagcaatggatgacaccgcggcaatccattttgcttcccagaa 237 |||||||| || |||||||| |||||||||||||| || ||||||||||| || ||||| Sbjct: 123045 agctgatgttggagctgcagctatggatgacaccgctgcgatccattttgcctctcagaa 123104 Query: 238 aggtcatttggaagtggtgcgtgagctgctggcatcgggggcctctgtgaaagcaaagaa 297 ||| ||| | || || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 123105 aggccatgtagaggttgtccgtgagctgctggcatctggtgcctctgtgaaagcaaagaa 123164 Query: 298 caggaaaggtttcacagcgttgcactttgctgctcagaactcccacctggagcttgtgaa 357 ||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 123165 caggaaaggcttcactgcgttgcactttgcttcgcagaactcccacctggagcttgtgaa 123224 Query: 358 gtatttggtgaggaggggcgtggacatcacaacaaagacaaatgcagggcaaacggctct 417 |||||| || | || || | |||||| | |||||||||| | || || |||||||| Sbjct: 123225 gtatttagtcaagaaaggtgcagacatcgccgcaaagacaaaagggggtcagacggctct 123284 Query: 418 acatgttgcggagaatgatgacgtgcgtgctttcctgaaagagtgcgagcagtcactgaa 477 ||||||||| ||||| ||||| || |||| |||||||||||| || ||||||||| |||| Sbjct: 123285 acatgttgcagagaaggatgatgttcgtgatttcctgaaagaatgtgagcagtcattgaa 123344 Query: 478 gaagggagtggagctaccatctgagaagaaggatgattctgt 519 |||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 123345 gaagggaggtgagcttccatcggagaagaaggatgattctgt 123386 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtcgctttgcgactcggac 76 ||||||||||| ||| ||||||| ||| |||||||| |||||| || ||||| | || Sbjct: 120871 ctgcacaaggccgcgcggtcgggagatttggcggcggcggagtctctgtgcgaggccaac 120930 Query: 77 cctctcgccctcaactctagagaccgcctctcccgcacccc 117 |||||||||||||| || ||||| |||||||| |||||||| Sbjct: 120931 cctctcgccctcaattccagagatcgcctctctcgcacccc 120971
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 369 bits (186), Expect = 7e-99 Identities = 348/402 (86%) Strand = Plus / Plus Query: 118 actccatctggcggcatgggctgggcatgttgatgttgtgaaatgcctttgcaagcacaa 177 ||||||| |||| ||||||||||| |||||||| ||||||| ||||||||||||||||| Sbjct: 22668316 actccatttggcagcatgggctggacatgttgagcttgtgaagtgcctttgcaagcacaa 22668375 Query: 178 agctgatgcgggggctgcagcaatggatgacaccgcggcaatccattttgcttcccagaa 237 |||||||| || |||||||| |||||||||||||| || ||||||||||| || ||||| Sbjct: 22668376 agctgatgttggagctgcagctatggatgacaccgctgcgatccattttgcctctcagaa 22668435 Query: 238 aggtcatttggaagtggtgcgtgagctgctggcatcgggggcctctgtgaaagcaaagaa 297 ||| ||| | || || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 22668436 aggccatgtagaggttgtccgtgagctgctggcatctggtgcctctgtgaaagcaaagaa 22668495 Query: 298 caggaaaggtttcacagcgttgcactttgctgctcagaactcccacctggagcttgtgaa 357 ||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 22668496 caggaaaggcttcactgcgttgcactttgcttcgcagaactcccacctggagcttgtgaa 22668555 Query: 358 gtatttggtgaggaggggcgtggacatcacaacaaagacaaatgcagggcaaacggctct 417 |||||| || | || || | |||||| | |||||||||| | || || |||||||| Sbjct: 22668556 gtatttagtcaagaaaggtgcagacatcgccgcaaagacaaaagggggtcagacggctct 22668615 Query: 418 acatgttgcggagaatgatgacgtgcgtgctttcctgaaagagtgcgagcagtcactgaa 477 ||||||||| ||||| ||||| || |||| |||||||||||| || ||||||||| |||| Sbjct: 22668616 acatgttgcagagaaggatgatgttcgtgatttcctgaaagaatgtgagcagtcattgaa 22668675 Query: 478 gaagggagtggagctaccatctgagaagaaggatgattctgt 519 |||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 22668676 gaagggaggtgagcttccatcggagaagaaggatgattctgt 22668717 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtcgctttgcgactcggac 76 ||||||||||| ||| ||||||| ||| |||||||| |||||| || ||||| | || Sbjct: 22666202 ctgcacaaggccgcgcggtcgggagatttggcggcggcggagtctctgtgcgaggccaac 22666261 Query: 77 cctctcgccctcaactctagagaccgcctctcccgcacccc 117 |||||||||||||| || ||||| |||||||| |||||||| Sbjct: 22666262 cctctcgccctcaattccagagatcgcctctctcgcacccc 22666302 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 tcgggtgatgcggcggcggtggag 58 ||||||||| |||||||||||||| Sbjct: 5466432 tcgggtgatccggcggcggtggag 5466409
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 369 bits (186), Expect = 7e-99 Identities = 348/402 (86%) Strand = Plus / Plus Query: 118 actccatctggcggcatgggctgggcatgttgatgttgtgaaatgcctttgcaagcacaa 177 ||||||| |||| ||||||||||| |||||||| ||||||| ||||||||||||||||| Sbjct: 22680784 actccatttggcagcatgggctggacatgttgagcttgtgaagtgcctttgcaagcacaa 22680843 Query: 178 agctgatgcgggggctgcagcaatggatgacaccgcggcaatccattttgcttcccagaa 237 |||||||| || |||||||| |||||||||||||| || ||||||||||| || ||||| Sbjct: 22680844 agctgatgttggagctgcagctatggatgacaccgctgcgatccattttgcctctcagaa 22680903 Query: 238 aggtcatttggaagtggtgcgtgagctgctggcatcgggggcctctgtgaaagcaaagaa 297 ||| ||| | || || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 22680904 aggccatgtagaggttgtccgtgagctgctggcatctggtgcctctgtgaaagcaaagaa 22680963 Query: 298 caggaaaggtttcacagcgttgcactttgctgctcagaactcccacctggagcttgtgaa 357 ||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 22680964 caggaaaggcttcactgcgttgcactttgcttcgcagaactcccacctggagcttgtgaa 22681023 Query: 358 gtatttggtgaggaggggcgtggacatcacaacaaagacaaatgcagggcaaacggctct 417 |||||| || | || || | |||||| | |||||||||| | || || |||||||| Sbjct: 22681024 gtatttagtcaagaaaggtgcagacatcgccgcaaagacaaaagggggtcagacggctct 22681083 Query: 418 acatgttgcggagaatgatgacgtgcgtgctttcctgaaagagtgcgagcagtcactgaa 477 ||||||||| ||||| ||||| || |||| |||||||||||| || ||||||||| |||| Sbjct: 22681084 acatgttgcagagaaggatgatgttcgtgatttcctgaaagaatgtgagcagtcattgaa 22681143 Query: 478 gaagggagtggagctaccatctgagaagaaggatgattctgt 519 |||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 22681144 gaagggaggtgagcttccatcggagaagaaggatgattctgt 22681185 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtcgctttgcgactcggac 76 ||||||||||| ||| ||||||| ||| |||||||| |||||| || ||||| | || Sbjct: 22678670 ctgcacaaggccgcgcggtcgggagatttggcggcggcggagtctctgtgcgaggccaac 22678729 Query: 77 cctctcgccctcaactctagagaccgcctctcccgcacccc 117 |||||||||||||| || ||||| |||||||| |||||||| Sbjct: 22678730 cctctcgccctcaattccagagatcgcctctctcgcacccc 22678770 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 tcgggtgatgcggcggcggtggag 58 ||||||||| |||||||||||||| Sbjct: 5467219 tcgggtgatccggcggcggtggag 5467196
>gb|AY111430.1| Zea mays CL65354_1 mRNA sequence Length = 588 Score = 163 bits (82), Expect = 9e-37 Identities = 202/242 (83%) Strand = Plus / Minus Query: 264 tgctggcatcgggggcctctgtgaaagcaaagaacaggaaaggtttcacagcgttgcact 323 |||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||| |||||| Sbjct: 588 tgctggcatctggggcctctgtgaaagccaagaaccggaaaggcttcacggcgctgcact 529 Query: 324 ttgctgctcagaactcccacctggagcttgtgaagtatttggtgaggaggggcgtggaca 383 ||||||||||||| || |||||||| |||||||||| | |||| || || || ||| Sbjct: 528 ttgctgctcagaattctcacctggatcttgtgaagtgccttgtgaagaaaggtgttgacg 469 Query: 384 tcacaacaaagacaaatgcagggcaaacggctctacatgttgcggagaatgatgacgtgc 443 ||||| ||||||| || | || || || ||||||||||| || ||| ||||||| |||| Sbjct: 468 tcacagcaaagaccaaaggtggccagacagctctacatgtcgctgaggatgatgaagtgc 409 Query: 444 gtgctttcctgaaagagtgcgagcagtcactgaagaagggagtggagctaccatctgaga 503 |||| |||||||| ||||||||||| || |||||||||| | ||||||||||| |||| Sbjct: 408 gtgcgttcctgaaggagtgcgagcaatccttgaagaagggtgccgagctaccatcggaga 349 Query: 504 ag 505 || Sbjct: 348 ag 347
>ref|XM_865814.1| PREDICTED: Bos taurus similar to invasion inhibitory protein 45 isoform 1, transcript variant 1 (LOC614193), mRNA Length = 2971 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ctcccacctggagcttgtgaag 358 |||||||||||||||||||||| Sbjct: 2229 ctcccacctggagcttgtgaag 2250
>ref|XM_877016.1| PREDICTED: Bos taurus similar to invasion inhibitory protein 45 isoform 1, transcript variant 3 (LOC614193), mRNA Length = 2437 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ctcccacctggagcttgtgaag 358 |||||||||||||||||||||| Sbjct: 1695 ctcccacctggagcttgtgaag 1716
>ref|XM_876968.1| PREDICTED: Bos taurus similar to invasion inhibitory protein 45 isoform 1, transcript variant 2 (LOC614193), mRNA Length = 3677 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ctcccacctggagcttgtgaag 358 |||||||||||||||||||||| Sbjct: 2935 ctcccacctggagcttgtgaag 2956
>gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, complete sequence Length = 173677 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 514 ttctgtagctgagaaggctgat 535 |||||||||||||||||||||| Sbjct: 36628 ttctgtagctgagaaggctgat 36649
>gb|AC004944.1|AC004944 Homo sapiens PAC clone RP5-991O23 from 8, complete sequence Length = 133258 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 514 ttctgtagctgagaaggctgat 535 |||||||||||||||||||||| Sbjct: 125486 ttctgtagctgagaaggctgat 125507
>gb|AC101883.6| Mus musculus chromosome 1, clone RP23-402F17, complete sequence Length = 191721 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 aaatgcctttgcaagcacaaa 178 ||||||||||||||||||||| Sbjct: 167173 aaatgcctttgcaagcacaaa 167193
>emb|AL390115.18| Human DNA sequence from clone RP11-479J7 on chromosome 1 Contains a novel gene and the 3' end of a novel gene, complete sequence Length = 102533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 591 agaagaggaagagtgaggaga 611 ||||||||||||||||||||| Sbjct: 45570 agaagaggaagagtgaggaga 45550
>gb|AE014820.1| Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tgtgaaagcaaagaacaggaa 303 ||||||||||||||||||||| Sbjct: 38778 tgtgaaagcaaagaacaggaa 38758
>gb|AC093866.3| Homo sapiens BAC clone RP11-582C12 from 4, complete sequence Length = 159764 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 gcttgtgaagtatttggtgag 369 ||||||||||||||||||||| Sbjct: 106362 gcttgtgaagtatttggtgag 106342
>gb|AC168153.2| Mus musculus chromosome 18, clone wi1-1640H20, complete sequence Length = 40183 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 22865 ctgaggagaaggatgattctgtag 22888
>gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, complete sequence Length = 187196 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 17318 ctgaggagaaggatgattctgtag 17341
>gb|AY022715.1| Oryza sativa microsatellite MRG5040 containing (CCG)X9, closest to marker C405, genomic sequence Length = 227 Score = 40.1 bits (20), Expect = 8.5 Identities = 38/44 (86%) Strand = Plus / Minus Query: 17 ctgcacaaggctgcgaggtcgggtgatgcggcggcggtggagtc 60 ||||||||||| ||| ||||||| ||| |||||||| |||||| Sbjct: 48 ctgcacaaggccgcgcggtcgggagatttggcggcggcggagtc 5
>gb|BC076546.1| Danio rerio frizzled homolog 10, mRNA (cDNA clone MGC:91791 IMAGE:7042011), complete cds Length = 3005 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 1598 tccatctggcggcatgggct 1617
>gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosome 18, complete sequence Length = 169912 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ggcatgggctgggcatgttg 149 |||||||||||||||||||| Sbjct: 86433 ggcatgggctgggcatgttg 86452
>gb|AC133957.2| Mus musculus BAC clone RP23-367D8 from chromosome 3, complete sequence Length = 99713 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ttttgcttcccagaaaggtcattt 246 |||||||||||| ||||||||||| Sbjct: 44580 ttttgcttcccacaaaggtcattt 44603
>gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome 12, complete sequence Length = 149712 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 60964 ctgaggagaaggatgattctgtag 60987
>gb|AC107759.18| Mus musculus chromosome 5, clone RP23-193N17, complete sequence Length = 262970 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 216079 ctgaggagaaggatgattctgtag 216102
>gb|AC125488.3| Mus musculus BAC clone RP23-75M24 from 12, complete sequence Length = 183202 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 63005 ctgaggagaaggatgattctgtag 62982
>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence Length = 212273 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 93839 ctgaggagaaggatgattctgtag 93816
>gb|AC122021.2| Mus musculus BAC clone RP24-366N1 from 3, complete sequence Length = 186873 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ttttgcttcccagaaaggtcattt 246 |||||||||||| ||||||||||| Sbjct: 6213 ttttgcttcccacaaaggtcattt 6190
>emb|CR719754.2|CNS0GIB4 Tetraodon nigroviridis full-length cDNA Length = 771 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 actcggaccctctcgccctc 88 |||||||||||||||||||| Sbjct: 467 actcggaccctctcgccctc 448
>emb|CR718320.2|CNS0GH7A Tetraodon nigroviridis full-length cDNA Length = 796 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 actcggaccctctcgccctc 88 |||||||||||||||||||| Sbjct: 487 actcggaccctctcgccctc 468
>gb|AC107819.8| Mus musculus chromosome 9, clone RP23-158E1, complete sequence Length = 172309 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 4955 ctgaggagaaggatgattctgtag 4932
>emb|CR679013.2|CNS0FMVL Tetraodon nigroviridis full-length cDNA Length = 1070 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 587 ggcgagaagaggaagagtgaggagattg 614 |||| |||||||||||| |||||||||| Sbjct: 516 ggcgtgaagaggaagagagaggagattg 543
>gb|U53181.1| Caenorhabditis elegans cosmid F36D4, complete sequence Length = 42041 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cattttgcttcccagaaagg 240 |||||||||||||||||||| Sbjct: 39582 cattttgcttcccagaaagg 39563
>gb|AC142338.1| Pan troglodytes BAC clone RP43-41H4 from 7, complete sequence Length = 186208 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttcccagaaaggtcatttgg 248 |||||||||||||||||||| Sbjct: 135418 ttcccagaaaggtcatttgg 135437
>emb|CR450819.7| Zebrafish DNA sequence from clone DKEY-245G2 in linkage group 8, complete sequence Length = 168244 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 144395 tccatctggcggcatgggct 144376
>gb|AC130186.4| Atelerix albiventris clone LB4-244I20, complete sequence Length = 150635 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 aaagaacaggaaaggtttca 311 |||||||||||||||||||| Sbjct: 71785 aaagaacaggaaaggtttca 71804
>emb|CR788314.7| Zebrafish DNA sequence from clone DKEY-205J18 in linkage group 8, complete sequence Length = 164950 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 121698 tccatctggcggcatgggct 121679
>gb|AC154634.2| Mus musculus BAC clone RP23-298D14 from chromosome 14, complete sequence Length = 218356 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 tgagaagaaggatgattctgtagc 522 |||||||||| ||||||||||||| Sbjct: 36874 tgagaagaagaatgattctgtagc 36851
>gb|AC024086.5| Homo sapiens chromosome 7 clone RP11-242F21, complete sequence Length = 153232 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttcccagaaaggtcatttgg 248 |||||||||||||||||||| Sbjct: 116641 ttcccagaaaggtcatttgg 116660
>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence Length = 173644 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 tcgggtgatgcggcggcggtggag 58 ||||||||| |||||||||||||| Sbjct: 77216 tcgggtgatccggcggcggtggag 77239
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 aaagaacaggaaaggtttca 311 |||||||||||||||||||| Sbjct: 832691 aaagaacaggaaaggtttca 832710
>emb|CR361553.4| Mouse DNA sequence from clone RP24-456I14 on chromosome X, complete sequence Length = 52670 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ctgagaagaaggatgattctgtag 521 |||||||||||| ||||||||||| Sbjct: 8197 ctgagaagaagggtgattctgtag 8220
>gb|AC154336.2| Mus musculus BAC clone RP23-252B13 from chromosome 9, complete sequence Length = 184358 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 123646 ctgaggagaaggatgattctgtag 123669
>gb|AC154419.2| Mus musculus BAC clone RP24-212C1 from chromosome 14, complete sequence Length = 167114 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caaagaacaggaaaggtttc 310 |||||||||||||||||||| Sbjct: 36134 caaagaacaggaaaggtttc 36115
>gb|AC158999.2| Mus musculus BAC clone RP24-201N16 from chromosome 9, complete sequence Length = 169860 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 168772 ctgaggagaaggatgattctgtag 168749
>gb|AC153870.8| Mus musculus 10 BAC RP23-473J14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 164663 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gtgaaagcaaagaacaggaa 303 |||||||||||||||||||| Sbjct: 100665 gtgaaagcaaagaacaggaa 100684
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gggtgatgcggcggcggtgg 56 |||||||||||||||||||| Sbjct: 16614298 gggtgatgcggcggcggtgg 16614317
>gb|AY016010.1| Apteryx mantelli mitochondrion, partial genome Length = 12269 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 attctgtagctgagaaggct 532 |||||||||||||||||||| Sbjct: 8044 attctgtagctgagaaggct 8025
>gb|AC149788.2| Pan troglodytes BAC clone CH251-63L13 from chromosome 7, complete sequence Length = 171501 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttcccagaaaggtcatttgg 248 |||||||||||||||||||| Sbjct: 165421 ttcccagaaaggtcatttgg 165402
>ref|NM_131136.1| Danio rerio frizzled homolog 10 (fzd10), mRNA Length = 1743 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 1061 tccatctggcggcatgggct 1080
>ref|NM_130917.1| Danio rerio frizzled homolog 10 (fzd10), mRNA Length = 2926 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 1523 tccatctggcggcatgggct 1542
>gb|AC022506.38| Homo sapiens 12 BAC RP11-181L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172136 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 acagcgttgcactttgctgctcag 334 |||| ||||||||||||||||||| Sbjct: 48173 acagagttgcactttgctgctcag 48150
>gb|AE004705.1| Pseudomonas aeruginosa PAO1, section 266 of 529 of the complete genome Length = 10369 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gcggcggcggtggagtcgct 63 |||||||||||||||||||| Sbjct: 4917 gcggcggcggtggagtcgct 4936
>gb|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5, complete sequence Length = 185124 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttcccagaaaggtcatttgg 248 |||||||||||||||||||| Sbjct: 113046 ttcccagaaaggtcatttgg 113065
>gb|AC167668.1| Mus musculus BAC clone RP24-241I19 from chromosome 14, complete sequence Length = 173679 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 caaagaacaggaaaggtttc 310 |||||||||||||||||||| Sbjct: 22235 caaagaacaggaaaggtttc 22254
>gb|AC142113.2| Mus musculus BAC clone RP23-444K20 from chromosome 9, complete sequence Length = 188724 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 acgtgcgtgctttcctgaaa 457 |||||||||||||||||||| Sbjct: 89733 acgtgcgtgctttcctgaaa 89752
>gb|AC091301.3| Danio rerio clone 1K20, complete sequence Length = 48082 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 9843 tccatctggcggcatgggct 9862
>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete sequence Length = 217552 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 152362 ctgaggagaaggatgattctgtag 152339
>gb|AF039411.1|AF039411 Danio rerio frizzled homolog (zfzB) mRNA, complete cds Length = 2926 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 1523 tccatctggcggcatgggct 1542
>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence Length = 217034 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 155656 ctgaggagaaggatgattctgtag 155633
>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519B12 Length = 147542 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gggtgatgcggcggcggtgg 56 |||||||||||||||||||| Sbjct: 56265 gggtgatgcggcggcggtgg 56284
>dbj|AK109960.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-B06, full insert sequence Length = 3892 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atgcggcggcggtggagtcg 61 |||||||||||||||||||| Sbjct: 2104 atgcggcggcggtggagtcg 2123
>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence Length = 193738 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tgaaagcaaagaacaggaaa 304 |||||||||||||||||||| Sbjct: 149440 tgaaagcaaagaacaggaaa 149459
>gb|AC122222.6| Mus musculus BAC clone RP23-128D11 from 7, complete sequence Length = 212225 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tgaaagcaaagaacaggaaa 304 |||||||||||||||||||| Sbjct: 19091 tgaaagcaaagaacaggaaa 19110
>gb|AC140346.4| Mus musculus BAC clone RP24-260I8 from 16, complete sequence Length = 185587 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 aagcaaagaacaggaaaggtttca 311 |||||||||||||||||| ||||| Sbjct: 115504 aagcaaagaacaggaaagctttca 115527
>gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complete sequence Length = 179607 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 acgtgcgtgctttcctgaaa 457 |||||||||||||||||||| Sbjct: 8226 acgtgcgtgctttcctgaaa 8207
>emb|AL591442.2| Zebrafish DNA sequence from clone BUSM1-228J01 in linkage group 8, complete sequence Length = 99866 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 15831 tccatctggcggcatgggct 15812
>gb|AF117388.1|AF117388 Danio rerio frizzled protein (fz4) mRNA, complete cds Length = 1743 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 1061 tccatctggcggcatgggct 1080
>gb|AC109255.10| Mus musculus chromosome 16, clone RP23-359P19, complete sequence Length = 206967 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 17450 ctgaggagaaggatgattctgtag 17427
>emb|AL591180.4| Zebrafish DNA sequence from clone BUSM1-243A08 in linkage group 8 Contains a novel and partly predicted gene for a protein similar to major histocompatibility complex class II DCB gene (mhc2dcb), MHC2DBC related sequence (mhc2dbc-rs), part of a novel gene for a protein similar to MHC class II alpha chain, the fzd10 gene for frizzled homologue 10 and a GpC island, complete sequence Length = 80272 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 68280 tccatctggcggcatgggct 68299
>gb|AC136021.5| Mus musculus BAC clone RP24-473P10 from 9, complete sequence Length = 171139 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 159948 ctgaggagaaggatgattctgtag 159925
>emb|AL772342.12| Mouse DNA sequence from clone RP23-105D19 on chromosome 2, complete sequence Length = 206806 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ctgagaagaaggatgattctgtag 521 ||||| |||||||||||||||||| Sbjct: 143896 ctgaggagaaggatgattctgtag 143873
>gb|U49408.1|DRU49408 Danio rerio Zg04 gene, partial cds Length = 546 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccatctggcggcatgggct 139 |||||||||||||||||||| Sbjct: 296 tccatctggcggcatgggct 315
>gb|AY644680.1| Phlebotomus papatasi midgut chitinase mRNA, complete cds Length = 1578 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 588 gcgagaagaggaagagtgag 607 |||||||||||||||||||| Sbjct: 989 gcgagaagaggaagagtgag 1008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,926,902 Number of Sequences: 3902068 Number of extensions: 5926902 Number of successful extensions: 123501 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123141 Number of HSP's gapped (non-prelim): 360 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)