No.
Definition
Score (bits)
E Value
1 gb|AY107573.1| Zea mays PCO077294 mRNA sequence
319
6e-84
2 dbj|AK099694.1| Oryza sativa (japonica cultivar-group) cDNA clon...
145
2e-31
3 dbj|AK059540.1| Oryza sativa (japonica cultivar-group) cDNA clon...
145
2e-31
4 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
135
2e-28
5 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
135
2e-28
6 emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102...
135
2e-28
7 gb|BT023990.1| Zea mays clone EL01N0412C01 mRNA sequence
82
2e-12
8 gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome...
80
9e-12
9 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
80
9e-12
10 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
80
9e-12
11 gb|BT013686.1| Lycopersicon esculentum clone 132509R, mRNA sequence
64
5e-07
12 gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, co...
46
0.13
13 gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare str...
44
0.50
14 ref|XM_582695.2| PREDICTED: Bos taurus similar to Protein C2orf2...
40
7.8
15 emb|AL591065.17| Mouse DNA sequence from clone RP23-199H17 on ch...
40
7.8
16 gb|AC169833.4| Rhesus Macaque BAC CH250-207J10 (Children's Hosp...
40
7.8
17 dbj|AK093090.1| Homo sapiens cDNA FLJ35771 fis, clone TESTI2005085
40
7.8
18 gb|AC100771.2| Homo sapiens chromosome 11, clone RP11-159H22, co...
40
7.8
19 gb|AC164657.4| Pan troglodytes BAC clone CH251-389C15 from chrom...
40
7.8
20 emb|BX072537.8| Zebrafish DNA sequence from clone DKEY-15F17, co...
40
7.8
21 gb|AC004672.1|AC004672 Homo sapiens 12p13.3-0-2.7 BAC RP5-951N9 ...
40
7.8
22 gb|AF194984.1|AF194984 Bos grunniens alpha s2 casein gene, promo...
40
7.8
23 dbj|AP003025.2| Homo sapiens genomic DNA, chromosome 11q, clone:...
40
7.8
24 gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
40
7.8
25 dbj|AP006395.1| Lotus japonicus genomic DNA, chromosome 3, clone...
40
7.8
26 emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on ch...
40
7.8
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 135 bits (68), Expect = 2e-28
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 231 agctacagtggctaaatcctgacaacactcatgagctattatgggattatagcatgtgtg 290
||||||| ||| | || |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 5064889 agctacaatggttgaaccctgacaacaatcacgagctattatgggattatagcatgtgtg 5064948
Query: 291 ctgacacgagtcgtggggctgcgatccgtgatttgattgcgagagccttaaaaggtcctc 350
||||||| ||||| || ||||| || || ||||||||||| ||||||||||||||||| |
Sbjct: 5064949 ctgacacaagtcgaggtgctgctattcgagatttgattgcaagagccttaaaaggtccac 5065008
Query: 351 ttgtacct 358
||| ||||
Sbjct: 5065009 ttgcacct 5065016
Score = 125 bits (63), Expect = 2e-25
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 103 caaacaaaaatctgcttccgatgatagagattctgctcttgttgctttactccaagcaaa 162
||||| |||||||||||| ||||||||||||| |||||||| || ||||||||||| |||
Sbjct: 5064675 caaaccaaaatctgcttctgatgatagagattttgctcttgctggtttactccaagaaaa 5064734
Query: 163 atcatggggaagattgggtccccaatggata 193
||||||||||||||||||||| |||||||||
Sbjct: 5064735 atcatggggaagattgggtccgcaatggata 5064765
Score = 79.8 bits (40), Expect = 9e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 26 actgttagatgtgctataccggatccagatatacctcaaagttgtgccaattcatcagag 85
|||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||
Sbjct: 5064489 actgttagatgtgctataccggatccagatgtacctcaaagctgtgtaaattcgtcagag 5064548
Score = 71.9 bits (36), Expect = 2e-09
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 524 gatgttcttgtgcacatggagatgagcctacattcgatggaagttgta 571
|||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 5065622 gatgttcttgtgcatatggagatgagcctgcattctatggaagttgta 5065669
Score = 67.9 bits (34), Expect = 3e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 443 gaccttgttgagcataatccactcattgctgtagagcttctttcgaagcttatgaactct 502
||||||||||| || ||||||||||||||||| || |||||||||| | |||||||||
Sbjct: 5065454 gaccttgttgaacacaatccactcattgctgttgaaattctttcgaaattgatgaactct 5065513
Query: 503 ccggacattg 512
|| |||||||
Sbjct: 5065514 cctgacattg 5065523
Score = 40.1 bits (20), Expect = 7.8
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 369 agcaagttgttatagaattggtgaaggactctaagctagtctatcactgtgggatgactc 428
||||||| || |||||| ||| |||||||| ||| | || ||||| || ||||||||||
Sbjct: 5065273 agcaagtcgtaatagaactggcaaaggactcgaagttggtgtatcattgcgggatgactc 5065332
Query: 429 caca 432
||||
Sbjct: 5065333 caca 5065336
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 135 bits (68), Expect = 2e-28
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 231 agctacagtggctaaatcctgacaacactcatgagctattatgggattatagcatgtgtg 290
||||||| ||| | || |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 5064871 agctacaatggttgaaccctgacaacaatcacgagctattatgggattatagcatgtgtg 5064930
Query: 291 ctgacacgagtcgtggggctgcgatccgtgatttgattgcgagagccttaaaaggtcctc 350
||||||| ||||| || ||||| || || ||||||||||| ||||||||||||||||| |
Sbjct: 5064931 ctgacacaagtcgaggtgctgctattcgagatttgattgcaagagccttaaaaggtccac 5064990
Query: 351 ttgtacct 358
||| ||||
Sbjct: 5064991 ttgcacct 5064998
Score = 125 bits (63), Expect = 2e-25
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 103 caaacaaaaatctgcttccgatgatagagattctgctcttgttgctttactccaagcaaa 162
||||| |||||||||||| ||||||||||||| |||||||| || ||||||||||| |||
Sbjct: 5064657 caaaccaaaatctgcttctgatgatagagattttgctcttgctggtttactccaagaaaa 5064716
Query: 163 atcatggggaagattgggtccccaatggata 193
||||||||||||||||||||| |||||||||
Sbjct: 5064717 atcatggggaagattgggtccgcaatggata 5064747
Score = 79.8 bits (40), Expect = 9e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 26 actgttagatgtgctataccggatccagatatacctcaaagttgtgccaattcatcagag 85
|||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||
Sbjct: 5064471 actgttagatgtgctataccggatccagatgtacctcaaagctgtgtaaattcgtcagag 5064530
Score = 71.9 bits (36), Expect = 2e-09
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 524 gatgttcttgtgcacatggagatgagcctacattcgatggaagttgta 571
|||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 5065604 gatgttcttgtgcatatggagatgagcctgcattctatggaagttgta 5065651
Score = 67.9 bits (34), Expect = 3e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 443 gaccttgttgagcataatccactcattgctgtagagcttctttcgaagcttatgaactct 502
||||||||||| || ||||||||||||||||| || |||||||||| | |||||||||
Sbjct: 5065436 gaccttgttgaacacaatccactcattgctgttgaaattctttcgaaattgatgaactct 5065495
Query: 503 ccggacattg 512
|| |||||||
Sbjct: 5065496 cctgacattg 5065505
Score = 40.1 bits (20), Expect = 7.8
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 369 agcaagttgttatagaattggtgaaggactctaagctagtctatcactgtgggatgactc 428
||||||| || |||||| ||| |||||||| ||| | || ||||| || ||||||||||
Sbjct: 5065255 agcaagtcgtaatagaactggcaaaggactcgaagttggtgtatcattgcgggatgactc 5065314
Query: 429 caca 432
||||
Sbjct: 5065315 caca 5065318
>emb|AL713901.3 |CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 112231
Score = 135 bits (68), Expect = 2e-28
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 231 agctacagtggctaaatcctgacaacactcatgagctattatgggattatagcatgtgtg 290
||||||| ||| | || |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 35542 agctacaatggttgaaccctgacaacaatcacgagctattatgggattatagcatgtgtg 35601
Query: 291 ctgacacgagtcgtggggctgcgatccgtgatttgattgcgagagccttaaaaggtcctc 350
||||||| ||||| || ||||| || || ||||||||||| ||||||||||||||||| |
Sbjct: 35602 ctgacacaagtcgaggtgctgctattcgagatttgattgcaagagccttaaaaggtccac 35661
Query: 351 ttgtacct 358
||| ||||
Sbjct: 35662 ttgcacct 35669
Score = 125 bits (63), Expect = 2e-25
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 103 caaacaaaaatctgcttccgatgatagagattctgctcttgttgctttactccaagcaaa 162
||||| |||||||||||| ||||||||||||| |||||||| || ||||||||||| |||
Sbjct: 35328 caaaccaaaatctgcttctgatgatagagattttgctcttgctggtttactccaagaaaa 35387
Query: 163 atcatggggaagattgggtccccaatggata 193
||||||||||||||||||||| |||||||||
Sbjct: 35388 atcatggggaagattgggtccgcaatggata 35418
Score = 79.8 bits (40), Expect = 9e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 26 actgttagatgtgctataccggatccagatatacctcaaagttgtgccaattcatcagag 85
|||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||
Sbjct: 35142 actgttagatgtgctataccggatccagatgtacctcaaagctgtgtaaattcgtcagag 35201
Score = 71.9 bits (36), Expect = 2e-09
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 524 gatgttcttgtgcacatggagatgagcctacattcgatggaagttgta 571
|||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 36275 gatgttcttgtgcatatggagatgagcctgcattctatggaagttgta 36322
Score = 67.9 bits (34), Expect = 3e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 443 gaccttgttgagcataatccactcattgctgtagagcttctttcgaagcttatgaactct 502
||||||||||| || ||||||||||||||||| || |||||||||| | |||||||||
Sbjct: 36107 gaccttgttgaacacaatccactcattgctgttgaaattctttcgaaattgatgaactct 36166
Query: 503 ccggacattg 512
|| |||||||
Sbjct: 36167 cctgacattg 36176
Score = 40.1 bits (20), Expect = 7.8
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 369 agcaagttgttatagaattggtgaaggactctaagctagtctatcactgtgggatgactc 428
||||||| || |||||| ||| |||||||| ||| | || ||||| || ||||||||||
Sbjct: 35926 agcaagtcgtaatagaactggcaaaggactcgaagttggtgtatcattgcgggatgactc 35985
Query: 429 caca 432
||||
Sbjct: 35986 caca 35989
>gb|AC137993.2 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0122P24, complete sequence
Length = 136104
Score = 79.8 bits (40), Expect = 9e-12
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 516 gttattttgatgttcttgtgcacatggagatgagcctacattcgatggaagttgta 571
|||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 26477 gttactttgatattcttgtgcacatggaaatgagcctacattcaatggaagttgta 26422
Score = 50.1 bits (25), Expect = 0.008
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 383 gaattggtgaaggactctaagctagtctatcactgtgggatgactccacagaa 435
||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 26792 gaattggcaaaggactggaagctagtttatcattgtgggatgacaccacagaa 26740
Score = 44.1 bits (22), Expect = 0.50
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 9 gtagtttcagaagcgctactgttagatgtgctataccggatccagatatacctcaaag 66
||||||||||| |||||||||||| ||| ||| || ||||||||||| |||||||
Sbjct: 35390 gtagtttcagagaagctactgttagaagtgttattcctgatccagatatttctcaaag 35333
Score = 44.1 bits (22), Expect = 0.50
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 gagctattatgggattatagcatgtgtgctgacacgagtcgtggggctgcgatccgtgat 322
|||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||| |||
Sbjct: 34968 gagctattgtgggacagtagtatgtgtgctgatactagtcgaggtgctgcgatccgagat 34909
Query: 323 tt 324
||
Sbjct: 34908 tt 34907
Score = 40.1 bits (20), Expect = 7.8
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 443 gaccttgttgagcataatccactcattgctgt 474
|||||||| || |||||||||||| |||||||
Sbjct: 26658 gaccttgtggaacataatccactcgttgctgt 26627
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 79.8 bits (40), Expect = 9e-12
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 516 gttattttgatgttcttgtgcacatggagatgagcctacattcgatggaagttgta 571
|||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 7444321 gttactttgatattcttgtgcacatggaaatgagcctacattcaatggaagttgta 7444376
Score = 50.1 bits (25), Expect = 0.008
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 383 gaattggtgaaggactctaagctagtctatcactgtgggatgactccacagaa 435
||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 7444006 gaattggcaaaggactggaagctagtttatcattgtgggatgacaccacagaa 7444058
Score = 44.1 bits (22), Expect = 0.50
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 263 gagctattatgggattatagcatgtgtgctgacacgagtcgtggggctgcgatccgtgat 322
|||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||| |||
Sbjct: 7435830 gagctattgtgggacagtagtatgtgtgctgatactagtcgaggtgctgcgatccgagat 7435889
Query: 323 tt 324
||
Sbjct: 7435890 tt 7435891
Score = 44.1 bits (22), Expect = 0.50
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 9 gtagtttcagaagcgctactgttagatgtgctataccggatccagatatacctcaaag 66
||||||||||| |||||||||||| ||| ||| || ||||||||||| |||||||
Sbjct: 7435408 gtagtttcagagaagctactgttagaagtgttattcctgatccagatatttctcaaag 7435465
Score = 40.1 bits (20), Expect = 7.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 443 gaccttgttgagcataatccactcattgctgt 474
|||||||| || |||||||||||| |||||||
Sbjct: 7444140 gaccttgtggaacataatccactcgttgctgt 7444171
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 79.8 bits (40), Expect = 9e-12
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 516 gttattttgatgttcttgtgcacatggagatgagcctacattcgatggaagttgta 571
|||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 7514407 gttactttgatattcttgtgcacatggaaatgagcctacattcaatggaagttgta 7514462
Score = 50.1 bits (25), Expect = 0.008
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 383 gaattggtgaaggactctaagctagtctatcactgtgggatgactccacagaa 435
||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 7514092 gaattggcaaaggactggaagctagtttatcattgtgggatgacaccacagaa 7514144
Score = 44.1 bits (22), Expect = 0.50
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 263 gagctattatgggattatagcatgtgtgctgacacgagtcgtggggctgcgatccgtgat 322
|||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||| |||
Sbjct: 7505916 gagctattgtgggacagtagtatgtgtgctgatactagtcgaggtgctgcgatccgagat 7505975
Query: 323 tt 324
||
Sbjct: 7505976 tt 7505977
Score = 44.1 bits (22), Expect = 0.50
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 9 gtagtttcagaagcgctactgttagatgtgctataccggatccagatatacctcaaag 66
||||||||||| |||||||||||| ||| ||| || ||||||||||| |||||||
Sbjct: 7505494 gtagtttcagagaagctactgttagaagtgttattcctgatccagatatttctcaaag 7505551
Score = 40.1 bits (20), Expect = 7.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 443 gaccttgttgagcataatccactcattgctgt 474
|||||||| || |||||||||||| |||||||
Sbjct: 7514226 gaccttgtggaacataatccactcgttgctgt 7514257
>gb|AC083751.6 | Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0042K08, from chromosome 2, complete sequence
Length = 164628
Score = 44.1 bits (22), Expect = 0.50
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 9 gtagtttcagaagcgctactgttagatgtgctataccggatccagatatacctcaaag 66
||||||||||| |||||||||||| ||| ||| || ||||||||||| |||||||
Sbjct: 4070 gtagtttcagagaagctactgttagaagtgttattcctgatccagatatttctcaaag 4013
Score = 44.1 bits (22), Expect = 0.50
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 263 gagctattatgggattatagcatgtgtgctgacacgagtcgtggggctgcgatccgtgat 322
|||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||| |||
Sbjct: 3648 gagctattgtgggacagtagtatgtgtgctgatactagtcgaggtgctgcgatccgagat 3589
Query: 323 tt 324
||
Sbjct: 3588 tt 3587
>emb|AL683814.10 | Mouse DNA sequence from clone RP23-165L23 on chromosome 2, complete
sequence
Length = 191052
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 511 tgcaggttattttgatgttcttgt 534
|||||||||||||||| |||||||
Sbjct: 105310 tgcaggttattttgattttcttgt 105287
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,584,941
Number of Sequences: 3902068
Number of extensions: 4584941
Number of successful extensions: 90848
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90647
Number of HSP's gapped (non-prelim): 198
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)