ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29n18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 327 bits (165), Expect = 2e-86 Identities = 369/437 (84%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct: 454 actggaaaccgtgtctttggtgccctcaagggagctttggatggtggtcttgacattcct 513 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 |||||||||||||| |||||||| |||||||||||||||||| || ||| |||| ||| Sbjct: 514 cacagtgacaagaggtttgctgggttcaagaaggacgagaagcagcttgattctgatatt 573 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 ||||||||||||||||| || ||||| || ||||||||||||||||| | || || ||| Sbjct: 574 caccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggaggag 633 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 ||||| ||||| | |||| | ||||||||||||||| ||||||||||||| |||||| Sbjct: 634 gaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgctgat 693 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcc 302 | |||||||||| | ||||||||||| || ||||||||||| |||||||||| ||||||| Sbjct: 694 ggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatggcc 753 Query: 303 aaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctac 362 |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||||| Sbjct: 754 aaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaacctac 813 Query: 363 gaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggtgcc 422 || ||||||||||||| || ||||| || | || || |||||| |||||||||||| Sbjct: 814 gaacagaggaaggccagtcttgtcgaaagattgaatgctctcaactcctctgctggtgct 873 Query: 423 gccgacgatgacgagga 439 | || ||||||||||| Sbjct: 874 gatgatgatgacgagga 890
>dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H05, full insert sequence Length = 1219 Score = 327 bits (165), Expect = 2e-86 Identities = 369/437 (84%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct: 550 actggaaaccgtgtctttggtgccctcaagggagctttggatggtggtcttgacattcct 609 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 |||||||||||||| |||||||| |||||||||||||||||| || ||| |||| ||| Sbjct: 610 cacagtgacaagaggtttgctgggttcaagaaggacgagaagcagcttgattctgatatt 669 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 ||||||||||||||||| || ||||| || ||||||||||||||||| | || || ||| Sbjct: 670 caccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggaggag 729 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 ||||| ||||| | |||| | ||||||||||||||| ||||||||||||| |||||| Sbjct: 730 gaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgctgat 789 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcc 302 | |||||||||| | ||||||||||| || ||||||||||| |||||||||| ||||||| Sbjct: 790 ggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatggcc 849 Query: 303 aaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctac 362 |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||||| Sbjct: 850 aaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaacctac 909 Query: 363 gaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggtgcc 422 || ||||||||||||| || ||||| || | || || |||||| |||||||||||| Sbjct: 910 gaacagaggaaggccagtcttgtcgaaagattgaatgctctcaactcctctgctggtgct 969 Query: 423 gccgacgatgacgagga 439 | || ||||||||||| Sbjct: 970 gatgatgatgacgagga 986
>emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA Length = 1114 Score = 313 bits (158), Expect = 3e-82 Identities = 369/438 (84%), Gaps = 1/438 (0%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct: 463 actggaaaccgtgtctttggtgccctcaagggagctttggatggtggtcttgacattcct 522 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 |||||||||||||| |||||||| |||||||||||||||||| || ||| |||| ||| Sbjct: 523 cacagtgacaagaggtttgctgggttcaagaaggacgagaagcagcttgattctgatatt 582 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 ||||||||||||||||| || ||||| || ||||||||||||||||| | || || ||| Sbjct: 583 caccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggaggag 642 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 ||||| ||||| | |||| | ||||||||||||||| ||||||||||||| |||||| Sbjct: 643 gaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgctgat 702 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgat-cctagcatggc 301 | |||||||||| | ||||||||||| || ||||||||||| |||||| |||| |||||| Sbjct: 703 ggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatccctaccatggc 762 Query: 302 caaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcaccta 361 ||||||||||||| | || ||| |||||||| ||||||| ||||||||| ||||| Sbjct: 763 caaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaaccta 822 Query: 362 cgaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggtgc 421 ||| ||||||||||||| || ||||| || | || || |||||| |||||||||||| Sbjct: 823 cgaacagaggaaggccagtcttgtcgaaagattgaatgctctcaactcctctgctggtgc 882 Query: 422 cgccgacgatgacgagga 439 | || ||||||||||| Sbjct: 883 tgatgatgatgacgagga 900
>dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full insert sequence Length = 1219 Score = 311 bits (157), Expect = 1e-81 Identities = 368/437 (84%), Gaps = 1/437 (0%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct: 551 actggaaaccgtgtctttggtgccctcaagggagctttggatggtggtcttgacattcct 610 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 |||||||||||||| |||||||| |||||||||||||||||| || ||| ||| ||| Sbjct: 611 cacagtgacaagaggtttgctgggttcaagaaggacgagaagcagcttgattctggtatt 670 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 ||||||||||||||||| || ||||| || ||||||||||||||||| | || || ||| Sbjct: 671 caccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggcggaggag 730 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 ||||| ||||| | |||| | ||||||||||||||| ||||||||||||| |||||| Sbjct: 731 gaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgctgat 790 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcc 302 | |||||||||| | ||||||||||| || ||||||||||| |||||||||| ||||||| Sbjct: 791 ggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatggcc 850 Query: 303 aaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctac 362 |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||||| Sbjct: 851 aaatcaaccaagaaggaaccggcgacccacaagagatacaacctcaagaagctaacctac 910 Query: 363 gaggagaggaaggccagcctcgtcgagaggctcaacgccctcaacaactctgctggtgcc 422 || ||||||||||||| || ||||| || | || || |||||| |||||||||||| Sbjct: 911 gaacagaggaaggccagtct-gtcgaaagattgaatgctctcaactcctctgctggtgct 969 Query: 423 gccgacgatgacgagga 439 | || ||||||||||| Sbjct: 970 gatgatgatgacgagga 986
>ref|NM_190269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 305 bits (154), Expect = 8e-80 Identities = 328/386 (84%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct: 463 actggaaaccgtgtctttggtgccctcaagggagctttggatggtggtcttgacattcct 522 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 |||||||||||||| |||||||| |||||||||||||||||| || ||| |||| ||| Sbjct: 523 cacagtgacaagaggtttgctgggttcaagaaggacgagaagcagcttgattctgatatt 582 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 ||||||||||||||||| || ||||| || ||||||||||||||||| | || || ||| Sbjct: 583 caccgcaagtacatctacggtgggcacgtggctgactacatgaggtctatggctgaggag 642 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 ||||| ||||| | |||| | ||||| ||||||||| ||||||||||||| |||||| Sbjct: 643 gaacctgagaaattccaagcccactttagtgagtacctcaagaagggaattgacgctgat 702 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcc 302 | ||||||| || | ||||||||||| || |||||||||||||| ||||||| ||||||| Sbjct: 703 ggcatggaatcactgtacaagaaggtccatgctgccatccgcgccgatcctaccatggcc 762 Query: 303 aaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctac 362 ||||| |||||| | || || |||||||| ||||||| ||||||||| |||||| Sbjct: 763 aaatcgaccaagaaggaaccggctacccacaagagatacaacctcaagaagctgacctac 822 Query: 363 gaggagaggaaggccagcctcgtcga 388 ||| ||||||||||||| |||||||| Sbjct: 823 gagcagaggaaggccagtctcgtcga 848
>gb|AY109375.1| Zea mays CL457_2 mRNA sequence Length = 1397 Score = 285 bits (144), Expect = 7e-74 Identities = 333/396 (84%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 ||||| |||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| Sbjct: 538 actgggaaccgtgtctttggtgccctcaagggagctttggatggtggcctggatattcct 597 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 ||||| || ||||| |||||||||||||||||||| || ||| ||||||||||| || Sbjct: 598 cacagcgagaagaggtttgctggtttcaagaaggatgacaagcagctggatgctgatatc 657 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 || ||||||||||||||||| || ||||||||||||||||||||| || || || ||| Sbjct: 658 catcgcaagtacatctatggtggccatgttgctgactacatgaggaacctcgctgaagag 717 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 || || ||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct: 718 gagccagagaagtaccagtctcacttcagtgagtacattaagaagggaattgaggctgat 777 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcc 302 ||||||||||| | ||||||||||| || ||||||||||| ||||||||| ||| | | Sbjct: 778 gacatggaagctctgtacaagaaggtccatgctgccatccgtgctgatccttccattgtc 837 Query: 303 aaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctac 362 || |||||||||| | || ||| || ||||||||||||||||||||||| || || Sbjct: 838 aagtcaaccaagcagccaccaaaggagcataagaggtacaaccccaagaagctgacatat 897 Query: 363 gaggagaggaaggccagcctcgtcgagaggctcaac 398 ||| ||||||||||||||||| | || ||||||||| Sbjct: 898 gagcagaggaaggccagcctcattgaaaggctcaac 933
>gb|BT016492.1| Zea mays clone Contig325 mRNA sequence Length = 1365 Score = 270 bits (136), Expect = 4e-69 Identities = 331/396 (83%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 ||||| |||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| Sbjct: 522 actgggaaccgtgtctttggtgccctcaagggagctttggatggtggcctggatattcct 581 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 ||||| || ||||| |||||||||||||||||||| || ||| ||||||||||| || Sbjct: 582 cacagcgagaagaggtttgctggtttcaagaaggatgacaagcagctggatgctgatatc 641 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 || ||||||||||||||||| || ||||||||||||||||||||| || || || ||| Sbjct: 642 catcgcaagtacatctatggtggccatgttgctgactacatgaggaacctcgctgaagag 701 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgat 242 || || ||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 702 gagccagagaagtaccagtctcacttcagtgagtacattaagaagggaattgaggctgac 761 Query: 243 gacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggcc 302 ||||||||||| | ||||||||||| || ||||||||||| ||||||||| ||| | Sbjct: 762 gacatggaagctctgtacaagaaggtccatgctgccatccgtgctgatccttctgtggtc 821 Query: 303 aaatcaaccaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctac 362 || |||||||||| | || ||| ||||||||||||||||||||||| || || ||| Sbjct: 822 aagtcaaccaagcagccaccaaaggagcacaagaggtacaaccccaagaaactgacatac 881 Query: 363 gaggagaggaaggccagcctcgtcgagaggctcaac 398 ||| ||||||||||||| ||| | || ||||||||| Sbjct: 882 gagcagaggaaggccagtctcattgaaaggctcaac 917
>gb|BT016417.1| Zea mays clone Contig250 mRNA sequence Length = 1212 Score = 178 bits (90), Expect = 1e-41 Identities = 315/390 (80%) Strand = Plus / Plus Query: 9 aaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccacagt 68 |||||||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||| Sbjct: 543 aaccgtgtctttggtgccctcaagggagcattggatggaggcctggatattcctcacagc 602 Query: 69 gacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcaccgc 128 || ||||| |||||||| |||||||||||||| ||| |||||||||| | |||||| Sbjct: 603 gagaagaggtttgctggattcaagaaggacgacaagcagttggatgctgatacccaccgc 662 Query: 129 aagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaaccc 188 | |||||||||||| || ||||||||||||||||||| | || || || ||||| || Sbjct: 663 aggtacatctatggtggccatgttgctgactacatgaagaaccttgctgaagaggagcca 722 Query: 189 gagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagctgatgacatg 248 || |||||||| | |||||||||| |||||| ||||||||| | |||||||| || Sbjct: 723 gaaaagtaccagagccacttcagtgcgtacattaagaagggagttgaggctgatgaaata 782 Query: 249 gaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatggccaaatca 308 ||||| | ||||||||||| || ||||||||||| || |||||| ||| | || ||| Sbjct: 783 gaagcgctgtacaagaaggtccatgctgccatccgtgccgatccttccattgttaagtca 842 Query: 309 accaagccagctcccaagactcacaagaggtacaaccccaagaagctcacctacgaggag 368 ||||||| | || ||| || ||||||||||||||||||||||| || || ||| || Sbjct: 843 accaagcagccaccaaaggagcataagaggtacaaccccaagaagctgacatatgagcag 902 Query: 369 aggaaggccagcctcgtcgagaggctcaac 398 ||||||||||||||| | || ||||||||| Sbjct: 903 aggaaggccagcctcattgaaaggctcaac 932
>gb|AY106024.1| Zea mays PCO063168 mRNA sequence Length = 620 Score = 172 bits (87), Expect = 8e-40 Identities = 192/227 (84%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||| |||||||| || |||||||||||||| |||||||| || ||||| Sbjct: 361 actggaaaccgtgtctttggtgccctcaagggagctttggatggtggtctagatattcct 420 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 ||||| || ||||| |||||||| ||||||||||| || ||| ||||||||||| || Sbjct: 421 cacagcgataagaggtttgctggcttcaagaaggatgataagcagctggatgctgatatc 480 Query: 123 caccgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgag 182 || ||||||||||||||||| ||||||||||| || |||| | || || |||||| Sbjct: 481 catcgcaagtacatctatggtctccatgttgctgagtatatgaagaatctggctgatgag 540 Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaaggg 229 || |||||||||||||| |||||||||| ||||||||||||||||| Sbjct: 541 gagcccgagaagtaccaggctcacttcagcgagtacatcaagaaggg 587
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| Sbjct: 38968709 agggagctttggatggtggtcttgacattcctcacagtgacaagaggtttgctgggttca 38968768 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 |||||||||||||| || ||| |||| |||||||||||||||||||| || ||||| | Sbjct: 38968769 agaaggacgagaagcagcttgattctgatattcaccgcaagtacatctacggtgggcacg 38968828 Query: 151 ttgctgactacatgagg 167 | ||||||||||||||| Sbjct: 38968829 tggctgactacatgagg 38968845 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| Sbjct: 38963391 agggagctttggatggtggtcttgacattcctcacagtgacaagaggtttgctgggttca 38963450 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 |||||||||||||| || ||| |||| |||||||||||||||||||| || ||||| | Sbjct: 38963451 agaaggacgagaagcagcttgattctgatattcaccgcaagtacatctacggtgggcacg 38963510 Query: 151 ttgctgactacatgagg 167 | ||||||||||||||| Sbjct: 38963511 tggctgactacatgagg 38963527 Score = 133 bits (67), Expect = 7e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 180 gaggaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagct 239 |||||||| ||||| | |||| | ||||||||||||||| ||||||||||||| ||| Sbjct: 38969058 gaggaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgct 38969117 Query: 240 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 299 |||| |||||||||| | ||||||||||| || ||||||||||| |||||||||| |||| Sbjct: 38969118 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatg 38969177 Query: 300 gccaaatcaaccaag 314 ||||||||||||||| Sbjct: 38969178 gccaaatcaaccaag 38969192 Score = 109 bits (55), Expect = 9e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 180 gaggaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagct 239 |||||||| ||||| | |||| | ||||| ||||||||| ||||||||||||| ||| Sbjct: 38963726 gaggaacctgagaaattccaagcccactttagtgagtacctcaagaagggaattgacgct 38963785 Query: 240 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 299 |||| ||||||| || | ||||||||||| || |||||||||||||| ||||||| |||| Sbjct: 38963786 gatggcatggaatcactgtacaagaaggtccatgctgccatccgcgccgatcctaccatg 38963845 Query: 300 gccaaatcaaccaag 314 |||||||| |||||| Sbjct: 38963846 gccaaatcgaccaag 38963860 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 339 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcga 388 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 38963971 tacaacctcaagaagctgacctacgagcagaggaaggccagtctcgtcga 38964020 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 339 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcgagaggctcaac 398 ||||||| ||||||||| |||||||| ||||||||||||| || ||||| || | || Sbjct: 38969301 tacaacctcaagaagctaacctacgaacagaggaaggccagtcttgtcgaaagattgaat 38969360 Query: 399 gccctcaacaactctgctggtgccgccgacgatgacgagga 439 || |||||| |||||||||||| | || ||||||||||| Sbjct: 38969361 gctctcaactcctctgctggtgctgatgatgatgacgagga 38969401
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| Sbjct: 42342 agggagctttggatggtggtcttgacattcctcacagtgacaagaggtttgctgggttca 42401 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 |||||||||||||| || ||| |||| |||||||||||||||||||| || ||||| | Sbjct: 42402 agaaggacgagaagcagcttgattctgatattcaccgcaagtacatctacggtgggcacg 42461 Query: 151 ttgctgactacatgagg 167 | ||||||||||||||| Sbjct: 42462 tggctgactacatgagg 42478 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| Sbjct: 37024 agggagctttggatggtggtcttgacattcctcacagtgacaagaggtttgctgggttca 37083 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 |||||||||||||| || ||| |||| |||||||||||||||||||| || ||||| | Sbjct: 37084 agaaggacgagaagcagcttgattctgatattcaccgcaagtacatctacggtgggcacg 37143 Query: 151 ttgctgactacatgagg 167 | ||||||||||||||| Sbjct: 37144 tggctgactacatgagg 37160 Score = 133 bits (67), Expect = 7e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 180 gaggaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagct 239 |||||||| ||||| | |||| | ||||||||||||||| ||||||||||||| ||| Sbjct: 42691 gaggaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgct 42750 Query: 240 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 299 |||| |||||||||| | ||||||||||| || ||||||||||| |||||||||| |||| Sbjct: 42751 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatg 42810 Query: 300 gccaaatcaaccaag 314 ||||||||||||||| Sbjct: 42811 gccaaatcaaccaag 42825 Score = 109 bits (55), Expect = 9e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 180 gaggaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagct 239 |||||||| ||||| | |||| | ||||| ||||||||| ||||||||||||| ||| Sbjct: 37359 gaggaacctgagaaattccaagcccactttagtgagtacctcaagaagggaattgacgct 37418 Query: 240 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 299 |||| ||||||| || | ||||||||||| || |||||||||||||| ||||||| |||| Sbjct: 37419 gatggcatggaatcactgtacaagaaggtccatgctgccatccgcgccgatcctaccatg 37478 Query: 300 gccaaatcaaccaag 314 |||||||| |||||| Sbjct: 37479 gccaaatcgaccaag 37493 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 339 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcga 388 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 37604 tacaacctcaagaagctgacctacgagcagaggaaggccagtctcgtcga 37653 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 339 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcgagaggctcaac 398 ||||||| ||||||||| |||||||| ||||||||||||| || ||||| || | || Sbjct: 42934 tacaacctcaagaagctaacctacgaacagaggaaggccagtcttgtcgaaagattgaat 42993 Query: 399 gccctcaacaactctgctggtgccgccgacgatgacgagga 439 || |||||| |||||||||||| | || ||||||||||| Sbjct: 42994 gctctcaactcctctgctggtgctgatgatgatgacgagga 43034
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| Sbjct: 133495 agggagctttggatggtggtcttgacattcctcacagtgacaagaggtttgctgggttca 133554 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 |||||||||||||| || ||| |||| |||||||||||||||||||| || ||||| | Sbjct: 133555 agaaggacgagaagcagcttgattctgatattcaccgcaagtacatctacggtgggcacg 133614 Query: 151 ttgctgactacatgagg 167 | ||||||||||||||| Sbjct: 133615 tggctgactacatgagg 133631 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| Sbjct: 128177 agggagctttggatggtggtcttgacattcctcacagtgacaagaggtttgctgggttca 128236 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 |||||||||||||| || ||| |||| |||||||||||||||||||| || ||||| | Sbjct: 128237 agaaggacgagaagcagcttgattctgatattcaccgcaagtacatctacggtgggcacg 128296 Query: 151 ttgctgactacatgagg 167 | ||||||||||||||| Sbjct: 128297 tggctgactacatgagg 128313 Score = 133 bits (67), Expect = 7e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 180 gaggaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagct 239 |||||||| ||||| | |||| | ||||||||||||||| ||||||||||||| ||| Sbjct: 133844 gaggaacctgagaaattccaagcccacttcagtgagtacctcaagaagggaattgatgct 133903 Query: 240 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 299 |||| |||||||||| | ||||||||||| || ||||||||||| |||||||||| |||| Sbjct: 133904 gatggcatggaagcactgtacaagaaggtccatgctgccatccgtgctgatcctaccatg 133963 Query: 300 gccaaatcaaccaag 314 ||||||||||||||| Sbjct: 133964 gccaaatcaaccaag 133978 Score = 109 bits (55), Expect = 9e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 180 gaggaacccgagaagtaccaaactcacttcagtgagtacatcaagaagggaatctcagct 239 |||||||| ||||| | |||| | ||||| ||||||||| ||||||||||||| ||| Sbjct: 128512 gaggaacctgagaaattccaagcccactttagtgagtacctcaagaagggaattgacgct 128571 Query: 240 gatgacatggaagcagtttacaagaaggttcacgctgccatccgcgctgatcctagcatg 299 |||| ||||||| || | ||||||||||| || |||||||||||||| ||||||| |||| Sbjct: 128572 gatggcatggaatcactgtacaagaaggtccatgctgccatccgcgccgatcctaccatg 128631 Query: 300 gccaaatcaaccaag 314 |||||||| |||||| Sbjct: 128632 gccaaatcgaccaag 128646 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 339 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcga 388 ||||||| ||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 128757 tacaacctcaagaagctgacctacgagcagaggaaggccagtctcgtcga 128806 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 339 tacaaccccaagaagctcacctacgaggagaggaaggccagcctcgtcgagaggctcaac 398 ||||||| ||||||||| |||||||| ||||||||||||| || ||||| || | || Sbjct: 134087 tacaacctcaagaagctaacctacgaacagaggaaggccagtcttgtcgaaagattgaat 134146 Query: 399 gccctcaacaactctgctggtgccgccgacgatgacgagga 439 || |||||| |||||||||||| | || ||||||||||| Sbjct: 134147 gctctcaactcctctgctggtgctgatgatgatgacgagga 134187
>ref|NM_123336.3| Arabidopsis thaliana 5S rRNA binding / structural constituent of ribosome AT5G39740 mRNA, complete cds Length = 1223 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || || Sbjct: 502 actggaaaccgtgtgtttggtgcactcaagggagctttggacggaggtcttgatatccct 561 Query: 63 cacagtgacaagagatttgctggtttc 89 ||||||||||||||||||||||||||| Sbjct: 562 cacagtgacaagagatttgctggtttc 588
>gb|BT008706.1| Arabidopsis thaliana At5g39740 gene, complete cds Length = 906 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || || Sbjct: 460 actggaaaccgtgtgtttggtgcactcaagggagctttggacggaggtcttgatatccct 519 Query: 63 cacagtgacaagagatttgctggtttc 89 ||||||||||||||||||||||||||| Sbjct: 520 cacagtgacaagagatttgctggtttc 546
>gb|AY093123.1| Arabidopsis thaliana ribosomal protein L5 - like (At5g39740) mRNA, complete cds Length = 1100 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || || Sbjct: 490 actggaaaccgtgtgtttggtgcactcaagggagctttggacggaggtcttgatatccct 549 Query: 63 cacagtgacaagagatttgctggtttc 89 ||||||||||||||||||||||||||| Sbjct: 550 cacagtgacaagagatttgctggtttc 576
>gb|AY079020.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds Length = 1128 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || || Sbjct: 502 actggaaaccgtgtgtttggtgcactcaagggagctttggacggaggtcttgatatccct 561 Query: 63 cacagtgacaagagatttgctggtttc 89 ||||||||||||||||||||||||||| Sbjct: 562 cacagtgacaagagatttgctggtttc 588
>emb|BX831866.1|CNS09ZT2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1048 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||||||||||||||||| ||| ||||||||||||||||| ||||| || || || Sbjct: 479 actggaaaccgtgtgtttggtgaactcaagggagctttggacggaggtcttgatatccct 538 Query: 63 cacagtgacaagagatttgctggtttc 89 ||||||||||||||||||||||||||| Sbjct: 539 cacagtgacaagagatttgctggtttc 565
>emb|BX832617.1|CNS09YMN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || || || Sbjct: 487 actggaaaacgtgtgtttggtgcactcaagggagctttggacggaggtcttgatatccct 546 Query: 63 cacagtgacaagagatttgctggtttc 89 || ||||| |||||||||||||||||| Sbjct: 547 caaagtgaaaagagatttgctggtttc 573
>ref|NM_113448.2| Arabidopsis thaliana ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome AT3G25520 (ATL5) mRNA, complete cds Length = 1254 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 525 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 584 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 585 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 644 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 645 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 704 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 705 ccagagaagttacaaactcacttcagtgcttacatcaagaa 745 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 849 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 893
>gb|AY365248.1| Cucumis sativus 60S ribosomal protein L5 mRNA, complete cds Length = 1171 Score = 97.6 bits (49), Expect = 4e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 ||||||||||| || |||||||| || |||||||||||||| ||||| |||||||||| Sbjct: 481 actggaaaccgcgtttttggtgctctgaagggagctttggatggtggattggacattcct 540 Query: 63 cacagtgacaagagatttgctggtt 87 |||||||||||||| |||||||||| Sbjct: 541 cacagtgacaagaggtttgctggtt 565 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 183 gaacccgagaagtaccaaactcacttcagtgagtacatcaagaaggg 229 ||||| ||||| || ||| |||||||||| ||||||||||||||||| Sbjct: 661 gaacctgagaaatatcaatctcacttcagcgagtacatcaagaaggg 707
>gb|BT000411.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA, complete cds Length = 969 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 463 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 522 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 523 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 582 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 583 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 642 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 643 ccagagaagttacaaactcacttcagtgcttacatcaagaa 683 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831
>gb|BT008705.1| Arabidopsis thaliana At3g25520 gene, complete cds Length = 906 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 463 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 522 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 523 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 582 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 583 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 642 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 643 ccagagaagttacaaactcacttcagtgcttacatcaagaa 683 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831
>gb|AY136319.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA, complete cds Length = 1161 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 522 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 581 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 582 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 641 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 642 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 701 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 702 ccagagaagttacaaactcacttcagtgcttacatcaagaa 742 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 846 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 890
>gb|AY065103.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA, complete cds Length = 1151 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 520 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 579 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 580 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 639 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 640 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 699 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 700 ccagagaagttacaaactcacttcagtgcttacatcaagaa 740 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 844 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 888
>gb|AY081701.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA, complete cds Length = 925 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 463 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 522 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 523 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 582 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 583 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 642 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 643 ccagagaagttacaaactcacttcagtgcttacatcaagaa 683 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831
>gb|AY054161.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds Length = 1108 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 510 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 569 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 570 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 629 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 630 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 689 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 690 ccagagaagttacaaactcacttcagtgcttacatcaagaa 730 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 834 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 878
>gb|AY186611.1| Arabidopsis thaliana ribosomal protein L5 mRNA, complete cds Length = 906 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 463 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 522 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 523 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 582 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 583 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 642 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 643 ccagagaagttacaaactcacttcagtgcttacatcaagaa 683 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 787 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 831
>emb|BX823967.1|CNS0A6W1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH10ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1076 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 495 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 554 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 555 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 614 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 615 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 674 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 675 ccagagaagttacaaactcacttcagtgcttacatcaagaa 715 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 819 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 863
>gb|AY087197.1| Arabidopsis thaliana clone 32753 mRNA, complete sequence Length = 1248 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 525 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 584 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 585 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 644 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 645 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 704 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 705 ccagagaagttacaaactcacttcagtgcttacatcaagaa 745 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 849 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 893
>gb|BT002427.1| Arabidopsis thaliana ribosomal protein, putative (At3g25520) mRNA, complete cds Length = 1117 Score = 97.6 bits (49), Expect = 4e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 6 ggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || ||| Sbjct: 520 ggaaaccgtgtgttcggtgctcttaagggtgctttggatggtggtcttgatatccctcac 579 Query: 66 agtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagattcac 125 |||||||||||||||||||| ||| | ||||| | ||| || |||||||| || ||| Sbjct: 580 agtgacaagagatttgctgggttccacaaggagaacaagcaacttgatgctgaaatccac 639 Query: 126 cgcaagtacatctatggagggcatgttgctgactacatgaggtcgctagcagatgaggaa 185 | || ||||||||||| || ||||| | ||||||||| | | | | ||| || || Sbjct: 640 aggaactacatctatggtggccatgtctcaaactacatgaagctgttgggagaagatgag 699 Query: 186 cccgagaagtaccaaactcacttcagtgagtacatcaagaa 226 || ||||||| |||||||||||||||| ||||||||||| Sbjct: 700 ccagagaagttacaaactcacttcagtgcttacatcaagaa 740 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 844 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 888
>dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescence-associated protein, complete cds Length = 1100 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 9 aaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccccacagt 68 |||||||||||||||||||| |||||||||||||| || ||| |||| ||||| |||||| Sbjct: 528 aaccgtgtgtttggtgcactcaagggagctttggatggaggtttggatattcctcacagt 587 Query: 69 gacaagagatttgctggttt 88 ||||| || ||||||||||| Sbjct: 588 gacaaaaggtttgctggttt 607 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcac 358 |||||||||||||||| ||||||||||| Sbjct: 849 cacaagaggtacaacctgaagaagctcac 877 Score = 40.1 bits (20), Expect = 7.3 Identities = 65/80 (81%) Strand = Plus / Plus Query: 198 caaactcacttcagtgagtacatcaagaagggaatctcagctgatgacatggaagcagtt 257 ||||||||||||||| | || |||||||| || || |||||||| || || | | || Sbjct: 717 caaactcacttcagtcaatatatcaagaaagggatagaagctgatggaattgaggaactt 776 Query: 258 tacaagaaggttcacgctgc 277 |||||||||||||| ||||| Sbjct: 777 tacaagaaggttcatgctgc 796
>dbj|AB016876.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21 Length = 44499 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttc 89 |||||||||||||||| ||||| || || || ||||||||||||||||||||||||||| Sbjct: 8148 agggagctttggacggaggtcttgatatccctcacagtgacaagagatttgctggtttc 8206 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagg 33 |||||||||||||||||||||||||| |||| Sbjct: 8004 actggaaaccgtgtgtttggtgcactcaagg 8034
>emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene Length = 1115 Score = 77.8 bits (39), Expect = 3e-11 Identities = 86/98 (87%), Gaps = 4/98 (4%) Strand = Plus / Plus Query: 11 ccgtgtgtttggtg-cacttaaggga-gctttggacggtggtctggacattccccacagt 68 |||||||||||||| |||| |||||| |||||||| || ||| |||| ||||| |||||| Sbjct: 473 ccgtgtgtttggtgacactcaagggaagctttggatggaggtttggatattcctcacagt 532 Query: 69 gacaagagatttgctggttt--caagaaggacgagaag 104 |||||||| ||||||||||| ||| |||||||||||| Sbjct: 533 gacaagaggtttgctggttttgcaacaaggacgagaag 570
>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2 Length = 84896 Score = 63.9 bits (32), Expect = 5e-07 Identities = 155/196 (79%) Strand = Plus / Minus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctggtttca 90 |||| |||||||| |||||||| || || || ||||||||||||||||||||||| ||| Sbjct: 56848 agggtgctttggatggtggtcttgatatccctcacagtgacaagagatttgctgggttcc 56789 Query: 91 agaaggacgagaagtctctggatgctgagattcaccgcaagtacatctatggagggcatg 150 | ||||| | ||| || |||||||| || ||| | || ||||||||||| || |||| Sbjct: 56788 acaaggagaacaagcaacttgatgctgaaatccacaggaactacatctatggtggccatg 56729 Query: 151 ttgctgactacatgaggtcgctagcagatgaggaacccgagaagtaccaaactcacttca 210 | | ||||||||| | | | | ||| || || || ||||||| ||||||||||||| Sbjct: 56728 tctcaaactacatgaagctgttgggagaagatgagccagagaagttacaaactcacttca 56669 Query: 211 gtgagtacatcaagaa 226 ||| ||||||||||| Sbjct: 56668 gtgcttacatcaagaa 56653 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 6 ggaaaccgtgtgtttggtgcacttaagg 33 |||||||||||||| ||||| ||||||| Sbjct: 56989 ggaaaccgtgtgttcggtgctcttaagg 56962
>dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5, partial cds Length = 399 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 321 cccaagactcacaagaggtacaaccccaagaagctcacctacgaggagaggaa 373 |||||||| |||||||||||||||| |||||||| ||||| || |||||||| Sbjct: 236 cccaagacacacaagaggtacaaccttaagaagctgacctatgaagagaggaa 288 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 121 ttcaccgcaagtacatctatggagggcatgttgctgactacatga 165 ||||||||||||| |||||||| || |||||||||| ||||||| Sbjct: 36 ttcaccgcaagtatatctatggtggccatgttgctgcatacatga 80 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 258 tacaagaaggttcacgctgccat 280 ||||||||||||||||||||||| Sbjct: 173 tacaagaaggttcacgctgccat 195
>gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence Length = 1274 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Plus Query: 3 actggaaaccgtgtgtttggtgcacttaagggagctttggacggtggtctggacattccc 62 |||||||| |||||||||||||| || ||||| || ||||| ||||| || || ||||| Sbjct: 571 actggaaatcgtgtgtttggtgctctcaagggtgcattggatggtggacttgatattcct 630 Query: 63 cacagtgacaagagatttgctggtttcaagaaggacgagaagtctctggatgctgagatt 122 || |||| ||||| |||||||| |||| || || ||| || ||||||||| || Sbjct: 631 catggtgagaagaggtttgctggattcagcaaagattccaagcaacttgatgctgaggtt 690 Query: 123 caccgcaagtacatctatggagggcatgttgc 154 ||||||||||| || ||||| || |||||||| Sbjct: 691 caccgcaagtatatatatggtggccatgttgc 722
>gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA Length = 1114 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 319 ctcccaagactcacaagaggtacaaccccaagaagctcacctacgaggagaggaa 373 |||||||||| |||||||||||||||| |||||||| || || || |||||||| Sbjct: 810 ctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaa 864 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 tacaagaaggttcacgctgccatccgcgc 286 |||||||||||||| |||||||| ||||| Sbjct: 749 tacaagaaggttcatgctgccatacgcgc 777
>gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence Length = 1161 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 319 ctcccaagactcacaagaggtacaaccccaagaagctcacctacgaggagaggaa 373 |||||||||| |||||||||||||||| |||||||| || || || |||||||| Sbjct: 833 ctcccaagacacacaagaggtacaaccttaagaagctgacttatgaagagaggaa 887 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 9 aaccgtgtgtttggtgcacttaagggagctttggacggtgg 49 ||||||||||||||||| || ||||| || ||||| ||||| Sbjct: 523 aaccgtgtgtttggtgctctcaagggtgcattggatggtgg 563 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 121 ttcaccgcaagtacatctatggagggcatgttgctg 156 ||||||||||||| |||||||| || || ||||||| Sbjct: 635 ttcaccgcaagtatatctatggtggccacgttgctg 670
>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017, complete sequence Length = 121127 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 31 agggagctttggacggtggtctggacattccccacagtgacaagagatttgctgg 85 ||||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct: 46778 agggagccttggatgggggtctggatattcctcacagtgataaaagatttgctgg 46724 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 348 aagaagctcacctacgaggagaggaaggc 376 |||||||||||||| |||||||||||||| Sbjct: 46135 aagaagctcacctatgaggagaggaaggc 46107
>emb|Z99296.2|SPAC3H5 S.pombe chromosome I cosmid c3H5 Length = 34284 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 109 tggatgctgagattcaccgcaagtacatctatggagggcatgttgctgactacatg 164 |||||| ||||| || |||||| || |||||||| || ||||||||||| |||||| Sbjct: 1230 tggatgatgagactctccgcaaatatatctatggtggccatgttgctgaatacatg 1285
>ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC580159 (LOC580159), mRNA Length = 1902 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 423 gccgacgatgacgaggatgacgag 446 |||||||||||||||||||||||| Sbjct: 1108 gccgacgatgacgaggatgacgag 1131 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gccgacgatgacgaggatga 442 |||||||||||||||||||| Sbjct: 1168 gccgacgatgacgaggatga 1187
>emb|AL031528.1|SPBC11C11 S.pombe chromosome II cosmid c11C11 Length = 22500 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Minus Query: 109 tggatgctgagattcaccgcaagtacatctatggagggcatgttgctgactacatg 164 |||||| ||||| || ||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 20270 tggatgatgagactctccgtaagtatatctatggtggtcatgttgctgaatacatg 20215
>ref|NM_001022319.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC11C11.09c), partial mRNA Length = 885 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 109 tggatgctgagattcaccgcaagtacatctatggagggcatgttgctgactacatg 164 |||||| ||||| || ||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 569 tggatgatgagactctccgtaagtatatctatggtggtcatgttgctgaatacatg 624
>ref|NM_001019604.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3H5.12c), partial mRNA Length = 885 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 109 tggatgctgagattcaccgcaagtacatctatggagggcatgttgctgactacatg 164 |||||| ||||| || |||||| || |||||||| || ||||||||||| |||||| Sbjct: 569 tggatgatgagactctccgcaaatatatctatggtggccatgttgctgaatacatg 624
>gb|U48270.1|SPU48270 Schizosaccharomyces pombe ribosomal protein L5 gene, complete cds Length = 1238 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 109 tggatgctgagattcaccgcaagtacatctatggagggcatgttgctgactacatg 164 |||||| ||||| || |||||| || |||||||| || ||||||||||| |||||| Sbjct: 605 tggatgatgagactctccgcaaatatatctatggtggccatgttgctgaatacatg 660
>dbj|AB016045.1| Schizosaccharomyces pombe mRNA for ribosomal protein L5 homolog, partial cds Length = 779 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 109 tggatgctgagattcaccgcaagtacatctatggagggcatgttgctgactacatg 164 |||||| ||||| || ||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 431 tggatgatgagactctccgtaagtatatctatggtggtcatgttgctgaatacatg 486
>ref|XM_500389.1| Yarrowia lipolytica CLIB122, YALI0B01540g predicted mRNA Length = 210 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 425 cgacgatgacgaggatgacgagt 447 ||||||||||||||||||||||| Sbjct: 186 cgacgatgacgaggatgacgagt 208
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacgagt 447 ||||||||||||||||||||||| Sbjct: 245173 cgacgatgacgaggatgacgagt 245151
>ref|XM_366233.1| Magnaporthe grisea 70-15 predicted protein (MG10452.4) partial mRNA Length = 738 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 413 tgctggtgccgccgacgatgacgaggatga 442 ||||| |||||||||||||||||| ||||| Sbjct: 423 tgctgctgccgccgacgatgacgacgatga 452 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 413 tgctggtgccgccgacgatgacgaggatga 442 ||||| |||||||||||||||||| ||||| Sbjct: 354 tgctgctgccgccgacgatgacgacgatga 383 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 tgctggtgccgccgacgatgacga 436 ||||| |||||||||||||||||| Sbjct: 630 tgctgctgccgccgacgatgacga 653
>dbj|AK221847.1| Arabidopsis thaliana mRNA for ribosomal protein, complete cds, clone: RAFL22-05-O03 Length = 517 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 189 gagaagtaccaaactcacttcagtgagtacatcaagaa 226 ||||||| |||||||||||||||| ||||||||||| Sbjct: 77 gagaagttacaaactcacttcagtgcttacatcaagaa 114 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 330 cacaagaggtacaaccccaagaagctcacctacgaggagaggaag 374 ||||||||||||||| ||||| || || ||||||||||||||| Sbjct: 218 cacaagaggtacaacttgaagaaacttacttacgaggagaggaag 262
>ref|XM_363564.1| Magnaporthe grisea 70-15 hypothetical protein (MG01490.4) partial mRNA Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 ccgccgacgatgacgaggatg 441 ||||||||||||||||||||| Sbjct: 281 ccgccgacgatgacgaggatg 261
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 150442 cgacgatgacgaggatgacga 150462
>emb|AJ296686.1|PAB296686 Picea abies ATC microsatellite DNA, clone EATC1A02 Length = 421 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 211 cgacgatgacgaggatgacga 191
>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence Length = 230349 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 gaggagaggaaggccagcctc 383 ||||||||||||||||||||| Sbjct: 69393 gaggagaggaaggccagcctc 69373
>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence Length = 154447 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 gaggagaggaaggccagcctc 383 ||||||||||||||||||||| Sbjct: 112671 gaggagaggaaggccagcctc 112651
>gb|AF513502.1| Homo sapiens STRA8 (STRA8) mRNA, complete cds Length = 993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 gaggagaggaaggccagcctc 383 ||||||||||||||||||||| Sbjct: 568 gaggagaggaaggccagcctc 588
>emb|AJ890137.1| Murid Herpesvirus 2 r138 gene (partial), r139 gene, r140 gene, r141 gene and r142 gene (partial) Length = 7462 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 3360 cgacgatgacgaggatgacga 3340
>ref|NM_182489.1| Homo sapiens STRA8 (LOC346673), mRNA Length = 993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 gaggagaggaaggccagcctc 383 ||||||||||||||||||||| Sbjct: 568 gaggagaggaaggccagcctc 588
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 13699 cgacgatgacgaggatgacga 13719
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 111746 cgacgatgacgaggatgacga 111766
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 190817 cgacgatgacgaggatgacga 190797
>ref|NM_132413.1| Drosophila melanogaster CG15295-RA (CG15295), mRNA Length = 2288 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 942 cgacgatgacgaggatgacga 962
>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence Length = 160367 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 gaggagaggaaggccagcctc 383 ||||||||||||||||||||| Sbjct: 92668 gaggagaggaaggccagcctc 92688
>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence Length = 174768 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 gaggagaggaaggccagcctc 383 ||||||||||||||||||||| Sbjct: 89850 gaggagaggaaggccagcctc 89870
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 131000 cgacgatgacgaggatgacga 130980
>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence Length = 282600 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 115917 cgacgatgacgaggatgacga 115897
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 cgacgatgacgaggatgacga 445 ||||||||||||||||||||| Sbjct: 129640 cgacgatgacgaggatgacga 129620
>dbj|AK115905.1| Ciona intestinalis cDNA, clone:cilv039f09, full insert sequence Length = 1057 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 21 ggtgcacttaagggagctttggacggtggtctggacattccccac 65 |||||| | ||||||||| ||||||||||| |||||||||||| Sbjct: 532 ggtgcaatgaagggagctgctgacggtggtctcgacattccccac 576
>gb|M60100.1|HRSMHDRA E.caballus MHC class II DR alpha chain (A2 haplotype) gene, 3' end Length = 2006 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 gtgagtacatcaagaagggaa 231 ||||||||||||||||||||| Sbjct: 926 gtgagtacatcaagaagggaa 906
>ref|XM_467072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ctcagctgatgacatggaag 252 |||||||||||||||||||| Sbjct: 367 ctcagctgatgacatggaag 386
>gb|AC113006.9| Mus musculus chromosome 16, clone RP23-332O12, complete sequence Length = 195941 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aagggaatctcagctgatga 244 |||||||||||||||||||| Sbjct: 107276 aagggaatctcagctgatga 107257
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 tgccgccgacgatgacgagg 438 |||||||||||||||||||| Sbjct: 302669 tgccgccgacgatgacgagg 302688
>ref|XM_754221.1| Ustilago maydis 521 hypothetical protein (UM03167.1) partial mRNA Length = 2610 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gacgatgacgaggatgacga 445 |||||||||||||||||||| Sbjct: 1729 gacgatgacgaggatgacga 1748
>ref|XM_754531.1| Ustilago maydis 521 hypothetical protein (UM03477.1) partial mRNA Length = 3900 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gacgatgacgaggatgacga 445 |||||||||||||||||||| Sbjct: 1000 gacgatgacgaggatgacga 1019
>ref|XM_380961.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00785.1) partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gacgatgacgaggatgacga 445 |||||||||||||||||||| Sbjct: 574 gacgatgacgaggatgacga 593
>gb|AF315713.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase mRNA, partial cds Length = 1767 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgagga 439 |||||||||||||||||||| Sbjct: 304 gccgccgacgatgacgagga 323
>emb|Z49967.1|CEF54C9 Caenorhabditis elegans Cosmid F54C9, complete sequence Length = 34842 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gcatgttgctgactacatga 165 |||||||||||||||||||| Sbjct: 16507 gcatgttgctgactacatga 16526
>gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome 12, complete sequence Length = 220746 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 agaggctcaacgccctcaac 407 |||||||||||||||||||| Sbjct: 125841 agaggctcaacgccctcaac 125822
>gb|BC037840.2| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 10, mRNA (cDNA clone IMAGE:4814643) Length = 1531 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tagcatggccaaatcaacca 312 |||||||||||||||||||| Sbjct: 466 tagcatggccaaatcaacca 447
>gb|AY043490.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmg1) mRNA, complete cds Length = 1827 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgagga 439 |||||||||||||||||||| Sbjct: 364 gccgccgacgatgacgagga 383
>gb|BC047625.1| Homo sapiens cDNA clone IMAGE:4795909 Length = 2187 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 gcagtttacaagaaggttcacgct 275 ||||||||||| |||||||||||| Sbjct: 1307 gcagtttacaataaggttcacgct 1284
>gb|BC036587.2| Homo sapiens cDNA clone IMAGE:4799072 Length = 2187 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 gcagtttacaagaaggttcacgct 275 ||||||||||| |||||||||||| Sbjct: 1307 gcagtttacaataaggttcacgct 1284
>gb|BC034036.1| Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 10, mRNA (cDNA clone IMAGE:4811633), partial cds Length = 4424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tagcatggccaaatcaacca 312 |||||||||||||||||||| Sbjct: 3352 tagcatggccaaatcaacca 3333
>gb|AC100771.2| Homo sapiens chromosome 11, clone RP11-159H22, complete sequence Length = 177819 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gcagtttacaagaaggttcacgct 275 |||||| ||||||||||||||||| Sbjct: 96318 gcagttcacaagaaggttcacgct 96341
>dbj|AB035927.1| Oryza sativa (japonica cultivar-group) GDH3 mRNA for glutamate dehydrogenase 3, complete cds Length = 1452 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ctcagctgatgacatggaag 252 |||||||||||||||||||| Sbjct: 393 ctcagctgatgacatggaag 412
>gb|AY039230.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmgr) mRNA, complete cds Length = 2301 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgagga 439 |||||||||||||||||||| Sbjct: 517 gccgccgacgatgacgagga 536
>ref|NM_063410.2| Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-5) (rpl-5) mRNA, complete cds Length = 969 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gcatgttgctgactacatga 165 |||||||||||||||||||| Sbjct: 611 gcatgttgctgactacatga 630
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgaggatgacgagt 447 ||||||||||| |||||||| ||||||| Sbjct: 24219597 gccgccgacgacgacgaggaggacgagt 24219624
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ctcagctgatgacatggaag 252 |||||||||||||||||||| Sbjct: 26259363 ctcagctgatgacatggaag 26259382
>gb|DQ022844.1| Oryza sativa (japonica cultivar-group) cytochrome P450 mRNA, complete cds Length = 1719 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 420 gccgccgacgatgacgaggatgacgagt 447 ||||||||||| |||||||| ||||||| Sbjct: 576 gccgccgacgacgacgaggaggacgagt 549
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 419 tgccgccgacgatgacgaggatgacgag 446 |||||||||||||||||| || |||||| Sbjct: 2243603 tgccgccgacgatgacgatgaagacgag 2243576
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tcgagaggctcaacgccctc 404 |||||||||||||||||||| Sbjct: 433367 tcgagaggctcaacgccctc 433386
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ctcagctgatgacatggaag 252 |||||||||||||||||||| Sbjct: 82204 ctcagctgatgacatggaag 82223
>gb|AE005004.1| Halobacterium sp. NRC-1 section 35 of 170 of the complete genome Length = 11030 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgagga 439 |||||||||||||||||||| Sbjct: 5077 gccgccgacgatgacgagga 5096
>dbj|AB125365.1| Corvus macrorhynchos DRD4 gene for dopamine receptor D4, exon 1, partial cds Length = 182 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 tgccgccgacgatgacgaggatga 442 ||||||||||||||| |||||||| Sbjct: 84 tgccgccgacgatgaggaggatga 61
>dbj|AK121238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096A02, full insert sequence Length = 1698 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 420 gccgccgacgatgacgaggatgacgagt 447 ||||||||||| |||||||| ||||||| Sbjct: 570 gccgccgacgacgacgaggaggacgagt 543
>dbj|AK103028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C02, full insert sequence Length = 1424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ctcagctgatgacatggaag 252 |||||||||||||||||||| Sbjct: 367 ctcagctgatgacatggaag 386
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgaggatgacgagt 447 ||||||||||| |||||||| ||||||| Sbjct: 24147803 gccgccgacgacgacgaggaggacgagt 24147830
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 420 gccgccgacgatgacgaggatgacgagt 447 ||||||||||| |||||||| ||||||| Sbjct: 104288 gccgccgacgacgacgaggaggacgagt 104315
>emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2190G12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157120 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 gcagtttacaagaaggttcacgct 275 ||||||||||| |||||||||||| Sbjct: 41675 gcagtttacaataaggttcacgct 41652 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,208,067 Number of Sequences: 3902068 Number of extensions: 4208067 Number of successful extensions: 76843 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76367 Number of HSP's gapped (non-prelim): 454 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
