Clone Information

BLAST Search Result

Clone Name	bags29l18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK101868.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	408	e-111
2	dbj\|AK065436.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	408	e-111
3	dbj\|AK060747.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
4	ref\|NM_193379.1\| Oryza sativa (japonica cultivar-group), predic...	240	5e-60
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	9e-34
6	dbj\|AP004225.2\| Oryza sativa (japonica cultivar-group) genomic D...	153	9e-34
7	gb\|BT018394.1\| Zea mays clone EL01N0319H09.d mRNA sequence	86	2e-13
8	dbj\|AK120053.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	2e-04
9	ref\|NM_124456.1\| Arabidopsis thaliana ATP binding AT5G50780 mRNA...	54	6e-04
10	ref\|XM_471768.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
11	ref\|NM_119797.2\| Arabidopsis thaliana ATP binding AT4G36290 mRNA...	50	0.009
12	gb\|BT011838.1\| Arabidopsis thaliana At4g36290 mRNA sequence	50	0.009
13	gb\|AF360314.1\| Arabidopsis thaliana unknown protein (At4g36290) ...	50	0.009
14	gb\|BT001940.1\| Arabidopsis thaliana clone C104679 unknown protei...	50	0.009
15	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.037
16	dbj\|AP003520.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.037
17	ref\|NM_118629.2\| Arabidopsis thaliana ATP binding AT4G24970 mRNA...	46	0.15
18	ref\|NM_119795.2\| Arabidopsis thaliana ATP binding AT4G36270 mRNA...	46	0.15
19	dbj\|AB023037.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	46	0.15
20	ref\|NM_121316.1\| Arabidopsis thaliana unknown protein AT5G13130 ...	44	0.57
21	ref\|XM_465564.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.57
22	ref\|XM_465563.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.57
23	ref\|XM_781647.1\| PREDICTED: Strongylocentrotus purpuratus simila...	44	0.57
24	emb\|AL161589.2\|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, ...	44	0.57
25	emb\|AL022141.1\|ATF23E13 Arabidopsis thaliana DNA chromosome 4, B...	44	0.57
26	dbj\|AK069003.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.57
27	dbj\|AK063552.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.57
28	ref\|NM_101768.2\| Arabidopsis thaliana ATP binding AT1G19100 mRNA...	42	2.3
29	gb\|AC109627.8\| Mus musculus chromosome 16, clone RP24-226M22, co...	42	2.3
30	gb\|AC113067.8\| Mus musculus chromosome 16, clone RP23-264I14, co...	42	2.3
31	gb\|AC102132.3\| Mus musculus chromosome 18, clone RP23-231D1, com...	42	2.3
32	emb\|Z99708.1\|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ...	42	2.3
33	dbj\|AK221449.1\| Arabidopsis thaliana mRNA for hypothetical prote...	42	2.3
34	emb\|CT571273.12\| Mouse DNA sequence from clone RP23-48L21 on chr...	42	2.3
35	ref\|XM_599981.2\| PREDICTED: Bos taurus similar to MORC family CW...	40	9.0
36	gb\|AC103357.10\| Mus musculus chromosome 14, clone RP24-201I14, c...	40	9.0
37	ref\|XM_644921.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.0
38	emb\|AL445923.10\| Human DNA sequence from clone RP11-117N4 on chr...	40	9.0
39	emb\|X78898.1\|SCXIVL S.cerevisiae DNA of chromosome XIV	40	9.0
40	emb\|X12734.1\|HVADH3 Barley alcohol dehydrogenase gene Adh3 (EC 1...	40	9.0
41	emb\|BX571863.1\| Photorhabdus luminescens subsp. laumondii TTO1 c...	40	9.0
42	emb\|AL049711.3\|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BA...	40	9.0
43	emb\|AL606470.15\| Mouse DNA sequence from clone RP23-293J11 on ch...	40	9.0
44	gb\|AC095353.9\| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Can...	40	9.0
45	gb\|AE001438.3\| Clostridium acetobutylicum ATCC 824 megaplasmid p...	40	9.0
46	emb\|BX649231.4\| Zebrafish DNA sequence from clone DKEY-225H23 in...	40	9.0
47	emb\|Z71477.1\|SCYNL201C S.cerevisiae chromosome XIV reading frame...	40	9.0
48	emb\|Z71476.1\|SCYNL200C S.cerevisiae chromosome XIV reading frame...	40	9.0

>dbj|AK101868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070D24, full
            insert sequence
          Length = 3160

 Score =  408 bits (206), Expect = e-111
 Identities = 349/399 (87%)
 Strand = Plus / Plus

                                                                        
Query: 19   tcgggcaatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattg 78
            ||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 732  tcgggcaatatggaaatggattcaaaactagcacaatgaggcttggagcagatgtgattg 791

                                                                        
Query: 79   tttttacacagaaccnnnnnnnctggacaccgacaagaagtattggtcttctttcttaca 138
            |||||||||| ||||       ||||   || ||||||||||| ||||||||||| ||||
Sbjct: 792  tttttacacaaaaccaaaataactgggtgccaacaagaagtatcggtcttctttcataca 851

                                                                        
Query: 139  catttctgatggaaacaggctgcgatgatgtattggtgccaacagtagactaccattacg 198
            ||||| |||||||||| |||||||||||||| ||||| |||||||| || || || || |
Sbjct: 852  catttttgatggaaactggctgcgatgatgttttggttccaacagttgattatcagtatg 911

                                                                        
Query: 199  atcttacaacttcttcgtatactcagctgttacgtcataatcagaaactcttctcttcta 258
            || |  ||||  |||||||||||||| || | |||||| ||||||| ||||||||||| |
Sbjct: 912  atatatcaacagcttcgtatactcagatgctgcgtcatgatcagaagctcttctcttcaa 971

                                                                        
Query: 259  atttggcgatccttttgaaatggtccccttttggtagcgaagctgagttgcttaaacaat 318
            |||| |||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 972  atttagcgatcctcttgaaatggtccccttttgctagtgaagctgagttgctcaaacaat 1031

                                                                        
Query: 319  tcgatgatatgggagagcacgggacaaagataattgtattcaacctctggttcaatgatg 378
            | |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct: 1032 ttgatgatatcggagagcatggaacaaaaataattgtattcaacctctggttcaatgatg 1091

                                                   
Query: 379  atggggacatggagcttgatttcaactccgataagaagg 417
            ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1092 atggggatatggagcttgatttcaactccgataagaagg 1130



 Score =  121 bits (61), Expect = 3e-24
 Identities = 196/241 (81%)
 Strand = Plus / Plus

                                                                        
Query: 415  aggatatcctcattactggggcacaaaagaaggtcaaaactaacaaacatgagaagcatg 474
            ||||||||||||||||||||||||| | |||||| || || |||||    || |||   |
Sbjct: 1481 aggatatcctcattactggggcacacaggaaggtgaataccaacaaggcagataaggtcg 1540

                                                                        
Query: 475  tgacgcaggactacattgcaaatcgacttcgtcattcacttagagcatatgcctccatct 534
              || ||| ||||| || ||| |||||| ||| |||| |||||||||||  | ||  |||
Sbjct: 1541 caacacagaactacgtttcaactcgactccgttattctcttagagcatacacatctgtct 1600

                                                                        
Query: 535  tgtatcttcgtgtacctgatagtttcaggataatcctgcgtggacaggatgtggaaccac 594
            |||| ||||   | ||||||| |||||| ||| || |||||||||| ||||||||| |||
Sbjct: 1601 tgtaccttcacattcctgataatttcagaatagtcttgcgtggacatgatgtggaatcac 1660

                                                                        
Query: 595  ataatgtagttaatgatttgatgtaccgtgaatgtgtgttgtataaaccacaaatcgctg 654
            |||||||| | |||||||||||||| | |||||| |||||||||||||||||||| ||||
Sbjct: 1661 ataatgtaataaatgatttgatgtatcctgaatgcgtgttgtataaaccacaaattgctg 1720

             
Query: 655  g 655
            |
Sbjct: 1721 g 1721

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>dbj|AK065436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024A18, full
            insert sequence
          Length = 3714

 Score =  408 bits (206), Expect = e-111
 Identities = 349/399 (87%)
 Strand = Plus / Plus

                                                                        
Query: 19   tcgggcaatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattg 78
            ||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 1372 tcgggcaatatggaaatggattcaaaactagcacaatgaggcttggagcagatgtgattg 1431

                                                                        
Query: 79   tttttacacagaaccnnnnnnnctggacaccgacaagaagtattggtcttctttcttaca 138
            |||||||||| ||||       ||||   || ||||||||||| ||||||||||| ||||
Sbjct: 1432 tttttacacaaaaccaaaataactgggtgccaacaagaagtatcggtcttctttcataca 1491

                                                                        
Query: 139  catttctgatggaaacaggctgcgatgatgtattggtgccaacagtagactaccattacg 198
            ||||| |||||||||| |||||||||||||| ||||| |||||||| || || || || |
Sbjct: 1492 catttttgatggaaactggctgcgatgatgttttggttccaacagttgattatcagtatg 1551

                                                                        
Query: 199  atcttacaacttcttcgtatactcagctgttacgtcataatcagaaactcttctcttcta 258
            || |  ||||  |||||||||||||| || | |||||| ||||||| ||||||||||| |
Sbjct: 1552 atatatcaacagcttcgtatactcagatgctgcgtcatgatcagaagctcttctcttcaa 1611

                                                                        
Query: 259  atttggcgatccttttgaaatggtccccttttggtagcgaagctgagttgcttaaacaat 318
            |||| |||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 1612 atttagcgatcctcttgaaatggtccccttttgctagtgaagctgagttgctcaaacaat 1671

                                                                        
Query: 319  tcgatgatatgggagagcacgggacaaagataattgtattcaacctctggttcaatgatg 378
            | |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct: 1672 ttgatgatatcggagagcatggaacaaaaataattgtattcaacctctggttcaatgatg 1731

                                                   
Query: 379  atggggacatggagcttgatttcaactccgataagaagg 417
            ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1732 atggggatatggagcttgatttcaactccgataagaagg 1770



 Score =  121 bits (61), Expect = 3e-24
 Identities = 196/241 (81%)
 Strand = Plus / Plus

                                                                        
Query: 415  aggatatcctcattactggggcacaaaagaaggtcaaaactaacaaacatgagaagcatg 474
            ||||||||||||||||||||||||| | |||||| || || |||||    || |||   |
Sbjct: 2121 aggatatcctcattactggggcacacaggaaggtgaataccaacaaggcagataaggtcg 2180

                                                                        
Query: 475  tgacgcaggactacattgcaaatcgacttcgtcattcacttagagcatatgcctccatct 534
              || ||| ||||| || ||| |||||| ||| |||| |||||||||||  | ||  |||
Sbjct: 2181 caacacagaactacgtttcaactcgactccgttattctcttagagcatacacatctgtct 2240

                                                                        
Query: 535  tgtatcttcgtgtacctgatagtttcaggataatcctgcgtggacaggatgtggaaccac 594
            |||| ||||   | ||||||| |||||| ||| || |||||||||| ||||||||| |||
Sbjct: 2241 tgtaccttcacattcctgataatttcagaatagtcttgcgtggacatgatgtggaatcac 2300

                                                                        
Query: 595  ataatgtagttaatgatttgatgtaccgtgaatgtgtgttgtataaaccacaaatcgctg 654
            |||||||| | |||||||||||||| | |||||| |||||||||||||||||||| ||||
Sbjct: 2301 ataatgtaataaatgatttgatgtatcctgaatgcgtgttgtataaaccacaaattgctg 2360

             
Query: 655  g 655
            |
Sbjct: 2361 g 2361

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>dbj|AK060747.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F03, full
           insert sequence
          Length = 1595

 Score =  278 bits (140), Expect = 2e-71
 Identities = 293/344 (85%)
 Strand = Plus / Plus

                                                                       
Query: 312 aaacaattcgatgatatgggagagcacgggacaaagataattgtattcaacctctggttc 371
           |||||||| |||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 1   aaacaatttgatgatatcggagagcatggaacaaaaataattgtattcaacctctggttc 60

                                                                       
Query: 372 aatgatgatggggacatggagcttgatttcaactccgataagaaggatatcctcattact 431
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatgatgatggggatatggagcttgatttcaactccgataagaaggatatcctcattact 120

                                                                       
Query: 432 ggggcacaaaagaaggtcaaaactaacaaacatgagaagcatgtgacgcaggactacatt 491
           |||||||| | |||||| || || |||||    || |||   |  || ||| ||||| ||
Sbjct: 121 ggggcacacaggaaggtgaataccaacaaggcagataaggtcgcaacacagaactacgtt 180

                                                                       
Query: 492 gcaaatcgacttcgtcattcacttagagcatatgcctccatcttgtatcttcgtgtacct 551
            ||| |||||| ||| |||| |||||||||||  | ||  ||||||| ||||   | |||
Sbjct: 181 tcaactcgactccgttattctcttagagcatacacatctgtcttgtaccttcacattcct 240

                                                                       
Query: 552 gatagtttcaggataatcctgcgtggacaggatgtggaaccacataatgtagttaatgat 611
           |||| |||||| ||| || |||||||||| ||||||||| ||||||||||| | ||||||
Sbjct: 241 gataatttcagaatagtcttgcgtggacatgatgtggaatcacataatgtaataaatgat 300

                                                       
Query: 612 ttgatgtaccgtgaatgtgtgttgtataaaccacaaatcgctgg 655
           |||||||| | |||||| |||||||||||||||||||| |||||
Sbjct: 301 ttgatgtatcctgaatgcgtgttgtataaaccacaaattgctgg 344

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>ref|NM_193379.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1980

 Score =  240 bits (121), Expect = 5e-60
 Identities = 246/290 (84%)
 Strand = Plus / Plus

                                                                       
Query: 28  atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttttacac 87
           |||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 680 atggaaatggattcaaaactagcacaatgaggcttggagcagatgtgattgtttttacac 739

                                                                       
Query: 88  agaaccnnnnnnnctggacaccgacaagaagtattggtcttctttcttacacatttctga 147
           | ||||       ||||   || ||||||||||| ||||||||||| ||||||||| |||
Sbjct: 740 aaaaccaaaataactgggtgccaacaagaagtatcggtcttctttcatacacatttttga 799

                                                                       
Query: 148 tggaaacaggctgcgatgatgtattggtgccaacagtagactaccattacgatcttacaa 207
           ||||||| |||||||||||||| ||||| |||||||| || || || || ||| |  |||
Sbjct: 800 tggaaactggctgcgatgatgttttggttccaacagttgattatcagtatgatatatcaa 859

                                                                       
Query: 208 cttcttcgtatactcagctgttacgtcataatcagaaactcttctcttctaatttggcga 267
           |  |||||||||||||| || | |||||| ||||||| ||||||||||| ||||| ||||
Sbjct: 860 cagcttcgtatactcagatgctgcgtcatgatcagaagctcttctcttcaaatttagcga 919

                                                             
Query: 268 tccttttgaaatggtccccttttggtagcgaagctgagttgcttaaacaa 317
           |||| ||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct: 920 tcctcttgaaatggtccccttttgctagtgaagctgagttgctcaaacaa 969



 Score =  153 bits (77), Expect = 9e-34
 Identities = 92/97 (94%)
 Strand = Plus / Plus

                                                                        
Query: 321  gatgatatgggagagcacgggacaaagataattgtattcaacctctggttcaatgatgat 380
            |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1072 gatgatatcggagagcatggaacaaaaataattgtattcaacctctggttcaatgatgat 1131

                                                 
Query: 381  ggggacatggagcttgatttcaactccgataagaagg 417
            ||||| |||||||||||||||||||||||||||||||
Sbjct: 1132 ggggatatggagcttgatttcaactccgataagaagg 1168



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                        
Query: 549  cctgatagtttcaggataatcctgcgtggacaggatgtggaaccacataatgtagttaat 608
            ||||||| |||||| ||| || |||||||||| ||||||||| ||||||||||| | |||
Sbjct: 1198 cctgataatttcagaatagtcttgcgtggacatgatgtggaatcacataatgtaataaat 1257

                                                           
Query: 609  gatttgatgtaccgtgaatgtgtgttgtataaaccacaaatcgctgg 655
            ||||||||||| | |||||| |||||||||||||||||||| |||||
Sbjct: 1258 gatttgatgtatcctgaatgcgtgttgtataaaccacaaattgctgg 1304

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 9e-34
 Identities = 92/97 (94%)
 Strand = Plus / Minus

                                                                            
Query: 321      gatgatatgggagagcacgggacaaagataattgtattcaacctctggttcaatgatgat 380
                |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 20493859 gatgatatcggagagcatggaacaaaaataattgtattcaacctctggttcaatgatgat 20493800

                                                     
Query: 381      ggggacatggagcttgatttcaactccgataagaagg 417
                ||||| |||||||||||||||||||||||||||||||
Sbjct: 20493799 ggggatatggagcttgatttcaactccgataagaagg 20493763



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                            
Query: 211      cttcgtatactcagctgttacgtcataatcagaaactcttctcttctaatttggcgatcc 270
                |||||||||||||| || | |||||| ||||||| ||||||||||| ||||| |||||||
Sbjct: 20495294 cttcgtatactcagatgctgcgtcatgatcagaagctcttctcttcaaatttagcgatcc 20495235

                                                               
Query: 271      ttttgaaatggtccccttttggtagcgaagctgagttgcttaaacaa 317
                | ||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct: 20495234 tcttgaaatggtccccttttgctagtgaagctgagttgctcaaacaa 20495188



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                            
Query: 549      cctgatagtttcaggataatcctgcgtggacaggatgtggaaccacataatgtagttaat 608
                ||||||| |||||| ||| || |||||||||| ||||||||| ||||||||||| | |||
Sbjct: 20493181 cctgataatttcagaatagtcttgcgtggacatgatgtggaatcacataatgtaataaat 20493122

                                                               
Query: 609      gatttgatgtaccgtgaatgtgtgttgtataaaccacaaatcgctgg 655
                ||||||||||| | |||||| |||||||||||||||||||| |||||
Sbjct: 20493121 gatttgatgtatcctgaatgcgtgttgtataaaccacaaattgctgg 20493075



 Score =  103 bits (52), Expect = 7e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                            
Query: 111      acaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgta 170
                ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| 
Sbjct: 20495491 acaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgtt 20495432

                                
Query: 171      ttggtgccaacagtag 186
                ||||| ||||||||||
Sbjct: 20495431 ttggttccaacagtag 20495416



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                            
Query: 28       atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttttacac 87
                |||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 20496064 atggaaatggattcaaaactagcacaatgaggcttggagcagatgtgattgtttttacac 20496005

                      
Query: 88       agaacc 93
                | ||||
Sbjct: 20496004 aaaacc 20495999



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 415      aggatatcctcattactggggcacaaaagaaggt 448
                ||||||||||||||||||||||||| | ||||||
Sbjct: 20493412 aggatatcctcattactggggcacacaggaaggt 20493379

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>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1156H12
          Length = 159509

 Score =  153 bits (77), Expect = 9e-34
 Identities = 92/97 (94%)
 Strand = Plus / Minus

                                                                         
Query: 321   gatgatatgggagagcacgggacaaagataattgtattcaacctctggttcaatgatgat 380
             |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 17681 gatgatatcggagagcatggaacaaaaataattgtattcaacctctggttcaatgatgat 17622

                                                  
Query: 381   ggggacatggagcttgatttcaactccgataagaagg 417
             ||||| |||||||||||||||||||||||||||||||
Sbjct: 17621 ggggatatggagcttgatttcaactccgataagaagg 17585



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                         
Query: 211   cttcgtatactcagctgttacgtcataatcagaaactcttctcttctaatttggcgatcc 270
             |||||||||||||| || | |||||| ||||||| ||||||||||| ||||| |||||||
Sbjct: 19116 cttcgtatactcagatgctgcgtcatgatcagaagctcttctcttcaaatttagcgatcc 19057

                                                            
Query: 271   ttttgaaatggtccccttttggtagcgaagctgagttgcttaaacaa 317
             | ||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct: 19056 tcttgaaatggtccccttttgctagtgaagctgagttgctcaaacaa 19010



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                         
Query: 549   cctgatagtttcaggataatcctgcgtggacaggatgtggaaccacataatgtagttaat 608
             ||||||| |||||| ||| || |||||||||| ||||||||| ||||||||||| | |||
Sbjct: 17003 cctgataatttcagaatagtcttgcgtggacatgatgtggaatcacataatgtaataaat 16944

                                                            
Query: 609   gatttgatgtaccgtgaatgtgtgttgtataaaccacaaatcgctgg 655
             ||||||||||| | |||||| |||||||||||||||||||| |||||
Sbjct: 16943 gatttgatgtatcctgaatgcgtgttgtataaaccacaaattgctgg 16897



 Score =  103 bits (52), Expect = 7e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                         
Query: 111   acaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgta 170
             ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| 
Sbjct: 19313 acaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgtt 19254

                             
Query: 171   ttggtgccaacagtag 186
             ||||| ||||||||||
Sbjct: 19253 ttggttccaacagtag 19238



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                         
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttttacac 87
             |||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 19886 atggaaatggattcaaaactagcacaatgaggcttggagcagatgtgattgtttttacac 19827

                   
Query: 88    agaacc 93
             | ||||
Sbjct: 19826 aaaacc 19821



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 415   aggatatcctcattactggggcacaaaagaaggt 448
             ||||||||||||||||||||||||| | ||||||
Sbjct: 17234 aggatatcctcattactggggcacacaggaaggt 17201

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>gb|BT018394.1| Zea mays clone EL01N0319H09.d mRNA sequence
          Length = 1497

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                       
Query: 582 gatgtggaaccacataatgtagttaatgatttgatgtaccgtgaatgtgtgttgtataaa 641
           |||||||| |||||||||||||||||||| |||||||| || || || ||||||||||||
Sbjct: 16  gatgtggagccacataatgtagttaatgacttgatgtatcgggagtgcgtgttgtataaa 75

                          
Query: 642 ccacaaatcgctgga 656
           || ||||| ||||||
Sbjct: 76  ccgcaaattgctgga 90

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>dbj|AK120053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K15, full
            insert sequence
          Length = 3158

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                    
Query: 24   caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgt 79
            |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 1478 caatatggaaatgggttcaaaaccagcacaatgagacttggagcagatgttattgt 1533

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>ref|NM_124456.1| Arabidopsis thaliana ATP binding AT5G50780 mRNA, complete cds
          Length = 2472

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttt 82
           |||||||| ||||| ||||| || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 721 caatatggtaatggattcaagactagtacaatgaggcttggagctgatgtcattgtttt 779

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>ref|XM_471768.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2400

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 21  gggcaatatggcaatggtttcaaaacaagcacaatgag 58
           ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 628 gggcaatatggaaatggtttcaagacaagtacaatgag 665

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>ref|NM_119797.2| Arabidopsis thaliana ATP binding AT4G36290 mRNA, complete cds
          Length = 2131

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
           |||||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 532 caatatggaaatggtttcaagacaagtacaatgagacttggagctgatg 580

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>gb|BT011838.1| Arabidopsis thaliana At4g36290 mRNA sequence
          Length = 1510

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
           |||||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 511 caatatggaaatggtttcaagacaagtacaatgagacttggagctgatg 559

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>gb|AF360314.1| Arabidopsis thaliana unknown protein (At4g36290) mRNA, complete cds
          Length = 2126

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
           |||||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 532 caatatggaaatggtttcaagacaagtacaatgagacttggagctgatg 580

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>gb|BT001940.1| Arabidopsis thaliana clone C104679 unknown protein (At4g36290)
           mRNA, complete cds
          Length = 1939

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
           |||||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 514 caatatggaaatggtttcaagacaagtacaatgagacttggagctgatg 562

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 28       atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgt 79
                |||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 15710822 atggaaatgggttcaaaaccagcacaatgagacttggagcagatgttattgt 15710771

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>dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021H10
          Length = 142659

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgt 79
             |||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 46460 atggaaatgggttcaaaaccagcacaatgagacttggagcagatgttattgt 46409

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>ref|NM_118629.2| Arabidopsis thaliana ATP binding AT4G24970 mRNA, complete cds
          Length = 2240

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttt 82
           |||||||||||||| || || || || |||||||| || ||||| ||||| ||||||||
Sbjct: 864 caatatggcaatgggtttaagactagtacaatgagacttggagctgatgttattgtttt 922

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>ref|NM_119795.2| Arabidopsis thaliana ATP binding AT4G36270 mRNA, complete cds
          Length = 1878

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 27  tatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttttac 85
           ||||| ||||||||||| ||||| || ||||| || ||||| ||||  |||||||||||
Sbjct: 460 tatggaaatggtttcaagacaagtaccatgagacttggagctgatgatattgtttttac 518

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>dbj|AB023037.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB16
          Length = 66087

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttt 82
             |||| ||||| ||||| || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 55550 atggtaatggattcaagactagtacaatgaggcttggagctgatgtcattgtttt 55604

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>ref|NM_121316.1| Arabidopsis thaliana unknown protein AT5G13130 mRNA, complete cds
          Length = 2121

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggct 61
           |||||||| ||||| |||||||| || |||||||||||
Sbjct: 565 caatatgggaatggattcaaaactagtacaatgaggct 602

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>ref|XM_465564.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1939

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgt 73
           |||||||| ||||||||||| ||||| |||||| | ||||| || |||||
Sbjct: 881 caatatggaaatggtttcaagacaagtacaatgcgactcggtgctgatgt 930

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>ref|XM_465563.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2762

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgt 73
           |||||||| ||||||||||| ||||| |||||| | ||||| || |||||
Sbjct: 655 caatatggaaatggtttcaagacaagtacaatgcgactcggtgctgatgt 704

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>ref|XM_781647.1| PREDICTED: Strongylocentrotus purpuratus similar to Xaa-Pro
           dipeptidase (X-Pro dipeptidase) (Proline dipeptidase)
           (Prolidase) (Imidodipeptidase) (LOC581659), mRNA
          Length = 1482

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 516 agagcatatgcctccatcttgtatct 541
           |||||||||| |||||||||||||||
Sbjct: 864 agagcatatgtctccatcttgtatct 839

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>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
          Length = 198750

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttttac 85
             |||| ||||||||||| ||||| || ||||| || ||||| ||||  |||||||||||
Sbjct: 45346 atggaaatggtttcaagacaagtaccatgagacttggagctgatgatattgtttttac 45289



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
             |||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 53516 atggaaatggtttcaagacaagtacaatgagacttggagctgatg 53472

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>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII
             project)
          Length = 94695

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatgtgattgtttttac 85
             |||| ||||||||||| ||||| || ||||| || ||||| ||||  |||||||||||
Sbjct: 68625 atggaaatggtttcaagacaagtaccatgagacttggagctgatgatattgtttttac 68568



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 28    atggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
             |||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 76795 atggaaatggtttcaagacaagtacaatgagacttggagctgatg 76751

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>dbj|AK069003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003D17, full
           insert sequence
          Length = 2761

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgt 73
           |||||||| ||||||||||| ||||| |||||| | ||||| || |||||
Sbjct: 654 caatatggaaatggtttcaagacaagtacaatgcgactcggtgctgatgt 703

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>dbj|AK063552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E04, full
           insert sequence
          Length = 1941

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 24  caatatggcaatggtttcaaaacaagcacaatgaggctcggagcggatgt 73
           |||||||| ||||||||||| ||||| |||||| | ||||| || |||||
Sbjct: 883 caatatggaaatggtttcaagacaagtacaatgcgactcggtgctgatgt 932

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>ref|NM_101768.2| Arabidopsis thaliana ATP binding AT1G19100 mRNA, complete cds
          Length = 2184

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 26  atatggcaatggtttcaaaacaagcacaatgag 58
           |||||| ||||||||||| || |||||||||||
Sbjct: 597 atatggaaatggtttcaagaccagcacaatgag 629

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>gb|AC109627.8| Mus musculus chromosome 16, clone RP24-226M22, complete sequence
          Length = 176288

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 141    tttctgatggaaacaggctgcgatg 165
              |||||| ||||||||||||||||||
Sbjct: 133188 tttctggtggaaacaggctgcgatg 133164

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>gb|AC113067.8| Mus musculus chromosome 16, clone RP23-264I14, complete sequence
          Length = 246802

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 141  tttctgatggaaacaggctgcgatg 165
            |||||| ||||||||||||||||||
Sbjct: 7843 tttctggtggaaacaggctgcgatg 7867

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>gb|AC102132.3| Mus musculus chromosome 18, clone RP23-231D1, complete sequence
          Length = 183544

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 570    ctgcgtggacaggatgtggaa 590
              |||||||||||||||||||||
Sbjct: 162890 ctgcgtggacaggatgtggaa 162910

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>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2
          Length = 198354

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 28     atggcaatggtttcaaaacaagcacaatgaggctcggagcggatg 72
              |||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 197211 atggaaatggtttcaagacaagtacaatgagacttggagctgatg 197255

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>dbj|AK221449.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL07-19-L03
          Length = 2602

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 26   atatggcaatggtttcaaaacaagcacaatgag 58
            |||||| ||||||||||| || |||||||||||
Sbjct: 1005 atatggaaatggtttcaagaccagcacaatgag 1037

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>emb|CT571273.12| Mouse DNA sequence from clone RP23-48L21 on chromosome 16, complete
             sequence
          Length = 142519

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 141   tttctgatggaaacaggctgcgatg 165
             |||||| ||||||||||||||||||
Sbjct: 52399 tttctggtggaaacaggctgcgatg 52423

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>ref|XM_599981.2| PREDICTED: Bos taurus similar to MORC family CW-type zinc finger 1
           (LOC521713), mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 15  tttntcgggcaatatggcaatgg 37
           ||| |||||||||||||||||||
Sbjct: 196 tttatcgggcaatatggcaatgg 218

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>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence
          Length = 143401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tcattactggggcacaaaag 443
             ||||||||||||||||||||
Sbjct: 57668 tcattactggggcacaaaag 57649

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>ref|XM_644921.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (252.t00011)
           partial mRNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 aagaagtattggtcttcttt 132
           ||||||||||||||||||||
Sbjct: 788 aagaagtattggtcttcttt 769

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>emb|AL445923.10| Human DNA sequence from clone RP11-117N4 on chromosome 13 Contains a
             ribosomal protein S10 (RPS10) pseudogene, complete
             sequence
          Length = 154726

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   gtcaaaactaacaaacatga 466
             ||||||||||||||||||||
Sbjct: 97585 gtcaaaactaacaaacatga 97566

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>emb|X78898.1|SCXIVL S.cerevisiae DNA of chromosome XIV
          Length = 35161

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   aagtattggtcttctttctt 135
             ||||||||||||||||||||
Sbjct: 24922 aagtattggtcttctttctt 24941

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>emb|X12734.1|HVADH3 Barley alcohol dehydrogenase gene Adh3 (EC 1.1.1.1)
          Length = 2269

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   gtttcaaaacaagcacaatg 56
            ||||||||||||||||||||
Sbjct: 1240 gtttcaaaacaagcacaatg 1259

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>emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             5/17
          Length = 349318

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ttgcttaaacaattcgatga 325
             ||||||||||||||||||||
Sbjct: 64820 ttgcttaaacaattcgatga 64839

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>emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15
          Length = 123209

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ggatgtgattgtttttacacagaa 91
             |||||||||||||||||| |||||
Sbjct: 63980 ggatgtgattgtttttactcagaa 63957

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>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a
              Friedreich ataxia protein (Frda) pseudogene, complete
              sequence
          Length = 203970

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    ttcaacctctggttcaatga 376
              ||||||||||||||||||||
Sbjct: 133615 ttcaacctctggttcaatga 133634

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>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 600    gtagttaatgatttgatgta 619
              ||||||||||||||||||||
Sbjct: 136256 gtagttaatgatttgatgta 136237

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>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete
             sequence
          Length = 192000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   tcaacctctggttcaatgat 377
             ||||||||||||||||||||
Sbjct: 65649 tcaacctctggttcaatgat 65668

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>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20,
            complete sequence
          Length = 153569

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 68   ggatgtgattgtttttacacagaa 91
            ||||||| ||||||||||||||||
Sbjct: 9552 ggatgtgtttgtttttacacagaa 9529

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>emb|Z71477.1|SCYNL201C S.cerevisiae chromosome XIV reading frame ORF YNL201c
          Length = 3256

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  aagtattggtcttctttctt 135
            ||||||||||||||||||||
Sbjct: 3050 aagtattggtcttctttctt 3069

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>emb|Z71476.1|SCYNL200C S.cerevisiae chromosome XIV reading frame ORF YNL200c
          Length = 1722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 aagtattggtcttctttctt 135
           ||||||||||||||||||||
Sbjct: 303 aagtattggtcttctttctt 322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,548,368
Number of Sequences: 3902068
Number of extensions: 5548368
Number of successful extensions: 112516
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112353
Number of HSP's gapped (non-prelim): 157
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

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BLAST Search Result