ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29l13 |
|---|---|
| Clone Library Name | barley_pub |
>SLY1_ARATH (Q9SL48) SEC1-family transport protein SLY1 (AtSLY1)| Length = 627 Score = 258 bits (659), Expect = 8e-69 Identities = 137/190 (72%), Positives = 158/190 (83%), Gaps = 3/190 (1%) Frame = +1 Query: 4 TDLIGN--TKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLV 177 TDLIGN T+HLMN V SLPELTERKK+IDKHTNIATALLG IKERS+D + + E+DM++ Sbjct: 341 TDLIGNIHTEHLMNTVKSLPELTERKKVIDKHTNIATALLGQIKERSIDAFTKKESDMMM 400 Query: 178 NGTVDRNMLLSLLRGKGTKEDKLRLAVTYLLSFEAPLASELEQVEAALRESEVDMSAFQY 357 G +DR L++ L+GKGTK DKLR A+ YL+S E SE+E VEAAL E+E D SAFQY Sbjct: 401 RGGIDRTELMAALKGKGTKMDKLRFAIMYLISTETINQSEVEAVEAALNEAEADTSAFQY 460 Query: 358 VKRIKSLNTQFAAAS-STASRSNIVDWAEKLYGQSISAVTAGVKNLLSDGRQLALTRTVE 534 VK+IKSLN FAA S ++ASRSNIVDWAEKLYGQSISAVTAGVKNLLS +QLA+TRTVE Sbjct: 461 VKKIKSLNASFAATSANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDQQLAVTRTVE 520 Query: 535 ALMEGKPNPE 564 AL EGKPNPE Sbjct: 521 ALTEGKPNPE 530
>SCFD1_HUMAN (Q8WVM8) Sec1 family domain-containing protein 1 (Syntaxin-binding| protein 1-like 2) (Sly1p) Length = 641 Score = 121 bits (303), Expect = 2e-27 Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 3/191 (1%) Frame = +1 Query: 1 VTDLIGNTKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLVN 180 ++ L NT L +AV+SLPEL E+K++ID HTN+ATA+L HIK R LD Y+E E ++ Sbjct: 371 ISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSK 430 Query: 181 GTVDRNML-LSLLRGKGTKEDKLRLAVTYLLSF-EAPLASELEQVEAALRESEVDMSAFQ 354 T+D+++L + GT EDK+RL + Y +S +AP ++LEQ + AL ++ +++ Q Sbjct: 431 TTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQ 490 Query: 355 YVKRIKSLNTQFAA-ASSTASRSNIVDWAEKLYGQSISAVTAGVKNLLSDGRQLALTRTV 531 Y+K+ K+ +A AS ++ + + ++ V GVKNL+ + L +TR + Sbjct: 491 YIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRIL 550 Query: 532 EALMEGKPNPE 564 + LME K NPE Sbjct: 551 DNLMEMKSNPE 561
>SCFD1_RAT (Q62991) Sec1 family domain-containing protein 1 (Syntaxin-binding| protein 1-like 2) (Vesicle transport-related protein Ra410) (Sly1p) Length = 637 Score = 119 bits (298), Expect = 6e-27 Identities = 77/194 (39%), Positives = 116/194 (59%), Gaps = 6/194 (3%) Frame = +1 Query: 1 VTDLIGNTKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLVN 180 ++ L NT L +AV+SLPEL E+K++ID HTN+ATA+L HIK R LD Y+E E ++ Sbjct: 367 ISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSK 426 Query: 181 GTVDRNMLLSLL-RGKGTKEDKLRLAVTYLLSF-EAPLASELEQVEAALRESEVDMSAFQ 354 T+D+++L + GT EDK+RL + Y +S +AP +LEQ + AL ++ ++S Q Sbjct: 427 TTLDKSLLDVISDPDAGTPEDKMRLFLIYYISAQQAPSEVDLEQYKKALTDAGCNLSPLQ 486 Query: 355 YVKRIKSLNTQFAAASSTASRSNIVDWAEKLYGQSISA----VTAGVKNLLSDGRQLALT 522 Y+K+ K+ AS+ AS N L + ++ V GVKNL+ + L +T Sbjct: 487 YIKQWKAFAKM---ASTPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVT 543 Query: 523 RTVEALMEGKPNPE 564 R ++ LME K NPE Sbjct: 544 RILDNLMEMKSNPE 557
>SCFD1_MOUSE (Q8BRF7) Sec1 family domain-containing protein 1 (Syntaxin-binding| protein 1-like 2) Length = 639 Score = 119 bits (298), Expect = 6e-27 Identities = 77/194 (39%), Positives = 116/194 (59%), Gaps = 6/194 (3%) Frame = +1 Query: 1 VTDLIGNTKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLVN 180 ++ L NT L +AV+SLPEL E+K++ID HTN+ATA+L HIK R LD Y+E E ++ Sbjct: 369 ISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSK 428 Query: 181 GTVDRNMLLSLL-RGKGTKEDKLRLAVTYLLSF-EAPLASELEQVEAALRESEVDMSAFQ 354 T+D+++L + GT EDK+RL + Y +S +AP +LEQ + AL ++ ++S Q Sbjct: 429 TTLDKSLLDVISDPDAGTPEDKMRLFLIYYISAQQAPSEVDLEQYKKALTDAGCNLSPLQ 488 Query: 355 YVKRIKSLNTQFAAASSTASRSNIVDWAEKLYGQSISA----VTAGVKNLLSDGRQLALT 522 Y+K+ K+ AS+ AS N L + ++ V GVKNL+ + L +T Sbjct: 489 YIKQWKAFAKM---ASTPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVT 545 Query: 523 RTVEALMEGKPNPE 564 R ++ LME K NPE Sbjct: 546 RILDNLMEMKSNPE 559
>SLY1_DROME (Q24179) Sly1 protein homolog| Length = 657 Score = 105 bits (262), Expect = 9e-23 Identities = 65/163 (39%), Positives = 93/163 (57%), Gaps = 5/163 (3%) Frame = +1 Query: 22 TKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLVNGTVDRNM 201 T L NAVNSLP+L E+K++ID HT IATA+L IK R LD ++E E ++ T+DR + Sbjct: 363 TARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKARRLDSFFEIEEKVMSKQTLDRPL 422 Query: 202 LLSLLRGK-GTKEDKLRLAVTYLLSFEAPLASELEQVEAALRESEVDMSAFQYVKRIKSL 378 L L G+ G EDKLRL + Y + + SE E+++ AL+ + D++A YV+R K + Sbjct: 423 LDLLRDGEFGQAEDKLRLYIIYFICAQQLPESEQERLKEALQAAGCDLTALAYVQRWKGI 482 Query: 379 NTQFAAASST----ASRSNIVDWAEKLYGQSISAVTAGVKNLL 495 + + S + V KL Q S V GVKNL+ Sbjct: 483 MNRSPSISQATQYEGGGTKTVSMFTKLVSQGSSFVMEGVKNLV 525
>SLY1_DROVI (O18637) Sly1 protein homolog| Length = 656 Score = 103 bits (257), Expect = 3e-22 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 6/164 (3%) Frame = +1 Query: 22 TKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLVNGTVDRNM 201 T L +AVNSLP+L E+K++ID HT IATA+L IK R LD Y+E E ++ T+D+ Sbjct: 359 TAMLTSAVNSLPQLMEKKRLIDMHTKIATAILNCIKARRLDSYFEIEEKIMSKQTLDK-P 417 Query: 202 LLSLLRGK--GTKEDKLRLAVTYLLSFEAPLASELEQVEAALRESEVDMSAFQYVKRIKS 375 LL LLR G EDKLRL + Y + + ELE++ AL+ + D++A YV+R KS Sbjct: 418 LLELLRDAEFGQPEDKLRLYIIYYICAQQLPEPELERLREALQSAGCDLTALAYVQRWKS 477 Query: 376 LNTQFAAASST----ASRSNIVDWAEKLYGQSISAVTAGVKNLL 495 + + + S + V KL Q S V GVKNL+ Sbjct: 478 IMNRSPSISQATQYEGGGTRTVSMFTKLVSQGSSFVMEGVKNLV 521
>SLY1_YEAST (P22213) Protein SLY1 (Suppressor of loss of YPT1 protein 1)| Length = 666 Score = 79.7 bits (195), Expect = 5e-15 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 18/194 (9%) Frame = +1 Query: 19 NTKHLMNAVNSLPELTERKKMIDKHTNIATALLGHIKERSLDGYYECENDMLVNGTVDRN 198 +T + V LPELT +K ID H NI ALL ++ +SLD ++E E D T R+ Sbjct: 376 DTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQD--PGSTKTRS 433 Query: 199 MLLSLLRGKGTK--EDKLR-LAVTYLLSFEAPLASELEQVEAALRESEVDMSAFQYVKRI 369 L +L+ T EDKLR V YL S ++ VE +E++ D++A +YV ++ Sbjct: 434 RFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINALKYVYKL 493 Query: 370 KSL---------------NTQFAAASSTASRSNIVDWAEKLYGQSISAVTAGVKNLLSDG 504 + + A S + S I E + ++ +G+K LL + Sbjct: 494 REFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEK 553 Query: 505 RQLALTRTVEALME 546 + + +T V+A+M+ Sbjct: 554 KTIPITNVVDAIMD 567
>Y1069_PYRHO (O58796) UPF0130 protein PH1069| Length = 196 Score = 32.3 bits (72), Expect = 0.96 Identities = 24/90 (26%), Positives = 44/90 (48%) Frame = +1 Query: 271 SFEAPLASELEQVEAALRESEVDMSAFQYVKRIKSLNTQFAAASSTASRSNIVDWAEKLY 450 +FE L +E ALR+ EVD +K+I S+ F SS + R ++++ + Sbjct: 6 NFERAKKEALMSLEIALRKGEVDEDIIPLLKKINSIENYF-TTSSCSGRISVMEMPH--F 62 Query: 451 GQSISAVTAGVKNLLSDGRQLALTRTVEAL 540 G ++A G + R+++L +EA+ Sbjct: 63 GDKVNAKWLGKWH-----REVSLYEVLEAI 87
>Y1098_PYRFU (Q8U1V7) UPF0130 protein PF1098| Length = 196 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +1 Query: 271 SFEAPLASELEQVEAALRESEVDMSAFQYVKRIKSLNTQFAAASSTASRSNIVDWAEKLY 450 +FE L +E ALR+ EVD +K+I SL+ F SS + R ++++ + Sbjct: 6 NFERAKKEALISLEIALRKGEVDEDIIPLLKKINSLDNYF-TTSSCSGRISVMEMPH--F 62 Query: 451 GQSISAVTAG 480 G ++A G Sbjct: 63 GDKVNAKWLG 72
>ACCA_PROMP (Q7V2E6) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 335 Score = 31.6 bits (70), Expect = 1.6 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%) Frame = +1 Query: 262 YLLSFEAPLAS---ELEQVEAALRESEVDMSAFQYVKRIKSLNTQ 387 YLL FE PL ++EQ+ R+SEVD+S Q + ++++L T+ Sbjct: 5 YLLDFEKPLVELEKQIEQIRELARDSEVDVS--QQLLQLETLATR 47
>ACCA_PROMA (Q7VD49) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 329 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = +1 Query: 250 LAVTYLLSFEAPLAS---ELEQVEAALRESEVDMS 345 +A YLL FE PL ++EQ+ R+SEVD+S Sbjct: 1 MARRYLLEFEKPLVELEKQIEQIRELARDSEVDVS 35
>VMDL1_HUMAN (Q8NFU1) Bestrophin-2 (Vitelliform macular dystrophy 2-like protein| 1) Length = 509 Score = 30.8 bits (68), Expect = 2.8 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -2 Query: 325 PAAQPQP-ALVQMPVAPQRIADR*QPAGAYPPWCPS 221 P A P+P L+ PV P I P G PPW PS Sbjct: 464 PPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPS 499
>ASCL2_RAT (P19360) Achaete-scute homolog 2| Length = 260 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Frame = -2 Query: 370 LSSSHTGMQTCL---LLTPAAQPQPALVQMPVAPQRIADR*QPAGAYPPWCPSL*VDSAA 200 L + H ++ L LLTPA +P Q +P + C S D Sbjct: 173 LLAEHDAVRAALSGGLLTPATRPSDVCTQPSASPASASLS----------CTSTSPDRLG 222 Query: 199 CSDPQYHSRAYHSRTHSIHPETSP 128 CS+P AY S S ET P Sbjct: 223 CSEPASPRSAYSSEDSSCEGETYP 246
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 30.0 bits (66), Expect = 4.8 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 12/154 (7%) Frame = +1 Query: 61 LTERKKMIDKHTNIATALLGHIKERSLDGYYE--CENDMLVNGTVDRNMLLSLLRGKGTK 234 LT+ K I++ A +L IKE + YY+ CE ++ NG D + Sbjct: 33 LTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSD------------LE 80 Query: 235 EDKLRLAVTYLLSFEAPLASEL-EQVEAALRE--------SEVDMSAFQYVKRIKSLNTQ 387 D+ ++ + F+ L +EL ++ E+ ++E E D + + +L Sbjct: 81 HDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEY 140 Query: 388 FAAASSTASRSNIVDWAEKLYGQSIS-AVTAGVK 486 +A D AEK G+S+S A++ G K Sbjct: 141 YAQIGDK-------DNAEKTLGKSLSKAISTGAK 167
>ACCA_PROMM (Q7V6D6) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 329 Score = 29.6 bits (65), Expect = 6.2 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = +1 Query: 250 LAVTYLLSFEAPLAS---ELEQVEAALRESEVDMS 345 +A YL FE PL ++EQ+ R+SEVD+S Sbjct: 1 MARRYLFEFEKPLVELEQQIEQIRELARDSEVDVS 35
>EFTS_LEGPA (Q5X4J8) Elongation factor Ts (EF-Ts)| Length = 292 Score = 29.6 bits (65), Expect = 6.2 Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Frame = +1 Query: 94 TNIATALLGHIKERSLDGYYECENDML-VNGTVDRNMLLSLLRGKGTKEDKL-RLAVTYL 267 + I+ AL+ ++ER+ G EC+ ++ NG +++ ++ G+ + K R+A + Sbjct: 2 STISAALVMQLRERTGAGMMECKKFLIATNGDIEQAIIEMRKAGQAKADKKADRVAAEGI 61 Query: 268 LSFEAPLASELEQVEAALRE--SEVDMSAFQYVKRIKSLNTQFAAASSTASRSNIVDWAE 441 + +A ++ A + E SE D +V R ++ T FA A + A+ +N+ E Sbjct: 62 I----VIARSSDERTAVMLEINSETD-----FVARDENF-TNFANAVADAALTNLPKNIE 111 Query: 442 KLYGQSISAVT 474 L Q++S+ T Sbjct: 112 DLSNQALSSGT 122
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 394 QQIACSTTLSSSHTGMQTCLLLTPAAQ 314 QQ++CS S G+QTC LL P +Q Sbjct: 1521 QQVSCSCREGYSGDGIQTCKLLDPCSQ 1547
>VGLH_MCMVS (P30673) Glycoprotein H precursor| Length = 725 Score = 29.6 bits (65), Expect = 6.2 Identities = 23/101 (22%), Positives = 38/101 (37%) Frame = +1 Query: 262 YLLSFEAPLASELEQVEAALRESEVDMSAFQYVKRIKSLNTQFAAASSTASRSNIVDWAE 441 Y +S + PL+ + ++ VD++ + F +S S + W E Sbjct: 431 YRMSLKIPLSGSMRRILI-----RVDLTVRTQLNESSVARRHFVLLTSMCSPREQISWGE 485 Query: 442 KLYGQSISAVTAGVKNLLSDGRQLALTRTVEALMEGKPNPE 564 L A + +S GR+ +V ALME PE Sbjct: 486 LLMNPQRGAPSEIYSPCVSGGRRDYTGPSVRALMESAHRPE 526
>YDIH_SHIFL (P64478) Hypothetical protein ydiH| Length = 89 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1 Query: 256 VTYLLSFEAPLASELEQVEAA---LRESEVDMSAFQYVKRIKSLNTQFA 393 V L E ++++L+ + A LR + ++S QY+KR+K L +FA Sbjct: 18 VQVLSKSEDAMSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFA 66
>YDIH_ECOLI (P64476) Hypothetical protein ydiH| Length = 89 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1 Query: 256 VTYLLSFEAPLASELEQVEAA---LRESEVDMSAFQYVKRIKSLNTQFA 393 V L E ++++L+ + A LR + ++S QY+KR+K L +FA Sbjct: 18 VQVLSKSEDAMSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFA 66
>YDIH_ECO57 (P64477) Hypothetical protein ydiH| Length = 89 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1 Query: 256 VTYLLSFEAPLASELEQVEAA---LRESEVDMSAFQYVKRIKSLNTQFA 393 V L E ++++L+ + A LR + ++S QY+KR+K L +FA Sbjct: 18 VQVLSKSEDAMSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFA 66
>Y917_PYRAB (Q9V074) UPF0130 protein PYRAB09170| Length = 194 Score = 29.3 bits (64), Expect = 8.1 Identities = 24/90 (26%), Positives = 42/90 (46%) Frame = +1 Query: 271 SFEAPLASELEQVEAALRESEVDMSAFQYVKRIKSLNTQFAAASSTASRSNIVDWAEKLY 450 +FE L +E ALR EVD +K+I F SS + R +I++ + + Sbjct: 6 NFERAKKEALISLEIALRRGEVDEDIIPLLKKINEKPNYF-TTSSCSGRISIMEMPD--F 62 Query: 451 GQSISAVTAGVKNLLSDGRQLALTRTVEAL 540 G ++A G + R+++L +EA+ Sbjct: 63 GDKVNAKWLGKWH-----REVSLDEVLEAI 87
>TRKA1_METMA (P39449) Trk system potassium uptake protein trkA homolog 1| (K(+)-uptake protein trkA homolog 1) Length = 448 Score = 29.3 bits (64), Expect = 8.1 Identities = 19/62 (30%), Positives = 33/62 (53%) Frame = +1 Query: 76 KMIDKHTNIATALLGHIKERSLDGYYECENDMLVNGTVDRNMLLSLLRGKGTKEDKLRLA 255 K+IDK N ++ H K R ++ EN +++NG +SLLR + ++ + +A Sbjct: 247 KLIDKEENADLRIIEHSKSRCIEVAEILENALVLNGD---GTDVSLLREENIEDMDVVVA 303 Query: 256 VT 261 VT Sbjct: 304 VT 305
>PEN_DROME (O61345) Protein penguin| Length = 737 Score = 29.3 bits (64), Expect = 8.1 Identities = 23/76 (30%), Positives = 36/76 (47%) Frame = +1 Query: 94 TNIATALLGHIKERSLDGYYECENDMLVNGTVDRNMLLSLLRGKGTKEDKLRLAVTYLLS 273 TN+ ++LG +K +LD N LV+ + ++L LR E+KL VT + Sbjct: 300 TNMKASILGSVKA-NLD---HVANKQLVDSALVHAVMLEYLRACDEDEEKLEETVTAFAA 355 Query: 274 FEAPLASELEQVEAAL 321 + S E EAA+ Sbjct: 356 LVPHMLSTKEGSEAAV 371 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.129 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,671,528 Number of Sequences: 219361 Number of extensions: 1609523 Number of successful extensions: 3416 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
