ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29k08 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 309 bits (791), Expect = 3e-84 Identities = 149/163 (91%), Positives = 159/163 (97%) Frame = +3 Query: 6 KGMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYDKE 185 +GML VYN+LS +GKKEF KAYSASFYPCM+ILYECYEDVASGSEIRSVVLAGRRFY+KE Sbjct: 351 QGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKE 410 Query: 186 GLPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSY 365 GLPAFPMGKIDQTRMWKVGE+VRSTRP GDLGPL+PFTAGV+VA+MMAQIEVLRKKGHSY Sbjct: 411 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSY 470 Query: 366 SEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWA 494 SEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWA Sbjct: 471 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWA 513
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 305 bits (780), Expect = 6e-83 Identities = 148/163 (90%), Positives = 156/163 (95%) Frame = +3 Query: 6 KGMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYDKE 185 KGML +YNSLS EGKK+F AYSAS+YP MDILYECYEDVASGSEIRSVVLAGRRFY+KE Sbjct: 367 KGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKE 426 Query: 186 GLPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSY 365 GLPAFPMGKIDQTRMWKVGEKVRS RP GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSY Sbjct: 427 GLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSY 486 Query: 366 SEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWA 494 SEIINESVIE+VDSLNPFMHARGV+FMVDNCSTTARLGSRKWA Sbjct: 487 SEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWA 529
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 303 bits (775), Expect = 2e-82 Identities = 146/163 (89%), Positives = 155/163 (95%) Frame = +3 Query: 6 KGMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYDKE 185 +GML VYNSLS EGKK+F AYSASFYPCM+ILYECYEDV SGSEIRSVVLAGRRFY+KE Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420 Query: 186 GLPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSY 365 GLPAFPMG IDQTRMWKVGE+VR +RP GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSY Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSY 480 Query: 366 SEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWA 494 SEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWA Sbjct: 481 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWA 523
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 62.0 bits (149), Expect = 8e-10 Identities = 30/58 (51%), Positives = 40/58 (68%) Frame = +3 Query: 318 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKW 491 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDW 333
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 58.5 bits (140), Expect = 9e-09 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = +3 Query: 318 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKW 491 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDW 327 Score = 29.3 bits (64), Expect = 6.0 Identities = 21/89 (23%), Positives = 39/89 (43%) Frame = +3 Query: 3 KKGMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYDK 182 K GM +Y++ S ++ Y + + YE +G+E + + + + Sbjct: 306 KYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETKRSLEFNSQPDYR 365 Query: 183 EGLPAFPMGKIDQTRMWKVGEKVRSTRPD 269 E L + I +WKVG++VR RP+ Sbjct: 366 EKLEK-ELDTIRNMEIWKVGKEVRKLRPE 393
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 55.5 bits (132), Expect = 8e-08 Identities = 27/58 (46%), Positives = 38/58 (65%) Frame = +3 Query: 318 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKW 491 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDW 334 Score = 34.7 bits (78), Expect = 0.14 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +3 Query: 99 ILYECYEDVASGSEIRSVVLAG-----RRFYDKEGLPAFPMGKIDQTRMWKVGEKVRSTR 263 +L E Y++V +G+E + + R YDKE + +I +WK GE VRS R Sbjct: 345 VLNELYDNVENGNEAKRSLEYNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLR 398 Query: 264 PD 269 P+ Sbjct: 399 PE 400
>ILV5_POPEU (P84534) Ketol-acid reductoisomerase, chloroplast (EC 1.1.1.86)| (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Fragment) Length = 14 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +3 Query: 171 FYDKEGLPAFPMGK 212 FY+KEGLPAFPMGK Sbjct: 1 FYEKEGLPAFPMGK 14
>FOXJ2_HUMAN (Q9P0K8) Forkhead box protein J2 (Fork head homologous X)| Length = 574 Score = 32.3 bits (72), Expect = 0.71 Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Frame = -1 Query: 279 QGHHLAGSSAPFRRPSTCEFGRFCP*GKQEGL------PCHKTSDQPTQHSGFHFQRQHL 118 QG G + P PST G P GKQ G P P QH G+H + H Sbjct: 325 QGPSAVGGAPPLHTPSTD--GCTPPGGKQAGAEGYGPPPVMAMHPPPLQHGGYHPHQHHP 382 Query: 117 HS 112 HS Sbjct: 383 HS 384
>NFRB_ECOLI (P0AFA5) Bacteriophage N4 adsorption protein B| Length = 745 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -2 Query: 395 LDHAL---VDDLRVGVTLLPQHLDLGHHKCNVNSSREGVEWAKVTIWPGRAHLFADLPHA 225 LD AL V+ LR+G ++L Q L + + GV W + W + L A++P + Sbjct: 505 LDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPAS 564 Query: 224 SLVDFA 207 + +A Sbjct: 565 VALHYA 570
>NFRB_ECO57 (P0AFA6) Bacteriophage N4 adsorption protein B| Length = 745 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -2 Query: 395 LDHAL---VDDLRVGVTLLPQHLDLGHHKCNVNSSREGVEWAKVTIWPGRAHLFADLPHA 225 LD AL V+ LR+G ++L Q L + + GV W + W + L A++P + Sbjct: 505 LDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPAS 564 Query: 224 SLVDFA 207 + +A Sbjct: 565 VALHYA 570
>HOY1_YARLI (Q99160) Homeobox protein HOY1| Length = 509 Score = 30.0 bits (66), Expect = 3.5 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Frame = -2 Query: 395 LDHALVDDLRVGVTLLPQHLDLGHHKCNVNSSRE-----GVEWAKVTIWPGRAHLFADLP 231 +D VDD+ + ++ +D+ HH+ +V+SS + G + I HL A P Sbjct: 94 VDDVSVDDVSMTADVINSPVDVIHHRTDVSSSADMLHHFGADLVTTPIQTHFNHLLATPP 153 Query: 230 HASLVDFAHRESRKAFLVIKPPTSQHNTPDFT 135 +S A + T H TP+ T Sbjct: 154 TSSSSSHVTTVDSPASSITDFSTLGHMTPNLT 185
>CRCB1_BACSK (Q5WJQ2) Protein crcB homolog 1| Length = 127 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 118 KMLPLEVKSGVLCWLVGGFMTRKAF 192 K +PL VK G+ L+GGF T F Sbjct: 59 KSIPLAVKKGITVGLIGGFTTMSTF 83
>FBS1_HUMAN (P62706) Fibrosin-1| Length = 177 Score = 25.0 bits (53), Expect(2) = 8.5 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -3 Query: 277 RSPSGRVERTFSPTFHMRVWSILPIG 200 R P G + TF+P R W+ LP G Sbjct: 45 RGPWGLLRYTFAPVRACRPWACLPKG 70 Score = 22.3 bits (46), Expect(2) = 8.5 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = -1 Query: 99 CPCKGKMMHCMPC*TPFCLPRSRSCIPQA 13 C KG + C P LP SC P+A Sbjct: 66 CLPKGSLSQRPKCPPPVHLPPKSSCPPRA 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,079,089 Number of Sequences: 219361 Number of extensions: 1748033 Number of successful extensions: 5099 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4925 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5098 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
