ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29h23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence Length = 1843 Score = 789 bits (398), Expect = 0.0 Identities = 587/650 (90%) Strand = Plus / Plus Query: 18 gttggcggatttaaatggcgtgtgctaatttttcccaagggaaataatgtggaccatctc 77 ||||| ||||| |||||||||||||| ||||| || ||||| || |||||||||||| || Sbjct: 440 gttggaggattcaaatggcgtgtgctgattttccctaaggggaacaatgtggaccatttc 499 Query: 78 tcgatgtacttggatgttgcagactcggggaacctcccttacggatggagccggtatgct 137 || ||||| |||||||| || ||||||| ||| |||||||| ||||||| |||||||||| Sbjct: 500 tctatgtatttggatgtcgcggactcggtgaatctcccttatggatggaaccggtatgct 559 Query: 138 cagttcagcctagccattgtaaaccagatccatcagaagtatacagcacgcaaagatact 197 ||||||||| | || |||| ||||||||||||| ||||||||| || ||||||||| Sbjct: 560 cagttcagcttggctgttgtgaaccagatccatccgaagtataccattcggaaagatact 619 Query: 198 caacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagt 257 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 620 caacatcaatttaatgcacgtgagagtgactggggtttcacatcttttatgcctttgagt 679 Query: 258 gagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgag 317 || ||||||||||||||||||||||| || || ||||| || |||||||| ||||||||| Sbjct: 680 gatctgtatgacccaagtaggggctaccttgttaatgacaccgttgttgtggaagctgag 739 Query: 318 gttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttat 377 ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 740 gttgctgttcgcagaatggttgattactggacttatgactcgaaaaaggaaacaggatat 799 Query: 378 gttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccctgtat 437 |||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||| Sbjct: 800 gttggtctaaagaatcaaggagctacctgttatatgaactctcttctacaaacactgtac 859 Query: 438 catatgccttactttcggaaggctgtatatcatatgccaactactgagaatgacatgcca 497 ||||| || || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 catataccatatttcaggaaggctgtatatcatatgccaactactgagaatgacatgcca 919 Query: 498 tctgggagtattcctttagccctgcagagccttttctacaagctccagtatagcgacaat 557 ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 920 tctgggagtattcctttagccctgcagagccttttttacaagctccaatacagcgacaat 979 Query: 558 agtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcatg 617 || ||||||||||| |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 980 agcgtagctacaaaggagttgaccaaatcttttggatgggacacttatgattctttcatg 1039 Query: 618 cagcatgatgtgcaagagctcaacagagttctatgcgagaaacttgaaga 667 ||||||||||| |||||||| ||||||||||| || |||||||||||||| Sbjct: 1040 cagcatgatgttcaagagcttaacagagttctttgtgagaaacttgaaga 1089
>gb|AY107638.1| Zea mays PCO130245 mRNA sequence Length = 789 Score = 410 bits (207), Expect = e-111 Identities = 315/351 (89%) Strand = Plus / Plus Query: 317 ggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggtta 376 ||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 31 ggttgctgtccgcataatggttgattattggacttatgactcgaaaaaagaaacaggttt 90 Query: 377 tgttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccctgta 436 ||| ||||| |||||||| |||||||||||||||||||| ||||| || ||||| | || Sbjct: 91 tgtaggtcttaagaatcaaggtgctacctgttatatgaattctctccttcaaacgttata 150 Query: 437 tcatatgccttactttcggaaggctgtatatcatatgccaactactgagaatgacatgcc 496 |||| || || ||| | ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 151 ccatacaccatattttagaaaggctgtatatcatatgccaacaactgagaatgacatgcc 210 Query: 497 atctgggagtattcctttagccctgcagagccttttctacaagctccagtatagcgacaa 556 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 211 atctgggagtattcctttagccctgcagagccttttttacaagctccagtatagcgacaa 270 Query: 557 tagtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcat 616 |||||||| || ||||||||||| ||||| || || ||||| || |||||||||||||| Sbjct: 271 cagtgtagcgacgaaagagttgaccaaatcctttggatgggatacctatgattctttcat 330 Query: 617 gcagcatgatgtgcaagagctcaacagagttctatgcgagaaacttgaaga 667 |||||||||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 331 gcagcatgatgtgcaagaactcaacagagttctttgtgagaaactggaaga 381
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 349 bits (176), Expect = 7e-93 Identities = 233/252 (92%) Strand = Plus / Plus Query: 191 agatactcaacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcc 250 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18378678 agatactcaacatcaatttaatgcacgtgagagtgactggggtttcacatcttttatgcc 18378737 Query: 251 tctgagtgagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttga 310 | ||||||| ||||||||||||||||||||||| || || ||||| || |||||||| || Sbjct: 18378738 tttgagtgatctgtatgacccaagtaggggctaccttgttaatgacaccgttgttgtgga 18378797 Query: 311 agctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaac 370 |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| Sbjct: 18378798 agctgaggttgctgttcgcagaatggttgattactggacttatgactcgaaaaaggaaac 18378857 Query: 371 aggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaac 430 ||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| Sbjct: 18378858 aggatatgttggtctaaagaatcaaggagctacctgttatatgaactctcttctacaaac 18378917 Query: 431 cctgtatcatat 442 ||||| ||||| Sbjct: 18378918 actgtaccatat 18378929 Score = 323 bits (163), Expect = 4e-85 Identities = 199/211 (94%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18379023 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 18379082 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 18379083 ccctgcagagccttttttacaagctccaatacagcgacaatagcgtagctacaaaggagt 18379142 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 18379143 tgaccaaatcttttggatgggacacttatgattctttcatgcagcatgatgttcaagagc 18379202 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 | ||||||||||| || |||||||||||||| Sbjct: 18379203 ttaacagagttctttgtgagaaacttgaaga 18379233 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 34 ggcgtgtgctaatttttcccaagggaaataatgtggaccatctctcgatgtacttggatg 93 |||||||||| ||||| || ||||| || |||||||||||| |||| ||||| ||||||| Sbjct: 18376523 ggcgtgtgctgattttccctaaggggaacaatgtggaccatttctctatgtatttggatg 18376582 Query: 94 ttgcagactcggggaacctcccttacggatggagccggtatgctcagttcagcctagcca 153 | || ||||||| ||| |||||||| ||||||| ||||||||||||||||||| | || Sbjct: 18376583 tcgcggactcggtgaatctcccttatggatggaaccggtatgctcagttcagcttggctg 18376642 Query: 154 ttgtaaaccagatccatcagaagtatac 181 |||| ||||||||||||| ||||||||| Sbjct: 18376643 ttgtgaaccagatccatccgaagtatac 18376670
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 349 bits (176), Expect = 7e-93 Identities = 233/252 (92%) Strand = Plus / Plus Query: 191 agatactcaacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcc 250 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18304904 agatactcaacatcaatttaatgcacgtgagagtgactggggtttcacatcttttatgcc 18304963 Query: 251 tctgagtgagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttga 310 | ||||||| ||||||||||||||||||||||| || || ||||| || |||||||| || Sbjct: 18304964 tttgagtgatctgtatgacccaagtaggggctaccttgttaatgacaccgttgttgtgga 18305023 Query: 311 agctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaac 370 |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| Sbjct: 18305024 agctgaggttgctgttcgcagaatggttgattactggacttatgactcgaaaaaggaaac 18305083 Query: 371 aggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaac 430 ||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| Sbjct: 18305084 aggatatgttggtctaaagaatcaaggagctacctgttatatgaactctcttctacaaac 18305143 Query: 431 cctgtatcatat 442 ||||| ||||| Sbjct: 18305144 actgtaccatat 18305155 Score = 323 bits (163), Expect = 4e-85 Identities = 199/211 (94%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18305249 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 18305308 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 18305309 ccctgcagagccttttttacaagctccaatacagcgacaatagcgtagctacaaaggagt 18305368 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 18305369 tgaccaaatcttttggatgggacacttatgattctttcatgcagcatgatgttcaagagc 18305428 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 | ||||||||||| || |||||||||||||| Sbjct: 18305429 ttaacagagttctttgtgagaaacttgaaga 18305459 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 34 ggcgtgtgctaatttttcccaagggaaataatgtggaccatctctcgatgtacttggatg 93 |||||||||| ||||| || ||||| || |||||||||||| |||| ||||| ||||||| Sbjct: 18302749 ggcgtgtgctgattttccctaaggggaacaatgtggaccatttctctatgtatttggatg 18302808 Query: 94 ttgcagactcggggaacctcccttacggatggagccggtatgctcagttcagcctagcca 153 | || ||||||| ||| |||||||| ||||||| ||||||||||||||||||| | || Sbjct: 18302809 tcgcggactcggtgaatctcccttatggatggaaccggtatgctcagttcagcttggctg 18302868 Query: 154 ttgtaaaccagatccatcagaagtatac 181 |||| ||||||||||||| ||||||||| Sbjct: 18302869 ttgtgaaccagatccatccgaagtatac 18302896
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 349 bits (176), Expect = 7e-93 Identities = 233/252 (92%) Strand = Plus / Plus Query: 191 agatactcaacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcc 250 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30577 agatactcaacatcaatttaatgcacgtgagagtgactggggtttcacatcttttatgcc 30636 Query: 251 tctgagtgagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttga 310 | ||||||| ||||||||||||||||||||||| || || ||||| || |||||||| || Sbjct: 30637 tttgagtgatctgtatgacccaagtaggggctaccttgttaatgacaccgttgttgtgga 30696 Query: 311 agctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaac 370 |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| Sbjct: 30697 agctgaggttgctgttcgcagaatggttgattactggacttatgactcgaaaaaggaaac 30756 Query: 371 aggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaac 430 ||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| Sbjct: 30757 aggatatgttggtctaaagaatcaaggagctacctgttatatgaactctcttctacaaac 30816 Query: 431 cctgtatcatat 442 ||||| ||||| Sbjct: 30817 actgtaccatat 30828 Score = 323 bits (163), Expect = 4e-85 Identities = 199/211 (94%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30922 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 30981 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 30982 ccctgcagagccttttttacaagctccaatacagcgacaatagcgtagctacaaaggagt 31041 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 31042 tgaccaaatcttttggatgggacacttatgattctttcatgcagcatgatgttcaagagc 31101 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 | ||||||||||| || |||||||||||||| Sbjct: 31102 ttaacagagttctttgtgagaaacttgaaga 31132 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 34 ggcgtgtgctaatttttcccaagggaaataatgtggaccatctctcgatgtacttggatg 93 |||||||||| ||||| || ||||| || |||||||||||| |||| ||||| ||||||| Sbjct: 28422 ggcgtgtgctgattttccctaaggggaacaatgtggaccatttctctatgtatttggatg 28481 Query: 94 ttgcagactcggggaacctcccttacggatggagccggtatgctcagttcagcctagcca 153 | || ||||||| ||| |||||||| ||||||| ||||||||||||||||||| | || Sbjct: 28482 tcgcggactcggtgaatctcccttatggatggaaccggtatgctcagttcagcttggctg 28541 Query: 154 ttgtaaaccagatccatcagaagtatac 181 |||| ||||||||||||| ||||||||| Sbjct: 28542 ttgtgaaccagatccatccgaagtatac 28569
>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full insert sequence Length = 3975 Score = 345 bits (174), Expect = 1e-91 Identities = 309/354 (87%) Strand = Plus / Plus Query: 314 tgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacagg 373 |||||||||||| |||||||||||||| |||||||| ||||| || ||||| |||||||| Sbjct: 2 tgaggttgctgtccgcaaaatggttgattattggacatatgattcaaaaaaagaaacagg 61 Query: 374 ttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccct 433 ||| ||||| || ||||| || || ||||||||||| ||||||||||| || || || || Sbjct: 62 ttacgttggcctgaagaaccaaggagctacctgttacatgaactctctactacagacact 121 Query: 434 gtatcatatgccttactttcggaaggctgtatatcatatgccaactactgagaatgacat 493 || ||||| || ||||| |||||||||| |||||||||||||| || || ||||| || Sbjct: 122 ataccatataccatacttcaggaaggctgtgtatcatatgccaaccaccgaaaatgatat 181 Query: 494 gccatctgggagtattcctttagccctgcagagccttttctacaagctccagtatagcga 553 |||||||||||||||||| || || ||||||||||||||||||||||||||||||| || Sbjct: 182 gccatctgggagtattccgttggcattgcagagccttttctacaagctccagtatagtga 241 Query: 554 caatagtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattcttt 613 |||||||||||| || |||||| |||| |||||||| || |||||||| |||||||| || Sbjct: 242 caatagtgtagccaccaaagagctgaccaaatcttttggatgggacacatatgattcctt 301 Query: 614 catgcagcatgatgtgcaagagctcaacagagttctatgcgagaaacttgaaga 667 |||||| |||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 302 catgcaacatgatgtacaagagctcaacagagttctctgtgagaaacttgaaga 355
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 244 bits (123), Expect = 3e-61 Identities = 204/231 (88%) Strand = Plus / Minus Query: 191 agatactcaacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcc 250 ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 95427 agatactcagcatcaatttaatgcacgtgagagtgattggggtttcacatcttttatgcc 95368 Query: 251 tctgagtgagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttga 310 | |||||||||| ||||| |||||||| || || || || |||||||||||||||| || Sbjct: 95367 tttgagtgagctctatgatccaagtagaggataccttgtcgatgatactgttgttgtgga 95308 Query: 311 agctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaac 370 |||||||||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| Sbjct: 95307 ggctgaggttgctgtccgcaaaatggttgattattggacatatgattcaaaaaaagaaac 95248 Query: 371 aggttatgttggtctcaagaatcagggtgctacctgttatatgaactctct 421 |||||| ||||| || ||||| || || ||||||||||| ||||||||||| Sbjct: 95247 aggttacgttggcctgaagaaccaaggagctacctgttacatgaactctct 95197 Score = 244 bits (123), Expect = 3e-61 Identities = 189/211 (89%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 ||||||| |||||||||||||| || || ||||| |||||||||||||||||||| || | Sbjct: 95079 aggctgtgtatcatatgccaaccaccgaaaatgatatgccatctgggagtattccgttgg 95020 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 95019 cattgcagagccttttctacaagctccagtatagtgacaatagtgtagccaccaaagagc 94960 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || |||||||| |||||||| |||||||| |||||||| ||||||| Sbjct: 94959 tgaccaaatcttttggatgggacacatatgattccttcatgcaacatgatgtacaagagc 94900 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 ||||||||||||| || |||||||||||||| Sbjct: 94899 tcaacagagttctctgtgagaaacttgaaga 94869 Score = 119 bits (60), Expect = 1e-23 Identities = 126/148 (85%) Strand = Plus / Minus Query: 34 ggcgtgtgctaatttttcccaagggaaataatgtggaccatctctcgatgtacttggatg 93 |||||||||| ||||| || ||||| || || ||||||||| |||| ||||||||||||| Sbjct: 96515 ggcgtgtgctcattttccctaaggggaacaacgtggaccatttctccatgtacttggatg 96456 Query: 94 ttgcagactcggggaacctcccttacggatggagccggtatgctcagttcagcctagcca 153 |||| ||||| | |||||||| || || |||||||| ||||||||||| ||| | ||| Sbjct: 96455 ttgccgactctgctaacctcccatatggttggagccgatatgctcagtttagcttggccg 96396 Query: 154 ttgtaaaccagatccatcagaagtatac 181 |||| ||||||||||| ||||||||||| Sbjct: 96395 ttgtcaaccagatccaacagaagtatac 96368
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 244 bits (123), Expect = 3e-61 Identities = 204/231 (88%) Strand = Plus / Minus Query: 191 agatactcaacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcc 250 ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 20660419 agatactcagcatcaatttaatgcacgtgagagtgattggggtttcacatcttttatgcc 20660360 Query: 251 tctgagtgagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttga 310 | |||||||||| ||||| |||||||| || || || || |||||||||||||||| || Sbjct: 20660359 tttgagtgagctctatgatccaagtagaggataccttgtcgatgatactgttgttgtgga 20660300 Query: 311 agctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaac 370 |||||||||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| Sbjct: 20660299 ggctgaggttgctgtccgcaaaatggttgattattggacatatgattcaaaaaaagaaac 20660240 Query: 371 aggttatgttggtctcaagaatcagggtgctacctgttatatgaactctct 421 |||||| ||||| || ||||| || || ||||||||||| ||||||||||| Sbjct: 20660239 aggttacgttggcctgaagaaccaaggagctacctgttacatgaactctct 20660189 Score = 244 bits (123), Expect = 3e-61 Identities = 189/211 (89%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 ||||||| |||||||||||||| || || ||||| |||||||||||||||||||| || | Sbjct: 20660071 aggctgtgtatcatatgccaaccaccgaaaatgatatgccatctgggagtattccgttgg 20660012 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 20660011 cattgcagagccttttctacaagctccagtatagtgacaatagtgtagccaccaaagagc 20659952 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || |||||||| |||||||| |||||||| |||||||| ||||||| Sbjct: 20659951 tgaccaaatcttttggatgggacacatatgattccttcatgcaacatgatgtacaagagc 20659892 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 ||||||||||||| || |||||||||||||| Sbjct: 20659891 tcaacagagttctctgtgagaaacttgaaga 20659861 Score = 119 bits (60), Expect = 1e-23 Identities = 126/148 (85%) Strand = Plus / Minus Query: 34 ggcgtgtgctaatttttcccaagggaaataatgtggaccatctctcgatgtacttggatg 93 |||||||||| ||||| || ||||| || || ||||||||| |||| ||||||||||||| Sbjct: 20661507 ggcgtgtgctcattttccctaaggggaacaacgtggaccatttctccatgtacttggatg 20661448 Query: 94 ttgcagactcggggaacctcccttacggatggagccggtatgctcagttcagcctagcca 153 |||| ||||| | |||||||| || || |||||||| ||||||||||| ||| | ||| Sbjct: 20661447 ttgccgactctgctaacctcccatatggttggagccgatatgctcagtttagcttggccg 20661388 Query: 154 ttgtaaaccagatccatcagaagtatac 181 |||| ||||||||||| ||||||||||| Sbjct: 20661387 ttgtcaaccagatccaacagaagtatac 20661360
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 244 bits (123), Expect = 3e-61 Identities = 204/231 (88%) Strand = Plus / Minus Query: 191 agatactcaacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcc 250 ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 20970654 agatactcagcatcaatttaatgcacgtgagagtgattggggtttcacatcttttatgcc 20970595 Query: 251 tctgagtgagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttga 310 | |||||||||| ||||| |||||||| || || || || |||||||||||||||| || Sbjct: 20970594 tttgagtgagctctatgatccaagtagaggataccttgtcgatgatactgttgttgtgga 20970535 Query: 311 agctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaac 370 |||||||||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| Sbjct: 20970534 ggctgaggttgctgtccgcaaaatggttgattattggacatatgattcaaaaaaagaaac 20970475 Query: 371 aggttatgttggtctcaagaatcagggtgctacctgttatatgaactctct 421 |||||| ||||| || ||||| || || ||||||||||| ||||||||||| Sbjct: 20970474 aggttacgttggcctgaagaaccaaggagctacctgttacatgaactctct 20970424 Score = 244 bits (123), Expect = 3e-61 Identities = 189/211 (89%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 ||||||| |||||||||||||| || || ||||| |||||||||||||||||||| || | Sbjct: 20970306 aggctgtgtatcatatgccaaccaccgaaaatgatatgccatctgggagtattccgttgg 20970247 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 20970246 cattgcagagccttttctacaagctccagtatagtgacaatagtgtagccaccaaagagc 20970187 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || |||||||| |||||||| |||||||| |||||||| ||||||| Sbjct: 20970186 tgaccaaatcttttggatgggacacatatgattccttcatgcaacatgatgtacaagagc 20970127 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 ||||||||||||| || |||||||||||||| Sbjct: 20970126 tcaacagagttctctgtgagaaacttgaaga 20970096 Score = 119 bits (60), Expect = 1e-23 Identities = 126/148 (85%) Strand = Plus / Minus Query: 34 ggcgtgtgctaatttttcccaagggaaataatgtggaccatctctcgatgtacttggatg 93 |||||||||| ||||| || ||||| || || ||||||||| |||| ||||||||||||| Sbjct: 20971742 ggcgtgtgctcattttccctaaggggaacaacgtggaccatttctccatgtacttggatg 20971683 Query: 94 ttgcagactcggggaacctcccttacggatggagccggtatgctcagttcagcctagcca 153 |||| ||||| | |||||||| || || |||||||| ||||||||||| ||| | ||| Sbjct: 20971682 ttgccgactctgctaacctcccatatggttggagccgatatgctcagtttagcttggccg 20971623 Query: 154 ttgtaaaccagatccatcagaagtatac 181 |||| ||||||||||| ||||||||||| Sbjct: 20971622 ttgtcaaccagatccaacagaagtatac 20971595
>ref|NM_191424.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3327 Score = 151 bits (76), Expect = 3e-33 Identities = 265/328 (80%) Strand = Plus / Plus Query: 307 ttgaagctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaagg 366 |||| |||||||||||||| || ||||| ||||| | |||| |||||| || ||||||| Sbjct: 506 ttgaggctgaggttgctgtgcgtaaaatagttgatttctggaattatgattccaaaaagg 565 Query: 367 aaacaggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttctgc 426 | || || |||||||| || |||||||| || ||||| || || ||||| |||||||| | Sbjct: 566 agactggctatgttggccttaagaatcaaggggctacatgctacatgaattctcttcttc 625 Query: 427 aaaccctgtatcatatgccttactttcggaaggctgtatatcatatgccaactactgaga 486 | || || || ||||| || ||||| || ||||||||||| |||||||||||||| |||| Sbjct: 626 agacgctttaccatattccgtacttccgaaaggctgtataccatatgccaactacagaga 685 Query: 487 atgacatgccatctgggagtattcctttagccctgcagagccttttctacaagctccagt 546 |||| | || | ||||| || ||||| || |||| || ||||||| ||| || ||| Sbjct: 686 atgatacaccttgcgggagcatccctttggctttgcaaagtcttttctgcaaacttcagc 745 Query: 547 atagcgacaatagtgtagctacaaaagagttgactaaatctttcgggtgggacacttatg 606 |||| ||||||||||| ||||||||||| | || |||||||| || ||||| || || Sbjct: 746 atagtgacaatagtgtttctacaaaagagcttaccaaatcttttggatgggataccgttg 805 Query: 607 attctttcatgcagcatgatgtgcaaga 634 |||||||| ||||||||||||| ||||| Sbjct: 806 attctttcctgcagcatgatgttcaaga 833
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete sequence Length = 141216 Score = 143 bits (72), Expect = 8e-31 Identities = 156/184 (84%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||| || ||||| || ||||| ||||| ||||| |||| ||||| ||| ||| Sbjct: 29511 aggctgtataccacatgcctacaactgaaaatgatatgccctctgctagtatccctctag 29570 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | |||| ||| | ||||| ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 29571 cgttgcaaagcttattctataagctccagtacagtgacaacagtgtagcaacaaaggagt 29630 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| ||||| ||||| |||||||| |||||||||||| ||||||||||||||||||| | Sbjct: 29631 tgacaaaatcattcggatgggacacatatgattctttcttgcagcatgatgtgcaagaac 29690 Query: 637 tcaa 640 |||| Sbjct: 29691 tcaa 29694 Score = 123 bits (62), Expect = 8e-25 Identities = 188/230 (81%) Strand = Plus / Plus Query: 222 agtgactggggtttcacatcttttatgcctctgagtgagctgtatgacccaagtaggggc 281 ||||| |||||||||||||| |||||||| || |||| || ||||| |||| | || Sbjct: 29193 agtgattggggtttcacatcctttatgccacttggtgaactatatgatccaaacaaaggt 29252 Query: 282 tatctcgtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgac 341 ||||| || ||||||| ||||||||| |||||||| ||||| || ||||| |||||| Sbjct: 29253 tatcttgttgatgatacatgtgttgttgatgctgaggtagctgtgcgaaaaattgttgac 29312 Query: 342 tattggacttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgct 401 |||||| | |||||||| |||| |||||| || | |||||| || ||||| || || ||| Sbjct: 29313 tattggtcgtatgactcaaaaatggaaactggctttgttggactgaagaaccaaggagct 29372 Query: 402 acctgttatatgaactctcttctgcaaaccctgtatcatatgccttactt 451 ||||||||||||||||| ||||| ||||| || || ||||| |||||||| Sbjct: 29373 acctgttatatgaactcacttcttcaaactctctaccatattccttactt 29422
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 141 bits (71), Expect = 3e-30 Identities = 176/211 (83%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||| ||||||||||| || |||||||| ||||| |||| || |||||| | | Sbjct: 88511 aggctgtataccatatgccaacaacggagaatgatatgcccgctggaagcattcctctgg 88452 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||| || | |||||||||||||| ||||| |||| ||||| || ||||| ||| Sbjct: 88451 ctctgcaaagtttattctacaagctccaatatagtgacaccagtgttgcaacaaaggagc 88392 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 |||| |||||||| || ||||| || ||||||||||||||||| |||||||| ||||| | Sbjct: 88391 tgacaaaatcttttggatgggatacatatgattctttcatgcaacatgatgttcaagaac 88332 Query: 637 tcaacagagttctatgcgagaaacttgaaga 667 | || ||||||||||| || ||||||||||| Sbjct: 88331 tgaatagagttctatgtgaaaaacttgaaga 88301 Score = 133 bits (67), Expect = 8e-28 Identities = 211/259 (81%) Strand = Plus / Minus Query: 201 catcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagtgag 260 ||||| || |||||||| || ||||| ||||||||||| || || ||||| || |||| Sbjct: 88867 catcaattcaatgcacgagaaagtgattggggtttcacgtccttcatgccgcttggtgaa 88808 Query: 261 ctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgaggtt 320 ||||||| || ||||| || ||||| ||||||||||| |||| |||||||| |||||| Sbjct: 88807 ttgtatgatcccagtagagggtatcttctgaatgatactcttgtagttgaagccgaggtt 88748 Query: 321 gctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttatgtt 380 |||||| | || ||||| || ||||||||||| || |||||||| || || |||||| Sbjct: 88747 cttgttcgtaggattgttgattactggacttatgattcaaaaaaggagactggctatgtt 88688 Query: 381 ggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccctgtatcat 440 || || ||||| ||||| ||||| ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 88687 gggctgaagaaccagggagctacatgttatatgaattctctactccaaactctgtaccat 88628 Query: 441 atgccttactttcggaagg 459 || ||||| ||||| |||| Sbjct: 88627 ataccttattttcgaaagg 88609
>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease AT3G11910 mRNA, complete cds Length = 3813 Score = 105 bits (53), Expect = 2e-19 Identities = 233/293 (79%) Strand = Plus / Plus Query: 198 caacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagt 257 |||||||| || |||||| | || || |||||||| || ||||| || |||||||| || Sbjct: 507 caacatcaattcaatgcaagagaaagcgactgggggtttacatcattcatgcctctcagc 566 Query: 258 gagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgag 317 ||||| ||||| || | | | || ||| | |||||||| |||||| | |||||||||| Sbjct: 567 gagctctatgaacccactcgaggatatttagtgaatgacactgttctgattgaagctgaa 626 Query: 318 gttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttat 377 |||||||| || ||| | |||| |||||| | |||||||| ||||| || ||||||| | Sbjct: 627 gttgctgtgcgtaaagttcttgattattggtcatatgactcaaaaaaagagacaggtttt 686 Query: 378 gttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccctgtat 437 ||||| || || || || |||||||||||||| ||||| ||||| ||||| || | || Sbjct: 687 gttggactaaaaaaccaaggtgctacctgttacatgaattctctcctgcagactttatac 746 Query: 438 catatgccttactttcggaaggctgtatatcatatgccaactactgagaatga 490 || || ||||||||| | |||||||| || || |||||||| ||||| ||||| Sbjct: 747 cacataccttactttagaaaggctgtttaccacatgccaacgactgaaaatga 799 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 558 agtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcatg 617 |||||||| ||||| ||| |||| || || || || ||||| || ||||||||||| ||| Sbjct: 867 agtgtagcgacaaaggagctgacaaagtcgtttggttgggatacatatgattcttttatg 926 Query: 618 cagcatgatgtgcaagagctcaacagagttct 649 || |||||||| ||||| |||||||||||||| Sbjct: 927 caacatgatgtacaagaactcaacagagttct 958 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 45 atttttcccaagggaaataatgtggaccatctctcgatgtacttggatgttgc 97 ||||||||||| ||||| ||||| |||||| | || ||||||||||||||||| Sbjct: 354 atttttcccaaaggaaacaatgtcgaccatttgtcaatgtacttggatgttgc 406
>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence Length = 4231 Score = 105 bits (53), Expect = 2e-19 Identities = 233/293 (79%) Strand = Plus / Plus Query: 198 caacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagt 257 |||||||| || |||||| | || || |||||||| || ||||| || |||||||| || Sbjct: 509 caacatcaattcaatgcaagagaaagcgactgggggtttacatcattcatgcctctcagc 568 Query: 258 gagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgag 317 ||||| ||||| || | | | || ||| | |||||||| |||||| | |||||||||| Sbjct: 569 gagctctatgaacccactcgaggatatttagtgaatgacactgttctgattgaagctgaa 628 Query: 318 gttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttat 377 |||||||| || ||| | |||| |||||| | |||||||| ||||| || ||||||| | Sbjct: 629 gttgctgtgcgtaaagttcttgattattggtcatatgactcaaaaaaagagacaggtttt 688 Query: 378 gttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccctgtat 437 ||||| || || || || |||||||||||||| ||||| ||||| ||||| || | || Sbjct: 689 gttggactaaaaaaccaaggtgctacctgttacatgaattctctcctgcagactttatac 748 Query: 438 catatgccttactttcggaaggctgtatatcatatgccaactactgagaatga 490 || || ||||||||| | |||||||| || || |||||||| ||||| ||||| Sbjct: 749 cacataccttactttagaaaggctgtttaccacatgccaacgactgaaaatga 801 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 558 agtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcatg 617 |||||||| ||||| ||| |||| || || || || ||||| || ||||||||||| ||| Sbjct: 869 agtgtagcgacaaaggagctgacaaagtcgtttggttgggatacatatgattcttttatg 928 Query: 618 cagcatgatgtgcaagagctcaacagagttct 649 || |||||||| ||||| |||||||||||||| Sbjct: 929 caacatgatgtacaagaactcaacagagttct 960 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 45 atttttcccaagggaaataatgtggaccatctctcgatgtacttggatgttgc 97 ||||||||||| ||||| ||||| |||||| | || ||||||||||||||||| Sbjct: 356 atttttcccaaaggaaacaatgtcgaccatttgtcaatgtacttggatgttgc 408
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 105 bits (53), Expect = 2e-19 Identities = 179/221 (80%) Strand = Plus / Plus Query: 222 agtgactggggtttcacatcttttatgcctctgagtgagctgtatgacccaagtaggggc 281 ||||| |||||||| || || ||||||||| || |||| || || |||| ||||| ||| Sbjct: 3446502 agtgattggggttttacttcctttatgcctttgggtgatctctacaaccccagtagaggc 3446561 Query: 282 tatctcgtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgac 341 ||||| || ||||||||| | | || || || || |||||||| | || ||||||| Sbjct: 3446562 tatcttgtaaatgatacttgtatagtggaggccgaagttgctgtatgtaaggtggttgat 3446621 Query: 342 tattggacttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgct 401 ||||||| |||||||| ||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 3446622 tattggagctatgactctaaaaaggaaactggttatgttggtctgaaaaatcaaggtgct 3446681 Query: 402 acctgttatatgaactctcttctgcaaaccctgtatcatat 442 || || |||||||| |||||||| || || ||||| ||||| Sbjct: 3446682 acttgctatatgaattctcttcttcagactctgtaccatat 3446722 Score = 97.6 bits (49), Expect = 5e-17 Identities = 157/193 (81%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 ||||||| ||||||||||| || ||||||||||||||||| || || || ||||| |||| Sbjct: 3446818 aggctgtttatcatatgcccacaactgagaatgacatgccttcgggaagcattccattag 3446877 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||| || || || || ||||| ||||||| |||| ||||| ||||||| || Sbjct: 3446878 ctctgcaaagtctcttttataagctgcagtataatgacagcagtgtctctacaaaggaac 3446937 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 | || |||||||| |||||||||| | ||||| |||||||| |||||||||||||| | Sbjct: 3446938 tcacaaaatcttttgggtgggacatgcacgattcattcatgcaacatgatgtgcaagaac 3446997 Query: 637 tcaacagagttct 649 | || |||||||| Sbjct: 3446998 taaatagagttct 3447010
>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin carboxyl-terminal hydrolase (At3g11910) mRNA, complete cds Length = 3379 Score = 105 bits (53), Expect = 2e-19 Identities = 233/293 (79%) Strand = Plus / Plus Query: 198 caacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagt 257 |||||||| || |||||| | || || |||||||| || ||||| || |||||||| || Sbjct: 412 caacatcaattcaatgcaagagaaagcgactgggggtttacatcattcatgcctctcagc 471 Query: 258 gagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgag 317 ||||| ||||| || | | | || ||| | |||||||| |||||| | |||||||||| Sbjct: 472 gagctctatgaacccactcgaggatatttagtgaatgacactgttctgattgaagctgaa 531 Query: 318 gttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttat 377 |||||||| || ||| | |||| |||||| | |||||||| ||||| || ||||||| | Sbjct: 532 gttgctgtgcgtaaagttcttgattattggtcatatgactcaaaaaaagagacaggtttt 591 Query: 378 gttggtctcaagaatcagggtgctacctgttatatgaactctcttctgcaaaccctgtat 437 ||||| || || || || |||||||||||||| ||||| ||||| ||||| || | || Sbjct: 592 gttggactaaaaaaccaaggtgctacctgttacatgaattctctcctgcagactttatac 651 Query: 438 catatgccttactttcggaaggctgtatatcatatgccaactactgagaatga 490 || || ||||||||| | |||||||| || || |||||||| ||||| ||||| Sbjct: 652 cacataccttactttagaaaggctgtttaccacatgccaacgactgaaaatga 704 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 558 agtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcatg 617 |||||||| ||||| ||| |||| || || || || ||||| || ||||||||||| ||| Sbjct: 772 agtgtagcgacaaaggagctgacaaagtcgtttggttgggatacatatgattcttttatg 831 Query: 618 cagcatgatgtgcaagagctcaacagagttct 649 || |||||||| ||||| |||||||||||||| Sbjct: 832 caacatgatgtacaagaactcaacagagttct 863 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 45 atttttcccaagggaaataatgtggaccatctctcgatgtacttggatgttgc 97 ||||||||||| ||||| ||||| |||||| | || ||||||||||||||||| Sbjct: 259 atttttcccaaaggaaacaatgtcgaccatttgtcaatgtacttggatgttgc 311
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 105 bits (53), Expect = 2e-19 Identities = 179/221 (80%) Strand = Plus / Plus Query: 222 agtgactggggtttcacatcttttatgcctctgagtgagctgtatgacccaagtaggggc 281 ||||| |||||||| || || ||||||||| || |||| || || |||| ||||| ||| Sbjct: 86322 agtgattggggttttacttcctttatgcctttgggtgatctctacaaccccagtagaggc 86381 Query: 282 tatctcgtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgac 341 ||||| || ||||||||| | | || || || || |||||||| | || ||||||| Sbjct: 86382 tatcttgtaaatgatacttgtatagtggaggccgaagttgctgtatgtaaggtggttgat 86441 Query: 342 tattggacttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgct 401 ||||||| |||||||| ||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 86442 tattggagctatgactctaaaaaggaaactggttatgttggtctgaaaaatcaaggtgct 86501 Query: 402 acctgttatatgaactctcttctgcaaaccctgtatcatat 442 || || |||||||| |||||||| || || ||||| ||||| Sbjct: 86502 acttgctatatgaattctcttcttcagactctgtaccatat 86542 Score = 97.6 bits (49), Expect = 5e-17 Identities = 157/193 (81%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 ||||||| ||||||||||| || ||||||||||||||||| || || || ||||| |||| Sbjct: 86638 aggctgtttatcatatgcccacaactgagaatgacatgccttcgggaagcattccattag 86697 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||| || || || || ||||| ||||||| |||| ||||| ||||||| || Sbjct: 86698 ctctgcaaagtctcttttataagctgcagtataatgacagcagtgtctctacaaaggaac 86757 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 | || |||||||| |||||||||| | ||||| |||||||| |||||||||||||| | Sbjct: 86758 tcacaaaatcttttgggtgggacatgcacgattcattcatgcaacatgatgtgcaagaac 86817 Query: 637 tcaacagagttct 649 | || |||||||| Sbjct: 86818 taaatagagttct 86830
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3351 Score = 97.6 bits (49), Expect = 5e-17 Identities = 157/193 (81%) Strand = Plus / Plus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 ||||||| ||||||||||| || ||||||||||||||||| || || || ||||| |||| Sbjct: 698 aggctgtttatcatatgcccacaactgagaatgacatgccttcgggaagcattccattag 757 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | ||||| || || || || ||||| ||||||| |||| ||||| ||||||| || Sbjct: 758 ctctgcaaagtctcttttataagctgcagtataatgacagcagtgtctctacaaaggaac 817 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaagagc 636 | || |||||||| |||||||||| | ||||| |||||||| |||||||||||||| | Sbjct: 818 tcacaaaatcttttgggtgggacatgcacgattcattcatgcaacatgatgtgcaagaac 877 Query: 637 tcaacagagttct 649 | || |||||||| Sbjct: 878 taaatagagttct 890 Score = 73.8 bits (37), Expect = 7e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 222 agtgactggggtttcacatcttttatgcctctgagtgagctgtatgacccaagtaggggc 281 ||||| |||||||| || || ||||||||| || |||| || || |||| ||||| ||| Sbjct: 508 agtgattggggttttacttcctttatgcctttgggtgatctctacaaccccagtagaggc 567 Query: 282 tatctcgtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgac 341 ||||| || ||||||||| | | || || || || |||||||| | || ||||||| Sbjct: 568 tatcttgtaaatgatacttgtatagtggaggccgaagttgctgtatgtaaggtggttgat 627 Query: 342 tattggacttatgactcgaaaaaggaaacaggttatgttggtctcaagaatca 394 ||||||| |||||||| ||||||||||| |||||||||||||| || ||||| Sbjct: 628 tattggagctatgactctaaaaaggaaactggttatgttggtctgaaaaatca 680
>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence, complete sequence Length = 100835 Score = 91.7 bits (46), Expect = 3e-15 Identities = 184/230 (80%) Strand = Plus / Minus Query: 198 caacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagt 257 |||||||| || |||||| | || || |||||||| || ||||| || |||||||| || Sbjct: 69521 caacatcaattcaatgcaagagaaagcgactgggggtttacatcattcatgcctctcagc 69462 Query: 258 gagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgag 317 ||||| ||||| || | | | || ||| | |||||||| |||||| | |||||||||| Sbjct: 69461 gagctctatgaacccactcgaggatatttagtgaatgacactgttctgattgaagctgaa 69402 Query: 318 gttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttat 377 |||||||| || ||| | |||| |||||| | |||||||| ||||| || ||||||| | Sbjct: 69401 gttgctgtgcgtaaagttcttgattattggtcatatgactcaaaaaaagagacaggtttt 69342 Query: 378 gttggtctcaagaatcagggtgctacctgttatatgaactctcttctgca 427 ||||| || || || || |||||||||||||| ||||| ||||| ||||| Sbjct: 69341 gttggactaaaaaaccaaggtgctacctgttacatgaattctctcctgca 69292 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 558 agtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcatg 617 |||||||| ||||| ||| |||| || || || || ||||| || ||||||||||| ||| Sbjct: 69060 agtgtagcgacaaaggagctgacaaagtcgtttggttgggatacatatgattcttttatg 69001 Query: 618 cagcatgatgtgcaagagctcaacagagttct 649 || |||||||| ||||| |||||||||||||| Sbjct: 69000 caacatgatgtacaagaactcaacagagttct 68969 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 45 atttttcccaagggaaataatgtggaccatctctcgatgtacttggatgttgc 97 ||||||||||| ||||| ||||| |||||| | || ||||||||||||||||| Sbjct: 69992 atttttcccaaaggaaacaatgtcgaccatttgtcaatgtacttggatgttgc 69940
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||| |||||||||||||| |||||||| | || | ||||| || ||||| | Sbjct: 32560318 aggctgtataccatatgccaactacagagaatgatacaccttgcgggagcatccctttgg 32560259 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | |||| || ||||||| ||| || ||| |||| ||||||||||| ||||||||||| Sbjct: 32560258 ctttgcaaagtcttttctgcaaacttcagcatagtgacaatagtgtttctacaaaagagc 32560199 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaaga 634 | || |||||||| || ||||| || |||||||||| ||||||||||||| ||||| Sbjct: 32560198 ttaccaaatcttttggatgggataccgttgattctttcctgcagcatgatgttcaaga 32560141 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 307 ttgaagctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaagg 366 |||| |||||||||||||| || ||||| ||||| | |||| |||||| || ||||||| Sbjct: 32560540 ttgaggctgaggttgctgtgcgtaaaatagttgatttctggaattatgattccaaaaagg 32560481 Query: 367 aaacaggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttct 424 | || || |||||||| || |||||||| || ||||| || || ||||| |||||||| Sbjct: 32560480 agactggctatgttggccttaagaatcaaggggctacatgctacatgaattctcttct 32560423
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||| |||||||||||||| |||||||| | || | ||||| || ||||| | Sbjct: 23113 aggctgtataccatatgccaactacagagaatgatacaccttgcgggagcatccctttgg 23054 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | |||| || ||||||| ||| || ||| |||| ||||||||||| ||||||||||| Sbjct: 23053 ctttgcaaagtcttttctgcaaacttcagcatagtgacaatagtgtttctacaaaagagc 22994 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaaga 634 | || |||||||| || ||||| || |||||||||| ||||||||||||| ||||| Sbjct: 22993 ttaccaaatcttttggatgggataccgttgattctttcctgcagcatgatgttcaaga 22936 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 307 ttgaagctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaagg 366 |||| |||||||||||||| || ||||| ||||| | |||| |||||| || ||||||| Sbjct: 23335 ttgaggctgaggttgctgtgcgtaaaatagttgatttctggaattatgattccaaaaagg 23276 Query: 367 aaacaggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttct 424 | || || |||||||| || |||||||| || ||||| || || ||||| |||||||| Sbjct: 23275 agactggctatgttggccttaagaatcaaggggctacatgctacatgaattctcttct 23218
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatgacatgccatctgggagtattcctttag 516 |||||||||| |||||||||||||| |||||||| | || | ||||| || ||||| | Sbjct: 147839 aggctgtataccatatgccaactacagagaatgatacaccttgcgggagcatccctttgg 147780 Query: 517 ccctgcagagccttttctacaagctccagtatagcgacaatagtgtagctacaaaagagt 576 | |||| || ||||||| ||| || ||| |||| ||||||||||| ||||||||||| Sbjct: 147779 ctttgcaaagtcttttctgcaaacttcagcatagtgacaatagtgtttctacaaaagagc 147720 Query: 577 tgactaaatctttcgggtgggacacttatgattctttcatgcagcatgatgtgcaaga 634 | || |||||||| || ||||| || |||||||||| ||||||||||||| ||||| Sbjct: 147719 ttaccaaatcttttggatgggataccgttgattctttcctgcagcatgatgttcaaga 147662 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 307 ttgaagctgaggttgctgttcgcaaaatggttgactattggacttatgactcgaaaaagg 366 |||| |||||||||||||| || ||||| ||||| | |||| |||||| || ||||||| Sbjct: 148061 ttgaggctgaggttgctgtgcgtaaaatagttgatttctggaattatgattccaaaaagg 148002 Query: 367 aaacaggttatgttggtctcaagaatcagggtgctacctgttatatgaactctcttct 424 | || || |||||||| || |||||||| || ||||| || || ||||| |||||||| Sbjct: 148001 agactggctatgttggccttaagaatcaaggggctacatgctacatgaattctcttct 147944
>dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18 Length = 80099 Score = 91.7 bits (46), Expect = 3e-15 Identities = 184/230 (80%) Strand = Plus / Minus Query: 198 caacatcagtttaatgcacgtgagagtgactggggtttcacatcttttatgcctctgagt 257 |||||||| || |||||| | || || |||||||| || ||||| || |||||||| || Sbjct: 2928 caacatcaattcaatgcaagagaaagcgactgggggtttacatcattcatgcctctcagc 2869 Query: 258 gagctgtatgacccaagtaggggctatctcgtgaatgatactgttgttgttgaagctgag 317 ||||| ||||| || | | | || ||| | |||||||| |||||| | |||||||||| Sbjct: 2868 gagctctatgaacccactcgaggatatttagtgaatgacactgttctgattgaagctgaa 2809 Query: 318 gttgctgttcgcaaaatggttgactattggacttatgactcgaaaaaggaaacaggttat 377 |||||||| || ||| | |||| |||||| | |||||||| ||||| || ||||||| | Sbjct: 2808 gttgctgtgcgtaaagttcttgattattggtcatatgactcaaaaaaagagacaggtttt 2749 Query: 378 gttggtctcaagaatcagggtgctacctgttatatgaactctcttctgca 427 ||||| || || || || |||||||||||||| ||||| ||||| ||||| Sbjct: 2748 gttggactaaaaaaccaaggtgctacctgttacatgaattctctcctgca 2699 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 558 agtgtagctacaaaagagttgactaaatctttcgggtgggacacttatgattctttcatg 617 |||||||| ||||| ||| |||| || || || || ||||| || ||||||||||| ||| Sbjct: 2467 agtgtagcgacaaaggagctgacaaagtcgtttggttgggatacatatgattcttttatg 2408 Query: 618 cagcatgatgtgcaagagctcaacagagttct 649 || |||||||| ||||| |||||||||||||| Sbjct: 2407 caacatgatgtacaagaactcaacagagttct 2376 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 45 atttttcccaagggaaataatgtggaccatctctcgatgtacttggatgttgc 97 ||||||||||| ||||| ||||| |||||| | || ||||||||||||||||| Sbjct: 3399 atttttcccaaaggaaacaatgtcgaccatttgtcaatgtacttggatgttgc 3347 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 atatgaactctcttctgcaa 428 |||||||||||||||||||| Sbjct: 67608 atatgaactctcttctgcaa 67589
>ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.1 mRNA, complete cds Length = 3898 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 534 tacaagctccagtatagcgacaatagtgtagctacaaaagagttgactaaatctttcggg 593 ||||||||||| || | |||| |||||| || ||||||||| |||| || || || || Sbjct: 860 tacaagctccaatacaatgacactagtgttgcaacaaaagagctgacaaagtcgtttggt 919 Query: 594 tgggacacttatgattctttcatgcagcatgatgtgcaagagctcaa 640 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 920 tgggatacatatgattccttcatgcagcatgatgtgcaagaactcaa 966 Score = 77.8 bits (39), Expect = 4e-11 Identities = 162/203 (79%) Strand = Plus / Plus Query: 288 gtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgactattgg 347 ||||||||||||||| | ||||||||||| || ||||| || || | |||| || ||| Sbjct: 614 gtgaatgatactgttttggttgaagctgaagtcgctgtacgtaaggttcttgattactgg 673 Query: 348 acttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgctacctgt 407 | |||||||| ||||| || || |||| |||||| |||||||| || ||||| || || Sbjct: 674 tcatatgactctaaaaaagagactggttttgttggactcaagaaccaaggtgcaacatgc 733 Query: 408 tatatgaactctcttctgcaaaccctgtatcatatgccttactttcggaaggctgtatat 467 || ||||| ||||| || || || || || || || |||||||| | ||||||||||| Sbjct: 734 tacatgaattctctcctacagacactataccacataccttacttcagaaaggctgtatac 793 Query: 468 catatgccaactactgagaatga 490 || |||||||| ||||||||||| Sbjct: 794 cacatgccaacaactgagaatga 816
>ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.2 mRNA, complete cds Length = 3897 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 534 tacaagctccagtatagcgacaatagtgtagctacaaaagagttgactaaatctttcggg 593 ||||||||||| || | |||| |||||| || ||||||||| |||| || || || || Sbjct: 859 tacaagctccaatacaatgacactagtgttgcaacaaaagagctgacaaagtcgtttggt 918 Query: 594 tgggacacttatgattctttcatgcagcatgatgtgcaagagctcaa 640 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 919 tgggatacatatgattccttcatgcagcatgatgtgcaagaactcaa 965 Score = 77.8 bits (39), Expect = 4e-11 Identities = 162/203 (79%) Strand = Plus / Plus Query: 288 gtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgactattgg 347 ||||||||||||||| | ||||||||||| || ||||| || || | |||| || ||| Sbjct: 613 gtgaatgatactgttttggttgaagctgaagtcgctgtacgtaaggttcttgattactgg 672 Query: 348 acttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgctacctgt 407 | |||||||| ||||| || || |||| |||||| |||||||| || ||||| || || Sbjct: 673 tcatatgactctaaaaaagagactggttttgttggactcaagaaccaaggtgcaacatgc 732 Query: 408 tatatgaactctcttctgcaaaccctgtatcatatgccttactttcggaaggctgtatat 467 || ||||| ||||| || || || || || || || |||||||| | ||||||||||| Sbjct: 733 tacatgaattctctcctacagacactataccacataccttacttcagaaaggctgtatac 792 Query: 468 catatgccaactactgagaatga 490 || |||||||| ||||||||||| Sbjct: 793 cacatgccaacaactgagaatga 815
>gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3379 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 534 tacaagctccagtatagcgacaatagtgtagctacaaaagagttgactaaatctttcggg 593 ||||||||||| || | |||| |||||| || ||||||||| |||| || || || || Sbjct: 748 tacaagctccaatacaatgacactagtgttgcaacaaaagagctgacaaagtcgtttggt 807 Query: 594 tgggacacttatgattctttcatgcagcatgatgtgcaagagctcaa 640 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 808 tgggatacatatgattccttcatgcagcatgatgtgcaagaactcaa 854 Score = 77.8 bits (39), Expect = 4e-11 Identities = 162/203 (79%) Strand = Plus / Plus Query: 288 gtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgactattgg 347 ||||||||||||||| | ||||||||||| || ||||| || || | |||| || ||| Sbjct: 502 gtgaatgatactgttttggttgaagctgaagtcgctgtacgtaaggttcttgattactgg 561 Query: 348 acttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgctacctgt 407 | |||||||| ||||| || || |||| |||||| |||||||| || ||||| || || Sbjct: 562 tcatatgactctaaaaaagagactggttttgttggactcaagaaccaaggtgcaacatgc 621 Query: 408 tatatgaactctcttctgcaaaccctgtatcatatgccttactttcggaaggctgtatat 467 || ||||| ||||| || || || || || || || |||||||| | ||||||||||| Sbjct: 622 tacatgaattctctcctacagacactataccacataccttacttcagaaaggctgtatac 681 Query: 468 catatgccaactactgagaatga 490 || |||||||| ||||||||||| Sbjct: 682 cacatgccaacaactgagaatga 704
>gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3890 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 534 tacaagctccagtatagcgacaatagtgtagctacaaaagagttgactaaatctttcggg 593 ||||||||||| || | |||| |||||| || ||||||||| |||| || || || || Sbjct: 859 tacaagctccaatacaatgacactagtgttgcaacaaaagagctgacaaagtcgtttggt 918 Query: 594 tgggacacttatgattctttcatgcagcatgatgtgcaagagctcaa 640 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 919 tgggatacatatgattccttcatgcagcatgatgtgcaagaactcaa 965 Score = 77.8 bits (39), Expect = 4e-11 Identities = 162/203 (79%) Strand = Plus / Plus Query: 288 gtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgactattgg 347 ||||||||||||||| | ||||||||||| || ||||| || || | |||| || ||| Sbjct: 613 gtgaatgatactgttttggttgaagctgaagtcgctgtacgtaaggttcttgattactgg 672 Query: 348 acttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgctacctgt 407 | |||||||| ||||| || || |||| |||||| |||||||| || ||||| || || Sbjct: 673 tcatatgactctaaaaaagagactggttttgttggactcaagaaccaaggtgcaacatgc 732 Query: 408 tatatgaactctcttctgcaaaccctgtatcatatgccttactttcggaaggctgtatat 467 || ||||| ||||| || || || || || || || |||||||| | ||||||||||| Sbjct: 733 tacatgaattctctcctacagacactataccacataccttacttcagaaaggctgtatac 792 Query: 468 catatgccaactactgagaatga 490 || |||||||| ||||||||||| Sbjct: 793 cacatgccaacaactgagaatga 815
>gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific protease 12 (UBP12) mRNA, complete cds Length = 3427 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 534 tacaagctccagtatagcgacaatagtgtagctacaaaagagttgactaaatctttcggg 593 ||||||||||| || | |||| |||||| || ||||||||| |||| || || || || Sbjct: 787 tacaagctccaatacaatgacactagtgttgcaacaaaagagctgacaaagtcgtttggt 846 Query: 594 tgggacacttatgattctttcatgcagcatgatgtgcaagagctcaa 640 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 847 tgggatacatatgattccttcatgcagcatgatgtgcaagaactcaa 893 Score = 77.8 bits (39), Expect = 4e-11 Identities = 162/203 (79%) Strand = Plus / Plus Query: 288 gtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgactattgg 347 ||||||||||||||| | ||||||||||| || ||||| || || | |||| || ||| Sbjct: 541 gtgaatgatactgttttggttgaagctgaagtcgctgtacgtaaggttcttgattactgg 600 Query: 348 acttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgctacctgt 407 | |||||||| ||||| || || |||| |||||| |||||||| || ||||| || || Sbjct: 601 tcatatgactctaaaaaagagactggttttgttggactcaagaaccaaggtgcaacatgc 660 Query: 408 tatatgaactctcttctgcaaaccctgtatcatatgccttactttcggaaggctgtatat 467 || ||||| ||||| || || || || || || || |||||||| | ||||||||||| Sbjct: 661 tacatgaattctctcctacagacactataccacataccttacttcagaaaggctgtatac 720 Query: 468 catatgccaactactgagaatga 490 || |||||||| ||||||||||| Sbjct: 721 cacatgccaacaactgagaatga 743
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7 Length = 74350 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 534 tacaagctccagtatagcgacaatagtgtagctacaaaagagttgactaaatctttcggg 593 ||||||||||| || | |||| |||||| || ||||||||| |||| || || || || Sbjct: 50662 tacaagctccaatacaatgacactagtgttgcaacaaaagagctgacaaagtcgtttggt 50603 Query: 594 tgggacacttatgattctttcatgcagcatgatgtgcaagagctcaa 640 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 50602 tgggatacatatgattccttcatgcagcatgatgtgcaagaactcaa 50556 Score = 52.0 bits (26), Expect = 0.002 Identities = 107/134 (79%) Strand = Plus / Minus Query: 288 gtgaatgatactgttgttgttgaagctgaggttgctgttcgcaaaatggttgactattgg 347 ||||||||||||||| | ||||||||||| || ||||| || || | |||| || ||| Sbjct: 51005 gtgaatgatactgttttggttgaagctgaagtcgctgtacgtaaggttcttgattactgg 50946 Query: 348 acttatgactcgaaaaaggaaacaggttatgttggtctcaagaatcagggtgctacctgt 407 | |||||||| ||||| || || |||| |||||| |||||||| || ||||| || || Sbjct: 50945 tcatatgactctaaaaaagagactggttttgttggactcaagaaccaaggtgcaacatgc 50886 Query: 408 tatatgaactctct 421 || ||||| ||||| Sbjct: 50885 tacatgaattctct 50872 Score = 44.1 bits (22), Expect = 0.58 Identities = 31/34 (91%) Strand = Plus / Minus Query: 457 aggctgtatatcatatgccaactactgagaatga 490 |||||||||| || |||||||| ||||||||||| Sbjct: 50739 aggctgtataccacatgccaacaactgagaatga 50706
>emb|AL139402.11| Human DNA sequence from clone RP4-808F24 on chromosome Xp11.23-11.4, complete sequence Length = 10959 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 414 aactctcttctgcaaaccctgt 435 |||||||||||||||||||||| Sbjct: 10588 aactctcttctgcaaaccctgt 10567
>ref|NM_112036.2| Arabidopsis thaliana ATP binding / microtubule motor AT3G12020 mRNA, complete cds Length = 3093 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 atatgaactctcttctgcaa 428 |||||||||||||||||||| Sbjct: 2619 atatgaactctcttctgcaa 2600
>ref|XM_633375.1| Dictyostelium discoideum hypothetical protein (DDB0186133), partial mRNA Length = 918 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gttgttgttgaagctgaggt 319 |||||||||||||||||||| Sbjct: 278 gttgttgttgaagctgaggt 259
>ref|XM_631712.1| Dictyostelium discoideum putative countin receptor Cnr13 (DDB0229880), partial mRNA Length = 4920 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tgatactgttgttgttgaag 312 |||||||||||||||||||| Sbjct: 4244 tgatactgttgttgttgaag 4225
>gb|AC108433.9| Mus musculus chromosome 18, clone RP23-194M19, complete sequence Length = 188997 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tttcacatcttttatgcctc 252 |||||||||||||||||||| Sbjct: 62067 tttcacatcttttatgcctc 62048
>ref|XM_453038.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C18799g predicted mRNA Length = 1482 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ctgttgttgttgaagctgag 317 |||||||||||||||||||| Sbjct: 479 ctgttgttgttgaagctgag 498
>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence Length = 167384 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 ggtgctacctgttatatgaactct 419 |||||||| ||||||||||||||| Sbjct: 39688 ggtgctacttgttatatgaactct 39665
>ref|XM_386530.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06354.1) partial mRNA Length = 1785 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gcctctgagtgagctgtatg 267 |||||||||||||||||||| Sbjct: 504 gcctctgagtgagctgtatg 523
>gb|AC117702.10| Mus musculus chromosome 10, clone RP23-464I2, complete sequence Length = 147559 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aagatactcaacatcagttt 209 |||||||||||||||||||| Sbjct: 8491 aagatactcaacatcagttt 8510
>gb|AC133193.3| Mus musculus BAC clone RP23-396L1 from chromosome 2, complete sequence Length = 180931 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tccatcagaagtatacagca 185 |||||||||||||||||||| Sbjct: 117522 tccatcagaagtatacagca 117541
>gb|AY216461.1| Gibberella moniliformis pH regulatory protein (PAC1) gene, complete cds Length = 2375 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tgttgttgttgaagctgagg 318 |||||||||||||||||||| Sbjct: 390 tgttgttgttgaagctgagg 371
>emb|AL033529.25|HS27O5 Human DNA sequence from clone RP1-27O5 on chromosome 1p34.1-35.3 Contains the 3' end of the ZBTB8 gene for zinc finger and BTB domain containing 8, the 3' end of the gene for archease (ARCH) and two CpG islands, complete sequence Length = 147167 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gtatgacccaagtaggggct 282 |||||||||||||||||||| Sbjct: 37284 gtatgacccaagtaggggct 37265
>ref|XM_785167.1| PREDICTED: Strongylocentrotus purpuratus similar to Flightless-I protein homolog (LOC585336), partial mRNA Length = 2225 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tgttgttgaagctgaggttg 321 |||||||||||||||||||| Sbjct: 229 tgttgttgaagctgaggttg 210
>ref|XM_780786.1| PREDICTED: Strongylocentrotus purpuratus similar to sno, strawberry notch homolog 1 (LOC580748), mRNA Length = 4005 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tgttatatgaactctcttct 424 |||||||||||||||||||| Sbjct: 2778 tgttatatgaactctcttct 2759
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ctgttgttgttgaagctgag 317 |||||||||||||||||||| Sbjct: 1668317 ctgttgttgttgaagctgag 1668298
>emb|AJ307017.1|MMU307017 Mus musculus mRNA for putative ubiquitin-specific protease (Usp9y gene) Length = 8117 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 ggtgctacctgttatatgaactct 419 |||||||| ||||||||||||||| Sbjct: 5111 ggtgctacttgttatatgaactct 5134
>gb|AC092705.3| Homo sapiens chromosome 18, clone RP11-886H22, complete sequence Length = 137416 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 507 attcctttagccctgcagagcctt 530 |||||| ||||||||||||||||| Sbjct: 114791 attcctctagccctgcagagcctt 114768
>gb|AY125958.1| Fusarium oxysporum pH transcription factor (pacC) gene, complete cds Length = 3989 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tgttgttgttgaagctgagg 318 |||||||||||||||||||| Sbjct: 1314 tgttgttgttgaagctgagg 1295
>gb|AC025280.5| Homo sapiens chromosome 16 clone RP11-254F19, complete sequence Length = 174714 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 catcttttatgcctctgagt 257 |||||||||||||||||||| Sbjct: 164742 catcttttatgcctctgagt 164723
>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence Length = 196840 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 tttcccaagggaaataatgtggac 71 |||||||||||||||||| ||||| Sbjct: 130480 tttcccaagggaaataatatggac 130503
>gb|AC069473.4|AC069473 Arabidopsis thaliana chromosome 3 BAC T21B14 genomic sequence, complete sequence Length = 85657 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 atatgaactctcttctgcaa 428 |||||||||||||||||||| Sbjct: 48460 atatgaactctcttctgcaa 48479
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gctcggatatgttcgtcgtt 20 |||||||||||||||||||| Sbjct: 175139 gctcggatatgttcgtcgtt 175120
>dbj|AP002035.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F6H5 Length = 95681 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 actgttgttgttgaagctga 316 |||||||||||||||||||| Sbjct: 51745 actgttgttgttgaagctga 51764
>dbj|AK117552.1| Arabidopsis thaliana At3g12020 mRNA for unknown protein, complete cds, clone: RAFL17-20-E09 Length = 1808 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 atatgaactctcttctgcaa 428 |||||||||||||||||||| Sbjct: 1155 atatgaactctcttctgcaa 1136
>gb|AC145393.4| Mus musculus BAC clone RP24-208N6 from Y, complete sequence Length = 167299 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 ggtgctacctgttatatgaactct 419 |||||||| ||||||||||||||| Sbjct: 140972 ggtgctacttgttatatgaactct 140949
>emb|AJ514259.1|GFU514259 Gibberella fujikuroi pacC gene for transcription factor PACC, exons 1-4 Length = 3595 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tgttgttgttgaagctgagg 318 |||||||||||||||||||| Sbjct: 1198 tgttgttgttgaagctgagg 1179
>gb|AC113207.8| Mus musculus chromosome 10, clone RP23-323O18, complete sequence Length = 237187 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aagatactcaacatcagttt 209 |||||||||||||||||||| Sbjct: 221551 aagatactcaacatcagttt 221570
>emb|BX284624.4| Mouse DNA sequence from clone RP23-299A2 on chromosome 2, complete sequence Length = 209836 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tccatcagaagtatacagca 185 |||||||||||||||||||| Sbjct: 135369 tccatcagaagtatacagca 135350
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 cagagccttttctacaagct 541 |||||||||||||||||||| Sbjct: 2775327 cagagccttttctacaagct 2775308 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 cagagccttttctacaagct 541 |||||||||||||||||||| Sbjct: 2566638 cagagccttttctacaagct 2566657
>ref|NM_148943.1| Mus musculus ubiquitin specific peptidase 9, Y chromosome (Usp9y), mRNA Length = 8117 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 ggtgctacctgttatatgaactct 419 |||||||| ||||||||||||||| Sbjct: 5111 ggtgctacttgttatatgaactct 5134 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,826,744 Number of Sequences: 3902068 Number of extensions: 5826744 Number of successful extensions: 89798 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89430 Number of HSP's gapped (non-prelim): 354 length of query: 667 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 644 effective length of database: 17,143,297,704 effective search space: 11040283721376 effective search space used: 11040283721376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
