| Clone Name | bags29h21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 115 bits (58), Expect = 2e-22 Identities = 332/423 (78%), Gaps = 9/423 (2%) Strand = Plus / Minus Query: 95 agtttctttcggaaggaaaaagtaacatcgaaactctagcaggatttatcaccgatggaa 154 ||||||| ||| |||||||||| ||| | | || |||||||||||| | | | |||| Sbjct: 136909 agtttctctcgaaaggaaaaagcaacttgcagacgctagcaggatttgctagcaacggaa 136850 Query: 155 gtgaagggtttcttcatctcatgggtcatatgaatagattgaggaaggtgaagatttggt 214 | ||||||||||| ||||| ||| | | ||||||| ||||| ||| |||||||||||| Sbjct: 136849 gcgaagggtttctgcatcttatgaggtacatgaataagttgagaaagttgaagatttggt 136790 Query: 215 gtaagccatctgcaactgcaagtagcactgactggtccgatcttatgagggccattcaac 274 ||| | | | ||||| ||||||| || ||| | ||||||| | ||||||||||| Sbjct: 136789 gtacgtcgt------ctgcaggtagcaccgattggactgatcttagggaggccattcaac 136736 Query: 275 agttcattcaggacaaaaaggatgaaaacagtgatactgcacgttctctatcgcttcatt 334 ||||||||| ||| ||||||| | ||| | || || | |||||| |||||||||||| Sbjct: 136735 agttcattctggatgaaaaggaagcaaatattggta---cccgttctttatcgcttcatt 136679 Query: 335 tcgatgaatgctctggagatttcctggattccatacaaggacccagctacctcagctctc 394 || || |||||||| |||| | ||||| || ||| |||| ||||||||||||| Sbjct: 136678 tcactggatgctctgaagatgcgataaattccttaaaagaaccctgctacctcagctcgt 136619 Query: 395 tgaaattacatggcaacttgactaccttgcctcagtttgttgtatcacttcggggtctca 454 ||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||| Sbjct: 136618 tgaaattacatggcaacttcccccaattgcctcagtttgttacatcacttcgtggtctca 136559 Query: 455 aggagctttgcctttcgaatagtaaacttacagctggtgttcttgaagctttgagtagtt 514 |||||||||||||||| || |||| ||||| | || |||||||||| ||||||| || Sbjct: 136558 aggagctttgcctttcatctactaaatttacaacaggccttcttgaagccttgagtaatt 136499 Query: 515 tga 517 ||| Sbjct: 136498 tga 136496
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 115 bits (58), Expect = 2e-22 Identities = 332/423 (78%), Gaps = 9/423 (2%) Strand = Plus / Plus Query: 95 agtttctttcggaaggaaaaagtaacatcgaaactctagcaggatttatcaccgatggaa 154 ||||||| ||| |||||||||| ||| | | || |||||||||||| | | | |||| Sbjct: 78715 agtttctctcgaaaggaaaaagcaacttgcagacgctagcaggatttgctagcaacggaa 78774 Query: 155 gtgaagggtttcttcatctcatgggtcatatgaatagattgaggaaggtgaagatttggt 214 | ||||||||||| ||||| ||| | | ||||||| ||||| ||| |||||||||||| Sbjct: 78775 gcgaagggtttctgcatcttatgaggtacatgaataagttgagaaagttgaagatttggt 78834 Query: 215 gtaagccatctgcaactgcaagtagcactgactggtccgatcttatgagggccattcaac 274 ||| | | | ||||| ||||||| || ||| | ||||||| | ||||||||||| Sbjct: 78835 gtacgtcgt------ctgcaggtagcaccgattggactgatcttagggaggccattcaac 78888 Query: 275 agttcattcaggacaaaaaggatgaaaacagtgatactgcacgttctctatcgcttcatt 334 ||||||||| ||| ||||||| | ||| | || || | |||||| |||||||||||| Sbjct: 78889 agttcattctggatgaaaaggaagcaaatattggta---cccgttctttatcgcttcatt 78945 Query: 335 tcgatgaatgctctggagatttcctggattccatacaaggacccagctacctcagctctc 394 || || |||||||| |||| | ||||| || ||| |||| ||||||||||||| Sbjct: 78946 tcactggatgctctgaagatgcgataaattccttaaaagaaccctgctacctcagctcgt 79005 Query: 395 tgaaattacatggcaacttgactaccttgcctcagtttgttgtatcacttcggggtctca 454 ||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||| Sbjct: 79006 tgaaattacatggcaacttcccccaattgcctcagtttgttacatcacttcgtggtctca 79065 Query: 455 aggagctttgcctttcgaatagtaaacttacagctggtgttcttgaagctttgagtagtt 514 |||||||||||||||| || |||| ||||| | || |||||||||| ||||||| || Sbjct: 79066 aggagctttgcctttcatctactaaatttacaacaggccttcttgaagccttgagtaatt 79125 Query: 515 tga 517 ||| Sbjct: 79126 tga 79128
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 115 bits (58), Expect = 2e-22 Identities = 332/423 (78%), Gaps = 9/423 (2%) Strand = Plus / Minus Query: 95 agtttctttcggaaggaaaaagtaacatcgaaactctagcaggatttatcaccgatggaa 154 ||||||| ||| |||||||||| ||| | | || |||||||||||| | | | |||| Sbjct: 6465515 agtttctctcgaaaggaaaaagcaacttgcagacgctagcaggatttgctagcaacggaa 6465456 Query: 155 gtgaagggtttcttcatctcatgggtcatatgaatagattgaggaaggtgaagatttggt 214 | ||||||||||| ||||| ||| | | ||||||| ||||| ||| |||||||||||| Sbjct: 6465455 gcgaagggtttctgcatcttatgaggtacatgaataagttgagaaagttgaagatttggt 6465396 Query: 215 gtaagccatctgcaactgcaagtagcactgactggtccgatcttatgagggccattcaac 274 ||| | | | ||||| ||||||| || ||| | ||||||| | ||||||||||| Sbjct: 6465395 gtacgtcgt------ctgcaggtagcaccgattggactgatcttagggaggccattcaac 6465342 Query: 275 agttcattcaggacaaaaaggatgaaaacagtgatactgcacgttctctatcgcttcatt 334 ||||||||| ||| ||||||| | ||| | || || | |||||| |||||||||||| Sbjct: 6465341 agttcattctggatgaaaaggaagcaaatattggta---cccgttctttatcgcttcatt 6465285 Query: 335 tcgatgaatgctctggagatttcctggattccatacaaggacccagctacctcagctctc 394 || || |||||||| |||| | ||||| || ||| |||| ||||||||||||| Sbjct: 6465284 tcactggatgctctgaagatgcgataaattccttaaaagaaccctgctacctcagctcgt 6465225 Query: 395 tgaaattacatggcaacttgactaccttgcctcagtttgttgtatcacttcggggtctca 454 ||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||| Sbjct: 6465224 tgaaattacatggcaacttcccccaattgcctcagtttgttacatcacttcgtggtctca 6465165 Query: 455 aggagctttgcctttcgaatagtaaacttacagctggtgttcttgaagctttgagtagtt 514 |||||||||||||||| || |||| ||||| | || |||||||||| ||||||| || Sbjct: 6465164 aggagctttgcctttcatctactaaatttacaacaggccttcttgaagccttgagtaatt 6465105 Query: 515 tga 517 ||| Sbjct: 6465104 tga 6465102 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||| |||||||||||||||| || || || |||| |||||||| || || ||||||| Sbjct: 26816675 aaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcata 26816734 Query: 185 tgaatagattgaggaaggtgaagatttggtg 215 |||| | | |||||||||| ||||| ||||| Sbjct: 26816735 tgaaaaaactgaggaaggttaagatatggtg 26816765 Score = 48.1 bits (24), Expect = 0.035 Identities = 78/96 (81%) Strand = Plus / Plus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||||||||||| |||||||| | || | ||||| ||||| || || |||||||||| Sbjct: 26946561 aaactctagcaggttttatcactggtgagaacgaaggatttctgcaacttatgggtcata 26946620 Query: 185 tgaatagattgaggaaggtgaagatttggtgtaagc 220 |||| | | |||| ||||| ||||| ||||| |||| Sbjct: 26946621 tgaaaaaactgagaaaggttaagatatggtgcaagc 26946656 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 130 ctagcaggatttatcaccgatggaagtgaagggtttc 166 ||||||||||||| ||| || ||||||||||| |||| Sbjct: 6546918 ctagcaggatttagcacagacggaagtgaaggatttc 6546954
>dbj|AK066950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090P15, full insert sequence Length = 3712 Score = 115 bits (58), Expect = 2e-22 Identities = 290/367 (79%), Gaps = 9/367 (2%) Strand = Plus / Plus Query: 151 ggaagtgaagggtttcttcatctcatgggtcatatgaatagattgaggaaggtgaagatt 210 ||||| ||||||||||| ||||| ||| | | ||||||| ||||| ||| |||||||| Sbjct: 2357 ggaagcgaagggtttctgcatcttatgaggtacatgaataagttgagaaagttgaagatt 2416 Query: 211 tggtgtaagccatctgcaactgcaagtagcactgactggtccgatcttatgagggccatt 270 ||||||| | | | ||||| ||||||| || ||| | ||||||| | ||||||| Sbjct: 2417 tggtgtacgtcgt------ctgcaggtagcaccgattggactgatcttagggaggccatt 2470 Query: 271 caacagttcattcaggacaaaaaggatgaaaacagtgatactgcacgttctctatcgctt 330 ||||||||||||| ||| ||||||| | ||| | || || | |||||| |||||||| Sbjct: 2471 caacagttcattctggatgaaaaggaagcaaatattggta---cccgttctttatcgctt 2527 Query: 331 catttcgatgaatgctctggagatttcctggattccatacaaggacccagctacctcagc 390 |||||| || |||||||| |||| | ||||| || ||| |||| ||||||||||| Sbjct: 2528 catttcactggatgctctgaagatgcgataaattccttaaaagaaccctgctacctcagc 2587 Query: 391 tctctgaaattacatggcaacttgactaccttgcctcagtttgttgtatcacttcggggt 450 || ||||||||||||||||||| | ||||||||||||||| ||||||||| ||| Sbjct: 2588 tcgttgaaattacatggcaacttcccccaattgcctcagtttgttacatcacttcgtggt 2647 Query: 451 ctcaaggagctttgcctttcgaatagtaaacttacagctggtgttcttgaagctttgagt 510 |||||||||||||||||||| || |||| ||||| | || |||||||||| |||||| Sbjct: 2648 ctcaaggagctttgcctttcatctactaaatttacaacaggccttcttgaagccttgagt 2707 Query: 511 agtttga 517 | ||||| Sbjct: 2708 aatttga 2714
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 115 bits (58), Expect = 2e-22 Identities = 332/423 (78%), Gaps = 9/423 (2%) Strand = Plus / Minus Query: 95 agtttctttcggaaggaaaaagtaacatcgaaactctagcaggatttatcaccgatggaa 154 ||||||| ||| |||||||||| ||| | | || |||||||||||| | | | |||| Sbjct: 6531982 agtttctctcgaaaggaaaaagcaacttgcagacgctagcaggatttgctagcaacggaa 6531923 Query: 155 gtgaagggtttcttcatctcatgggtcatatgaatagattgaggaaggtgaagatttggt 214 | ||||||||||| ||||| ||| | | ||||||| ||||| ||| |||||||||||| Sbjct: 6531922 gcgaagggtttctgcatcttatgaggtacatgaataagttgagaaagttgaagatttggt 6531863 Query: 215 gtaagccatctgcaactgcaagtagcactgactggtccgatcttatgagggccattcaac 274 ||| | | | ||||| ||||||| || ||| | ||||||| | ||||||||||| Sbjct: 6531862 gtacgtcgt------ctgcaggtagcaccgattggactgatcttagggaggccattcaac 6531809 Query: 275 agttcattcaggacaaaaaggatgaaaacagtgatactgcacgttctctatcgcttcatt 334 ||||||||| ||| ||||||| | ||| | || || | |||||| |||||||||||| Sbjct: 6531808 agttcattctggatgaaaaggaagcaaatattggta---cccgttctttatcgcttcatt 6531752 Query: 335 tcgatgaatgctctggagatttcctggattccatacaaggacccagctacctcagctctc 394 || || |||||||| |||| | ||||| || ||| |||| ||||||||||||| Sbjct: 6531751 tcactggatgctctgaagatgcgataaattccttaaaagaaccctgctacctcagctcgt 6531692 Query: 395 tgaaattacatggcaacttgactaccttgcctcagtttgttgtatcacttcggggtctca 454 ||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||| Sbjct: 6531691 tgaaattacatggcaacttcccccaattgcctcagtttgttacatcacttcgtggtctca 6531632 Query: 455 aggagctttgcctttcgaatagtaaacttacagctggtgttcttgaagctttgagtagtt 514 |||||||||||||||| || |||| ||||| | || |||||||||| ||||||| || Sbjct: 6531631 aggagctttgcctttcatctactaaatttacaacaggccttcttgaagccttgagtaatt 6531572 Query: 515 tga 517 ||| Sbjct: 6531571 tga 6531569 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||| |||||||||||||||| || || || |||| |||||||| || || ||||||| Sbjct: 27143907 aaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcata 27143966 Query: 185 tgaatagattgaggaaggtgaagatttggtg 215 |||| | | |||||||||| ||||| ||||| Sbjct: 27143967 tgaaaaaactgaggaaggttaagatatggtg 27143997 Score = 48.1 bits (24), Expect = 0.035 Identities = 78/96 (81%) Strand = Plus / Plus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||||||||||| |||||||| | || | ||||| ||||| || || |||||||||| Sbjct: 27273614 aaactctagcaggttttatcactggtgagaacgaaggatttctgcaacttatgggtcata 27273673 Query: 185 tgaatagattgaggaaggtgaagatttggtgtaagc 220 |||| | | |||| ||||| ||||| ||||| |||| Sbjct: 27273674 tgaaaaaactgagaaaggttaagatatggtgcaagc 27273709 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 130 ctagcaggatttatcaccgatggaagtgaagggtttc 166 ||||||||||||| ||| || ||||||||||| |||| Sbjct: 6613385 ctagcaggatttagcacagacggaagtgaaggatttc 6613421
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||| |||||||||||||||| || || || |||| |||||||| || || ||||||| Sbjct: 121302 aaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcata 121361 Query: 185 tgaatagattgaggaaggtgaagatttggtg 215 |||| | | |||||||||| ||||| ||||| Sbjct: 121362 tgaaaaaactgaggaaggttaagatatggtg 121392
>gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence Length = 133291 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||| |||||||||||||||| || || || |||| |||||||| || || ||||||| Sbjct: 129053 aaactttagcaggatttatcactgacgggaggaaaggatttcttcaacttattggtcata 128994 Query: 185 tgaatagattgaggaaggtgaagatttggtg 215 |||| | | |||||||||| ||||| ||||| Sbjct: 128993 tgaaaaaactgaggaaggttaagatatggtg 128963
>gb|AC144734.1| Oryza sativa (japonica cultivar-group) chromosome 11 plasmid clone OSJNBa0026O24_C01, complete sequence Length = 2105 Score = 48.1 bits (24), Expect = 0.035 Identities = 78/96 (81%) Strand = Plus / Plus Query: 125 aaactctagcaggatttatcaccgatggaagtgaagggtttcttcatctcatgggtcata 184 ||||||||||||| |||||||| | || | ||||| ||||| || || |||||||||| Sbjct: 1341 aaactctagcaggttttatcactggtgagaacgaaggatttctgcaacttatgggtcata 1400 Query: 185 tgaatagattgaggaaggtgaagatttggtgtaagc 220 |||| | | |||| ||||| ||||| ||||| |||| Sbjct: 1401 tgaaaaaactgagaaaggttaagatatggtgcaagc 1436
>ref|XM_866540.1| PREDICTED: Bos taurus similar to olfactory receptor 1395 (LOC614895), mRNA Length = 1098 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 411 cttgactaccttgcctcagtttg 433 ||||||||||||||||||||||| Sbjct: 1011 cttgactaccttgcctcagtttg 1033
>emb|AL358937.16| Human DNA sequence from clone RP11-60I3 on chromosome 9 Contains the 3' end of the NR4A3 gene for nuclear receptor subfamily 4 group A member 3, the STX17 gene for syntaxin 17, the 3' end of the TXNDC4 gene for thioredoxin domain containing 4 (endoplasmic reticulum) (ERP44, ERp44,KIAA0573) and a CpG island, complete sequence Length = 146889 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 30 gatttcaggcaaagtctataaaaagag 56 |||||||| |||||||||||||||||| Sbjct: 61013 gatttcagacaaagtctataaaaagag 61039
>gb|AC096749.2| Homo sapiens BAC clone RP11-415L23 from 4, complete sequence Length = 112187 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 ttcctggattccatacaaggacccag 380 ||||||||| |||||||||||||||| Sbjct: 104901 ttcctggatgccatacaaggacccag 104926
>gb|AC159028.3| Pan troglodytes BAC clone CH251-413M12 from chromosome unknown, complete sequence Length = 172935 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 ttcctggattccatacaaggacccag 380 ||||||||| |||||||||||||||| Sbjct: 27520 ttcctggatgccatacaaggacccag 27545
>gb|U34374.1|HSTECTXT08 Human tyrosine kinase TXK (txk) gene, exons 9 and 10 Length = 6316 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 355 ttcctggattccatacaaggacccag 380 ||||||||| |||||||||||||||| Sbjct: 5170 ttcctggatgccatacaaggacccag 5145
>gb|U07794.1|HSTXK Human tyrosine kinase (TXK) gene, exon 12 and 13, partial cds Length = 5189 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 355 ttcctggattccatacaaggacccag 380 ||||||||| |||||||||||||||| Sbjct: 4043 ttcctggatgccatacaaggacccag 4018
>gb|AC118230.6| Mus musculus chromosome 10, clone RP23-462F16, complete sequence Length = 204781 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 479 aacttacagctggtgttcttgaagc 503 |||||||||||||| |||||||||| Sbjct: 71241 aacttacagctggtcttcttgaagc 71217
>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a novel pseudogene, complete sequence Length = 177796 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 caaaaaggatgaaaacagtga 308 ||||||||||||||||||||| Sbjct: 45184 caaaaaggatgaaaacagtga 45204
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 130 ctagcaggatttatcaccgatggaagtgaagggtttc 166 ||||||||||||| ||| || ||||||||||| |||| Sbjct: 6128 ctagcaggatttagcacagacggaagtgaaggatttc 6164
>gb|AC104077.2| Homo sapiens BAC clone RP11-413P19 from 4, complete sequence Length = 122108 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tttcctcaaaaagaagacagg 80 ||||||||||||||||||||| Sbjct: 12600 tttcctcaaaaagaagacagg 12580
>gb|AC159653.8| Mus musculus 10 BAC RP23-479H2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 168480 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 479 aacttacagctggtgttcttgaagc 503 |||||||||||||| |||||||||| Sbjct: 28657 aacttacagctggtcttcttgaagc 28681
>gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y, complete sequence Length = 116795 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 caaaaaggatgaaaacagtga 308 ||||||||||||||||||||| Sbjct: 43979 caaaaaggatgaaaacagtga 43999
>emb|AL732474.8| Mouse DNA sequence from clone RP23-180I2 on chromosome 4, complete sequence Length = 151555 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 aactctagcaggatttatcac 146 ||||||||||||||||||||| Sbjct: 70639 aactctagcaggatttatcac 70619
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acaaaaaggatgaaaacagt 306 |||||||||||||||||||| Sbjct: 2068261 acaaaaaggatgaaaacagt 2068280
>gb|AC163667.3| Mus musculus BAC clone RP23-53N20 from chromosome 13, complete sequence Length = 220804 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 gtgttttcctcaaaaagaagacag 79 ||||||||| |||||||||||||| Sbjct: 73689 gtgttttccacaaaaagaagacag 73666
>gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome 7, complete sequence Length = 165049 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 agagtttaggatttcaggca 40 |||||||||||||||||||| Sbjct: 86783 agagtttaggatttcaggca 86764
>gb|AC136363.2| Homo sapiens chromosome 17, clone RP11-18L18, complete sequence Length = 87532 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 agtctataaaaagagtgttt 61 |||||||||||||||||||| Sbjct: 59149 agtctataaaaagagtgttt 59130
>gb|AC129906.2| Homo sapiens chromosome 8, clone CTC-820M8, complete sequence Length = 119122 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 taggatttcaggcaaagtct 46 |||||||||||||||||||| Sbjct: 19817 taggatttcaggcaaagtct 19798
>gb|AC105142.4| Homo sapiens chromosome 8, clone CTD-3240I20, complete sequence Length = 112106 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 taggatttcaggcaaagtct 46 |||||||||||||||||||| Sbjct: 46451 taggatttcaggcaaagtct 46470
>emb|CR385075.8| Zebrafish DNA sequence from clone DKEY-281M4 in linkage group 17, complete sequence Length = 136271 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agacaggcaatgaagtacag 93 |||||||||||||||||||| Sbjct: 101481 agacaggcaatgaagtacag 101500
>emb|AL359960.23| Human DNA sequence from clone RP11-298K24 on chromosome 10, complete sequence Length = 69113 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 agtgttttcctcaaaaagaa 74 |||||||||||||||||||| Sbjct: 15709 agtgttttcctcaaaaagaa 15690
>emb|AL358116.7| Human DNA sequence from clone RP11-108H13 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 85821 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 61187 gcaaattctataaaaagagtgttt 61164 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 57783 gcaaattctataaaaagagtgttt 57760
>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG island, complete sequence Length = 191652 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 accttcagtatttaaaactg 540 |||||||||||||||||||| Sbjct: 186844 accttcagtatttaaaactg 186825
>emb|AL353626.5| Human DNA sequence from clone RP11-318K12 on chromosome 9 Contains a novel gene, a pseudogene similar to part of membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) (M17S2), a pseudogene similar to part of novel gene (ankyrin-related UNQ2430) and a CpG island, complete sequence Length = 176470 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 124974 gcaaattctataaaaagagtgttt 124951
>emb|AL139327.18| Human DNA sequence from clone RP11-408E5 on chromosome 13q11-12.2 Contains an FSH primary respone homolog 1 (FSHPRH1) pseudogene, a paraspeckle protein 1 alpha pseudogene,a novel gene, the TUBA2 gene for tubulin alpha 2, two novel pseudogenes and a gene for a novel protein similar to DMPK-like CDC42-binding protein kinase beta (CDC42BPB), complete sequence Length = 149559 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttttcctcaaaaagaagaca 78 |||||||||||||||||||| Sbjct: 47370 ttttcctcaaaaagaagaca 47389
>gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, complete sequence Length = 208551 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tctataaaaagagtgttttc 63 |||||||||||||||||||| Sbjct: 81102 tctataaaaagagtgttttc 81121
>gb|AC119042.9| Homo sapiens 12 BAC RP11-657P13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112400 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 agtctataaaaagagtgttt 61 |||||||||||||||||||| Sbjct: 19003 agtctataaaaagagtgttt 19022
>emb|BX001034.6| Human DNA sequence from clone RP11-21H4 on chromosome 9 Contains a novel pseudogene and a novel zinc finger pseudogene, complete sequence Length = 173100 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 249 gcaaattctataaaaagagtgttt 272
>gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complete sequence Length = 188672 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 98350 gcaaaatctataaaaagagtgttt 98373
>gb|AC125634.1| Homo sapiens 3 BAC RP11-512E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162478 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 153521 gcaaattctataaaaagagtgttt 153498
>gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, complete sequence Length = 179026 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tctataaaaagagtgttttc 63 |||||||||||||||||||| Sbjct: 66211 tctataaaaagagtgttttc 66230
>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence Length = 136333 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 ttcagtatttaaaactgatt 543 |||||||||||||||||||| Sbjct: 104220 ttcagtatttaaaactgatt 104201
>gb|DQ422808.1| Homo sapiens tubulin, alpha 2 (TUBA2) gene, complete cds Length = 12021 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ttttcctcaaaaagaagaca 78 |||||||||||||||||||| Sbjct: 9575 ttttcctcaaaaagaagaca 9556
>gb|AC068798.26| Homo sapiens 12 BAC RP11-127J23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112070 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 gacttcagtatagaagttca 578 |||||||||||||||||||| Sbjct: 74113 gacttcagtatagaagttca 74094
>gb|AC078856.13| Homo sapiens 3 BAC RP11-73F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115534 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gacaaaaaggatgaaaacag 305 |||||||||||||||||||| Sbjct: 65605 gacaaaaaggatgaaaacag 65586
>gb|AC026005.7| Homo sapiens chromosome 8, clone RP11-470I23, complete sequence Length = 173839 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 |||||||||| ||||||||||||| Sbjct: 47013 gcaaagtctacaaaaagagtgttt 46990
>dbj|AK149715.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530012J01 product:unclassifiable, full insert sequence Length = 5247 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 gtgttttcctcaaaaagaagacag 79 ||||||||| |||||||||||||| Sbjct: 1137 gtgttttccacaaaaagaagacag 1160
>emb|CR383659.1| Human chromosome 14 DNA sequence BAC R-587D12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171206 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 5884 gcaaattctataaaaagagtgttt 5907
>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence Length = 221027 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 74754 gcaaattctataaaaagagtgttt 74731
>gb|AC139365.3| Homo sapiens chromosome 8, clone RP11-643N23, complete sequence Length = 185549 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tctataaaaagagtgttttc 63 |||||||||||||||||||| Sbjct: 94197 tctataaaaagagtgttttc 94178
>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete sequence Length = 198653 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tctataaaaagagtgttttc 63 |||||||||||||||||||| Sbjct: 22494 tctataaaaagagtgttttc 22475
>gb|AC008164.3| Homo sapiens BAC clone RP11-65N17 from 2, complete sequence Length = 151829 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 369 acaaggacccagctacctcagctctctgaaat 400 ||||| || |||||||| |||||||||||||| Sbjct: 98327 acaagaactcagctaccacagctctctgaaat 98358
>gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, complete sequence Length = 158329 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 agtctataaaaagagtgttt 61 |||||||||||||||||||| Sbjct: 76653 agtctataaaaagagtgttt 76634
>gb|AC116764.10| Mus musculus chromosome 15, clone RP23-388P12, complete sequence Length = 217156 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 attccatacaaggacccagctacc 385 |||||||||||||||||| ||||| Sbjct: 192833 attccatacaaggacccacctacc 192810
>gb|AC006143.1|AC006143 Homo sapiens PAC clone RP1-74M20 from X, complete sequence Length = 191544 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tcaaaaagaagacaggcaatgaag 88 |||||||||||||||| ||||||| Sbjct: 49605 tcaaaaagaagacaggaaatgaag 49582
>emb|AL121775.3|CNS01DSG Human chromosome 14 DNA sequence BAC R-552K16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172576 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 521 accttcagtatttaaaactgattg 544 ||||||||||||| |||||||||| Sbjct: 20449 accttcagtattttaaactgattg 20472
>gb|M38466.1|HUMASATA Homo sapiens clone pYAM 4-22 alpha-satellite sequence Length = 515 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 342 gcaaattctataaaaagagtgttt 319
>dbj|AG266818.1| Oryza glumipatula DNA, gypsy-type retrotransposon sequence, clone: RIRE144 Length = 431 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 tacagctggtgttcttgaagcttt 506 ||||||||||||||| |||||||| Sbjct: 400 tacagctggtgttctcgaagcttt 377
>dbj|AG266817.1| Oryza glumipatula DNA, gypsy-type retrotransposon sequence, clone: RIRE143 Length = 431 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 tacagctggtgttcttgaagcttt 506 ||||||||||||||| |||||||| Sbjct: 400 tacagctggtgttctcgaagcttt 377
>gb|M65182.1|HUM18ASB Homo sapiens clone pYAM 4-22 alpha-satellite, partial sequence Length = 515 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 342 gcaaattctataaaaagagtgttt 319
>dbj|AP004710.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1429D6, complete sequence Length = 179115 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 taggatttcaggcaaagtct 46 |||||||||||||||||||| Sbjct: 102507 taggatttcaggcaaagtct 102488
>emb|BX005375.9| Zebrafish DNA sequence from clone CH211-207N2 in linkage group 17, complete sequence Length = 214178 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 agacaggcaatgaagtacag 93 |||||||||||||||||||| Sbjct: 112600 agacaggcaatgaagtacag 112581
>emb|BX000449.4| Human DNA sequence from clone RP11-287N12 on chromosome 9, complete sequence Length = 164006 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 gcaaagtctataaaaagagtgttt 61 ||||| |||||||||||||||||| Sbjct: 32055 gcaaattctataaaaagagtgttt 32078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,370,977 Number of Sequences: 3902068 Number of extensions: 6370977 Number of successful extensions: 132039 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130784 Number of HSP's gapped (non-prelim): 1252 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)