ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags29h13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clon... 224 1e-55
2dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 1e-55
3gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 125 7e-26
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
5gb|AY105732.1| Zea mays PCO085152 mRNA sequence 109 4e-21
6dbj|AK101922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
7dbj|AK064817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
8dbj|AK060901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
9dbj|AK061329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
10gb|AY105163.1| Zea mays PCO060632 mRNA sequence 82 1e-12
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
12dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
13dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
14gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Can... 46 0.055
15emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 44 0.22
16gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome... 44 0.22
17emb|BX883045.1| Rattus norvegicus chromosome 20, major histocomp... 42 0.86
18gb|DQ138648.1| Drosophila yakuba strain T33 CG7960 gene, partial... 42 0.86
19gb|DQ138647.1| Drosophila yakuba strain Tai18 CG7960 gene, parti... 42 0.86
20gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome... 40 3.4
21gb|AC163684.5| Mus musculus BAC clone RP23-8N10 from chromosome ... 40 3.4
22gb|CP000001.1| Bacillus cereus E33L, complete genome 40 3.4
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
24dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4 
>dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F07, full
           insert sequence
          Length = 1324

 Score =  224 bits (113), Expect = 1e-55
 Identities = 193/219 (88%), Gaps = 1/219 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccccttcgngnccccacgccgcgccttgccctatctgttccgaaaaggtttctaaaga 60
           |||||||||| | ||||| || |||||||||||||| ||||| || ||| || | |||||
Sbjct: 399 caccccttcgag-ccccatgcggcgccttgccctatatgttctgataagattgcaaaaga 457

                                                                       
Query: 61  tatgcttaatcatatcaccatgcaacatgggtacttgttcaagaatcgccgcaggttgcg 120
           ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||
Sbjct: 458 tatgcttaatcatatcactgtgcaacatgggtacttgttcaagaatcgtcgcaggttgcg 517

                                                                       
Query: 121 cagatttgctgttccaggcagccagtcgctctctctgctgagccgggatctacgtgaagc 180
           |||||| | | |||||||||| ||  | || ||| ||||||| || ||||||||||||||
Sbjct: 518 cagattcgttattccaggcagtcaagccctatctttgctgagtcgagatctacgtgaagc 577

                                                  
Query: 181 ccatttgcaggtgcttctgggaggtggngggcataggtc 219
           ||||||||||||||||||||||||||| || ||||||||
Sbjct: 578 ccatttgcaggtgcttctgggaggtgggggacataggtc 616
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>dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B10, full
           insert sequence
          Length = 1387

 Score =  224 bits (113), Expect = 1e-55
 Identities = 193/219 (88%), Gaps = 1/219 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccccttcgngnccccacgccgcgccttgccctatctgttccgaaaaggtttctaaaga 60
           |||||||||| | ||||| || |||||||||||||| ||||| || ||| || | |||||
Sbjct: 419 caccccttcgag-ccccatgcggcgccttgccctatatgttctgataagattgcaaaaga 477

                                                                       
Query: 61  tatgcttaatcatatcaccatgcaacatgggtacttgttcaagaatcgccgcaggttgcg 120
           ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||
Sbjct: 478 tatgcttaatcatatcactgtgcaacatgggtacttgttcaagaatcgtcgcaggttgcg 537

                                                                       
Query: 121 cagatttgctgttccaggcagccagtcgctctctctgctgagccgggatctacgtgaagc 180
           |||||| | | |||||||||| ||  | || ||| ||||||| || ||||||||||||||
Sbjct: 538 cagattcgttattccaggcagtcaagccctatctttgctgagtcgagatctacgtgaagc 597

                                                  
Query: 181 ccatttgcaggtgcttctgggaggtggngggcataggtc 219
           ||||||||||||||||||||||||||| || ||||||||
Sbjct: 598 ccatttgcaggtgcttctgggaggtgggggacataggtc 636
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>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
              complete sequence
          Length = 139139

 Score =  125 bits (63), Expect = 7e-26
 Identities = 104/118 (88%)
 Strand = Plus / Minus

                                                                          
Query: 102    agaatcgccgcaggttgcgcagatttgctgttccaggcagccagtcgctctctctgctga 161
              ||||||| ||||||||||||||||| | | |||||||||| ||  | || ||| ||||||
Sbjct: 113215 agaatcgtcgcaggttgcgcagattcgttattccaggcagtcaagccctatctttgctga 113156

                                                                        
Query: 162    gccgggatctacgtgaagcccatttgcaggtgcttctgggaggtggngggcataggtc 219
              | || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 113155 gtcgagatctacgtgaagcccatttgcaggtgcttctgggaggtgggggacataggtc 113098



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                          
Query: 25     gccttgccctatctgttccgaaaaggtttctaaagatatgcttaatcatatcaccatgca 84
              |||||||||||| ||||| || ||| || | |||||||||||||||||||||||  ||||
Sbjct: 113447 gccttgccctatatgttctgataagattgcaaaagatatgcttaatcatatcactgtgca 113388

                                 
Query: 85     acatgggtacttgttcaag 103
              |||||||||||||||||||
Sbjct: 113387 acatgggtacttgttcaag 113369
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  125 bits (63), Expect = 7e-26
 Identities = 104/118 (88%)
 Strand = Plus / Minus

                                                                            
Query: 102      agaatcgccgcaggttgcgcagatttgctgttccaggcagccagtcgctctctctgctga 161
                ||||||| ||||||||||||||||| | | |||||||||| ||  | || ||| ||||||
Sbjct: 27748657 agaatcgtcgcaggttgcgcagattcgttattccaggcagtcaagccctatctttgctga 27748598

                                                                          
Query: 162      gccgggatctacgtgaagcccatttgcaggtgcttctgggaggtggngggcataggtc 219
                | || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 27748597 gtcgagatctacgtgaagcccatttgcaggtgcttctgggaggtgggggacataggtc 27748540



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                            
Query: 25       gccttgccctatctgttccgaaaaggtttctaaagatatgcttaatcatatcaccatgca 84
                |||||||||||| ||||| || ||| || | |||||||||||||||||||||||  ||||
Sbjct: 27748889 gccttgccctatatgttctgataagattgcaaaagatatgcttaatcatatcactgtgca 27748830

                                   
Query: 85       acatgggtacttgttcaag 103
                |||||||||||||||||||
Sbjct: 27748829 acatgggtacttgttcaag 27748811
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>gb|AY105732.1| Zea mays PCO085152 mRNA sequence
          Length = 1364

 Score =  109 bits (55), Expect = 4e-21
 Identities = 157/191 (82%)
 Strand = Plus / Plus

                                                                       
Query: 14  ccccacgccgcgccttgccctatctgttccgaaaaggtttctaaagatatgcttaatcat 73
           ||||| |||||| | |||||| |||| || || | |||| | || |||||| |||| |||
Sbjct: 638 ccccaagccgcggcctgccctgtctgctcagagatggttacgaaggatatggttaaccat 697

                                                                       
Query: 74  atcaccatgcaacatgggtacttgttcaagaatcgccgcaggttgcgcagatttgctgtt 133
           || || | ||||||||| || || ||||||||||||||| || ||||||||||     ||
Sbjct: 698 attactacgcaacatggatatttattcaagaatcgccgccggctgcgcagattcatcatt 757

                                                                       
Query: 134 ccaggcagccagtcgctctctctgctgagccgggatctacgtgaagcccatttgcaggtg 193
           |||||||||||| | |||||| |||||||||| |||||||| |||||||| |||||||||
Sbjct: 758 ccaggcagccaggccctctctttgctgagccgagatctacgggaagcccacttgcaggtg 817

                      
Query: 194 cttctgggagg 204
           || || |||||
Sbjct: 818 ctcctcggagg 828
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>dbj|AK101922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L05, full
           insert sequence
          Length = 1158

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 58  agatatgcttaatcatatcaccatgcaacatgggtacttgttcaagaatcgccgcaggtt 117
           ||||||| | ||||||||||||||||||||||| ||||||||||||| | | |||||| |
Sbjct: 359 agatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggat 418

                    
Query: 118 gcgcagatt 126
           |||||||||
Sbjct: 419 gcgcagatt 427
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>dbj|AK064817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E14, full
            insert sequence
          Length = 2618

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                        
Query: 58   agatatgcttaatcatatcaccatgcaacatgggtacttgttcaagaatcgccgcaggtt 117
            ||||||| | ||||||||||||||||||||||| ||||||||||||| | | |||||| |
Sbjct: 1815 agatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggat 1874

                     
Query: 118  gcgcagatt 126
            |||||||||
Sbjct: 1875 gcgcagatt 1883
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>dbj|AK060901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D08, full
           insert sequence
          Length = 1364

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 58  agatatgcttaatcatatcaccatgcaacatgggtacttgttcaagaatcgccgcaggtt 117
           ||||||| | ||||||||||||||||||||||| ||||||||||||| | | |||||| |
Sbjct: 628 agatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggat 687

                    
Query: 118 gcgcagatt 126
           |||||||||
Sbjct: 688 gcgcagatt 696
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>dbj|AK061329.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A03, full
           insert sequence
          Length = 1374

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 58  agatatgcttaatcatatcaccatgcaacatgggtacttgttcaagaatcgccgcaggtt 117
           ||||||| | ||||||||||||||||||||||| ||||||||||||| | | |||||| |
Sbjct: 686 agatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggat 745

                    
Query: 118 gcgcagatt 126
           |||||||||
Sbjct: 746 gcgcagatt 754
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>gb|AY105163.1| Zea mays PCO060632 mRNA sequence
          Length = 1505

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 14  ccccacgccgcgccttgccctatctgttccgaaaaggtttctaaagatatgcttaatcat 73
           |||||||||||||| ||||| || || ||| ||| | || | |  ||||||||||| |||
Sbjct: 652 ccccacgccgcgccctgccccatttgctcccaaaggattacaagggatatgcttaaccat 711

                                            
Query: 74  atcaccatgcaacatgggtacttgttcaagaat 106
           ||||||||||||||||| |||||||||||||||
Sbjct: 712 atcaccatgcaacatggttacttgttcaagaat 744
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                              
Query: 58       agatatgcttaatcatatcaccatgcaacatgggtacttgttcaag 103
                ||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct: 27596674 agatatgttaaatcatatcaccatgcaacatggttacttgttcaag 27596719
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>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0485G01
          Length = 167203

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                          
Query: 58   agatatgcttaatcatatcaccatgcaacatgggtacttgttcaag 103
            ||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct: 5240 agatatgttaaatcatatcaccatgcaacatggttacttgttcaag 5285
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>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0007F06
          Length = 150817

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                           
Query: 58    agatatgcttaatcatatcaccatgcaacatgggtacttgttcaag 103
             ||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct: 63968 agatatgttaaatcatatcaccatgcaacatggttacttgttcaag 64013
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>gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187628

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 45     aaaaggtttctaaagatatgctt 67
              |||||||||||||||||||||||
Sbjct: 147411 aaaaggtttctaaagatatgctt 147433
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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
             hansenii
          Length = 1592360

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 45    aaaaggtttctaaagatatgcttaat 70
             |||||||||||| |||||||||||||
Sbjct: 11514 aaaaggtttctagagatatgcttaat 11539
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>gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome 13, complete sequence
          Length = 183319

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 139   cagccagtcgctctctctgctgagcc 164
             ||||||||| ||||||||||||||||
Sbjct: 86663 cagccagtccctctctctgctgagcc 86638
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>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    cagatttgctgttccaggcag 141
              |||||||||||||||||||||
Sbjct: 154873 cagatttgctgttccaggcag 154853
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>gb|DQ138648.1| Drosophila yakuba strain T33 CG7960 gene, partial cds
          Length = 492

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 146 tcgctctctctgctgagccgg 166
           |||||||||||||||||||||
Sbjct: 56  tcgctctctctgctgagccgg 36
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>gb|DQ138647.1| Drosophila yakuba strain Tai18 CG7960 gene, partial cds
          Length = 492

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 146 tcgctctctctgctgagccgg 166
           |||||||||||||||||||||
Sbjct: 56  tcgctctctctgctgagccgg 36
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>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    tttctaaagatatgcttaatcata 74
             ||||||||||| ||||||||||||
Sbjct: 82950 tttctaaagatctgcttaatcata 82973
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>gb|AC163684.5| Mus musculus BAC clone RP23-8N10 from chromosome 13, complete sequence
          Length = 234717

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    tttctaaagatatgcttaatcata 74
             ||||||||||| ||||||||||||
Sbjct: 21478 tttctaaagatctgcttaatcata 21501
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     aacaataatgcggcaaatat 243
               ||||||||||||||||||||
Sbjct: 3508329 aacaataatgcggcaaatat 3508348
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 14       ccccacgccgcgccttgccctatc 37
                |||||||||||||| |||||||||
Sbjct: 10359276 ccccacgccgcgccgtgccctatc 10359299
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>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1104_G11
          Length = 140093

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    ccccacgccgcgccttgccctatc 37
             |||||||||||||| |||||||||
Sbjct: 66981 ccccacgccgcgccgtgccctatc 67004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,770,964
Number of Sequences: 3902068
Number of extensions: 1770964
Number of successful extensions: 26613
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26552
Number of HSP's gapped (non-prelim): 59
length of query: 261
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 239
effective length of database: 17,147,199,772
effective search space: 4098180745508
effective search space used: 4098180745508
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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