ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29h07 |
|---|---|
| Clone Library Name | barley_pub |
>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1473 Score = 108 bits (270), Expect = 1e-23 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 9/150 (6%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTE---AEE------DN 154 LAV+S +IIVN RK+AD+ +L+QK +TPFP+K + G+ + AEE D Sbjct: 1046 LAVLSGEIIVNKRKKADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDP 1105 Query: 155 DQSPAEAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDA 334 + S + S+Y+YLLAM+I +LT+EKV EL+A +DK+ + ++ T P++LWL DL++ Sbjct: 1106 ESSSSYIPGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWLSDLES 1165 Query: 335 LEKELDVCDAKLEAEQQNRSSKRAKNSEKA 424 L+KEL+ D K QQ + + K K+ Sbjct: 1166 LDKELEKLDLKDAQVQQAIEAAQKKIRAKS 1195
>TOP2_PEA (O24308) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| (PsTopII) Length = 1462 Score = 108 bits (270), Expect = 1e-23 Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 11/149 (7%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTE--AEEDNDQSPAEA 175 L V++ +IIV+NRK+A+L +ELK+K +TP P+K ++ P G+ + +EE D P A Sbjct: 1012 LGVVNGEIIVSNRKKAELLIELKEKGFTPMPRKGKSTKPQVAGANDDDSEEQEDAEPETA 1071 Query: 176 AAS---------DYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDL 328 + S DY+ LL++ IGTLTLE V +L+ ++ + + + E+L T +LWL+DL Sbjct: 1072 SQSVSVEGATWGDYDDLLSLPIGTLTLESVQKLLDEKTEKEKEYEILSGTPTTSLWLKDL 1131 Query: 329 DALEKELDVCDAKLEAEQQNRSSKRAKNS 415 D EK+LD D K + + R+S+ +K + Sbjct: 1132 DEFEKKLDELDLKYAEDDRKRASQGSKKA 1160
>TOP2_PLAFK (P41001) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1398 Score = 85.9 bits (211), Expect = 9e-17 Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 5/138 (3%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFP-----KKKPTSGPVAVGSTEAEEDNDQSP 166 LA+++ ++IVN +K+ L EL +K Y P+ KK+ + + + EDN++ Sbjct: 1078 LAIVNNELIVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEII 1137 Query: 167 AEAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKE 346 A DY+YLL+M I +LTLEKV +L+ Q + + +LE+LRN +T+WL+D++ +E+ Sbjct: 1138 AGITVKDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITVETMWLKDIEKVEEA 1197 Query: 347 LDVCDAKLEAEQQNRSSK 400 ++ +E + S+K Sbjct: 1198 IEF-QRNVELSNREESNK 1214
>TOP2_SCHPO (P08096) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1485 Score = 79.7 bits (195), Expect = 6e-15 Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 6/146 (4%) Frame = +2 Query: 8 VISEDIIVNNRKRADLFLELKQKNYTPFPK-KKPTSGPVAVGSTEAEEDNDQSPAEAAAS 184 +I +++V+ +K+ DL +ELK+K + P K KK + V + AEE+ ++ S Sbjct: 1087 IIEGELVVSKKKKKDLIVELKEKKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDS 1146 Query: 185 D-YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALE----KEL 349 D Y YLL+M + +LT E+ EL+ ++D++ A+L+ L P+ LWL DLDA E K + Sbjct: 1147 DAYNYLLSMPLWSLTYERYVELLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVM 1206 Query: 350 DVCDAKLEAEQQNRSSKRAKNSEKAK 427 D D + E ++ +SS+ N K K Sbjct: 1207 D--DIQREMLEEEQSSRDFVNRTKKK 1230
>TOP2_DROME (P15348) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1447 Score = 77.8 bits (190), Expect = 2e-14 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 24/153 (15%) Frame = +2 Query: 23 IIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAAS------ 184 ++V N++R + EL ++ Y P P K+ + + E ++ D+ EAA S Sbjct: 1045 LVVENKQRKAMCDELLKRGYRPDPVKE-WQRRIKMEDAEQADEEDEEEEEAAPSVSSKAK 1103 Query: 185 ------------------DYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQT 310 ++YLL MS+ LT EK NEL+ Q+D ++LE LR P+ Sbjct: 1104 KEKEVDPEKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEM 1163 Query: 311 LWLRDLDALEKELDVCDAKLEAEQQNRSSKRAK 409 LWL DLDALE +L+ + K AE+Q + K AK Sbjct: 1164 LWLDDLDALESKLNEVEEKERAEEQGINLKTAK 1196
>TOP2_PENCH (Q9Y8G8) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1587 Score = 70.5 bits (171), Expect = 4e-12 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Frame = +2 Query: 8 VISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEA----EEDNDQSPAEA 175 +I ++++ +K+A L ELK+K++ PFPK K V G TE EED++ E Sbjct: 1083 IIDGKLVISKKKKAVLVAELKEKDFKPFPKVKEA---VKAGETEPVVEEEEDSESGDTEV 1139 Query: 176 AASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELDV 355 ++ Y+YLL M I +LT E+V +L Q + +++ L + +W RDL+ E Sbjct: 1140 LSNSYDYLLGMPIWSLTQERVEKLRRQIGDKELEIDTLIKLSKEDIWKRDLEDFINEW-- 1197 Query: 356 CDAKLEAEQQNRSSKRAKN 412 + + +++ R ++ N Sbjct: 1198 ---RFQNDEEARRQRKVAN 1213
>TOP2A_RAT (P41516) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 70.5 bits (171), Expect = 4e-12 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQS------ 163 L I I++ N+ + +L L Q+ Y P K V E E+N++S Sbjct: 1054 LEKIDGKIVIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESTS 1113 Query: 164 PAEAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEK 343 PA + + YLL M + LT EK +EL Q+D+ + +L L+ P LW DL A + Sbjct: 1114 PAAESGPTFNYLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVE 1173 Query: 344 ELDVCDAKLEAEQQ 385 EL+V +AK + ++Q Sbjct: 1174 ELEVVEAKEKQDEQ 1187
>TOP2A_CRIGR (P41515) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 67.4 bits (163), Expect = 3e-11 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 3/131 (2%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAA 181 L I II+ N+ + +L L Q+ Y P K V E E++D +++ A Sbjct: 1055 LEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVA 1114 Query: 182 SD---YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELD 352 + YLL M + LT EK +EL Q+++ + +L L+N P LW DL +EL+ Sbjct: 1115 ESGPTFNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVFIEELE 1174 Query: 353 VCDAKLEAEQQ 385 V +AK + ++Q Sbjct: 1175 VVEAKEKQDEQ 1185
>TOP2A_CHICK (O42130) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1553 Score = 67.0 bits (162), Expect = 4e-11 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAA 181 L I I++ N+ + +L L Q+ Y P K + EE+ D+S E+AA Sbjct: 1057 LEKIDGKIVIENKPKKELIQVLIQRGYESDPVKAWKEL-----QNKEEEEGDESGEESAA 1111 Query: 182 S---DYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELD 352 + D+ YLL M + LT EK +EL Q+D +LE L++ P LW DL A +ELD Sbjct: 1112 ATGPDFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLKHKSPSDLWKEDLAAFVEELD 1171 Query: 353 VCDAK 367 +AK Sbjct: 1172 AVEAK 1176
>TOP2B_HUMAN (Q02880) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase| II, beta isozyme) Length = 1626 Score = 66.6 bits (161), Expect = 5e-11 Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKK-PTSGPVAVGSTEAEEDNDQSPAEA- 175 L I I + NR + DL L Q+ Y P K + A E + +D S +++ Sbjct: 1077 LEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSG 1136 Query: 176 --AASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKEL 349 + D+ Y+L MS+ +LT EKV ELI Q+D ++ L+ P LW DL A +EL Sbjct: 1137 TPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEEL 1196 Query: 350 DVCDAKLEAEQQNRSSKRAKNSEKA 424 D + E Q R A S KA Sbjct: 1197 D------KVESQEREDVLAGMSGKA 1215
>TOP2B_MOUSE (Q64511) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase| II, beta isozyme) Length = 1612 Score = 65.5 bits (158), Expect = 1e-10 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKK-PTSGPVAVGSTEAEEDNDQSPAEA- 175 L I I + NR + DL L Q+ Y P K + A +++ +D S +++ Sbjct: 1065 LEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSG 1124 Query: 176 --AASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKEL 349 + D+ Y+L MS+ +LT EKV ELI Q+D ++ L+ P LW DL A +EL Sbjct: 1125 TPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPSDLWKEDLAAFVEEL 1184 Query: 350 DVCDAKLEAEQQ 385 D K+EA+++ Sbjct: 1185 D----KVEAQER 1192
>TOP2A_MOUSE (Q01320) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1528 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAA 181 L I I++ N+ + +L L Q+ Y P K + A EE+N++S E + Sbjct: 1055 LEKIDGKIVIENKPKKELIKVLIQRGYDSDPVK---AWKEAQQKVPDEEENEESDTETST 1111 Query: 182 SD--------YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDAL 337 SD + YLL M + LT EK +EL Q+++ + +L L+ P LW DL Sbjct: 1112 SDSAAEAGPTFNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVF 1171 Query: 338 EKELDVCDAKLEAEQQ 385 +EL+V +AK + ++Q Sbjct: 1172 IEELEVVEAKEKQDEQ 1187
>TOP2_BOMMO (O16140) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| (TOPOII) Length = 1547 Score = 64.3 bits (155), Expect = 3e-10 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 22/151 (14%) Frame = +2 Query: 23 IIVNNRKRADLFLELKQKNYTPFP----KKKPTS--GPVAVGSTEAEEDNDQSPAE---- 172 +++ N+KR + EL ++ Y P P KK+ + G A+ +A+E ++ P Sbjct: 1069 LVIENKKRKAMVEELIKRGYAPDPIADWKKRASKIQGLTALEDDDAQESEEEEPEPDPKG 1128 Query: 173 ------------AAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLW 316 + YLL MS+ LT EK +EL+ Q+D+ +L L+N LW Sbjct: 1129 KPVDPDKAFQQLKEVKKFNYLLGMSMWMLTKEKKDELLKQRDQKLTELTTLKNKTAPMLW 1188 Query: 317 LRDLDALEKELDVCDAKLEAEQQNRSSKRAK 409 DLDA +LD + K E+ N + K +K Sbjct: 1189 REDLDAFLIKLDEVEDKERREELNVNKKTSK 1219
>TOP2B_CRILO (Q64399) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase| II, beta isozyme) Length = 1612 Score = 63.9 bits (154), Expect = 3e-10 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKK-PTSGPVAVGSTEAEEDNDQSPAEA- 175 L I I + NR + DL L Q+ Y P + + A + + +D S +++ Sbjct: 1065 LEKIQGKITIENRSKKDLIQMLVQRGYESDPVRAWKEAQEKAAEEEDTQNQHDDSSSDSG 1124 Query: 176 --AASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKEL 349 + D+ Y+L MS+ +LT EKV ELI Q+D ++ L+ P LW DL A +EL Sbjct: 1125 TPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPSDLWKEDLAAFVEEL 1184 Query: 350 DVCDAKLEAEQQ 385 D K+EA+++ Sbjct: 1185 D----KVEAQER 1192
>TOP2_CANAL (P87078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1461 Score = 63.2 bits (152), Expect = 6e-10 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 28/168 (16%) Frame = +2 Query: 8 VISEDIIVNNRKRADLFLELKQKNYTPFPKK-KPTS---------------------GPV 121 +I + + V N+K+ L L++ N+T F K KP G Sbjct: 1092 IIEKQLSVANKKKKQLVALLEEHNFTKFSKDGKPIKSSEELLTGDDADEEEETQEQEGDE 1151 Query: 122 AVGSTEAEEDNDQSPAEAAA------SDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLE 283 VG+T + P +AA S Y+YLL M+I +LT E+ ++ Q+D+ +A+L Sbjct: 1152 DVGNTSVANIQEGEPEQAAHVPETIYSSYDYLLGMAIWSLTYERFMRIMQQRDQKEAELN 1211 Query: 284 MLRNTEPQTLWLRDLDALEKELDVCDAKLEAEQQNRSSKRAKNSEKAK 427 L + + LW +DLD E D + E E+++ +S K S K + Sbjct: 1212 ALLSKSAKDLWNQDLDEFLAEFDKFLLRDEQERESLASNGKKKSTKRR 1259
>TOP2B_CHICK (O42131) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase| II, beta isozyme) Length = 1627 Score = 62.8 bits (151), Expect = 8e-10 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKK--KPTSGPVAVGSTEAEEDNDQSPAEA 175 L I I + NR + DL L Q+ Y P K K A ++D S A Sbjct: 1082 LEKIQGKITIENRSKRDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDPQNANDDASSASG 1141 Query: 176 AAS--DYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKEL 349 + S D+ Y+L MS+ +LT EKV ELI +D + +L L+ LW DL A +EL Sbjct: 1142 STSGPDFNYILNMSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAFVEEL 1201 Query: 350 DVCDAKLEAEQQ 385 + K+EA+++ Sbjct: 1202 E----KVEAQER 1209
>TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1533 Score = 61.2 bits (147), Expect = 2e-09 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 8/136 (5%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAA 181 L I II+ N+ + +L L Q+ Y P K V E E++D EA Sbjct: 1056 LEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEK-EADK 1114 Query: 182 SD--------YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDAL 337 SD + YLL M + LT EK +EL +++ + +LE L+ P LW DL A Sbjct: 1115 SDSVADSGPTFNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAF 1174 Query: 338 EKELDVCDAKLEAEQQ 385 +EL+ +AK + ++Q Sbjct: 1175 IEELEAVEAKEKQDEQ 1190
>TOP2_CAEEL (Q23670) Probable DNA topoisomerase 2 (EC 5.99.1.3) (DNA| topoisomerase II) Length = 1520 Score = 59.7 bits (143), Expect = 7e-09 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 19/155 (12%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKK----------PTSGPVAVGSTE---- 139 LA I+ +I++ N+K+A + L + + P KK SG + + + Sbjct: 1092 LAKINNEIVLENKKKAAIVDVLIKMKFDADPVKKWKEEQKLKELRESGEIELDEDDLAAV 1151 Query: 140 -AEEDNDQSPA----EAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEP 304 EED S A E SDY+YL+ M++ L+ E+ N+LI + ++ A++ ++ Sbjct: 1152 AVEEDEAISSAAKAVETKLSDYDYLVGMALIKLSEEEKNKLIKESEEKMAEVRVIEKKTW 1211 Query: 305 QTLWLRDLDALEKELDVCDAKLEAEQQNRSSKRAK 409 Q LW DLD ELD +A+ +A+Q AK Sbjct: 1212 QDLWHEDLDNFVSELDKQEAREKADQDASIKNAAK 1246
>TOP2A_HUMAN (P11388) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1531 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Frame = +2 Query: 2 LAVISEDIIVNNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAA 181 L I II+ N+ + +L L Q+ Y P K V E E++D E Sbjct: 1056 LEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEK-ETEK 1114 Query: 182 SD--------YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDAL 337 SD + YLL M + LT EK +EL +++ + +L+ L+ P LW DL Sbjct: 1115 SDSVTDSGPTFNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATF 1174 Query: 338 EKELDVCDAKLEAEQQ 385 +EL+ +AK + ++Q Sbjct: 1175 IEELEAVEAKEKQDEQ 1190
>TOP2_PICGU (Q01879) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| (Fragment) Length = 389 Score = 57.4 bits (137), Expect = 3e-08 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 28/168 (16%) Frame = +2 Query: 8 VISEDIIVNNRKRADLFLELKQKNYTPFPKK-KPTSGPVAVGSTE--------------- 139 +I + + + N+KR ++ +LK+ +T F K KP V + E Sbjct: 46 IIEKKLTIANKKRLEMVDDLKKLKFTRFNKNGKPVHDEPLVEAEELAEEEEEAAGDISQL 105 Query: 140 -----AEEDNDQSPAEAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEP 304 A ED Q E S Y+YLL M+I +LT E+ +L+ Q+D+ + +L L Sbjct: 106 NLGLVAPEDESQYKPETTYSQYDYLLGMAIWSLTRERYEKLLRQRDEKQEELNELLKKSA 165 Query: 305 QTLWLRDL-DALEKELDVCDAKLEAEQ------QNRSSKRAKNSEKAK 427 + LW DL D L + A +EA + + KRA+ S K++ Sbjct: 166 KDLWNSDLDDFLVGWEEFLRADIEARNSFGPTAKTSTRKRARKSTKSE 213
>TOP2_CANGA (O93794) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1406 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 22/130 (16%) Frame = +2 Query: 8 VISEDIIVNNRKRADLFLELKQKNYTPFPKK-KPTSGPV-----AVGSTEAEEDNDQSPA 169 +I + +IV N+ + L EL++ + K+ KP G + A+ S + +ED ++S Sbjct: 1031 IIDKSLIVTNKPKKQLISELEELGFPRINKEGKPHFGKIDEEVEAIISEDEDEDLEESEE 1090 Query: 170 EAAASD----------------YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTE 301 D YEYLL + I +LT E+ +L+ Q+ + + +LE L Sbjct: 1091 ATRKKDKDDESTVNGPEELFGTYEYLLGLKIWSLTKERYEKLLKQKQEKETELENLLKLS 1150 Query: 302 PQTLWLRDLD 331 + LW DLD Sbjct: 1151 AKDLWNNDLD 1160
>TOP2_MIMIV (Q5UQE6) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1263 Score = 39.3 bits (90), Expect = 0.009 Identities = 19/78 (24%), Positives = 41/78 (52%) Frame = +2 Query: 188 YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELDVCDAK 367 Y Y+ ++ + LTLE+V +L Q K +L +L P+ +W +LD + D+ + + Sbjct: 1177 YGYITSIGLFNLTLEEVEKLKKQLADKKQELAILEAKSPEEIWEEELDEFVEAYDIWEKE 1236 Query: 368 LEAEQQNRSSKRAKNSEK 421 ++ + +K+ ++ K Sbjct: 1237 VDENYNDLLNKKKGSTGK 1254
>TOP2_LEICH (O61078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1236 Score = 36.2 bits (82), Expect = 0.077 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = +2 Query: 188 YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELDVCDAK 367 ++Y+L I T +L A K +A +E L+ T P +WL +LD +K + Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERV 1114 Query: 368 L--EAEQQNRSS 397 L +++ RSS Sbjct: 1115 LINSIQKEQRSS 1126
>TOP2_CRIFA (P27570) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1239 Score = 35.0 bits (79), Expect = 0.17 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 188 YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEK 343 Y+Y+L I T +L A K + + +L+ T P +WL DLD +K Sbjct: 1055 YDYILKKPITFYTKTSTEKLQADIKKTQDSIAVLKQTTPVKMWLTDLDKFDK 1106
>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome| segregation protein cut3) (Cell untimely torn protein 3) Length = 1324 Score = 34.7 bits (78), Expect = 0.23 Identities = 32/122 (26%), Positives = 55/122 (45%) Frame = +2 Query: 35 NRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAASDYEYLLAMSI 214 N + ADL L L+Q+ + +K G G + A E+ ++ A A Sbjct: 481 NSEIADLSLRLQQEELSLDDIRKSLQGKTE-GISNAIEEKQKAMAPA------------- 526 Query: 215 GTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELDVCDAKLEAEQQNRS 394 LEK+N+L +++ L+ +L+ML N E + D+++ + LD E + S Sbjct: 527 ----LEKINQLTSEKQILQVELDMLLNKENDL--INDVESSQSSLDKLRNDAEENRNILS 580 Query: 395 SK 400 SK Sbjct: 581 SK 582
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 34.3 bits (77), Expect = 0.29 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 14/142 (9%) Frame = +2 Query: 41 KRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSP--------------AEAA 178 KRA E +++ P PKK+P A S E ++D ++SP +E+ Sbjct: 34 KRAQKLKEKREREGKPPPKKRPAKKRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESD 93 Query: 179 ASDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELDVC 358 SD E S +++ + +++ + + E + E + + K+ Sbjct: 94 ESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSS 153 Query: 359 DAKLEAEQQNRSSKRAKNSEKA 424 ++ E+E++ + K KN EK+ Sbjct: 154 ESSEESEEERKVKKSKKNKEKS 175
>TOP2M_CAEEL (P34534) Putative DNA topoisomerase II, mitochondrial precursor (EC| 5.99.1.3) Length = 1053 Score = 33.9 bits (76), Expect = 0.38 Identities = 14/52 (26%), Positives = 31/52 (59%) Frame = +2 Query: 182 SDYEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDAL 337 ++Y YLL M + LT +++ L ++ + + +LE + + +++W +LD L Sbjct: 992 ANYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEAAESADWKSVWRSELDKL 1043
>SYV_STAHJ (Q4L703) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 876 Score = 31.2 bits (69), Expect = 2.5 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = +2 Query: 230 EKVNELIAQQDKLKADLEMLRNTEPQTLWL-RDLDALEKELDVCDAKLEAEQ-QNRSSKR 403 EK + K+ LE L + + + L ++LD L+KELD D KL E N++ ++ Sbjct: 789 EKAMTAVVIAGKVVLPLEGLIDMDKEIARLEKELDKLQKELDRVDKKLSNENFVNKAPEK 848 Query: 404 AKNSEKAK 427 N EK K Sbjct: 849 VINEEKEK 856
>RAI3_MOUSE (Q8BHL4) Retinoic acid-induced protein 3 (G-protein coupled| receptor family C group 5 member A) (Retinoic acid-induced gene 1 protein) (RAIG-1) Length = 356 Score = 31.2 bits (69), Expect = 2.5 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Frame = -3 Query: 196 ILIITCCSFSRTLIIIFLCFCRSYSNWPRRGFF----------LWERCIVLLL 68 +LI T FL FC S+S W R GF +W IVLLL Sbjct: 182 LLIYVLVLMVLTFFTSFLVFCGSFSGWKRHGFHICFTSFLSIAIWVAWIVLLL 234
>TRPG_EMENI (P06531) Anthranilate synthase component 2 (EC 4.1.3.27)| (Anthranilate synthase component II) [Includes: Glutamine amidotransferase; Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3 Length = 768 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Frame = +2 Query: 23 IIVNNRKRA---DLFLEL-KQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAASDY 190 I+V RKR D+ L++ K TP P PT P + + D S A + Sbjct: 558 ILVEGRKRTVPDDVALQISKVVKSTPRPTPYPTEVPQGDTDATSVDYFDHS----ATTLR 613 Query: 191 EYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEP 304 A+ +G + ++ ++AQQ KL D+ L +EP Sbjct: 614 HPTRALLVGVFLNQPLSYVLAQQQKLGLDVVQLHGSEP 651
>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 975 Score = 30.8 bits (68), Expect = 3.3 Identities = 30/111 (27%), Positives = 49/111 (44%) Frame = +2 Query: 95 KKKPTSGPVAVGSTEAEEDNDQSPAEAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKA 274 K + SG + S + ED PAE + S + E NE+ +++D+ + Sbjct: 510 KTRLRSGSALLQSQSSTEDPKDEPAELKPDSEDLSSQSSASKASQEDANEIKSKRDEEER 569 Query: 275 DLEMLRNTEPQTLWLRDLDALEKELDVCDAKLEAEQQNRSSKRAKNSEKAK 427 + E R E + R+ EKE + KL+ ++ R S AK+ EK K Sbjct: 570 ERER-REKERERERERE---KEKEREREKQKLKESEKERDS--AKDKEKGK 614
>NODAL_MOUSE (P43021) Nodal precursor| Length = 354 Score = 30.8 bits (68), Expect = 3.3 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Frame = +2 Query: 47 ADLFLELKQKNYTPFPKKKPTSGPVAVGST-EAEEDNDQSPAEAAASDYEYLLAMSIGTL 223 AD+ L+L P P PT GP+ + +A+ D ++ PA+ L + + T Sbjct: 92 ADVRLQL------PGPMDIPTEGPLTIDIFHQAKGDPERDPADC-------LERIWMETF 138 Query: 224 TLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKEL 349 T+ I Q + +L T+P + WL+D ALEK++ Sbjct: 139 TV------IPSQVTFASGSTVLEVTKPLSKWLKDPRALEKQV 174
>TOP2_TRYCR (P30190) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1232 Score = 30.8 bits (68), Expect = 3.3 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 18/122 (14%) Frame = +2 Query: 41 KRADLFLELKQKNY----TPFPKKKPTSGPVA---VGSTEAEEDNDQSPAEAAAS----- 184 +R DL+ + +Q+N ++K T V G + D S A+ + Sbjct: 987 RRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVR 1046 Query: 185 ---DYEYLLAMSIGTLT---LEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKE 346 Y+Y+L I T LE +N I++ +K ++ L+ T P +WL +LD ++ Sbjct: 1047 VDDSYDYVLRKPITFYTKTSLENLNRKISETEKR---IDKLKKTAPVQMWLDELDRFDRA 1103 Query: 347 LD 352 + Sbjct: 1104 FE 1105
>GFAP_CARAU (P48677) Glial fibrillary acidic protein homolog| Length = 359 Score = 30.8 bits (68), Expect = 3.3 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +2 Query: 227 LEKVNELIAQQDKLKADLEMLRNTEPQTLW------LRDLDALEKELDVCDAKLEAEQQN 388 +EKV L Q L A+L LR EP L LR+L L+ A+LE E+ N Sbjct: 11 IEKVRFLEQQNKMLVAELNQLRGKEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDN 70 Query: 389 RSSKRA 406 +S A Sbjct: 71 LASDLA 76
>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 30.4 bits (67), Expect = 4.2 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Frame = +2 Query: 182 SDYEYLLAMSIGTLTLEKVNE--LIAQQDKLKADLEMLRNTEPQTLWLRDLD----ALEK 343 S++E +A + + EKV+ L A K+ +LE LRN QTL R LD A Sbjct: 674 SNWEAQIADILSWVNDEKVSRGYLQALATKMAEELESLRNVGTQTLPTRPLDHQWKARRL 733 Query: 344 ELDVCDAKLEAEQQNRSSKRAKNS 415 + A+LE + + RAK S Sbjct: 734 QKMEASARLELQSALEAEIRAKQS 757
>TOP2_TRYBB (P12531) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1221 Score = 30.4 bits (67), Expect = 4.2 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 15/116 (12%) Frame = +2 Query: 41 KRADLFLELKQKNYT----PFPKKKPTSGPVA---------VGSTEAEEDNDQSPAEAAA 181 +R DL+ + +Q+N T ++K T V +TEA + S Sbjct: 987 RRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFGAGHIDFANATEATLEKVCSKLGLVR 1046 Query: 182 SD--YEYLLAMSIGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEK 343 D ++Y+L I T L+ + + + +E L+ T P LWL +LD ++ Sbjct: 1047 VDDSFDYILRKPITFYTKTSFENLLKKIAETERRIEALKKTTPVQLWLGELDQFDR 1102
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 30.4 bits (67), Expect = 4.2 Identities = 31/130 (23%), Positives = 52/130 (40%) Frame = +2 Query: 32 NNRKRADLFLELKQKNYTPFPKKKPTSGPVAVGSTEAEEDNDQSPAEAAASDYEYLLAMS 211 NNR +D ++ KN + K+K +S + S ++D S A+ A E Sbjct: 1865 NNRSESDKKIKKSDKNASSSDKRKNSSTSQSSKSATPRIEDDSSEADDTADKAE------ 1918 Query: 212 IGTLTLEKVNELIAQQDKLKADLEMLRNTEPQTLWLRDLDALEKELDVCDAKLEAEQQNR 391 E +Q+K + DL E + R E+E + AK E +++ R Sbjct: 1919 ---KNQRHEKEKKERQEKREKDLRKQVEREEKD---RKAQQEEREKEDRKAKEEEKERER 1972 Query: 392 SSKRAKNSEK 421 K ++ EK Sbjct: 1973 EKKAQEDREK 1982
>FEMX_STAES (Q8CNE9) Aminoacyltransferase femX (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance X) Length = 416 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +2 Query: 149 DNDQSPAEAAASDYEYLLAMSIGTLTLEKVNEL---IAQQDKLKADLEMLRNTEPQTLWL 319 D EA ++ E L + TL K+N++ I + ++LK+DL L +EP+ ++L Sbjct: 240 DTVNQDLEAQLAEKEKLQSKKQDKKTLNKLNDIDNKIKKTNELKSDLTELEKSEPEGIYL 299
>FEMX_STAEQ (Q5HLY6) Aminoacyltransferase femX (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance X) Length = 416 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +2 Query: 149 DNDQSPAEAAASDYEYLLAMSIGTLTLEKVNEL---IAQQDKLKADLEMLRNTEPQTLWL 319 D EA ++ E L + TL K+N++ I + ++LK+DL L +EP+ ++L Sbjct: 240 DTVNQDLEAQLAEKEKLQSKKQDKKTLNKLNDIDNKIKKTNELKSDLTELEKSEPEGIYL 299
>MRCKG_HUMAN (Q6DT37) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 29.6 bits (65), Expect = 7.2 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Frame = +2 Query: 182 SDYEYLLAMSIGTLTLEKVNE--LIAQQDKLKADLEMLRNTEPQTLWLRDLD----ALEK 343 S++E LA + + EKV+ L A K+ +LE LRN QTL R LD A Sbjct: 675 SNWEAQLADILSWVNDEKVSRGYLQALATKMAEELESLRNVGTQTLPARPLDHQWKARRL 734 Query: 344 ELDVCDAKLEAEQQNRSSKRAK 409 + A+LE + + RAK Sbjct: 735 QKMEASARLELQSALEAEIRAK 756
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = +2 Query: 329 DALEKELDVCDAKLEAEQQNRSSKRAKNSEKAK 427 + LEK+L AKLEA + NR ++RA++ +K + Sbjct: 781 ETLEKKLSDWQAKLEAVRNNRLAERAEDRKKKR 813
>SYV_STAES (Q8CS83) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 876 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +2 Query: 230 EKVNELIAQQDKLKADLEMLRNTEPQTLWL-RDLDALEKELDVCDAKLEAEQ-QNRSSKR 403 EK + K+ LE L + + + L ++LD L+ ELD D KL E N++ ++ Sbjct: 789 EKAMTTVVVAGKVVLPLEGLIDMDKEIARLEKELDKLQSELDRVDKKLSNENFVNKAPEK 848 Query: 404 AKNSEKAK 427 N EK K Sbjct: 849 IINEEKEK 856
>SYV_STAEQ (Q5HNN9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 876 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +2 Query: 230 EKVNELIAQQDKLKADLEMLRNTEPQTLWL-RDLDALEKELDVCDAKLEAEQ-QNRSSKR 403 EK + K+ LE L + + + L ++LD L+ ELD D KL E N++ ++ Sbjct: 789 EKAMTTVVVAGKVVLPLEGLIDMDKEIARLEKELDKLQSELDRVDKKLSNENFVNKAPEK 848 Query: 404 AKNSEKAK 427 N EK K Sbjct: 849 IINEEKEK 856
>RADI_MOUSE (P26043) Radixin (ESP10)| Length = 583 Score = 29.3 bits (64), Expect = 9.5 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%) Frame = +2 Query: 95 KKKPTSGPVAVGSTEAEEDNDQSPAEAAASDYEYLLAMSIGTLTLEKVNELIAQQDKLKA 274 ++KP + V +A E+ Q E A L EK IA+++K + Sbjct: 294 RRKPDTIEVQQMKAQAREEKHQKQLERAQ-------------LENEKKKREIAEKEKERI 340 Query: 275 D------LEMLRNTEPQTLWL-RDLD-----ALEKELDVCDAKLEAEQQNRSSKRAKNSE 418 + +E LR E QT+ ++L+ ALE E + AK EAE+ +R + A+ ++ Sbjct: 341 EREKEELMERLRQIEEQTVKAQKELEEQTRKALELEQERQRAKEEAERLDRERRAAEEAK 400 Query: 419 KA 424 A Sbjct: 401 SA 402
>IQGA2_HUMAN (Q13576) Ras GTPase-activating-like protein IQGAP2| Length = 1574 Score = 29.3 bits (64), Expect = 9.5 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = +2 Query: 167 AEAAASDYEYLLAMSIGTLT-LEKVNELIAQQD-KLKADLEMLRNTEPQTLWLRDLDALE 340 A A DY+ L+ LT + K L+ Q D + +LE+ R E +R LE Sbjct: 762 ANKARDDYKTLVGSENPPLTVIRKFVYLLDQSDLDFQEELEVARLREEVVTKIRANQQLE 821 Query: 341 KELDVCDAKLEAEQQNR 391 K+L++ D K+ +NR Sbjct: 822 KDLNLMDIKIGLLVKNR 838
>L_HENDV (O89344) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2244 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 251 AQQDKLKADLEMLRNTEPQTLWLRDLDALE 340 +Q DKLK + L N P+T W+ +LD+ E Sbjct: 1894 SQSDKLKGLVVPLFNGRPETTWIGNLDSYE 1923 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,520,460 Number of Sequences: 219361 Number of extensions: 1021823 Number of successful extensions: 4049 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 3885 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4033 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
