ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags29h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550191.1| Oryza sativa (japonica cultivar-group), mRNA 252 1e-63
2dbj|AK060171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
3dbj|AK071635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 7e-59
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
5dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
6gb|BT016393.1| Zea mays clone Contig226 mRNA sequence 48 0.036
7ref|XM_416998.1| PREDICTED: Gallus gallus similar to Cutaneous T... 48 0.036
8gb|AY107211.1| Zea mays PCO136611 mRNA sequence 48 0.036
9gb|AY107198.1| Zea mays PCO093409 mRNA sequence 48 0.036
10gb|AC165346.4| Mus musculus BAC clone RP23-354N5 from chromosome... 44 0.57
11gb|AC124183.4| Mus musculus BAC clone RP23-213I18 from 13, compl... 44 0.57
12gb|AE000512.1| Thermotoga maritima MSB8, complete genome 42 2.2
13gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 40 8.8
14gb|AC073089.5| Homo sapiens BAC clone RP11-324F21 from 7, comple... 40 8.8
15ref|XM_753463.1| Ustilago maydis 521 hypothetical protein (UM024... 40 8.8
16gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome... 40 8.8
17emb|AL137798.8| Human DNA sequence from clone RP5-1182A14 on chr... 40 8.8
18emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 o... 40 8.8
19gb|AE002160.2| Chlamydia muridarum Nigg, complete genome 40 8.8
20gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.8
21emb|AL807830.10| Mouse DNA sequence from clone RP23-303I9 on chr... 40 8.8
22emb|AL591805.14| Mouse DNA sequence from clone RP23-90N15 on chr... 40 8.8

>ref|XM_550191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1332

 Score =  252 bits (127), Expect = 1e-63
 Identities = 371/453 (81%), Gaps = 12/453 (2%)
 Strand = Plus / Plus

                                                                       
Query: 14  atcgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctca 73
           |||| |||||||| || ||||||||||||||||| || | ||||||||||||||| ||||
Sbjct: 524 atcggtgtggagacaggggccatatagaaagggactgccggaacagccctaagaatctca 583

                                                                       
Query: 74  agcgtggaaagagttactccagatctccatctcctcgccgcggaagggtgcgcgatagga 133
           |||||||||  || ||||| ||||| ||||| ||||| || || |||   || | |||||
Sbjct: 584 agcgtggaagaagctactcaagatccccatcccctcgtcgtgggaggagccgtggtagga 643

                                                                       
Query: 134 gctacagcaggagtcgcagtaggagctacagccgctctgtttccccaaggaggga----- 188
           ||||||||||||| || || |||||||||||||||||    || |||||||||||     
Sbjct: 644 gctacagcaggagccgtagcaggagctacagccgctcccagtctccaaggagggatagcc 703

                                                                       
Query: 189 ----tgaaaggcgctcaaggagcccccgtgacagtcgcagcccaaggaggagcccccgtg 244
               ||||||| | ||||||||||| ||||||||||| ||||| ||| | ||||||||||
Sbjct: 704 gtaatgaaaggagatcaaggagccctcgtgacagtcggagccctaggggaagcccccgtg 763

                                                                       
Query: 245 acagtcgcagccctaggaggagcccccgagacagtcgcagccctatgaagagcccccgtg 304
           ||||||||||||||||| |||||||||| |||||||||||||||| |  |||||| || |
Sbjct: 764 acagtcgcagccctagggggagcccccgtgacagtcgcagccctaaggggagccctcgcg 823

                                                                       
Query: 305 gcagtcgcagccctatgaggagcccccgtgacagccgcagccctaggaggagtgcttcac 364
            ||  |  ||||||| | | ||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 824 acacccagagccctaggggaagccctcgtgatagccgcagccctaggagaagtgcttcac 883

                                                                       
Query: 365 ctgccaaggggagggcccggagccccacccctcctggcagcagaagccctgcaccaaggg 424
           |  |||| ||||||  ||| ||||| ||||||  || |||||| || |||||||||||||
Sbjct: 884 cacccaacgggaggaaccgcagccctacccctaatgccagcaggagtcctgcaccaaggg 943

                                            
Query: 425 agaacagcaggagtccgatgaaggctgacagcc 457
              |||||||||| || ||||  ||||||||||
Sbjct: 944 ---acagcaggagcccaatgagagctgacagcc 973



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 464  acatgagcccagctgcaaatggtcgtagcccgagccccagggacggcgaagacaatggca 523
            |||||||  ||||||| ||||| || ||||| |||||||||||    |||||||||||||
Sbjct: 1001 acatgagtacagctgccaatggccggagcccaagccccagggattatgaagacaatggca 1060

                   
Query: 524  accatcg 530
            | |||||
Sbjct: 1061 atcatcg 1067



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>dbj|AK060171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F07, full
           insert sequence
          Length = 1332

 Score =  252 bits (127), Expect = 1e-63
 Identities = 371/453 (81%), Gaps = 12/453 (2%)
 Strand = Plus / Plus

                                                                       
Query: 14  atcgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctca 73
           |||| |||||||| || ||||||||||||||||| || | ||||||||||||||| ||||
Sbjct: 524 atcggtgtggagacaggggccatatagaaagggactgccggaacagccctaagaatctca 583

                                                                       
Query: 74  agcgtggaaagagttactccagatctccatctcctcgccgcggaagggtgcgcgatagga 133
           |||||||||  || ||||| ||||| ||||| ||||| || || |||   || | |||||
Sbjct: 584 agcgtggaagaagctactcaagatccccatcccctcgtcgtgggaggagccgtggtagga 643

                                                                       
Query: 134 gctacagcaggagtcgcagtaggagctacagccgctctgtttccccaaggaggga----- 188
           ||||||||||||| || || |||||||||||||||||    || |||||||||||     
Sbjct: 644 gctacagcaggagccgtagcaggagctacagccgctcccagtctccaaggagggatagcc 703

                                                                       
Query: 189 ----tgaaaggcgctcaaggagcccccgtgacagtcgcagcccaaggaggagcccccgtg 244
               ||||||| | ||||||||||| ||||||||||| ||||| ||| | ||||||||||
Sbjct: 704 gtaatgaaaggagatcaaggagccctcgtgacagtcggagccctaggggaagcccccgtg 763

                                                                       
Query: 245 acagtcgcagccctaggaggagcccccgagacagtcgcagccctatgaagagcccccgtg 304
           ||||||||||||||||| |||||||||| |||||||||||||||| |  |||||| || |
Sbjct: 764 acagtcgcagccctagggggagcccccgtgacagtcgcagccctaaggggagccctcgcg 823

                                                                       
Query: 305 gcagtcgcagccctatgaggagcccccgtgacagccgcagccctaggaggagtgcttcac 364
            ||  |  ||||||| | | ||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 824 acacccagagccctaggggaagccctcgtgatagccgcagccctaggagaagtgcttcac 883

                                                                       
Query: 365 ctgccaaggggagggcccggagccccacccctcctggcagcagaagccctgcaccaaggg 424
           |  |||| ||||||  ||| ||||| ||||||  || |||||| || |||||||||||||
Sbjct: 884 cacccaacgggaggaaccgcagccctacccctaatgccagcaggagtcctgcaccaaggg 943

                                            
Query: 425 agaacagcaggagtccgatgaaggctgacagcc 457
              |||||||||| || ||||  ||||||||||
Sbjct: 944 ---acagcaggagcccaatgagagctgacagcc 973



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 464  acatgagcccagctgcaaatggtcgtagcccgagccccagggacggcgaagacaatggca 523
            |||||||  ||||||| ||||| || ||||| |||||||||||    |||||||||||||
Sbjct: 1001 acatgagtacagctgccaatggccggagcccaagccccagggattatgaagacaatggca 1060

                   
Query: 524  accatcg 530
            | |||||
Sbjct: 1061 atcatcg 1067



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>dbj|AK071635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100L15, full
            insert sequence
          Length = 1377

 Score =  236 bits (119), Expect = 7e-59
 Identities = 369/453 (81%), Gaps = 12/453 (2%)
 Strand = Plus / Plus

                                                                        
Query: 14   atcgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctca 73
            |||| |||||||| || ||||||||||| ||||| || | ||||||||||||||| ||||
Sbjct: 569  atcggtgtggagacaggggccatatagagagggactgccggaacagccctaagaatctca 628

                                                                        
Query: 74   agcgtggaaagagttactccagatctccatctcctcgccgcggaagggtgcgcgatagga 133
            |||||||||  || | ||| ||||| ||||| ||||| || || |||   || | |||||
Sbjct: 629  agcgtggaagaagctgctcaagatccccatcccctcgtcgtgggaggagccgtggtagga 688

                                                                        
Query: 134  gctacagcaggagtcgcagtaggagctacagccgctctgtttccccaaggaggga----- 188
            ||||||||||||| || || |||||||||||||||||    || |||||||||||     
Sbjct: 689  gctacagcaggagccgtagcaggagctacagccgctcccagtctccaaggagggatagcc 748

                                                                        
Query: 189  ----tgaaaggcgctcaaggagcccccgtgacagtcgcagcccaaggaggagcccccgtg 244
                ||||||| | ||||||||||| ||||||||||| ||||| ||| | ||||||||||
Sbjct: 749  gtaatgaaaggagatcaaggagccctcgtgacagtcggagccctaggggaagcccccgtg 808

                                                                        
Query: 245  acagtcgcagccctaggaggagcccccgagacagtcgcagccctatgaagagcccccgtg 304
            ||||||||||||||||| |||||||||| |||||||||||||||| |  |||||| || |
Sbjct: 809  acagtcgcagccctagggggagcccccgtgacagtcgcagccctaaggggagccctcgcg 868

                                                                        
Query: 305  gcagtcgcagccctatgaggagcccccgtgacagccgcagccctaggaggagtgcttcac 364
             ||  |  ||||||| | | ||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 869  acacccagagccctaggggaagccctcgtgatagccgcagccctaggagaagtgcttcac 928

                                                                        
Query: 365  ctgccaaggggagggcccggagccccacccctcctggcagcagaagccctgcaccaaggg 424
            |  |||| ||||||  ||| ||||| ||||||  || |||||| || |||||||||||||
Sbjct: 929  cacccaacgggaggaaccgcagccctacccctaatgccagcaggagtcctgcaccaaggg 988

                                             
Query: 425  agaacagcaggagtccgatgaaggctgacagcc 457
               |||||||||| || ||||  ||||||||||
Sbjct: 989  ---acagcaggagcccaatgagagctgacagcc 1018



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 464  acatgagcccagctgcaaatggtcgtagcccgagccccagggacggcgaagacaatggca 523
            |||||||  ||||||| ||||| || ||||| |||||||||||    |||||||||||||
Sbjct: 1046 acatgagtacagctgccaatggccggagcccaagccccagggattatgaagacaatggca 1105

                   
Query: 524  accatcg 530
            | |||||
Sbjct: 1106 atcatcg 1112



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  182 bits (92), Expect = 1e-42
 Identities = 226/270 (83%), Gaps = 3/270 (1%)
 Strand = Plus / Minus

                                                                           
Query: 188     atgaaaggcgctcaaggagcccccgtgacagtcgcagcccaaggaggagcccccgtgaca 247
               |||||||| | ||||||||||| ||||||||||| ||||| ||| | |||||||||||||
Sbjct: 2985954 atgaaaggagatcaaggagccctcgtgacagtcggagccctaggggaagcccccgtgaca 2985895

                                                                           
Query: 248     gtcgcagccctaggaggagcccccgagacagtcgcagccctatgaagagcccccgtggca 307
               |||||||||||||| |||||||||| |||||||||||||||| |  |||||| || | ||
Sbjct: 2985894 gtcgcagccctagggggagcccccgtgacagtcgcagccctaaggggagccctcgcgaca 2985835

                                                                           
Query: 308     gtcgcagccctatgaggagcccccgtgacagccgcagccctaggaggagtgcttcacctg 367
                 |  ||||||| | | ||||| ||||| ||||||||||||||||| |||||||||||  
Sbjct: 2985834 cccagagccctaggggaagccctcgtgatagccgcagccctaggagaagtgcttcaccac 2985775

                                                                           
Query: 368     ccaaggggagggcccggagccccacccctcctggcagcagaagccctgcaccaagggaga 427
               |||| ||||||  ||| ||||| ||||||  || |||||| || |||||||||||||   
Sbjct: 2985774 ccaacgggaggaaccgcagccctacccctaatgccagcaggagtcctgcaccaaggg--- 2985718

                                             
Query: 428     acagcaggagtccgatgaaggctgacagcc 457
               |||||||||| || ||||  ||||||||||
Sbjct: 2985717 acagcaggagcccaatgagagctgacagcc 2985688



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 14      atcgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctca 73
               |||| |||||||| || ||||||||||||||||| || | ||||||||||||||| ||||
Sbjct: 2986532 atcggtgtggagacaggggccatatagaaagggactgccggaacagccctaagaatctca 2986473

                 
Query: 74      ag 75
               ||
Sbjct: 2986472 ag 2986471



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 129     taggagctacagcaggagtcgcagtaggagctacag 164
               |||||||||||||||||| || || |||||||||||
Sbjct: 2986336 taggagctacagcaggagccgtagcaggagctacag 2986301



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                           
Query: 464     acatgagcccagctgcaaatggtcgtagcccgagccccagggacggcgaagacaatggca 523
               |||||||  ||||||| ||||| || ||||| |||||||||||    |||||||||||||
Sbjct: 2985660 acatgagtacagctgccaatggccggagcccaagccccagggattatgaagacaatggca 2985601

                      
Query: 524     accatcg 530
               | |||||
Sbjct: 2985600 atcatcg 2985594



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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0011G08
          Length = 139490

 Score =  182 bits (92), Expect = 1e-42
 Identities = 226/270 (83%), Gaps = 3/270 (1%)
 Strand = Plus / Minus

                                                                         
Query: 188   atgaaaggcgctcaaggagcccccgtgacagtcgcagcccaaggaggagcccccgtgaca 247
             |||||||| | ||||||||||| ||||||||||| ||||| ||| | |||||||||||||
Sbjct: 67471 atgaaaggagatcaaggagccctcgtgacagtcggagccctaggggaagcccccgtgaca 67412

                                                                         
Query: 248   gtcgcagccctaggaggagcccccgagacagtcgcagccctatgaagagcccccgtggca 307
             |||||||||||||| |||||||||| |||||||||||||||| |  |||||| || | ||
Sbjct: 67411 gtcgcagccctagggggagcccccgtgacagtcgcagccctaaggggagccctcgcgaca 67352

                                                                         
Query: 308   gtcgcagccctatgaggagcccccgtgacagccgcagccctaggaggagtgcttcacctg 367
               |  ||||||| | | ||||| ||||| ||||||||||||||||| |||||||||||  
Sbjct: 67351 cccagagccctaggggaagccctcgtgatagccgcagccctaggagaagtgcttcaccac 67292

                                                                         
Query: 368   ccaaggggagggcccggagccccacccctcctggcagcagaagccctgcaccaagggaga 427
             |||| ||||||  ||| ||||| ||||||  || |||||| || |||||||||||||   
Sbjct: 67291 ccaacgggaggaaccgcagccctacccctaatgccagcaggagtcctgcaccaaggg--- 67235

                                           
Query: 428   acagcaggagtccgatgaaggctgacagcc 457
             |||||||||| || ||||  ||||||||||
Sbjct: 67234 acagcaggagcccaatgagagctgacagcc 67205



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 14    atcgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctca 73
             |||| |||||||| || ||||||||||||||||| || | ||||||||||||||| ||||
Sbjct: 68049 atcggtgtggagacaggggccatatagaaagggactgccggaacagccctaagaatctca 67990

               
Query: 74    ag 75
             ||
Sbjct: 67989 ag 67988



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 129   taggagctacagcaggagtcgcagtaggagctacag 164
             |||||||||||||||||| || || |||||||||||
Sbjct: 67853 taggagctacagcaggagccgtagcaggagctacag 67818



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                         
Query: 464   acatgagcccagctgcaaatggtcgtagcccgagccccagggacggcgaagacaatggca 523
             |||||||  ||||||| ||||| || ||||| |||||||||||    |||||||||||||
Sbjct: 67177 acatgagtacagctgccaatggccggagcccaagccccagggattatgaagacaatggca 67118

                    
Query: 524   accatcg 530
             | |||||
Sbjct: 67117 atcatcg 67111



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>gb|BT016393.1| Zea mays clone Contig226 mRNA sequence
          Length = 1003

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 16  cgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctcaag 75
           |||||||| || || ||||||||||||||  |||| |||||||| || | |||||||| |
Sbjct: 174 cgttgtggcgaaaggggccatatagaaagaaattgccagaacagtccaaggaacctcagg 233

               
Query: 76  cgtg 79
           ||||
Sbjct: 234 cgtg 237



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>ref|XM_416998.1| PREDICTED: Gallus gallus similar to Cutaneous T-cell lymphoma tumor
           antigen se70-2 (LOC418804), mRNA
          Length = 3178

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 133 agctacagcaggagtcgcagtaggagct 160
           ||||||||||||||||| ||||||||||
Sbjct: 650 agctacagcaggagtcggagtaggagct 677



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>gb|AY107211.1| Zea mays PCO136611 mRNA sequence
          Length = 1362

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                       
Query: 16  cgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctcaag 75
           ||||||||||| || || |||||||||||  |||| |||||||| |||| || | ||| |
Sbjct: 482 cgttgtggagaaagagggcatatagaaagaaattgccagaacagtcctaggagcgtcagg 541

                                                       
Query: 76  cgtggaaagagttactccagatctccatctcctcgccgcggaag 119
           |||| ||  ||||||||  | || |||||||| ||||| |||||
Sbjct: 542 cgtgaaagaagttactcacgctccccatctccacgccgtggaag 585



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>gb|AY107198.1| Zea mays PCO093409 mRNA sequence
          Length = 1566

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 16  cgttgtggagatagtggccatatagaaagggattgtcagaacagccctaagaacctcaag 75
           |||||||| || || ||||||||||||||  |||| |||||||| || | |||||||| |
Sbjct: 728 cgttgtggcgaaaggggccatatagaaagaaattgccagaacagtccaaggaacctcagg 787

               
Query: 76  cgtg 79
           ||||
Sbjct: 788 cgtg 791



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>gb|AC165346.4| Mus musculus BAC clone RP23-354N5 from chromosome 13, complete sequence
          Length = 233740

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 396    tcctggcagcagaagccctgca 417
              ||||||||||||||||||||||
Sbjct: 143545 tcctggcagcagaagccctgca 143566



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>gb|AC124183.4| Mus musculus BAC clone RP23-213I18 from 13, complete sequence
          Length = 215251

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 396    tcctggcagcagaagccctgca 417
              ||||||||||||||||||||||
Sbjct: 151008 tcctggcagcagaagccctgca 150987



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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 90      ctccagatctccatctcctcg 110
               |||||||||||||||||||||
Sbjct: 1513485 ctccagatctccatctcctcg 1513505



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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 628   gtcgatcaaattcttcctac 647
             ||||||||||||||||||||
Sbjct: 83367 gtcgatcaaattcttcctac 83348



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>gb|AC073089.5| Homo sapiens BAC clone RP11-324F21 from 7, complete sequence
          Length = 171788

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 603   gtgcatcacctggtgagagt 622
             ||||||||||||||||||||
Sbjct: 90686 gtgcatcacctggtgagagt 90667



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>ref|XM_753463.1| Ustilago maydis 521 hypothetical protein (UM02409.1) partial mRNA
          Length = 759

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 aaggcgctcaaggagccccc 211
           ||||||||||||||||||||
Sbjct: 508 aaggcgctcaaggagccccc 527



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>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence
          Length = 184772

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 585   agtgttcacccagtgggagt 604
             ||||||||||||||||||||
Sbjct: 99021 agtgttcacccagtgggagt 99002



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>emb|AL137798.8| Human DNA sequence from clone RP5-1182A14 on chromosome 1 Contains
            the 5' end of a novel gene, a novel gene, a macrophage
            stimulating 1 (hepatocyte growth factor-like)(MST1)
            pseudogene and three CpG islands, complete sequence
          Length = 146141

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 254  gccctaggaggagcccccgagaca 277
            ||||||||||||||||| ||||||
Sbjct: 2438 gccctaggaggagcccctgagaca 2461



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>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21
             Contains a novel pseudogene, a eukaryotic translation
             initiation factor 1A pseudogene 1 (EIF1AP1), part of a
             novel gene (LOC284729), a macrophage stimulating 1
             (hepatocyte growth factor-like)(MST1) pseudogene and five
             CpG islands, complete sequence
          Length = 118067

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 254   gccctaggaggagcccccgagaca 277
             ||||||||||||||||| ||||||
Sbjct: 28729 gccctaggaggagcccctgagaca 28706



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>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome
          Length = 1072950

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    tggcagcagaagccctgcac 418
              ||||||||||||||||||||
Sbjct: 408284 tggcagcagaagccctgcac 408265



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 564    ttaagtggatcaaattcttccagt 587
              ||||| ||||||||||||||||||
Sbjct: 759683 ttaagcggatcaaattcttccagt 759706



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>emb|AL807830.10| Mouse DNA sequence from clone RP23-303I9 on chromosome 4, complete
             sequence
          Length = 79426

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tactccagatctccatctcc 107
             ||||||||||||||||||||
Sbjct: 66926 tactccagatctccatctcc 66945



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>emb|AL591805.14| Mouse DNA sequence from clone RP23-90N15 on chromosome 2, complete
             sequence
          Length = 93682

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tcagaacagccctaagaacc 70
             ||||||||||||||||||||
Sbjct: 12853 tcagaacagccctaagaacc 12834


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,400,477
Number of Sequences: 3902068
Number of extensions: 4400477
Number of successful extensions: 76974
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76828
Number of HSP's gapped (non-prelim): 128
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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