ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29g21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 295 bits (149), Expect = 9e-77 Identities = 330/389 (84%), Gaps = 6/389 (1%) Strand = Plus / Plus Query: 206 cagaaatttatggggagctcccagaatgggatacgttcgttggagacaagggtgaacggt 265 |||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||| Sbjct: 7544479 cagaaatttatggggagctctcagaatgggatccgttccttggagacacgggtgaacgga 7544538 Query: 266 ctggaaatggcactggacgagatctcgcgtgatctggccgcctcctcaggacggatgccg 325 ||||| ||||||||||| |||||||| |||||| |||| || || |||||| ||||||| Sbjct: 7544539 ctggagatggcactggatgagatctcccgtgatttggctgcttcttcaggaaggatgcca 7544598 Query: 326 agcagcgaacctgacatgaactgctgcatcccgagcccaaaattctggagaaaaaatgat 385 ||||| |||||||| |||||||||||||||| ||||| ||||||||||||| | ||||| Sbjct: 7544599 agcagtgaacctgatatgaactgctgcatccttagcccgaaattctggagaagacatgat 7544658 Query: 386 ggtggtagatacatttcaaggtaccccgtgtccgacctagcaaaccactctgaggaggtc 445 || |||||||| || | |||| || | |||||| |||||||| |||| |||||| | Sbjct: 7544659 ggcagtagatactcatccaagtactccatctccgacatagcaaactactccgaggagagc 7544718 Query: 446 agagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaac 505 ||| ||||| | |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 7544719 agaacttcttacaagtgggagaggcagaagtttggagttcagggtg---ttgtcaccaac 7544775 Query: 506 ccattagcagagtctccgaacacttcatacgtaaggagcacgttggttgctcaggaaggc 565 |||||||||||| || ||| |||||| || | | | |||| | ||||||||||||| | Sbjct: 7544776 ccattagcagag---ccaaacgcttcattcgcaggaaacacggttgttgctcaggaagcc 7544832 Query: 566 aggaggcagaattcagcccaatacaagtc 594 ||||| ||||||||||| ||||| ||||| Sbjct: 7544833 aggagacagaattcagctcaatataagtc 7544861 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 114 ttcagttagttcacaaagatgaagacctgtccaagatcaggatgcagctagttcagatag 173 |||||| || |||||| || || |||||||| ||||||||||||||||| |||||||| | Sbjct: 7543551 ttcagtcaggtcacaaggaagaggacctgtcaaagatcaggatgcagcttgttcagattg 7543610 Query: 174 agaatcagcagacaaacctgctcgaccttctccag 208 ||||||||||||| | | ||||| | ||||||||| Sbjct: 7543611 agaatcagcagaccagcttgctcaatcttctccag 7543645 Score = 60.0 bits (30), Expect = 9e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 12 gggtctagagttgttcc-tacaacggggacggtgactcggaagaga 56 ||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct: 7543475 gggtctagagttgttccatacaatggggacgatgactcggaagaga 7543520
>dbj|AP004725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0412C04 Length = 146849 Score = 295 bits (149), Expect = 9e-77 Identities = 330/389 (84%), Gaps = 6/389 (1%) Strand = Plus / Plus Query: 206 cagaaatttatggggagctcccagaatgggatacgttcgttggagacaagggtgaacggt 265 |||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||| Sbjct: 104410 cagaaatttatggggagctctcagaatgggatccgttccttggagacacgggtgaacgga 104469 Query: 266 ctggaaatggcactggacgagatctcgcgtgatctggccgcctcctcaggacggatgccg 325 ||||| ||||||||||| |||||||| |||||| |||| || || |||||| ||||||| Sbjct: 104470 ctggagatggcactggatgagatctcccgtgatttggctgcttcttcaggaaggatgcca 104529 Query: 326 agcagcgaacctgacatgaactgctgcatcccgagcccaaaattctggagaaaaaatgat 385 ||||| |||||||| |||||||||||||||| ||||| ||||||||||||| | ||||| Sbjct: 104530 agcagtgaacctgatatgaactgctgcatccttagcccgaaattctggagaagacatgat 104589 Query: 386 ggtggtagatacatttcaaggtaccccgtgtccgacctagcaaaccactctgaggaggtc 445 || |||||||| || | |||| || | |||||| |||||||| |||| |||||| | Sbjct: 104590 ggcagtagatactcatccaagtactccatctccgacatagcaaactactccgaggagagc 104649 Query: 446 agagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaac 505 ||| ||||| | |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 104650 agaacttcttacaagtgggagaggcagaagtttggagttcagggtg---ttgtcaccaac 104706 Query: 506 ccattagcagagtctccgaacacttcatacgtaaggagcacgttggttgctcaggaaggc 565 |||||||||||| || ||| |||||| || | | | |||| | ||||||||||||| | Sbjct: 104707 ccattagcagag---ccaaacgcttcattcgcaggaaacacggttgttgctcaggaagcc 104763 Query: 566 aggaggcagaattcagcccaatacaagtc 594 ||||| ||||||||||| ||||| ||||| Sbjct: 104764 aggagacagaattcagctcaatataagtc 104792 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 114 ttcagttagttcacaaagatgaagacctgtccaagatcaggatgcagctagttcagatag 173 |||||| || |||||| || || |||||||| ||||||||||||||||| |||||||| | Sbjct: 103482 ttcagtcaggtcacaaggaagaggacctgtcaaagatcaggatgcagcttgttcagattg 103541 Query: 174 agaatcagcagacaaacctgctcgaccttctccag 208 ||||||||||||| | | ||||| | ||||||||| Sbjct: 103542 agaatcagcagaccagcttgctcaatcttctccag 103576 Score = 60.0 bits (30), Expect = 9e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 12 gggtctagagttgttcc-tacaacggggacggtgactcggaagaga 56 ||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct: 103406 gggtctagagttgttccatacaatggggacgatgactcggaagaga 103451
>gb|AY106868.1| Zea mays PCO072630 mRNA sequence Length = 1321 Score = 93.7 bits (47), Expect = 7e-16 Identities = 148/181 (81%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 200 cttctccagaaatttatggggagctcccagaatgggatacgttcgttggagacaagggtg 259 |||||||||||||||||||||| ||| |||| || || ||||| ||||||||||| ||| Sbjct: 449 cttctccagaaatttatggggaagtccgagaacggtatgcgttctttggagacaagagtg 508 Query: 260 aacggtctggaaatggcactggacgagatctcgcgtgatctggccgcctcctcaggacgg 319 | || ||||| ||||| |||| |||||||| |||||| ||||| ||| |||||| || Sbjct: 509 catgggctggagatggctttggatgagatctctcgtgatttggccttctcttcaggaagg 568 Query: 320 atgccgagcagcgaacctga---catgaactgctgcatcccgagcccaaaattctggaga 376 ||| | ||||| || ||||| | || |||||||| ||||||||||||||||||||| Sbjct: 569 atgtcaagcagagagcctgatgcaaagacgtgctgcattccgagcccaaaattctggaga 628 Query: 377 a 377 | Sbjct: 629 a 629 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 445 cagagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaa 504 |||| ||||| | |||||||||||||||| |||||| |||||||| ||| ||||| || Sbjct: 697 cagaacttcttacaagtgggagaggcagaggtttgggcttcagggt--gtttgtcacaaa 754 Query: 505 cccattagc 513 ||||||||| Sbjct: 755 cccattagc 763
>ref|XM_467700.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1959 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 445 cagagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaa 504 |||| ||||| | ||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 1800 cagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcaccaa 1859 Query: 505 cccattagc 513 ||| ||||| Sbjct: 1860 cccgttagc 1868
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 445 cagagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaa 504 |||| ||||| | ||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 30949762 cagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcaccaa 30949703 Query: 505 cccattagc 513 ||| ||||| Sbjct: 30949702 cccgttagc 30949694
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 445 cagagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaa 504 |||| ||||| | ||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 4718 cagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcaccaa 4659 Query: 505 cccattagc 513 ||| ||||| Sbjct: 4658 cccgttagc 4650
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684F11 Length = 147731 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 445 cagagcttctcataagtgggagaggcagaagtttggagttcagggtgggttcgtcaccaa 504 |||| ||||| | ||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 133339 cagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcaccaa 133280 Query: 505 cccattagc 513 ||| ||||| Sbjct: 133279 cccgttagc 133271
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 196 cgaccttctccagaaatttatgg 218 ||||||||||||||||||||||| Sbjct: 4043541 cgaccttctccagaaatttatgg 4043519
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 196 cgaccttctccagaaatttatgg 218 ||||||||||||||||||||||| Sbjct: 4043655 cgaccttctccagaaatttatgg 4043633
>emb|AL671934.4| Human DNA sequence from clone RP11-508H18 on chromosome 6 Contains part of a novel gene, complete sequence Length = 61294 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 463 ggagaggcagaagtttggagttca 486 |||||||||| ||||||||||||| Sbjct: 4723 ggagaggcagtagtttggagttca 4746
>emb|CR847545.11| Zebrafish DNA sequence from clone DKEY-184N3 in linkage group 5, complete sequence Length = 83135 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 aaattctggagaaaaaatga 384 |||||||||||||||||||| Sbjct: 71253 aaattctggagaaaaaatga 71234
>gb|AC008574.5| Homo sapiens chromosome 5 clone CTC-552D5, complete sequence Length = 36362 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 atagagaatcagcagacaaa 189 |||||||||||||||||||| Sbjct: 2202 atagagaatcagcagacaaa 2183
>gb|AC108095.2| Homo sapiens chromosome 5 clone CTD-3080F23, complete sequence Length = 149102 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 atagagaatcagcagacaaa 189 |||||||||||||||||||| Sbjct: 148884 atagagaatcagcagacaaa 148865
>gb|AC107027.9| Homo sapiens 3 BAC RP11-517B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171562 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aggagtttcagtcagacaac 103 |||||||||||||||||||| Sbjct: 15989 aggagtttcagtcagacaac 16008
>gb|AC008553.4|AC008553 Homo sapiens chromosome 5 clone CTC-512C13, complete sequence Length = 91172 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 atagagaatcagcagacaaa 189 |||||||||||||||||||| Sbjct: 22247 atagagaatcagcagacaaa 22266
>dbj|AK174016.1| Ciona intestinalis cDNA, clone:ciad017p24, full insert sequence Length = 2511 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgttggagacaagggtgaac 262 |||||||||||||||||||| Sbjct: 382 cgttggagacaagggtgaac 401
>emb|BX640402.2| Chicken DNA sequence from clone WAG-10A12, complete sequence Length = 131863 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ataagtgggagaggcagaag 475 |||||||||||||||||||| Sbjct: 47637 ataagtgggagaggcagaag 47618
>dbj|AK113159.1| Ciona intestinalis cDNA, clone:ciad011e06, full insert sequence Length = 3319 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgttggagacaagggtgaac 262 |||||||||||||||||||| Sbjct: 1266 cgttggagacaagggtgaac 1285
>dbj|AK112318.1| Ciona intestinalis cDNA, clone:ciad019b03, full insert sequence Length = 1586 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgttggagacaagggtgaac 262 |||||||||||||||||||| Sbjct: 1113 cgttggagacaagggtgaac 1132
>emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete sequence Length = 219956 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 agttcagatagagaatcagc 182 |||||||||||||||||||| Sbjct: 152957 agttcagatagagaatcagc 152938 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,183,730 Number of Sequences: 3902068 Number of extensions: 5183730 Number of successful extensions: 102076 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101934 Number of HSP's gapped (non-prelim): 132 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
