ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29g05 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 98.6 bits (244), Expect = 7e-21 Identities = 42/56 (75%), Positives = 50/56 (89%) Frame = +1 Query: 10 LEVGLKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCHV 177 LE GLK+ +K+LSSFDKYKQ+VLLGHLDW+PMHK+ NFWREN+T FEENDFQ+ V Sbjct: 308 LEEGLKDKIKKLSSFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRV 363
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 59.7 bits (143), Expect = 4e-09 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Frame = +1 Query: 4 EXLEVGLKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCH--V 177 E L L+ +++ LSSFD+Y +V G L+WSP+HK FWREN E ++++ V Sbjct: 315 EYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHKSAKFWRENAQRLNEKNYELLRILV 374 Query: 178 PFLNGNIMFVQSKVACF*FGPVLLH 252 L + + VACF G + H Sbjct: 375 HLLETSKDAIILSVACFDIGEYVRH 399
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 55.1 bits (131), Expect = 9e-08 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 22 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCHV 177 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++ + Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKI 393
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 55.1 bits (131), Expect = 9e-08 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 22 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCHV 177 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++ + Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKI 393
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 55.1 bits (131), Expect = 9e-08 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 22 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCHV 177 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++ + Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKI 393
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 54.7 bits (130), Expect = 1e-07 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +1 Query: 4 EXLEVGLKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCH--V 177 E L L+ +++ LSSFD+Y +V G L+WSP+HK FWREN E ++ V Sbjct: 323 EFLNERLQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLV 382 Query: 178 PFLNGNIMFVQSKVACF*FGPVLLH 252 L + V VAC+ G + H Sbjct: 383 HLLEKSHDPVVLAVACYDVGEYVRH 407
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 54.3 bits (129), Expect = 2e-07 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 22 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCHV 177 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++ + Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENPARLNEKNYELLKI 393
>VATH2_CAEEL (Q22494) Probable vacuolar ATP synthase subunit H 2 (EC 3.6.3.14)| (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) Length = 470 Score = 53.9 bits (128), Expect = 2e-07 Identities = 21/45 (46%), Positives = 29/45 (64%) Frame = +1 Query: 43 LSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQVCHV 177 LSS+D+Y +V G L WSP+HK FWREN + F + F+V + Sbjct: 336 LSSYDEYYSEVRSGRLQWSPVHKSEKFWRENASKFNDKQFEVVKI 380
>VATH_SCHPO (O14265) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 450 Score = 47.8 bits (112), Expect = 1e-05 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = +1 Query: 22 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDF 162 L E+ K LS+FD YK ++ G L WSP H+ +FW +N E+++ Sbjct: 321 LDESSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNY 367
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 45.8 bits (107), Expect = 6e-05 Identities = 20/49 (40%), Positives = 30/49 (61%) Frame = +1 Query: 10 LEVGLKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEEN 156 L+ LK+ ++ L+SFD+Y+ ++ G L WSP HK FW EN +N Sbjct: 318 LQTELKKVVQVLTSFDEYENELRQGSLHWSPAHKCEVFWNENAHRLNDN 366
>VATH_YEAST (P41807) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 478 Score = 42.4 bits (98), Expect = 6e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +1 Query: 22 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQV 168 L+ + L+SFD+Y ++ L WSP H D FW +NI F+++++++ Sbjct: 346 LENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKI 394
>MAGG1_MOUSE (Q9CPR8) Melanoma-associated antigen G1 (MAGE-G1 antigen)| (Necdin-like protein 2) Length = 279 Score = 30.8 bits (68), Expect = 1.9 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 174 MTYLEIIFLKVSDILSPEIWVFVHWRPIKMAKKHLLF 64 M L +IF+K + I E+W F+ + KKHL+F Sbjct: 154 MIVLGLIFMKGNTITETEVWDFLRRLGVYPTKKHLIF 190
>YHP6_SCHPO (Q9USP7) Protein C902.06 in chromosome II| Length = 397 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 203 LYNPKWPVFNLVRFSYTEANFAVAELFGAEFICREKIG--SKATNSWLAKQLKNL 361 LY+P WP + ++N A+ E A+F+ + + S A N+ + ++L+NL Sbjct: 79 LYSPSWPSLADANVNSMKSNNAIQEHKAAKFVSEKSLEKVSTADNNLVLQELENL 133
>ILVC_BUCBP (Q89A20) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 491 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Frame = +1 Query: 22 LKENLKRLSS--FDKYKQQVLLGH------LDWSPMHKDPNFWRENITNFEENDFQVCHV 177 L +LK++ S F K+ +L G+ LDW K WR +I N + H+ Sbjct: 289 LSNDLKKILSPIFKKHMDDILSGYYSKNMMLDWKNDDKQLKIWRRSIQNTSFEQCSISHI 348 Query: 178 PFL 186 L Sbjct: 349 TLL 351
>VRK1_HUMAN (Q99986) Serine/threonine-protein kinase VRK1 (EC 2.7.11.1)| (Vaccinia-related kinase 1) Length = 396 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 70 QVLLGHLDWSPMHKDPNFWRENITNFEEN 156 Q L GHL W KDP + R++ + EN Sbjct: 253 QWLTGHLPWEDNLKDPKYVRDSKIRYREN 281
>MAGG1_HUMAN (Q96MG7) Melanoma-associated antigen G1 (MAGE-G1 antigen)| (Necdin-like protein 2) (Hepatocellular carcinoma-associated protein 4) Length = 304 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 174 MTYLEIIFLKVSDILSPEIWVFVHWRPIKMAKKHLLF 64 M L +IF+K + I E W F+ + KKHL+F Sbjct: 180 MIVLGLIFMKGNTIKETEAWDFLRRLGVYPTKKHLIF 216
>T111_SCHPO (Q09813) Putative transcription initiation factor TFIID 111 kDa| subunit (TBP-associated factor 111 kDa) (TAFII-111) Length = 979 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -2 Query: 450 GLDQDTIYLSSIFILNNMHSRQKVNRTNYSRFF 352 GLD +T++ ++ + N ++ VN+TN S FF Sbjct: 265 GLDLNTVFTTNDWEKNIIYDESDVNKTNQSSFF 297
>PDE7B_MOUSE (Q9QXQ1) cAMP-specific 3',5'-cyclic phosphodiesterase 7B (EC| 3.1.4.17) Length = 446 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 1 TEXLEVGLKENLKRLSSFDKY--KQQVLLGHLDWSPMH 108 T E+G K+ +KRL SF +Y ++L G + +P+H Sbjct: 58 THSGEIGTKKKVKRLLSFQRYFHASRLLRGIIPQAPLH 95
>MAGB4_HUMAN (O15481) Melanoma-associated antigen B4 (MAGE-B4 antigen)| Length = 346 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 174 MTYLEIIFLKVSDILSPEIWVFVHWRPIKMAKKHLLF 64 M L +IFL + EIW F++ I K+HL+F Sbjct: 202 MPLLSVIFLNGNCAREEEIWEFLNMLGIYDGKRHLIF 238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,847,366 Number of Sequences: 219361 Number of extensions: 1163252 Number of successful extensions: 2764 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2729 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2764 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
