ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags29g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT019196.1| Zea mays clone Contig868.F mRNA sequence 168 1e-38
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
3dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
4gb|AY108648.1| Zea mays PCO090155 mRNA sequence 161 3e-36
5ref|NM_185755.2| Oryza sativa (japonica cultivar-group), mRNA 159 1e-35
6dbj|AK104331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
7dbj|AK067714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
8gb|BT018553.1| Zea mays clone EL01N0439D12.d mRNA sequence 155 2e-34
9gb|AC148241.21| Medicago truncatula clone mth2-14m21, complete s... 86 1e-13
10emb|AJ438592.1|MCR438592 Mesembryanthemum crystallinum mRNA for ... 86 1e-13
11emb|AJ698924.1| Populus deltoides x Populus maximowiczii partial... 80 7e-12
12gb|AY225129.1| Suaeda maritima subsp. salsa putative vacuolar AT... 60 7e-06
13emb|AL356013.1|ATF4M19 Arabidopsis thaliana DNA chromosome 3, BA... 58 3e-05
14ref|NM_114072.2| Arabidopsis thaliana ATP binding / hydrogen-tra... 50 0.007
15gb|AY091685.1| Arabidopsis thaliana AT3g42050/F4M19_10 mRNA, com... 50 0.007
16gb|AY037176.1| Arabidopsis thaliana AT3g42050/F4M19_10 mRNA, com... 50 0.007
17emb|BX823850.1|CNS0A6JD Arabidopsis thaliana Full-length cDNA Co... 50 0.007
18gb|U46779.1|CPU46779 Cavia porcellus granulocyte-macrophage stim... 44 0.41
19emb|BX823221.1|CNS0A6OK Arabidopsis thaliana Full-length cDNA Co... 42 1.6
20dbj|AB111925.2| Oryzias latipes gene, complete cds 42 1.6
21dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
23gb|AC136426.2| Homo sapiens chromosome 5 clone CTD-2008N14, comp... 42 1.6
24gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 40 6.4
25gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome... 40 6.4
26gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.4
27gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 6.4
28gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 40 6.4
29emb|CR407546.16| Zebrafish DNA sequence from clone CH211-276E3 i... 40 6.4
30gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosom... 40 6.4
31ref|XM_661012.1| Cryptosporidium hominis TU502 hypothetical prot... 40 6.4
32gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete s... 40 6.4
33emb|AL359740.24| Human DNA sequence from clone RP13-204A15 on ch... 40 6.4
34emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, B... 40 6.4
35gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, c... 40 6.4
36gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 6.4
37gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, com... 40 6.4
38emb|BX322617.9| Zebrafish DNA sequence from clone DKEY-33D4, com... 40 6.4
39emb|AL845306.9| Zebrafish DNA sequence from clone DKEY-217M5 in ... 40 6.4
40emb|AL352977.4|CNS05TBW Human chromosome 14 DNA sequence BAC R-6... 40 6.4
41gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, co... 40 6.4
42dbj|AB057421.1| Staphylococcus aureus IS256, ORF5, ORF6, etd, OR... 40 6.4
43emb|AL356015.3|CNS05TD5 Human chromosome 14 DNA sequence BAC C-3... 40 6.4 
>gb|BT019196.1| Zea mays clone Contig868.F mRNA sequence
          Length = 944

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                       
Query: 9   actagaagtgggtctcaaagagaacctcaagaggttgagctcatttgataagtacaaaca 68
           |||||||||||| |||||||| |||||||||| |||||| || |||||||||||||||||
Sbjct: 275 actagaagtgggactcaaagaaaacctcaagaagttgagttcctttgataagtacaaaca 334

                                                                       
Query: 69  gcaagtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcg 128
           |||||| |||||||| ||||| || |||||||||||||||||||| |||| |||||||||
Sbjct: 335 gcaagttcttcttggtcatctggactggtctccaatgcacaaagatccaagtttctggcg 394

                                                
Query: 129 agagaatatcactaactttgaggaaaatgatttccag 165
            ||||| || |  || ||||| |||||||||||||||
Sbjct: 395 tgagaacattaacaattttgaagaaaatgatttccag 431
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Plus

                                                                            
Query: 22       ctcaaagagaacctcaagaggttgagctcatttgataagtacaaacagcaagtgcttctt 81
                |||||||| ||||| |||| |||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 21767555 ctcaaagacaaccttaagaagttgagttcatttgagaagtacaagcaacaagttcttctt 21767614

                                                                            
Query: 82       ggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagagaatatcact 141
                ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| || | |
Sbjct: 21767615 ggccatcttgactggtctccaatgcacaaagacccaagtttctggcgcgagaacattaat 21767674

                                             
Query: 142      aactttgaggaaaatgatttccaggtatg 170
                || ||||| ||||||||||||||||||||
Sbjct: 21767675 aattttgaagaaaatgatttccaggtatg 21767703



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 321      aagcaacaaacagttggttagccaa 345
                |||||| ||||||||||||||||||
Sbjct: 23193031 aagcaataaacagttggttagccaa 23193007
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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Plus

                                                                         
Query: 22    ctcaaagagaacctcaagaggttgagctcatttgataagtacaaacagcaagtgcttctt 81
             |||||||| ||||| |||| |||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 84738 ctcaaagacaaccttaagaagttgagttcatttgagaagtacaagcaacaagttcttctt 84797

                                                                         
Query: 82    ggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagagaatatcact 141
             ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| || | |
Sbjct: 84798 ggccatcttgactggtctccaatgcacaaagacccaagtttctggcgcgagaacattaat 84857

                                          
Query: 142   aactttgaggaaaatgatttccaggtatg 170
             || ||||| ||||||||||||||||||||
Sbjct: 84858 aattttgaagaaaatgatttccaggtatg 84886
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>gb|AY108648.1| Zea mays PCO090155 mRNA sequence
          Length = 1795

 Score =  161 bits (81), Expect = 3e-36
 Identities = 138/157 (87%)
 Strand = Plus / Plus

                                                                        
Query: 9    actagaagtgggtctcaaagagaacctcaagaggttgagctcatttgataagtacaaaca 68
            |||||| ||||| |||||||| |||||||||| |||||| || |||||||||||||||||
Sbjct: 1099 actagaggtgggactcaaagaaaacctcaagaagttgagttcctttgataagtacaaaca 1158

                                                                        
Query: 69   gcaagtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcg 128
            |||||| |||||||| |||||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 1159 gcaagttcttcttggtcatcttgactggtctccaatgcacaaagatccaagtttctggcg 1218

                                                 
Query: 129  agagaatatcactaactttgaggaaaatgatttccag 165
             ||||| || |  || ||||| || ||||||||||||
Sbjct: 1219 tgagaacattaacaattttgaagagaatgatttccag 1255
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>ref|NM_185755.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1694

 Score =  159 bits (80), Expect = 1e-35
 Identities = 128/144 (88%)
 Strand = Plus / Plus

                                                                        
Query: 22   ctcaaagagaacctcaagaggttgagctcatttgataagtacaaacagcaagtgcttctt 81
            |||||||| ||||| |||| |||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 1080 ctcaaagacaaccttaagaagttgagttcatttgagaagtacaagcaacaagttcttctt 1139

                                                                        
Query: 82   ggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagagaatatcact 141
            ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| || | |
Sbjct: 1140 ggccatcttgactggtctccaatgcacaaagacccaagtttctggcgcgagaacattaat 1199

                                    
Query: 142  aactttgaggaaaatgatttccag 165
            || ||||| |||||||||||||||
Sbjct: 1200 aattttgaagaaaatgatttccag 1223
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>dbj|AK104331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D11, full
            insert sequence
          Length = 1694

 Score =  159 bits (80), Expect = 1e-35
 Identities = 128/144 (88%)
 Strand = Plus / Plus

                                                                        
Query: 22   ctcaaagagaacctcaagaggttgagctcatttgataagtacaaacagcaagtgcttctt 81
            |||||||| ||||| |||| |||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 1080 ctcaaagacaaccttaagaagttgagttcatttgagaagtacaagcaacaagttcttctt 1139

                                                                        
Query: 82   ggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagagaatatcact 141
            ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| || | |
Sbjct: 1140 ggccatcttgactggtctccaatgcacaaagacccaagtttctggcgcgagaacattaat 1199

                                    
Query: 142  aactttgaggaaaatgatttccag 165
            || ||||| |||||||||||||||
Sbjct: 1200 aattttgaagaaaatgatttccag 1223
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>dbj|AK067714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120K21, full
            insert sequence
          Length = 1764

 Score =  159 bits (80), Expect = 1e-35
 Identities = 128/144 (88%)
 Strand = Plus / Plus

                                                                        
Query: 22   ctcaaagagaacctcaagaggttgagctcatttgataagtacaaacagcaagtgcttctt 81
            |||||||| ||||| |||| |||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 1081 ctcaaagacaaccttaagaagttgagttcatttgagaagtacaagcaacaagttcttctt 1140

                                                                        
Query: 82   ggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagagaatatcact 141
            ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| || | |
Sbjct: 1141 ggccatcttgactggtctccaatgcacaaagacccaagtttctggcgcgagaacattaat 1200

                                    
Query: 142  aactttgaggaaaatgatttccag 165
            || ||||| |||||||||||||||
Sbjct: 1201 aattttgaagaaaatgatttccag 1224
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>gb|BT018553.1| Zea mays clone EL01N0439D12.d mRNA sequence
          Length = 1360

 Score =  155 bits (78), Expect = 2e-34
 Identities = 140/161 (86%)
 Strand = Plus / Plus

                                                                       
Query: 5   aatnactagaagtgggtctcaaagagaacctcaagaggttgagctcatttgataagtaca 64
           ||| |||||||||||| |||||||| |||||||||| |||| | |  |||||||||||||
Sbjct: 684 aatcactagaagtgggactcaaagaaaacctcaagaagttgcgtttctttgataagtaca 743

                                                                       
Query: 65  aacagcaagtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttct 124
           |||||||||| |||||||| ||||| || |||||||||||||||||||| |||| |||||
Sbjct: 744 aacagcaagttcttcttggtcatctggactggtctccaatgcacaaagatccaagtttct 803

                                                    
Query: 125 ggcgagagaatatcactaactttgaggaaaatgatttccag 165
           |||| ||||| || |  || ||||| |||||||||||||||
Sbjct: 804 ggcgtgagaacattaacaattttgaagaaaatgatttccag 844
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>gb|AC148241.21| Medicago truncatula clone mth2-14m21, complete sequence
          Length = 119208

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 102/119 (85%), Gaps = 2/119 (1%)
 Strand = Plus / Plus

                                                                         
Query: 52    tttgataagtacaaacagcaagtgcttcttggccatcttgattggtctccaatgcacaaa 111
             |||||||||||||| ||  |||| ||||||||| |||| ||||||||||| |||||||||
Sbjct: 66152 tttgataagtacaagcaagaagttcttcttggcaatctggattggtctcccatgcacaaa 66211

                                                                        
Query: 112   ga-cccaaatttctggcgagagaatatcactaactttgaggaaaatgatttccaggtat 169
             || |||| |||| |||||||| ||||| || || ||||| ||  |||||||||||||||
Sbjct: 66212 gatcccatattt-tggcgagaaaatataaccaattttgaagagcatgatttccaggtat 66269
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>emb|AJ438592.1|MCR438592 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase
            subunit H (vha-H gene)
          Length = 1735

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 106/127 (83%)
 Strand = Plus / Plus

                                                                        
Query: 35   tcaagaggttgagctcatttgataagtacaaacagcaagtgcttcttggccatcttgatt 94
            |||||| | |||| |||||||| || || |||||| |||| |||||||||||||||||||
Sbjct: 1153 tcaagaagctgagttcatttgacaaatataaacaggaagttcttcttggccatcttgatt 1212

                                                                        
Query: 95   ggtctccaatgcacaaagacccaaatttctggcgagagaatatcactaactttgaggaaa 154
            |||| ||| ||||||||||  |    |||||||| || || || || |||||||||||||
Sbjct: 1213 ggtccccagtgcacaaagatactttcttctggcgtgataacattaccaactttgaggaaa 1272

                   
Query: 155  atgattt 161
            |||||||
Sbjct: 1273 atgattt 1279
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>emb|AJ698924.1| Populus deltoides x Populus maximowiczii partial mRNA for putative
           vacuolar ATPase subunit H
          Length = 392

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                       
Query: 82  ggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagagaatatcact 141
           |||||||||||||||||||| ||||||||||| ||   ||||||||| || ||||| |||
Sbjct: 21  ggccatcttgattggtctcctatgcacaaagatcctgctttctggcgtgaaaatataact 80

                                   
Query: 142 aactttgaggaaaatgatttccag 165
           || ||||| || ||||||||||||
Sbjct: 81  aattttgaagagaatgatttccag 104
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>gb|AY225129.1| Suaeda maritima subsp. salsa putative vacuolar ATPase subunit H
            protein mRNA, complete cds
          Length = 1969

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 124  tggcgagagaatatcactaactttgaggaaaatgatttccag 165
            ||||| ||||||||||  ||||||||||||||||||||||||
Sbjct: 1208 tggcgggagaatatcaagaactttgaggaaaatgatttccag 1249
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>emb|AL356013.1|ATF4M19 Arabidopsis thaliana DNA chromosome 3, BAC clone F4M19
          Length = 94342

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                         
Query: 73    gtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagag 132
             ||||| |||||||||||||| |||   ||||||||||| ||  | ||||||||||| |||
Sbjct: 19357 gtgctccttggccatcttgactggaacccaatgcacaaggagaccaatttctggcgtgag 19298

                                                  
Query: 133   aatatcactaactttgaggaaaatgatttccaggtat 169
             ||| ||||   ||||||||| || || ||||||||||
Sbjct: 19297 aatgtcacatgctttgaggagaacgacttccaggtat 19261
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>ref|NM_114072.2| Arabidopsis thaliana ATP binding / hydrogen-transporting ATP
            synthase, rotational mechanism / hydrogen-transporting
            ATPase, rotational mechanism AT3G42050 mRNA, complete cds
          Length = 1884

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                        
Query: 73   gtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagag 132
            ||||| |||||||||||||| |||   ||||||||||| ||  | ||||||||||| |||
Sbjct: 1193 gtgctccttggccatcttgactggaacccaatgcacaaggagaccaatttctggcgtgag 1252

                                             
Query: 133  aatatcactaactttgaggaaaatgatttccag 165
            ||| ||||   ||||||||| || || ||||||
Sbjct: 1253 aatgtcacatgctttgaggagaacgacttccag 1285
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>gb|AY091685.1| Arabidopsis thaliana AT3g42050/F4M19_10 mRNA, complete cds
          Length = 1326

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                        
Query: 73   gtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagag 132
            ||||| |||||||||||||| |||   ||||||||||| ||  | ||||||||||| |||
Sbjct: 985  gtgctccttggccatcttgactggaacccaatgcacaaggagaccaatttctggcgtgag 1044

                                             
Query: 133  aatatcactaactttgaggaaaatgatttccag 165
            ||| ||||   ||||||||| || || ||||||
Sbjct: 1045 aatgtcacatgctttgaggagaacgacttccag 1077
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>gb|AY037176.1| Arabidopsis thaliana AT3g42050/F4M19_10 mRNA, complete cds
          Length = 1704

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                        
Query: 73   gtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagag 132
            ||||| |||||||||||||| |||   ||||||||||| ||  | ||||||||||| |||
Sbjct: 1169 gtgctccttggccatcttgactggaacccaatgcacaaggagaccaatttctggcgtgag 1228

                                             
Query: 133  aatatcactaactttgaggaaaatgatttccag 165
            ||| ||||   ||||||||| || || ||||||
Sbjct: 1229 aatgtcacatgctttgaggagaacgacttccag 1261
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>emb|BX823850.1|CNS0A6JD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS83ZB01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 754

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                       
Query: 73  gtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagag 132
           ||||| |||||||||||||| |||   ||||||||||| ||  | ||||||||||| |||
Sbjct: 173 gtgctccttggccatcttgactggaacccaatgcacaaggagaccaatttctggcgtgag 232

                                            
Query: 133 aatatcactaactttgaggaaaatgatttccag 165
           ||| ||||   ||||||||| || || ||||||
Sbjct: 233 aatgtcacatgctttgaggagaacgacttccag 265
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>gb|U46779.1|CPU46779 Cavia porcellus granulocyte-macrophage stimulation factor mRNA,
           partial cds
          Length = 420

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 23  tcaaagagaacctcaagaggtt 44
           ||||||||||||||||||||||
Sbjct: 371 tcaaagagaacctcaagaggtt 392
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>emb|BX823221.1|CNS0A6OK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS12ZE12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1696

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                        
Query: 73   gtgcttcttggccatcttgattggtctccaatgcacaaagacccaaatttctggcgagag 132
            ||||| |||||||||||||| |||   ||||||||||| ||  | ||| ||||||| |||
Sbjct: 1119 gtgctccttggccatcttgactggaacccaatgcacaaggagaccaatctctggcgtgag 1178

                                             
Query: 133  aatatcactaactttgaggaaaatgatttccag 165
            ||| ||||   ||||||||| || || ||||||
Sbjct: 1179 aatgtcacatgctttgaggagaacgacttccag 1211
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>dbj|AB111925.2| Oryzias latipes gene, complete cds
          Length = 70179

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   ttagccaaacagttaaaaaac 358
             |||||||||||||||||||||
Sbjct: 27968 ttagccaaacagttaaaaaac 27988
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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 321   aagcaacaaacagttggttagccaa 345
             |||||| ||||||||||||||||||
Sbjct: 55945 aagcaataaacagttggttagccaa 55921
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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1699_E05
          Length = 170666

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 321    aagcaacaaacagttggttagccaa 345
              |||||| ||||||||||||||||||
Sbjct: 137215 aagcaataaacagttggttagccaa 137191
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>gb|AC136426.2| Homo sapiens chromosome 5 clone CTD-2008N14, complete sequence
          Length = 121099

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   tttgaggaaaatgatttccag 165
             |||||||||||||||||||||
Sbjct: 54258 tttgaggaaaatgatttccag 54238
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>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     cagcaagtgcttcttggcca 86
              ||||||||||||||||||||
Sbjct: 200369 cagcaagtgcttcttggcca 200388
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>gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome 13, complete sequence
          Length = 157332

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   atattgttaagtataaatat 417
             ||||||||||||||||||||
Sbjct: 90637 atattgttaagtataaatat 90656
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 262     ttttgcagttgctgaactgttcgg 285
               |||||||||||||||||| |||||
Sbjct: 3695133 ttttgcagttgctgaactcttcgg 3695110
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>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     cagcaagtgcttcttggcca 86
              ||||||||||||||||||||
Sbjct: 104497 cagcaagtgcttcttggcca 104516
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>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     cagcaagtgcttcttggcca 86
              ||||||||||||||||||||
Sbjct: 125889 cagcaagtgcttcttggcca 125908
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>emb|CR407546.16| Zebrafish DNA sequence from clone CH211-276E3 in linkage group 17,
             complete sequence
          Length = 103614

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   atatgctagataagtagata 433
             ||||||||||||||||||||
Sbjct: 22623 atatgctagataagtagata 22642
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>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence
          Length = 187246

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     cagcaagtgcttcttggcca 86
              ||||||||||||||||||||
Sbjct: 135190 cagcaagtgcttcttggcca 135209
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>ref|XM_661012.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30460)
            partial mRNA
          Length = 5364

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  ttgaatggaaatataatgtt 203
            ||||||||||||||||||||
Sbjct: 2687 ttgaatggaaatataatgtt 2668
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>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
          Length = 124394

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   ttttttgaatggaaatataa 199
             ||||||||||||||||||||
Sbjct: 71975 ttttttgaatggaaatataa 71956
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>emb|AL359740.24| Human DNA sequence from clone RP13-204A15 on chromosome X Contains a
             Np95-like ring finger protein (NIRF) pseudogene, a DEAD/H
             (Asp-Glu-Ala-Asp/His) box polypeptide pseudogene, a
             makorin ring finger protein, 1 (MKRN1) pseudogene and two
             CpG islands, complete sequence
          Length = 98104

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   gtatgtcatgtccctttttt 185
             ||||||||||||||||||||
Sbjct: 48540 gtatgtcatgtccctttttt 48521
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>emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12
          Length = 106730

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   atattgttaagtataaatat 417
             ||||||||||||||||||||
Sbjct: 26113 atattgttaagtataaatat 26094
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>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gtgaaaaaataggctcaaaa 322
              ||||||||||||||||||||
Sbjct: 115538 gtgaaaaaataggctcaaaa 115557
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>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gtgaaaaaataggctcaaaa 322
              ||||||||||||||||||||
Sbjct: 175290 gtgaaaaaataggctcaaaa 175271
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>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   gtgaaaaaataggctcaaaa 322
             ||||||||||||||||||||
Sbjct: 39784 gtgaaaaaataggctcaaaa 39765
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>emb|BX322617.9| Zebrafish DNA sequence from clone DKEY-33D4, complete sequence
          Length = 206855

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   atatgctagataagtagata 433
             ||||||||||||||||||||
Sbjct: 97134 atatgctagataagtagata 97115
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>emb|AL845306.9| Zebrafish DNA sequence from clone DKEY-217M5 in linkage group 20,
             complete sequence
          Length = 186675

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   ttatttgtcgtgaaaaaata 313
             ||||||||||||||||||||
Sbjct: 87408 ttatttgtcgtgaaaaaata 87389
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>emb|AL352977.4|CNS05TBW Human chromosome 14 DNA sequence BAC R-662J14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173820

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    atattgttaagtataaatat 417
              ||||||||||||||||||||
Sbjct: 101625 atattgttaagtataaatat 101644
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>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence
          Length = 197546

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     caagtgcttcttggccatct 89
              ||||||||||||||||||||
Sbjct: 105045 caagtgcttcttggccatct 105026
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>dbj|AB057421.1| Staphylococcus aureus IS256, ORF5, ORF6, etd, ORF2, edin-B, ORF7,
            ORF8, ORF9, ORF10, ORF11 genes, complete cds
          Length = 14849

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 409  tataaatatgctagataagtagat 432
            ||||||||||||||||| ||||||
Sbjct: 9182 tataaatatgctagatatgtagat 9159
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>emb|AL356015.3|CNS05TD5 Human chromosome 14 DNA sequence BAC C-3006G17 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 146602

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   ccttttttgaatggaaatat 197
             ||||||||||||||||||||
Sbjct: 47989 ccttttttgaatggaaatat 47970


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,098,662
Number of Sequences: 3902068
Number of extensions: 5098662
Number of successful extensions: 103990
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103883
Number of HSP's gapped (non-prelim): 107
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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