>EMB8_PICGL (Q40863) Embryogenesis-associated protein EMB8|
          Length = 457

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
 Frame = +1

Query: 70  INKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCTREAI 249
           + K+RS+R+FD   T +   +++V  YY   SS+  +  V   LLC+ A +DP+     I
Sbjct: 310 VAKARSVRDFDGGLTRVSFGFQSVGDYYSNSSSSLSIKYVQTSLLCIQASNDPIAPSRGI 369

Query: 250 PWDECRANKNIVLATTQNGGHLAFFQGLTA--GKLWWVGAVSEFL 378
           PW++ + N N +L  T NGGHL +  G  A  G  W    V E+L
Sbjct: 370 PWEDIKENPNCLLVVTPNGGHLGWVAGDDAPFGAPWTDPLVMEYL 414

>YP95_YEAST (Q02891) Hypothetical UPF0017 protein YPL095c|
          Length = 456

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 38/107 (35%), Positives = 51/107 (47%)
 Frame = +1

Query: 58  NWEGINKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCT 237
           N E   K   I EFD+  T          TYYR+ SS + + N+ +P L +NA DDPV  
Sbjct: 344 NLEKAEKFTDILEFDNLFTAPSMGLPDGLTYYRKASSINRLPNIKIPTLIINATDDPVTG 403

Query: 238 REAIPWDECRANKNIVLATTQNGGHLAFFQGLTAGKLWWVGAVSEFL 378
              IP+ + R N  ++L  T  GGHLA+         W     +EFL
Sbjct: 404 ENVIPYKQARENPCVLLCETDLGGHLAYLD--NESNSWLTKQAAEFL 448

>YM60_YEAST (Q03649) Hypothetical UPF0017 protein YMR210w|
          Length = 449

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 31/108 (28%), Positives = 59/108 (54%)
 Frame = +1

Query: 70  INKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCTREAI 249
           + K R++R+FD+  T  +  Y+  + YY+  SS   +  +  P + ++A DDP+   + +
Sbjct: 313 LKKIRTVRQFDNLLTGPMFGYKNAEEYYKNASSYKRIPGIRTPFIALHAQDDPIVGGD-L 371

Query: 250 PWDECRANKNIVLATTQNGGHLAFFQGLTAGKLWWVGAVSEFLCALHD 393
           P D+ ++N   +L  T  GGH+ +F+   +G+ W+   +  FL   HD
Sbjct: 372 PIDQIKSNPYTLLLETSTGGHVGWFKD-RSGRRWYAEPLCRFLKIFHD 418

>YHET_ECOLI (P45524) Hypothetical UPF0017 protein yheT|
          Length = 340

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +1

Query: 58  NWEGINKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCT 237
           N   +   R IREFD   T  +  Y     YYR+CS+   +  ++ P L ++A DDP   
Sbjct: 225 NLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMD 284

Query: 238 REAIPWDECRANKNIVLATTQNGGHLAFFQG-LTAGKLWWVGAVSEFL 378
            + IP  E      +    T++GGH+ F  G L   ++W    + ++L
Sbjct: 285 HQVIPKPE-SLPPQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWL 331

>YB27_YEAST (P38295) Hypothetical UPF0017 protein YBR177c|
          Length = 451

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 32/98 (32%), Positives = 45/98 (45%)
 Frame = +1

Query: 82  RSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCTREAIPWDE 261
           +S REFD   T     +     YY+  SS + V  + VP L +N+ DDPV   +  P+  
Sbjct: 348 KSTREFDEVYTAPALGFPNAMEYYKAASSINRVDTIRVPTLVINSRDDPVVGPDQ-PYSI 406

Query: 262 CRANKNIVLATTQNGGHLAFFQGLTAGKLWWVGAVSEF 375
              N  I+   T  GGHLA+         W   A++EF
Sbjct: 407 VEKNPRILYCRTDLGGHLAYLD--KDNNSWATKAIAEF 442

>YYC5_CAEEL (Q18610) Hypothetical UPF0017 protein C44C1.5 in chromosome X|
          Length = 375

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 22/99 (22%), Positives = 51/99 (51%)
 Frame = +1

Query: 31  HQPILARLANWEGINKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCV 210
           ++ +   + +++ + +  ++R FD      +  +++ D YYR+ + A+ V  + +P + +
Sbjct: 251 YRELFKDMVDFDEVCRCNTVRGFDRSFVIPMYGFKSCDDYYRQATLATKVDKIKIPCVTL 310

Query: 211 NALDDPVCTREAIPWDECRANKNIVLATTQNGGHLAFFQ 327
           N++DD     E IP  +   +  +    T +GGH AF +
Sbjct: 311 NSVDDYFSPVECIPTLDIMESDYVCGIITNHGGHTAFME 349

>LBH2_HUMAN (P08910) Abhydrolase domain-containing protein 2 (Protein PHPS1-2)|
          Length = 425

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 85  SIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCTRE--AIPWD 258
           S+ + D +       Y ++  YY   S   ++  + VPL+ VNA DDP+       IP  
Sbjct: 299 SLMQIDDNVMRKFHGYNSLKEYYEEESCMRYLHRIYVPLMLVNAADDPLVHESLLTIPKS 358

Query: 259 ECRANKNIVLATTQNGGHLAFFQG 330
                +N++     +GGHL FF+G
Sbjct: 359 LSEKRENVMFVLPLHGGHLGFFEG 382

>A23D_DROME (Q24093) UPF0017 protein CG3488|
          Length = 398

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 58  NWEGINKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPVCT 237
           N   I  + ++ E D   T  V  + +    Y+  SS  +   +  P++ +NA DDP+  
Sbjct: 273 NEREIIAAATLPELDEAYTRRVYNFPSTQELYKWSSSLFYFDTIKKPMIFINAKDDPLIP 332

Query: 238 REAI-PWDE-CRANKNIVLATTQNGGHLAFFQG 330
            + + P  E     +N       +GGHL F++G
Sbjct: 333 EDLLHPIKEYATTRQNTAYVEVAHGGHLGFYEG 365

>Y264_SYNY3 (P73879) Hypothetical UPF0017 protein slr0264|
          Length = 369

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 64  EGINKSRSIREFDHHATCIVAKYETVDTYYRRCSSASFVGNVSVPLLCVNALDDPV---C 234
           + I ++ +I  FDH+         +V+ YY   S+   +  +  P L + A DDP+    
Sbjct: 250 QAIERANTIWGFDHNLVIDRLGLASVEDYYEVSSALPLLSKIVKPTLLLYAADDPMFHPA 309

Query: 235 TREAIPWDECRANKNIVLATTQNGGHLAF 321
             E +P  + +    + L  T  GGH+ +
Sbjct: 310 IVEELPGLQNQLT-GVDLQITPKGGHVGY 337

>CN105_HUMAN (Q9NVL8) Protein C14orf105|
          Length = 296

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +1

Query: 361 AVSEFLCALHDSSYMHRQKAEDHVLHSSLESS--IDKSPYVSILGDGMIAPVINEGPPSS 534
           A  E   +LH  + +++Q   DH    +L+S+   D    +++L D     ++N GP +S
Sbjct: 166 AQMELKKSLHGEARINKQSPRDHKAKKTLQSTPRNDDHDLLTMLPD----EILNRGPGNS 221

Query: 535 QITDDLKPNAVIN 573
           + T+ LK  AV N
Sbjct: 222 KDTEFLKHQAVNN 234

>COQ2_CAEEL (Q8I7J4) Para-hydroxybenzoate--polyprenyltransferase, mitochondrial|
           precursor (EC 2.5.1.-) (PHB:polyprenyltransferase)
          Length = 356

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = +1

Query: 283 VLATTQNGGHL----AFFQGLTAGKLWWVGAVSEFLCALHDSSYMHRQKAED---HVLHS 441
           VL  T N G L    A    L++   +W+ A +     ++D+ Y H+ KA+D    V  +
Sbjct: 199 VLGLTFNWGALLGWCALKGDLSSSAPFWMYAAALQWTLIYDTIYAHQDKADDIMIGVKST 258

Query: 442 SLESSIDKSPYVSILGDGMIAPVINEGPPSSQ 537
           +L    D   ++S  G G +A +   G  S Q
Sbjct: 259 ALRLGADTKKWLSAFGVGTVASLTACGIASDQ 290

>CNGC8_ARATH (Q9FXH6) Putative cyclic nucleotide-gated ion channel 8 (Cyclic|
           nucleotide- and calmodulin-regulated ion channel 8)
          Length = 753

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -1

Query: 248 IASLVQTGSSKAFTQSKGTDTLPTKLALLH 159
           +  L Q    K    SKGTD LPTK ALLH
Sbjct: 208 VLPLPQIAVWKFLHGSKGTDVLPTKQALLH 237

>LCBA2_AERHY (Q848R7) Capsular polysaccharide phosphotransferase lcbA (EC|
           2.7.-.-) (Stealth protein lcbA)
          Length = 364

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = -1

Query: 257 SQGIASLVQTGSSKAFTQSKGTDTLPTKLALL 162
           S GIASL  +  S A  Q KGTDT PT  A L
Sbjct: 195 SNGIASLFMSNKSLAIMQKKGTDT-PTLSASL 225

>INAR2_BOVIN (Q95141) Interferon-alpha/beta receptor beta chain precursor|
           (IFN-alpha-REC) (Type I interferon receptor) (IFN-R)
           (Interferon alpha/beta receptor-2)
          Length = 530

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
 Frame = +1

Query: 163 SSASFVGNVSVPLLCVNALDD----------PVCTREAIPWDECRANKNIVLATTQNGGH 312
           S    V NV++  +CV AL+D          P C  E +  ++    ++ VL  ++ G  
Sbjct: 426 SEGRIVFNVNLNSVCVRALEDDKDSEVTLMSPSCPEETVELEDLNETESSVLVASEEGTQ 485

Query: 313 LAF 321
           L F
Sbjct: 486 LPF 488

>ZIC1_XENLA (O73689) Zinc finger protein ZIC 1 (Zinc finger protein of the|
           cerebellum 1) (ZIC-related-1 protein) (ZIC-R1)
           (ODD-paired-like)
          Length = 443

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 373 FLCALHDSSYMHRQKAEDHV-LHSSLESSIDKSPYVSILGDGMIAPVINEGPPSSQITDD 549
           +LC + D SY H      H+ +H +       SP  S   +    P I      +Q T  
Sbjct: 358 YLCKMCDKSYTHPSSLRKHMKVHEASSQGSQPSPAASSGYESSTPPTIVSPSAENQSTSS 417

Query: 550 LKPNA 564
           L P++
Sbjct: 418 LSPSS 422

>ZN619_HUMAN (Q8N2I2) Zinc finger protein 619|
          Length = 560

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -2

Query: 262 IHPKELPLLCKR-----GHPKHLHKARELTHYQQN*RCCTGGSRYPQ-SHILQQCKWHGG 101
           +H  E P  CK       +   L + +++   ++   C   G  + Q SH+LQ  K HGG
Sbjct: 209 VHTNEKPYTCKECGKTFRYNSKLSRHQKIHTGEKPYSCEECGQAFSQNSHLLQHQKLHGG 268

Query: 100 QTP 92
           Q P
Sbjct: 269 QRP 271

>ZIC1_HUMAN (Q15915) Zinc finger protein ZIC 1 (Zinc finger protein of the|
           cerebellum 1)
          Length = 447

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = +1

Query: 373 FLCALHDSSYMHRQKAEDHV-LHSSLESSIDKSPYVSILGDGMIAPVINEGPPSSQITDD 549
           +LC + D SY H      H+ +H S       SP  S   +    P I      +  T  
Sbjct: 362 YLCKMCDKSYTHPSSVRKHMKVHESSSQGSQPSPAASSGYESSTPPTIVSPSTDNPTTSS 421

Query: 550 LKPNA 564
           L P++
Sbjct: 422 LSPSS 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,996,807
Number of Sequences: 219361
Number of extensions: 2207696
Number of successful extensions: 6149
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6146
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)