ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29f02 |
|---|---|
| Clone Library Name | barley_pub |
>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)| Length = 488 Score = 35.8 bits (81), Expect = 0.10 Identities = 25/103 (24%), Positives = 47/103 (45%) Frame = +1 Query: 31 PGQLHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEA 210 PG+L +L E +Q +++F+EL + EQQ L +E + + + E A Sbjct: 179 PGELKRLVESRRQQILKEFEELHRRLDEEQQTLLSRLEEEEQDIL-------QRLRENAA 231 Query: 211 DKDATKQDIAKDVHEYCTKAIGTSLKFIRSYNTRLTYLDKVKT 339 ++D+A E K + + + ++ + L +KVKT Sbjct: 232 HLGDRRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKT 274
>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)| (Testis-abundant finger protein) Length = 488 Score = 35.8 bits (81), Expect = 0.10 Identities = 25/103 (24%), Positives = 47/103 (45%) Frame = +1 Query: 31 PGQLHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEA 210 PG+L +L E +Q +++F+EL + EQQ L +E + + + E A Sbjct: 179 PGELKRLVESRRQQILKEFEELHRRLDEEQQTLLSRLEEEEQDIL-------QRLRENAA 231 Query: 211 DKDATKQDIAKDVHEYCTKAIGTSLKFIRSYNTRLTYLDKVKT 339 ++D+A E K + + + ++ + L +KVKT Sbjct: 232 HLGDRRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKT 274
>TOLA_HAEIN (P44678) Protein tolA| Length = 372 Score = 33.5 bits (75), Expect = 0.52 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = +1 Query: 7 PQQLVDLSPGQLHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKE-ARDKVYHILGSA 183 P+ +V+ P + ++ E+ H+QEVQ+ +ELK Q ++Q +K +E AR + A Sbjct: 80 PEPVVEEKPPEPNQ-EEIKHQQEVQRQEELKRQQEQQRQQEIKKQQEQARQEALEKQKQA 138 Query: 184 QEMIMEAEADKDATKQD 234 +E + A+ K D Sbjct: 139 EEAKAKQAAEAAKLKAD 155 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/70 (27%), Positives = 35/70 (50%) Frame = +1 Query: 37 QLHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEADK 216 ++ + EL +QE Q+ QE+K Q +Q L+ K+A + A ++ +AEA + Sbjct: 101 EVQRQEELKRQQEQQRQQEIKKQQEQARQEALEKQKQAEEAKAKQAAEAAKLKADAEAKR 160 Query: 217 DATKQDIAKD 246 A A++ Sbjct: 161 LAAAAKQAEE 170
>SMC2_HUMAN (O95347) Structural maintenance of chromosome 2-like 1 protein| (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog) Length = 1197 Score = 32.7 bits (73), Expect = 0.88 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Frame = +1 Query: 46 KLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEADKDAT 225 KL + + ++ ++ LK ++ E + LKN KE + K + + AEA+++ Sbjct: 732 KLQQSSYHKQQEELDALK-KTIEESEETLKNTKEIQRKAEEKYEVLENKMKNAEAERERE 790 Query: 226 KQDIAKDVHEYCTKAIGTSLKF---IRSYNTRLTYLDKVKTHSDDLIKQLKCLDPATQQK 396 +D K + TKA +S K + L+++K +QL+ ++ A + Sbjct: 791 LKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQLEAVNEAIKSY 850 Query: 397 EAQM 408 E+Q+ Sbjct: 851 ESQI 854
>VE1_HPV38 (Q80909) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 604 Score = 31.2 bits (69), Expect = 2.6 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Frame = +1 Query: 28 SPGQLHKLAELIHRQEVQKFQELKFQSYAEQQNYLK-NAKEARDKVYHILGSAQEMIMEA 204 SP + +L+ + + + K + + EQ + L+ + EA D S QE+ + A Sbjct: 84 SPKAVQELSPRLQSMNISSEHKSKRRLFVEQDSGLELSLNEAED-------STQELEVPA 136 Query: 205 EADKDATKQDIAKDVHEYCTKAIGTSLKFIRSYNTRLTYLDKVK 336 A A + DI +GT +RS N+R T L K K Sbjct: 137 SAPAPAAEGDIG----------LGTVRDLLRSSNSRATLLSKFK 170
>GRPE_CANGA (Q6FPH2) GrpE protein homolog, mitochondrial precursor| Length = 231 Score = 31.2 bits (69), Expect = 2.6 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Frame = +1 Query: 10 QQLVDLSPGQLHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQE 189 ++ +L L +A+ + QEV K K +SYA Q + K+ E+ D H LG+ +E Sbjct: 84 KEAAELKDRLLRSVADFRNLQEVTKKDVEKAKSYA-LQKFAKDLLESVDNFGHALGAFKE 142 Query: 190 MIME--AEADKDATKQDIAKDVHEYCTKAIG 276 +E E T + +DV E K G Sbjct: 143 EDLEKSKEISDLYTGVKMTRDVFEKTLKKYG 173
>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin complex| subunit psm1) (Chromosome segregation protein smc1) Length = 1233 Score = 30.8 bits (68), Expect = 3.4 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 40 LHKLAELIHRQEVQKF-QELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEADK 216 L K+ E I E++K Q+ K +Y+E + + E L S + I+EA AD+ Sbjct: 447 LAKINEKIESLELEKHDQQKKRLTYSELFHKTQELNEE-------LQSCLQKILEASADR 499 Query: 217 DATKQDIAKDVHEYCTKAIGTSLK 288 + +KQD K Y K I +K Sbjct: 500 NESKQDAKKREALYALKRIYPEVK 523
>GATA_THETN (Q8RC40) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 488 Score = 30.8 bits (68), Expect = 3.4 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 40 LHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIME-AEADK 216 +H+L EL+H++EV + K +YL+ KE K+ ++ +E +E A+ Sbjct: 8 VHELKELLHKREVSAQEVTK--------SYLERIKEVEPKIDALVTITEEFALERAKVAD 59 Query: 217 DATKQDIAKDV 249 + K AKD+ Sbjct: 60 EMIKNGEAKDL 70
>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14| (CARD-containing MAGUK protein 2) (Carma 2) Length = 1004 Score = 30.4 bits (67), Expect = 4.4 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 26/110 (23%) Frame = +1 Query: 10 QQLVDLSPGQLHKLAELIH----------RQEVQKFQE-----LKFQS-------YAEQQ 123 +Q +D + G +L E IH RQ Q ++E L+FQ Y E+ Sbjct: 288 EQSLDEARGSRQELVERIHSLRERAVAAERQREQYWEEKEQTLLQFQKSKMACQLYREKV 347 Query: 124 NYLK----NAKEARDKVYHILGSAQEMIMEAEADKDATKQDIAKDVHEYC 261 N L+ ++ RD+ Y SAQ I ++ +KD+ ++ + + + C Sbjct: 348 NALQAQVCELQKERDQAYSARDSAQREISQSLVEKDSLRRQVFELTDQVC 397
>YHV9_YEAST (P38854) Hypothetical 56.3 kDa protein in REC104-SOL3 intergenic| region Length = 504 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +1 Query: 1 TMPQQLVDLSPGQLHKLA--ELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARD 156 T+P VD+S L LA EL + QK ++LK Q+ E+QNY + A+E + Sbjct: 169 TIPTNGVDVS-ALLQSLATKELELLECKQKIEDLKKQTQHEEQNYTRRARELHE 221
>VIGLN_CHICK (P81021) Vigilin| Length = 1270 Score = 30.0 bits (66), Expect = 5.7 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = +1 Query: 64 HRQEVQKFQELKFQSYAEQQ----NYLKNAKEARDKVYHILGSAQEMIMEAEADKDATKQ 231 H +Q F + +S A+ Q Y KNA+ ARD + I+G ++M+ E Sbjct: 1084 HEVNIQ-FPDKDDESQAQDQITITGYEKNAEAARDAIMKIVGELEQMVSE---------- 1132 Query: 232 DIAKDVHEYCTKAIGTSLKFIR 297 D+ D H + IG K IR Sbjct: 1133 DVTLD-HRVHARIIGARGKAIR 1153
>SMC2_XENLA (P50533) Structural maintenance of chromosome 2| (Chromosome-associated protein E) (Chromosome assembly protein XCAP-E) Length = 1203 Score = 30.0 bits (66), Expect = 5.7 Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Frame = +1 Query: 46 KLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEADKDAT 225 KL + + ++ ++ LK Q+ E + LKN KE + K + + AEA+++ Sbjct: 733 KLQQSSYHKQQEELDSLK-QTIEESEETLKNTKEVQKKAEEKFKVLEHKMKNAEAERERE 791 Query: 226 KQDIAKDVHEYCTKAIGTSLKF---IRSYNTRLTYLDKVKTHSDDLIKQLKCLDPATQQK 396 ++ + + KA ++ K + + + L+++K +Q++ +D A + Sbjct: 792 LKEAQQKLDTAKKKADASNKKMKEKQQEVDALVLELEELKREQTTYKQQIETVDEAMKAY 851 Query: 397 EAQ 405 + Q Sbjct: 852 QEQ 854
>DNAK_CHLAB (Q8GH79) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 659 Score = 30.0 bits (66), Expect = 5.7 Identities = 24/90 (26%), Positives = 40/90 (44%) Frame = +1 Query: 133 KNAKEARDKVYHILGSAQEMIMEAEADKDATKQDIAKDVHEYCTKAIGTSLKFIRSYNTR 312 K +EA D + A MI AE D +++ E TK I ++ +RS Sbjct: 525 KKRREASD----VRNEADSMIFRAEK----AISDYKENIPESLTKEIEERIEKVRSALKE 576 Query: 313 LTYLDKVKTHSDDLIKQLKCLDPATQQKEA 402 +K+K SD+L + ++ + A Q + A Sbjct: 577 DAPTEKIKEASDELSRHMQKIGEAMQSQSA 606
>SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like 1 protein| (Chromosome-associated protein E) (XCAP-E homolog) (FGF-inducible protein 16) Length = 1191 Score = 29.6 bits (65), Expect = 7.5 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Frame = +1 Query: 46 KLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEADKDAT 225 KL + + ++ ++ LK ++ E + LK+ KE + K + + + AEA+++ Sbjct: 732 KLQQSSYHKQQEELDALK-KTIEESEETLKSTKEIQKKAEEKYEALENKMKNAEAEREKE 790 Query: 226 KQDIAKDVHEYCTKAIGTSLKF---IRSYNTRLTYLDKVKTHSDDLIKQLKCLDPATQQK 396 +D K + TKA +S K + L+++K +QL ++ A + Sbjct: 791 LKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHASNEQQLDAVNEAIKAY 850 Query: 397 EAQM 408 E Q+ Sbjct: 851 EGQI 854
>RPOB_OENHO (Q9MTM5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1072 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Frame = +1 Query: 88 QELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEA----EADKDATKQDI 237 QE++FQ + E + ++ + RD VY +L + E+ + A ++ +D KQ I Sbjct: 47 QEIEFQLFVETYHLVEPLIKERDAVYELLTYSSELYISAGLIWKSSRDMQKQTI 100
>TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger protein 23)| (Testis-abundant finger protein) Length = 518 Score = 29.3 bits (64), Expect = 9.8 Identities = 23/90 (25%), Positives = 40/90 (44%) Frame = +1 Query: 31 PGQLHKLAELIHRQEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHILGSAQEMIMEAEA 210 PG+L +L E +Q +++F+EL + EQQ L +E + L + Sbjct: 179 PGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHL----G 234 Query: 211 DKDATKQDIAKDVHEYCTKAIGTSLKFIRS 300 DK +A +V C ++ LK ++S Sbjct: 235 DKRRDLAHLAAEVEGKCLQSGFEMLKDVKS 264
>ABA1_ASCSU (Q06811) ABA-1 polyprotein precursor (Body fluid allergen 1)| (Allergen Asc s 1) (Nematode polyprotein allergen ABA-1) (NPA ABA-1) [Contains: ABA-1B1 repeat unit; ABA-1A4 repeat unit; ABA-1A3 repeat unit; ABA-1A2 repeat unit; ABA-1A1 repeat uni Length = 1365 Score = 29.3 bits (64), Expect = 9.8 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 12/92 (13%) Frame = +1 Query: 130 LKNAKEARDKVYHILGSAQEMIMEAEADKDATKQDIAKDVHEY---CTKAIG-TSLKFIR 297 L+N KEA + + ++M+ E +K K VHEY C K G T+L+ R Sbjct: 77 LRNMKEAGADIQELQQKVEKMLSEVTDEKQKEK------VHEYGPACKKIFGATTLQHHR 130 Query: 298 SYNTRLTYLDKVKTH--------SDDLIKQLK 369 T + TH D+L+K K Sbjct: 131 RRRHHFTLESSLDTHLKWLSQEQKDELLKMKK 162
>UBP9_YEAST (P39967) Ubiquitin carboxyl-terminal hydrolase 9 (EC 3.1.2.15)| (Ubiquitin thioesterase 9) (Ubiquitin-specific-processing protease 9) (Deubiquitinating enzyme 9) Length = 754 Score = 29.3 bits (64), Expect = 9.8 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 401 LKCLALEAGRYKKAALEDAEKFEHFIPNQFSEWLKGN--KIKFQDLVADDTAKPGLRGAF 574 +K L E + +DA +F +F+ N FSE+++ N +++F D++ + F Sbjct: 418 VKILKKENVLFNTMMQQDAHEFLNFLLNDFSEYIQRNNPRMRFGPQKTDNSNDNFITDLF 477 Query: 575 K-TLDDTQKLKAYDNI 619 K TL + K DNI Sbjct: 478 KGTLTNRIKCLTCDNI 493
>UVRC_BACCR (Q817L9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 590 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = +1 Query: 70 QEVQKFQELKFQSYAEQQNYLKNAKEARDKVYHI--LGSAQEMIMEAEADKD 219 +EV+ E+K +E+ + + AKE RD++ HI + Q+MIM D+D Sbjct: 192 KEVRSELEIKMYEASEKLEF-ERAKELRDQIAHIDAIMEKQKMIMSDLVDRD 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,411,652 Number of Sequences: 219361 Number of extensions: 1445897 Number of successful extensions: 4563 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4559 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
