ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags28p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATK_CRAMN (Q8WJQ9) Maturase K (Intron maturase) 30 2.3
2ROB2_AGRRH (P49409) Protein-tyrosine phosphatase rolB (EC 3.1.3.... 30 2.3
3MATK_VAUCA (Q8WJN0) Maturase K (Intron maturase) 30 2.3
4MATK_PRUPE (Q8WJP1) Maturase K (Intron maturase) 29 3.0
5MATK_PRUDU (Q8WJP3) Maturase K (Intron maturase) 28 5.1
6ROB1_AGRRH (P20402) Protein-tyrosine phosphatase rolB (EC 3.1.3.... 28 6.6
7MATK_PRULA (Q8WJP2) Maturase K (Intron maturase) 28 6.6
8MATK_SPICA (Q8WJN2) Maturase K (Intron maturase) 28 8.7

>MATK_CRAMN (Q8WJQ9) Maturase K (Intron maturase)|
          Length = 506

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 58  LFWKRINFFDDRRFKIRILK*---EFSITLLWFQKPQLKSHAKPQLKSV 195
           +F++RI+F++ +++ + + K    +F   +LWF K     + + Q KS+
Sbjct: 237 IFFERIHFYEKKKYPVPVEKVFVNDFPAAILWFFKDPFMHYVRYQGKSI 285



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>ROB2_AGRRH (P49409) Protein-tyrosine phosphatase rolB (EC 3.1.3.48) (ROL B|
           protein)
          Length = 262

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 34  VHEFDPRRLF--WKRINFFDDRRFKIRILK*EFSITLLWFQK 153
           +  F PR L   W ++N FD+ +F   I    +S TL+ FQK
Sbjct: 8   LQRFQPRDLTKAWNQLNLFDEIQFAFLIYSQVYSKTLMDFQK 49



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>MATK_VAUCA (Q8WJN0) Maturase K (Intron maturase)|
          Length = 504

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 58  LFWKRINFFDDRRFKIR-ILK*EFSITLLWFQKPQLKSHAKPQLKSV 195
           +F++RI+F++ +++ +  +   +F   +LWF K     + + Q KS+
Sbjct: 237 IFFERIHFYEKKKYPVEEVFVNDFPAAILWFFKDPFMHYVRYQGKSI 283



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>MATK_PRUPE (Q8WJP1) Maturase K (Intron maturase)|
          Length = 506

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 58  LFWKRINFFDDRRFKI-RILK*EFSITLLWFQKPQLKSHAKPQLKSV 195
           +F++RI+F++  ++ + ++   +F  ++LWF K     + + Q KS+
Sbjct: 237 IFFERIHFYEKIKYPVEKVFANDFPASILWFFKDPFMHYVRYQGKSI 283



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>MATK_PRUDU (Q8WJP3) Maturase K (Intron maturase)|
          Length = 506

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 58  LFWKRINFFDDRRFKIR-ILK*EFSITLLWFQKPQLKSHAKPQLKSV 195
           +F++RI+F++  ++ +  +   +F  ++LWF K     + + Q KS+
Sbjct: 237 IFFERIHFYEKIKYPVEEVFANDFPASILWFFKDPFMHYVRYQGKSI 283



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>ROB1_AGRRH (P20402) Protein-tyrosine phosphatase rolB (EC 3.1.3.48) (ROL B|
           protein)
          Length = 259

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 64  WKRINFFDDRRFKIRILK*EFSITLLWFQK 153
           W +IN F+  RF   I   ++S  LL FQK
Sbjct: 20  WSQINLFEGIRFAFAIYSRDYSKPLLHFQK 49



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>MATK_PRULA (Q8WJP2) Maturase K (Intron maturase)|
          Length = 500

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 58  LFWKRINFFDDRRFKIR-ILK*EFSITLLWFQKPQLKSHAKPQLKSV 195
           +F++RI+F++  ++ +  +   +F   +LWF K     + + Q KS+
Sbjct: 233 IFFERIHFYEKIKYPVEEVFANDFPAAILWFFKDPFMHYVRYQGKSI 279



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>MATK_SPICA (Q8WJN2) Maturase K (Intron maturase)|
          Length = 502

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/46 (23%), Positives = 28/46 (60%)
 Frame = +1

Query: 58  LFWKRINFFDDRRFKIRILK*EFSITLLWFQKPQLKSHAKPQLKSV 195
           +F+++I+F++  ++ +     +F++ +LWF K     + + Q KS+
Sbjct: 239 IFFEQIHFYEKIKYPVEN---DFTVAILWFFKDPFMHYVRYQGKSI 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,011,506
Number of Sequences: 219361
Number of extensions: 316862
Number of successful extensions: 766
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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