| Clone Name | bags28p24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 89.7 bits (45), Expect = 3e-15 Identities = 134/163 (82%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 9 atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65 |||||||||||||||||||||||| ||||| |||| ||||||||| || ||||| | Sbjct: 146354 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 146413 Query: 66 gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125 | | | ||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||| Sbjct: 146414 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 146473 Query: 126 tagcatcactctgttatggttccagaagccacagctcaagtct 168 | |||||| | |||| |||||||||| ||||||| ||||| Sbjct: 146474 ttgcatcaaacaattatacttccagaagctacagctctagtct 146516
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 89.7 bits (45), Expect = 3e-15 Identities = 134/163 (82%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 9 atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65 |||||||||||||||||||||||| ||||| |||| ||||||||| || ||||| | Sbjct: 15736673 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 15736732 Query: 66 gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125 | | | ||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||| Sbjct: 15736733 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 15736792 Query: 126 tagcatcactctgttatggttccagaagccacagctcaagtct 168 | |||||| | |||| |||||||||| ||||||| ||||| Sbjct: 15736793 ttgcatcaaacaattatacttccagaagctacagctctagtct 15736835
>dbj|AK106730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H09, full insert sequence Length = 1999 Score = 89.7 bits (45), Expect = 3e-15 Identities = 134/163 (82%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 9 atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65 |||||||||||||||||||||||| ||||| |||| ||||||||| || ||||| | Sbjct: 958 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 1017 Query: 66 gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125 | | | ||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||| Sbjct: 1018 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 1077 Query: 126 tagcatcactctgttatggttccagaagccacagctcaagtct 168 | |||||| | |||| |||||||||| ||||||| ||||| Sbjct: 1078 ttgcatcaaacaattatacttccagaagctacagctctagtct 1120
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 89.7 bits (45), Expect = 3e-15 Identities = 134/163 (82%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 9 atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65 |||||||||||||||||||||||| ||||| |||| ||||||||| || ||||| | Sbjct: 15824050 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 15824109 Query: 66 gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125 | | | ||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||| Sbjct: 15824110 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 15824169 Query: 126 tagcatcactctgttatggttccagaagccacagctcaagtct 168 | |||||| | |||| |||||||||| ||||||| ||||| Sbjct: 15824170 ttgcatcaaacaattatacttccagaagctacagctctagtct 15824212
>emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM domains containing protein 1 and KIAA0851 gene Length = 87434 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttcgatccaagaagattattt 63 ||||||||||||||||||||| Sbjct: 42483 ttcgatccaagaagattattt 42463
>gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, complete sequence Length = 176741 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttcgatccaagaagattattt 63 ||||||||||||||||||||| Sbjct: 48609 ttcgatccaagaagattattt 48589
>emb|AL590304.2| Human DNA sequence from clone RP11-252B20 on chromosome 13 Contains a spermatogenesis associated 2 (SPATA2) pseudogene, complete sequence Length = 116874 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 atggttccagaagccacagc 160 |||||||||||||||||||| Sbjct: 87918 atggttccagaagccacagc 87899
>emb|AL158831.15| Human DNA sequence from clone RP11-564A4 on chromosome 9, complete sequence Length = 162700 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tggtagtttggatggtgcgt 35 |||||||||||||||||||| Sbjct: 12884 tggtagtttggatggtgcgt 12903
>emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chromosome 2, complete sequence Length = 192010 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cttctttgatgacagacgct 97 |||||||||||||||||||| Sbjct: 163168 cttctttgatgacagacgct 163149
>ref|NM_191467.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 atcaacttctttgatgaca 91 ||||||||||||||||||| Sbjct: 1108 atcaacttctttgatgaca 1126
>gb|AC116409.9| Mus musculus chromosome 3, clone RP24-337P23, complete sequence Length = 162232 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 141 atggttccagaagccacagctca 163 ||||||||||||| ||||||||| Sbjct: 4970 atggttccagaagtcacagctca 4992
>emb|AL136171.17| Human DNA sequence from clone RP4-584N17 on chromosome 1q42.2-43 Contains part of the DISC1 gene for disrupted in schizophrenia 1, complete sequence Length = 133968 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 agaatttagcatcactctg 138 ||||||||||||||||||| Sbjct: 101172 agaatttagcatcactctg 101190
>emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 on chromosome Xq21.2-22.3 Contains a thiopurine S-methyltransferase (TPMT) pseudogene, a stress-induced-phosphoprotein 1 (STIP1) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex (NDUFA5) pseudogene and the 5' end of the CHM gene for choroideremia (Rab escort protein 1), complete sequence Length = 115039 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 aagaagattattttggaag 69 ||||||||||||||||||| Sbjct: 34785 aagaagattattttggaag 34803
>emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chromosome 1p21.3-22.3 Contains ESTs, STSs, GSSs and a CpG island. Contains part of a novel gene for a protein similar to rat transporter-like protein (CTL1) and the CNN3 gene for two isoforms of acidic calponin 3, complete sequence Length = 106277 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 153 gccacagctcaagtctcat 171 ||||||||||||||||||| Sbjct: 4343 gccacagctcaagtctcat 4325
>gb|AC079061.8| Homo sapiens chromosome 8, clone RP11-422N16, complete sequence Length = 202392 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 165 gtctcatgcaaagccacag 183 ||||||||||||||||||| Sbjct: 61367 gtctcatgcaaagccacag 61349
>emb|BX663511.8| Zebrafish DNA sequence from clone RP71-20D11 in linkage group 8, complete sequence Length = 78433 Score = 38.2 bits (19), Expect = 9.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 101 aaatcaggattctcaaatgagaattta 127 |||| |||||||| ||||||||||||| Sbjct: 65977 aaatgaggattcttaaatgagaattta 66003
>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence Length = 232850 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 attctcaaatgagaattta 127 ||||||||||||||||||| Sbjct: 134227 attctcaaatgagaattta 134209
>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence Length = 172252 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 accactgcatgcaaatggt 19 ||||||||||||||||||| Sbjct: 46125 accactgcatgcaaatggt 46107
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 atcaacttctttgatgaca 91 ||||||||||||||||||| Sbjct: 32840434 atcaacttctttgatgaca 32840452
>gb|AF222981.1|AF222981 Homo sapiens 1 DISC2 gene, complete sequence Length = 15002 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 agaatttagcatcactctg 138 ||||||||||||||||||| Sbjct: 1385 agaatttagcatcactctg 1403
>gb|AF222987.1|AF222987 Homo sapiens DISC1 protein (DISC1) gene, partial cds and DISC2 gene, partial sequence Length = 33376 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 agaatttagcatcactctg 138 ||||||||||||||||||| Sbjct: 31816 agaatttagcatcactctg 31798
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413G02 Length = 155633 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 atcaacttctttgatgaca 91 ||||||||||||||||||| Sbjct: 61839 atcaacttctttgatgaca 61857
>dbj|AK068921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001D01, full insert sequence Length = 2518 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 atcaacttctttgatgaca 91 ||||||||||||||||||| Sbjct: 2037 atcaacttctttgatgaca 2055
>emb|AL445885.1|CNS07EES Human chromosome 14 DNA sequence BAC C-2506J14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170892 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 atccaagaagattattttg 65 ||||||||||||||||||| Sbjct: 87678 atccaagaagattattttg 87696
>gb|AY449462.1| Oikopleura dioica clone BACOIKO006 3xn11, complete sequence Length = 166506 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 tcaaaatcaggattctcaa 116 ||||||||||||||||||| Sbjct: 118151 tcaaaatcaggattctcaa 118133
>gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, complete sequence Length = 212218 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 145 ttccagaagccacagctca 163 ||||||||||||||||||| Sbjct: 150676 ttccagaagccacagctca 150658
>emb|AL928812.11| Mouse DNA sequence from clone RP23-321B23 on chromosome 2, complete sequence Length = 199019 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 141 atggttccagaagccacagctca 163 |||||||||||||||| |||||| Sbjct: 125991 atggttccagaagccaaagctca 125969
>gb|AC135083.4| Mus musculus BAC clone RP24-238A21 from 14, complete sequence Length = 179469 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 141 atggttccagaagccacagctca 163 |||||||||||||||| |||||| Sbjct: 54280 atggttccagaagccagagctca 54302
>gb|AC146617.3| Mus musculus BAC clone RP23-14M15 from 14, complete sequence Length = 221015 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 141 atggttccagaagccacagctca 163 |||||||||||||||| |||||| Sbjct: 24521 atggttccagaagccagagctca 24543
>dbj|AB217317.1| Equus caballus DNA, microsatellite TKY3374 Length = 540 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 gatccaagaagattattttggaa 68 ||||||||| ||||||||||||| Sbjct: 1 gatccaagaggattattttggaa 23
>gb|AC115017.11| Mus musculus chromosome 3, clone RP24-220A11, complete sequence Length = 167811 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 141 atggttccagaagccacagctca 163 ||||||||||||| ||||||||| Sbjct: 138813 atggttccagaagtcacagctca 138835
>dbj|AP004292.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1590E11 Length = 158466 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 gtctcatgcaaagccacag 183 ||||||||||||||||||| Sbjct: 124137 gtctcatgcaaagccacag 124155
>dbj|AP004281.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1157A1 Length = 138830 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 gtctcatgcaaagccacag 183 ||||||||||||||||||| Sbjct: 24798 gtctcatgcaaagccacag 24816 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,945,671 Number of Sequences: 3902068 Number of extensions: 1945671 Number of successful extensions: 137031 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136841 Number of HSP's gapped (non-prelim): 190 length of query: 195 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 173 effective length of database: 17,147,199,772 effective search space: 2966465560556 effective search space used: 2966465560556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)