ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags28p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome... 90 3e-15
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 90 3e-15
3dbj|AK106730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 3e-15
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 90 3e-15
5emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM... 42 0.62
6gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, comp... 42 0.62
7emb|AL590304.2| Human DNA sequence from clone RP11-252B20 on chr... 40 2.4
8emb|AL158831.15| Human DNA sequence from clone RP11-564A4 on chr... 40 2.4
9emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chr... 40 2.4
10ref|NM_191467.1| Oryza sativa (japonica cultivar-group), predic... 38 9.7
11gb|AC116409.9| Mus musculus chromosome 3, clone RP24-337P23, com... 38 9.7
12emb|AL136171.17| Human DNA sequence from clone RP4-584N17 on chr... 38 9.7
13emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 o... 38 9.7
14emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chro... 38 9.7
15gb|AC079061.8| Homo sapiens chromosome 8, clone RP11-422N16, com... 38 9.7
16emb|BX663511.8| Zebrafish DNA sequence from clone RP71-20D11 in ... 38 9.7
17gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, comp... 38 9.7
18emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet... 38 9.7
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
20gb|AF222981.1|AF222981 Homo sapiens 1 DISC2 gene, complete sequence 38 9.7
21gb|AF222987.1|AF222987 Homo sapiens DISC1 protein (DISC1) gene, ... 38 9.7
22dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
23dbj|AK068921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.7
24emb|AL445885.1|CNS07EES Human chromosome 14 DNA sequence BAC C-2... 38 9.7
25gb|AY449462.1| Oikopleura dioica clone BACOIKO006 3xn11, complet... 38 9.7
26gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, co... 38 9.7
27emb|AL928812.11| Mouse DNA sequence from clone RP23-321B23 on ch... 38 9.7
28gb|AC135083.4| Mus musculus BAC clone RP24-238A21 from 14, compl... 38 9.7
29gb|AC146617.3| Mus musculus BAC clone RP23-14M15 from 14, comple... 38 9.7
30dbj|AB217317.1| Equus caballus DNA, microsatellite TKY3374 38 9.7
31gb|AC115017.11| Mus musculus chromosome 3, clone RP24-220A11, co... 38 9.7
32dbj|AP004292.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 9.7
33dbj|AP004281.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 9.7

>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09,
              complete sequence
          Length = 171861

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 134/163 (82%), Gaps = 3/163 (1%)
 Strand = Plus / Plus

                                                                          
Query: 9      atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65
              ||||||||||||||||||||||||  |||||  |||| ||||||||| ||   ||||| |
Sbjct: 146354 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 146413

                                                                          
Query: 66     gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125
               | | | ||||||||| |||||  |||| ||||| ||||||||||| |||||||||||||
Sbjct: 146414 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 146473

                                                         
Query: 126    tagcatcactctgttatggttccagaagccacagctcaagtct 168
              | ||||||  |  ||||  |||||||||| ||||||| |||||
Sbjct: 146474 ttgcatcaaacaattatacttccagaagctacagctctagtct 146516



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 134/163 (82%), Gaps = 3/163 (1%)
 Strand = Plus / Plus

                                                                            
Query: 9        atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65
                ||||||||||||||||||||||||  |||||  |||| ||||||||| ||   ||||| |
Sbjct: 15736673 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 15736732

                                                                            
Query: 66       gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125
                 | | | ||||||||| |||||  |||| ||||| ||||||||||| |||||||||||||
Sbjct: 15736733 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 15736792

                                                           
Query: 126      tagcatcactctgttatggttccagaagccacagctcaagtct 168
                | ||||||  |  ||||  |||||||||| ||||||| |||||
Sbjct: 15736793 ttgcatcaaacaattatacttccagaagctacagctctagtct 15736835



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>dbj|AK106730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H09, full
            insert sequence
          Length = 1999

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 134/163 (82%), Gaps = 3/163 (1%)
 Strand = Plus / Plus

                                                                        
Query: 9    atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65
            ||||||||||||||||||||||||  |||||  |||| ||||||||| ||   ||||| |
Sbjct: 958  atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 1017

                                                                        
Query: 66   gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125
             | | | ||||||||| |||||  |||| ||||| ||||||||||| |||||||||||||
Sbjct: 1018 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 1077

                                                       
Query: 126  tagcatcactctgttatggttccagaagccacagctcaagtct 168
            | ||||||  |  ||||  |||||||||| ||||||| |||||
Sbjct: 1078 ttgcatcaaacaattatacttccagaagctacagctctagtct 1120



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 134/163 (82%), Gaps = 3/163 (1%)
 Strand = Plus / Plus

                                                                            
Query: 9        atgcaaatggtagtttggatggtgcgtgcatgagttcgatccaagaagat---tattttg 65
                ||||||||||||||||||||||||  |||||  |||| ||||||||| ||   ||||| |
Sbjct: 15824050 atgcaaatggtagtttggatggtggttgcattggttcaatccaagaaaatgaatatttag 15824109

                                                                            
Query: 66       gaagcgcatcaacttctttgatgacagacgcttcaaaatcaggattctcaaatgagaatt 125
                 | | | ||||||||| |||||  |||| ||||| ||||||||||| |||||||||||||
Sbjct: 15824110 aacgagaatcaacttccttgattgcagatgcttcgaaatcaggattatcaaatgagaatt 15824169

                                                           
Query: 126      tagcatcactctgttatggttccagaagccacagctcaagtct 168
                | ||||||  |  ||||  |||||||||| ||||||| |||||
Sbjct: 15824170 ttgcatcaaacaattatacttccagaagctacagctctagtct 15824212



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>emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM domains containing protein 1
             and KIAA0851 gene
          Length = 87434

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    ttcgatccaagaagattattt 63
             |||||||||||||||||||||
Sbjct: 42483 ttcgatccaagaagattattt 42463



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>gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, complete sequence
          Length = 176741

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    ttcgatccaagaagattattt 63
             |||||||||||||||||||||
Sbjct: 48609 ttcgatccaagaagattattt 48589



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>emb|AL590304.2| Human DNA sequence from clone RP11-252B20 on chromosome 13 Contains a
             spermatogenesis associated 2 (SPATA2) pseudogene, complete
             sequence
          Length = 116874

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   atggttccagaagccacagc 160
             ||||||||||||||||||||
Sbjct: 87918 atggttccagaagccacagc 87899



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>emb|AL158831.15| Human DNA sequence from clone RP11-564A4 on chromosome 9, complete
             sequence
          Length = 162700

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tggtagtttggatggtgcgt 35
             ||||||||||||||||||||
Sbjct: 12884 tggtagtttggatggtgcgt 12903



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>emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chromosome 2, complete
              sequence
          Length = 192010

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     cttctttgatgacagacgct 97
              ||||||||||||||||||||
Sbjct: 163168 cttctttgatgacagacgct 163149



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>ref|NM_191467.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1389

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 73   atcaacttctttgatgaca 91
            |||||||||||||||||||
Sbjct: 1108 atcaacttctttgatgaca 1126



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>gb|AC116409.9| Mus musculus chromosome 3, clone RP24-337P23, complete sequence
          Length = 162232

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 141  atggttccagaagccacagctca 163
            ||||||||||||| |||||||||
Sbjct: 4970 atggttccagaagtcacagctca 4992



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>emb|AL136171.17| Human DNA sequence from clone RP4-584N17 on chromosome 1q42.2-43 Contains
              part of the DISC1 gene for disrupted in schizophrenia 1,
              complete sequence
          Length = 133968

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    agaatttagcatcactctg 138
              |||||||||||||||||||
Sbjct: 101172 agaatttagcatcactctg 101190



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>emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 on chromosome Xq21.2-22.3
             Contains a thiopurine S-methyltransferase (TPMT)
             pseudogene, a stress-induced-phosphoprotein 1 (STIP1)
             pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha
             subcomplex (NDUFA5) pseudogene and the 5' end of the CHM
             gene for choroideremia (Rab escort protein 1), complete
             sequence
          Length = 115039

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    aagaagattattttggaag 69
             |||||||||||||||||||
Sbjct: 34785 aagaagattattttggaag 34803



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>emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chromosome 1p21.3-22.3
            Contains ESTs, STSs, GSSs and a CpG island. Contains part
            of a novel gene for a protein similar to rat
            transporter-like protein (CTL1) and the CNN3 gene for two
            isoforms of acidic calponin 3, complete sequence
          Length = 106277

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 153  gccacagctcaagtctcat 171
            |||||||||||||||||||
Sbjct: 4343 gccacagctcaagtctcat 4325



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>gb|AC079061.8| Homo sapiens chromosome 8, clone RP11-422N16, complete sequence
          Length = 202392

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 165   gtctcatgcaaagccacag 183
             |||||||||||||||||||
Sbjct: 61367 gtctcatgcaaagccacag 61349



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>emb|BX663511.8| Zebrafish DNA sequence from clone RP71-20D11 in linkage group 8,
             complete sequence
          Length = 78433

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 101   aaatcaggattctcaaatgagaattta 127
             |||| |||||||| |||||||||||||
Sbjct: 65977 aaatgaggattcttaaatgagaattta 66003



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>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence
          Length = 232850

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 109    attctcaaatgagaattta 127
              |||||||||||||||||||
Sbjct: 134227 attctcaaatgagaattta 134209



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>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     accactgcatgcaaatggt 19
             |||||||||||||||||||
Sbjct: 46125 accactgcatgcaaatggt 46107



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 73       atcaacttctttgatgaca 91
                |||||||||||||||||||
Sbjct: 32840434 atcaacttctttgatgaca 32840452



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>gb|AF222981.1|AF222981 Homo sapiens 1 DISC2 gene, complete sequence
          Length = 15002

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 120  agaatttagcatcactctg 138
            |||||||||||||||||||
Sbjct: 1385 agaatttagcatcactctg 1403



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>gb|AF222987.1|AF222987 Homo sapiens DISC1 protein (DISC1) gene, partial cds and DISC2 gene,
             partial sequence
          Length = 33376

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 120   agaatttagcatcactctg 138
             |||||||||||||||||||
Sbjct: 31816 agaatttagcatcactctg 31798



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>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    atcaacttctttgatgaca 91
             |||||||||||||||||||
Sbjct: 61839 atcaacttctttgatgaca 61857



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>dbj|AK068921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001D01, full
            insert sequence
          Length = 2518

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 73   atcaacttctttgatgaca 91
            |||||||||||||||||||
Sbjct: 2037 atcaacttctttgatgaca 2055



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>emb|AL445885.1|CNS07EES Human chromosome 14 DNA sequence BAC C-2506J14 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 170892

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    atccaagaagattattttg 65
             |||||||||||||||||||
Sbjct: 87678 atccaagaagattattttg 87696



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>gb|AY449462.1| Oikopleura dioica clone BACOIKO006 3xn11, complete sequence
          Length = 166506

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     tcaaaatcaggattctcaa 116
              |||||||||||||||||||
Sbjct: 118151 tcaaaatcaggattctcaa 118133



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>gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, complete sequence
          Length = 212218

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 145    ttccagaagccacagctca 163
              |||||||||||||||||||
Sbjct: 150676 ttccagaagccacagctca 150658



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>emb|AL928812.11| Mouse DNA sequence from clone RP23-321B23 on chromosome 2, complete
              sequence
          Length = 199019

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 141    atggttccagaagccacagctca 163
              |||||||||||||||| ||||||
Sbjct: 125991 atggttccagaagccaaagctca 125969



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>gb|AC135083.4| Mus musculus BAC clone RP24-238A21 from 14, complete sequence
          Length = 179469

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 141   atggttccagaagccacagctca 163
             |||||||||||||||| ||||||
Sbjct: 54280 atggttccagaagccagagctca 54302



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>gb|AC146617.3| Mus musculus BAC clone RP23-14M15 from 14, complete sequence
          Length = 221015

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 141   atggttccagaagccacagctca 163
             |||||||||||||||| ||||||
Sbjct: 24521 atggttccagaagccagagctca 24543



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>dbj|AB217317.1| Equus caballus DNA, microsatellite TKY3374
          Length = 540

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 46 gatccaagaagattattttggaa 68
          ||||||||| |||||||||||||
Sbjct: 1  gatccaagaggattattttggaa 23



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>gb|AC115017.11| Mus musculus chromosome 3, clone RP24-220A11, complete sequence
          Length = 167811

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 141    atggttccagaagccacagctca 163
              ||||||||||||| |||||||||
Sbjct: 138813 atggttccagaagtcacagctca 138835



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>dbj|AP004292.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1590E11
          Length = 158466

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 165    gtctcatgcaaagccacag 183
              |||||||||||||||||||
Sbjct: 124137 gtctcatgcaaagccacag 124155



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>dbj|AP004281.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1157A1
          Length = 138830

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 165   gtctcatgcaaagccacag 183
             |||||||||||||||||||
Sbjct: 24798 gtctcatgcaaagccacag 24816


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,945,671
Number of Sequences: 3902068
Number of extensions: 1945671
Number of successful extensions: 137031
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136841
Number of HSP's gapped (non-prelim): 190
length of query: 195
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 173
effective length of database: 17,147,199,772
effective search space: 2966465560556
effective search space used: 2966465560556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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