ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags29e21 |
|---|---|
| Clone Library Name | barley_pub |
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 246 bits (628), Expect = 3e-65 Identities = 123/177 (69%), Positives = 141/177 (79%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 LK+FVGNLPF+ DSA LA LFE+AG+VEMVEV+YD++TGRSRGFGFVTM S EEV AA + Sbjct: 87 LKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 QFNGY GR LRVNSGPPP + E SFDS+N++YVGNL+WGVD Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRE----NSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQD 202 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LE LFSEQGKV+DAKV+YDRDSGRSRGFGFVTY SA+EVNNAI +LDGVDL+GR I Sbjct: 203 ALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259 Score = 78.2 bits (191), Expect = 2e-14 Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V+VGNL + VD L LF + G V +VVYDR +GRSRGFGFVT S EEV A+E Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248 Query: 215 FNGYTFQGRPLRVNSGPP-PPRDEF 286 +G GR +RV+ PPR +F Sbjct: 249 LDGVDLNGRAIRVSPAEARPPRRQF 273 Score = 71.2 bits (173), Expect = 2e-12 Identities = 35/77 (45%), Positives = 48/77 (62%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 +F K++VGNL + D++ L LF G V +VIYD+ +GRSRGFGFVT S +EV Sbjct: 82 NFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141 Query: 512 NNAISNLDGVDLDGRQI 562 A +G +LDGR + Sbjct: 142 EAACQQFNGYELDGRAL 158
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 244 bits (624), Expect = 9e-65 Identities = 124/185 (67%), Positives = 144/185 (77%), Gaps = 8/185 (4%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 LK+FVGNLPF VDSAQLA LFE AG+VEMVEV+YD++TGRSRGFGFVTM SV EV AA + Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150 Query: 212 QFNGYTFQGRPLRVNSGPPPP-RDEFAPRTPRAMXXXXXX-------XSFDSANKLYVGN 367 QFNGY GRPLRVN+GPPPP R++ R PR+ S N++YVGN Sbjct: 151 QFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210 Query: 368 LSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 LSWGVD+ LE+LFSEQGKV++A+VIYDRDSGRS+GFGFVTY S+ EV NAI +LDG DL Sbjct: 211 LSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADL 270 Query: 548 DGRQI 562 DGRQI Sbjct: 271 DGRQI 275 Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/77 (49%), Positives = 49/77 (63%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 SF + KL+VGNL + VD++ L LF G V +VIYD+ +GRSRGFGFVT S EV Sbjct: 86 SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEV 145 Query: 512 NNAISNLDGVDLDGRQI 562 A +G +LDGR + Sbjct: 146 EAAAQQFNGYELDGRPL 162 Score = 73.2 bits (178), Expect = 5e-13 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V+VGNL + VD L LF + G V V+YDR +GRS+GFGFVT S +EV A++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 215 FNGYTFQGRPLRVNSGPP-PPRDEF 286 +G GR +RV+ PPR ++ Sbjct: 265 LDGADLDGRQIRVSEAEARPPRRQY 289
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 242 bits (617), Expect = 6e-64 Identities = 122/179 (68%), Positives = 142/179 (79%), Gaps = 2/179 (1%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 LK+FVGNL F+ DSA LA LFE+AG+VEMVEV+YD++TGRSRGFGFVTM S EEV AA + Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXX--SFDSANKLYVGNLSWGVD 385 QFNGY GR LRVNSGPPP + E + + SFDS+N++YVGNL+WGVD Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206 Query: 386 NSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LE LFSEQGKV+DAKV+YDRDSGRSRGFGFVTY SA+EVNNAI +LDGVDL+GR I Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265 Score = 78.2 bits (191), Expect = 2e-14 Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V+VGNL + VD L LF + G V +VVYDR +GRSRGFGFVT S EEV A+E Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254 Query: 215 FNGYTFQGRPLRVNSGPP-PPRDEF 286 +G GR +RV+ PPR +F Sbjct: 255 LDGVDLNGRAIRVSPAEARPPRRQF 279 Score = 70.9 bits (172), Expect = 2e-12 Identities = 35/77 (45%), Positives = 48/77 (62%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 +F K++VGNL + D++ L LF G V +VIYD+ +GRSRGFGFVT S +EV Sbjct: 82 NFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141 Query: 512 NNAISNLDGVDLDGRQI 562 A +G +LDGR + Sbjct: 142 EAACQQFNGYELDGRAL 158
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 229 bits (585), Expect = 3e-60 Identities = 118/199 (59%), Positives = 144/199 (72%), Gaps = 15/199 (7%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 +P LK+FVGNLPF+VDSA LAGLFE+AG+VEMVEV+YD++TGRSRGFGFVTM + E Sbjct: 80 QPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAP---------------RTPRAMXXXXX 325 EV AA +QFNGY GR +RVN+GP P + E + + Sbjct: 140 EVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARG 199 Query: 326 XXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSAD 505 S DS+N++YVGNLSWGVD+ L+ LFSEQG V+DAKV+YDRDSGRSRGFGFVTY S+ Sbjct: 200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSK 259 Query: 506 EVNNAISNLDGVDLDGRQI 562 EVN+AI +L+GVDLDGR I Sbjct: 260 EVNDAIDSLNGVDLDGRSI 278 Score = 79.3 bits (194), Expect = 7e-15 Identities = 40/84 (47%), Positives = 54/84 (64%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V+VGNL + VD L LF + G+V +VVYDR +GRSRGFGFVT S +EV A++ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEF 286 NG GR +RV++ PR +F Sbjct: 268 LNGVDLDGRSIRVSAAEERPRRQF 291
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 227 bits (579), Expect = 2e-59 Identities = 116/199 (58%), Positives = 144/199 (72%), Gaps = 15/199 (7%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 +P LK+FVGNLPF+VDSA LAGLFE+AG+VE+VEV+YD+++GRSRGFGFVTM + E Sbjct: 81 QPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAP---------------RTPRAMXXXXX 325 EV AA +QFNGY GR +RVN+GP P + E + + Sbjct: 141 EVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARG 200 Query: 326 XXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSAD 505 S DS+N++YVGNLSWGVD+ L+ LFSEQG V+DAKV+YDRDSGRSRGFGFVTY SA Sbjct: 201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAK 260 Query: 506 EVNNAISNLDGVDLDGRQI 562 EVN+AI +L+G+DLDGR I Sbjct: 261 EVNDAIDSLNGIDLDGRSI 279 Score = 80.1 bits (196), Expect = 4e-15 Identities = 40/84 (47%), Positives = 54/84 (64%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V+VGNL + VD L LF + G+V +VVYDR +GRSRGFGFVT S +EV A++ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEF 286 NG GR +RV++ PR +F Sbjct: 269 LNGIDLDGRSIRVSAAEERPRRQF 292
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 189 bits (480), Expect = 5e-48 Identities = 99/180 (55%), Positives = 120/180 (66%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAA 202 P K+FVGNLP+ VDS +LAG+F+ AG VE+ EV+Y+R T RSRGFGFVTM +VEE Sbjct: 52 PEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 111 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 AVE NGY GR L VN P E APR F+ + ++YVGNL W V Sbjct: 112 AVELLNGYDMDGRQLTVNKAAPRGSPERAPR-----------GDFEPSCRVYVGNLPWDV 160 Query: 383 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 D S LE LFSE GKV+ A+V+ DR++GRSRGFGFVT S EVN+AI+ LDG LDGR + Sbjct: 161 DTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAV 220 Score = 84.3 bits (207), Expect = 2e-16 Identities = 45/93 (48%), Positives = 55/93 (59%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 PR +V+VGNLP+ VD+++L LF + G V VV DR TGRSRGFGFVTM S Sbjct: 141 PRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSE 200 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEF 286 EV A+ +G T GR +RVN PR F Sbjct: 201 SEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 186 bits (473), Expect = 3e-47 Identities = 100/184 (54%), Positives = 123/184 (66%), Gaps = 1/184 (0%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 P K+FVGNL + V+S LA LFEQAG+VE+ EV+Y+R T +SRGFGFVTM SV+E Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203 Query: 194 VAAAVEQFNGYTFQGRPLRVNSGPPP-PRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 AVE+FN Y GR L VN P R E APR ++ A ++YVGNL Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRV------------YEPAFRVYVGNL 251 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLD 550 W VDN LE LFSE GKV++A+V+YDR++GRSRGFGFVT DE+N AIS LDG +L+ Sbjct: 252 PWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 311 Query: 551 GRQI 562 GR I Sbjct: 312 GRAI 315 Score = 85.5 bits (210), Expect = 9e-17 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 9/101 (8%) Frame = +2 Query: 2 ATPRPSTPR--------XLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSR 157 A PR S P +V+VGNLP+ VD+ +L LF + G V VVYDR TGRSR Sbjct: 226 AAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSR 285 Query: 158 GFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVN-SGPPPPR 277 GFGFVTM V+E+ A+ +G +GR +RVN + PPR Sbjct: 286 GFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 186 bits (473), Expect = 3e-47 Identities = 98/180 (54%), Positives = 124/180 (68%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAA 202 P K+FVGNLP+ VDS LA LFEQAG VE+ EV+Y+R T +SRGFGFVTM +VEE Sbjct: 133 PEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEK 192 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 AVE +N Y GR L VN R E R PR +F+ + ++YVGN+ WG+ Sbjct: 193 AVEMYNRYDVNGRLLTVNKAAR--RGERPERPPR---------TFEQSYRIYVGNIPWGI 241 Query: 383 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 D++ LE LFSE GKV+ A+V+YDR++GRSRGFGFVT S E+++AI+NLDG LDGR I Sbjct: 242 DDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTI 301 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 5/87 (5%) Frame = +2 Query: 11 RPSTP-----RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVT 175 RP P + +++VGN+P+ +D A+L LF + G V VVYDR TGRSRGFGFVT Sbjct: 218 RPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVT 277 Query: 176 MGSVEEVAAAVEQFNGYTFQGRPLRVN 256 M S E++ A+ +G + GR +RVN Sbjct: 278 MASEAEMSDAIANLDGQSLDGRTIRVN 304
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 179 bits (455), Expect = 4e-45 Identities = 95/177 (53%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVGNLP+ +DS LA LF+QAG VE+ EV+Y+R T RSRGFGFVTM +VEE AVE Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 215 FNGYTFQGRPLRVNSGPPP-PRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 ++ Y GR L VN P R E APRT F ++YVGN+ W +D++ Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSRPERAPRT------------FQPTYRIYVGNIPWDIDDA 205 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LE +FSE GKV+ A+V++DR+SGRSRGFGFVT S E++ AI+NLDG LDGR I Sbjct: 206 RLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTI 262 Score = 83.6 bits (205), Expect = 4e-16 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 8/100 (8%) Frame = +2 Query: 2 ATPRPSTPR--------XLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSR 157 A PR S P +++VGN+P+ +D A+L +F + G V VV+DR +GRSR Sbjct: 173 AAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSR 232 Query: 158 GFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPR 277 GFGFVTM S E++ A+ +G T GR +RVN+ PR Sbjct: 233 GFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPR 272
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 160 bits (404), Expect = 3e-39 Identities = 82/176 (46%), Positives = 116/176 (65%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +++VGNLPF++ S+QL+ +F +AG+V VE+VYDR+T RSRGF FVTMGSVEE A+ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 F+G GR ++VN P E A DS +KLYV NLSW + + Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGE--REVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQG 232 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L + F++Q + AKVIYDR SGRSRGFGF+T+ SA+ +N+A+ ++ V+L+GR + Sbjct: 233 LRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288 Score = 63.5 bits (153), Expect = 4e-10 Identities = 30/74 (40%), Positives = 44/74 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K++V NL + + S L F +V+YDR +GRSRGFGF+T S E + +A++ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 215 FNGYTFQGRPLRVN 256 N +GRPLR+N Sbjct: 278 MNEVELEGRPLRLN 291
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 137 bits (344), Expect = 3e-32 Identities = 69/100 (69%), Positives = 80/100 (80%), Gaps = 1/100 (1%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 R S LK+FVGNL F VDSAQLA LFE AG+VEMVEV+YD++TGRSRGFGFVTM + Sbjct: 92 RNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAA 151 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPP-RDEFAPRTPRA 307 EV AA +QFNGY F+GRPLRVN+GPPPP R+E R PR+ Sbjct: 152 EVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRS 191 Score = 116 bits (290), Expect = 5e-26 Identities = 54/74 (72%), Positives = 65/74 (87%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S N+LYVGNLSWGVD+ LENLF+EQGKV++A+VIYDRDSGRS+GFGFVT S+ EV A Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314 Query: 521 ISNLDGVDLDGRQI 562 I++L+G DLDGRQI Sbjct: 315 INSLNGADLDGRQI 328 Score = 77.0 bits (188), Expect = 3e-14 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +++VGNL + VD L LF + G V V+YDR +GRS+GFGFVT+ S +EV A+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 215 FNGYTFQGRPLRVNSGPP-PPRDEF 286 NG GR +RV+ PPR +F Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQF 342 Score = 72.8 bits (177), Expect = 6e-13 Identities = 37/77 (48%), Positives = 49/77 (63%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 SF KL+VGNLS+ VD++ L LF G V +VIYD+ +GRSRGFGFVT +A EV Sbjct: 94 SFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV 153 Query: 512 NNAISNLDGVDLDGRQI 562 A +G + +GR + Sbjct: 154 EAAAQQFNGYEFEGRPL 170
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 121 bits (304), Expect = 1e-27 Identities = 67/176 (38%), Positives = 105/176 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +++VGN+P +++ +L + E+ G++E+ EV+YD+ +GRSR FGFVTM +VE+ A +E+ Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 N GR ++VN P A +S K+Y+GNL+ V N Sbjct: 145 LNDTEIGGRKIKVNITEKP-----LEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNEL 199 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L++ FSE+GKVL AKV + +S GFGFV++ S +EV AI L+ L+G++I Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKI 255 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Frame = +2 Query: 248 RVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDS--ANKLYVGNLSWGVDNSTLENLFSEQG 421 RV++ PP + A T S D A +LYVGN+ ++N L + E G Sbjct: 50 RVSTNPPLLKVR-AVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHG 108 Query: 422 KVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + A+V+YD+ SGRSR FGFVT + ++ N I L+ ++ GR+I Sbjct: 109 AIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKI 155 Score = 57.4 bits (137), Expect = 3e-08 Identities = 30/74 (40%), Positives = 42/74 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 KV++GNL TV + L F + G V +V T +S GFGFV+ S EEV AA++ Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 215 FNGYTFQGRPLRVN 256 N +G+ +RVN Sbjct: 245 LNNSVLEGQKIRVN 258
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 93.2 bits (230), Expect = 5e-19 Identities = 54/175 (30%), Positives = 90/175 (51%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L F V +QL F Q G+V V V D +T RS G+G+V + ++ A A+++ Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P+RV ++ R P A +++ NL +D+ L Sbjct: 98 NYIPLYGKPIRV---------MYSHRDPSVRR--------SGAGNIFIKNLDESIDHKAL 140 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G ++ KV D SG+S+G+GFV Y + + AI L+G+ L+ +Q+ Sbjct: 141 HDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194 Score = 81.3 bits (199), Expect = 2e-15 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 3/187 (1%) Frame = +2 Query: 11 RPSTPRXLK---VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 R ST K V+V NL + L F + G + V+ D G+S+GFGFV Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFE 263 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYV 361 + ++ A AVE NG+ F + V E R F S+N LYV Sbjct: 264 NADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN-LYV 322 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 NL + + L+ +FS G V +KV+ D +G S+G GFV + + +E A+S L G Sbjct: 323 KNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGK 381 Query: 542 DLDGRQI 562 ++ + + Sbjct: 382 MIESKPL 388 Score = 79.7 bits (195), Expect = 5e-15 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 3/177 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D L F G++ +V D +G+S+G+GFV + E A+E+ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184 Query: 218 NGYTFQGRPLRVNSGP---PPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 NG + + V GP RD A +T +YV NL+ + Sbjct: 185 NGMLLNDKQVYV--GPFLRRQERDSTANKT--------------KFTNVYVKNLAESTTD 228 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQ 559 L+N F E GK+ A V+ D + G+S+GFGFV + +AD+ A+ +L+G D ++ Sbjct: 229 DDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE 284 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++V NL ++ +L +F G+V +V+ D G S+G GFV + EE A+ Q Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQL 378 Query: 218 NGYTFQGRPLRV 253 +G + +PL V Sbjct: 379 SGKMIESKPLYV 390
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 89.4 bits (220), Expect = 7e-18 Identities = 51/186 (27%), Positives = 91/186 (48%) Frame = +2 Query: 5 TPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 T P+T +FVG L +++D L FE G V V+Y+R T RSRG+G+V + Sbjct: 164 TEEPAT-----IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 218 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVG 364 A+++ G GRP+ + P A RA + ++ L++G Sbjct: 219 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP----AGNNDRAKKFGDTPS--EPSDTLFLG 272 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVD 544 NLS+ D + LF++ G+V+ ++ ++ + +GFG+V + + ++ A+ L G Sbjct: 273 NLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332 Query: 545 LDGRQI 562 +D R + Sbjct: 333 IDNRPV 338 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/90 (30%), Positives = 45/90 (50%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 PS P +F+GNL F D + LF + G V V + T + +GFG+V ++E+ Sbjct: 262 PSEPSDT-LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMED 320 Query: 194 VAAAVEQFNGYTFQGRPLRVNSGPPPPRDE 283 A++ G RP+R++ P P ++ Sbjct: 321 AKKALDALQGEYIDNRPVRLDFSSPRPNND 350
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 89.0 bits (219), Expect = 9e-18 Identities = 58/175 (33%), Positives = 86/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF+ NL ++D+ L F G++ +VV D SRG+GFV + E A++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R + F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------HFKSRRERELEYGAKVMEFTN---VYIKNFGEDMDDKRL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 +FS G L KV+ D DSGRSRGFGFV YG+ +E A+S ++G +++GR I Sbjct: 208 REIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261 Score = 82.4 bits (202), Expect = 8e-16 Identities = 53/167 (31%), Positives = 80/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L +F G+ V+V+ D +GRSRGFGFV G+ EE AV + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG GR + V + + + N LYV NL G+D+ L Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN-LYVKNLDDGIDDDRL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 F G + AKV+ + G S+GFGFV + S +E A++ ++G Sbjct: 311 RKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 69.3 bits (168), Expect = 7e-12 Identities = 45/175 (25%), Positives = 79/175 (45%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++G+L V A L F AG + + V D T RS + ++ + A++ Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N +GRP+R+ ++ R P +++ NL +DN L Sbjct: 73 NFEVIKGRPIRI---------MWSQRDPGLRK--------SGVGNVFIKNLDESIDNKAL 115 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L KV+ D SRG+GFV + + + N AI ++G+ L+ R++ Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV 168 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/74 (33%), Positives = 38/74 (51%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + G S+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVSTKPLYV 365
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 88.6 bits (218), Expect = 1e-17 Identities = 55/187 (29%), Positives = 92/187 (49%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 ATP + P ++VG L +V A L LF G V + V D +T RS G+ +V Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYV 361 ++E+ A+++ N +GRP R+ P + R M +++ Sbjct: 130 NMEDGEKALDELNYTLIKGRPCRIMWSQRDP-------SLRKM----------GTGNVFI 172 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 NL +DN L + FS GK+L KV D + G ++G+GFV + S + N AI +++G+ Sbjct: 173 KNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGM 231 Query: 542 DLDGRQI 562 L+ +++ Sbjct: 232 LLNDKKV 238 Score = 77.0 bits (188), Expect = 3e-14 Identities = 50/175 (28%), Positives = 85/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ NL + + + LF Q G + + +V D+ + RGFGFV + E AV++ Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N ++G+ L V E R + N L++ NL VD+ L Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN-LFIKNLQDEVDDERL 380 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G + AK++ D + G+S+GFGFV Y + +E N A++ ++ L G+ + Sbjct: 381 KAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434 Score = 67.8 bits (164), Expect = 2e-11 Identities = 44/175 (25%), Positives = 77/175 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF+ NL +D+ L F G + +V D + G ++G+GFV SVE AA+E Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHV 228 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG + + V R R +F +Y+ NL + Sbjct: 229 NGMLLNDKKVYVG--------HHVSRRERQSKVEALKANF---TNVYIKNLDTEITEQEF 277 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 +LF + G++ ++ D++ + RGFGFV Y + + A+ L+ + G+++ Sbjct: 278 SDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + +F+ NL VD +L F G++ +++ D G+S+GFGFV + EE AV Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVT 422 Query: 212 QFNGYTFQGRPLRV 253 + N G+PL V Sbjct: 423 EMNQRMLAGKPLYV 436
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 88.2 bits (217), Expect = 1e-17 Identities = 57/175 (32%), Positives = 86/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF+ NL ++D+ L F G++ +VV D SRG+GFV + E A++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R + F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------HFKSRRERELEYGAKVMEFTN---VYIKNFGEDMDDKRL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 +FS G L KV+ D D+GRSRGFGFV YG+ +E A+S ++G +++GR I Sbjct: 208 REIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261 Score = 85.9 bits (211), Expect = 7e-17 Identities = 55/167 (32%), Positives = 81/167 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L +F G+ V+V+ D TGRSRGFGFV G+ EE AV + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG GR + V + + + N LYV NL G+D+ L Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN-LYVKNLDDGIDDDRL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + G S+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 72.4 bits (176), Expect = 8e-13 Identities = 47/175 (26%), Positives = 80/175 (45%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V A L F AG + + V D T RS G+ ++ + A++ Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N +GRP+R+ ++ R P +++ NL +DN L Sbjct: 73 NFEVIKGRPIRI---------MWSQRDPGLRK--------SGVGNVFIKNLDESIDNKAL 115 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L KV+ D SRG+GFV + + + N AI ++G+ L+ R++ Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168 Score = 42.7 bits (99), Expect = 7e-04 Identities = 25/74 (33%), Positives = 38/74 (51%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + G S+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVSTKPLYV 365
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 87.4 bits (215), Expect = 2e-17 Identities = 60/173 (34%), Positives = 83/173 (47%) Frame = +2 Query: 20 TPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVA 199 TPR V+V NLP + +L F + G + V+ D+ +G SR FGFV E A Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAA 283 Query: 200 AAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWG 379 +AVE+ NG + L V E R AN LY+ NL Sbjct: 284 SAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN-LYLKNLDDS 342 Query: 380 VDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 VD+ L+ +FSE G V +KV+ + G SRGFGFV Y + +E A+S ++G Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNG 394 Score = 70.9 bits (172), Expect = 2e-12 Identities = 49/170 (28%), Positives = 78/170 (45%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +V D +TGRS+G+GFV E AA+++ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG + + V F R RA F +YV NL + L Sbjct: 197 NGMLMNDKQVFVG--------HFIRRQERARDENTPTPRF---TNVYVKNLPKEIGEDEL 245 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 F + G + A V+ D+ SG SR FGFV + + +A+ ++G+ L Sbjct: 246 RKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISL 294 Score = 65.9 bits (159), Expect = 8e-11 Identities = 45/175 (25%), Positives = 77/175 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++ G+L V A L LF+ +V V V D+ RS G+ ++ + + A+E Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N RP+R+ P + + +++ NL +DN L Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGK-----------------GNIFIKNLDASIDNKAL 152 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 FS G +L KV D +GRS+G+GFV + + AI L+G+ ++ +Q+ Sbjct: 153 FETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NL +VD +L +F + G+V +V+ + G SRGFGFV + EE A+ + Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392 Query: 218 NGYTFQGRPLRV 253 NG +PL + Sbjct: 393 NGKMIGRKPLYI 404
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 87.4 bits (215), Expect = 2e-17 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 3/179 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTM---GSVEEVAAA 205 K+F+G L + L F + G+V ++++ D TGRSRGFGF++ SV+EV Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 206 VEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVD 385 +G P R PRDE D K++VG + V Sbjct: 220 QHILDGKVID--PKRAI-----PRDEQ-----------------DKTGKIFVGGIGPDVR 255 Query: 386 NSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 E FS+ G ++DA+++ D+D+G+SRGFGFVTY SAD V+ N +D R+I Sbjct: 256 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN-KFIDFKDRKI 313 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/89 (32%), Positives = 44/89 (49%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A PR + K+FVG + V + F Q G++ +++ D+ TG+SRGFGFVT Sbjct: 233 AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 292 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGPP 268 S + V V Q F+ R + + P Sbjct: 293 SADAV-DRVCQNKFIDFKDRKIEIKRAEP 320
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 86.3 bits (212), Expect = 6e-17 Identities = 55/175 (31%), Positives = 86/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF+ NL ++D+ L F G + +VV D SRG+GFV + E A++ Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R + F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------HFKSRRERELEYGAKVMEFTN---VYIKNFGEDMDDKRL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + +FS G L KV+ D +SGRSRGFGFV YG+ +E A++ ++G +++GR + Sbjct: 208 KEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261 Score = 82.8 bits (203), Expect = 6e-16 Identities = 53/167 (31%), Positives = 80/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L +F G+ V+V+ D +GRSRGFGFV G+ EE AV + Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG GR + V + + + N LYV NL G+D+ L Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN-LYVKNLDDGIDDDRL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + KV+ + G S+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 70.5 bits (171), Expect = 3e-12 Identities = 46/175 (26%), Positives = 80/175 (45%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++G+L V A L F AG + + V D T RS G+ ++ + A++ Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N +GRP+R+ ++ R P +++ NL +DN L Sbjct: 73 NFEVIKGRPIRI---------MWSQRDPGLRK--------SGVGNVFIKNLDDSIDNKAL 115 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L KV+ D SRG+GFV + + + N AI ++G+ L+ R++ Sbjct: 116 YDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168 Score = 42.7 bits (99), Expect = 7e-04 Identities = 25/74 (33%), Positives = 38/74 (51%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + G S+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVSTKPLYV 365
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 85.9 bits (211), Expect = 7e-17 Identities = 38/75 (50%), Positives = 55/75 (73%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D + +VG L+W N +LEN F+ G++LD+KVI DR++GRSRGFGFVT+ S + + + Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64 Query: 518 AISNLDGVDLDGRQI 562 AI N++G +LDGR I Sbjct: 65 AIENMNGKELDGRNI 79 Score = 58.9 bits (141), Expect = 9e-09 Identities = 30/74 (40%), Positives = 39/74 (52%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + + L F G + +V+ DR TGRSRGFGFVT S + A+E Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 69 MNGKELDGRNITVN 82
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 84.0 bits (206), Expect = 3e-16 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL F L LF G V +++ + G RG G V E V A+ +F Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181 Query: 218 NGYTFQGRPLRVNSGPPPPR--DEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 +G F R L V PPP EF+ + R D+ ++++ NL + ++ Sbjct: 182 DGALFMDRKLMVRQDNPPPEAAKEFSKKATR--------EEIDNGFEVFIINLPYSMNWQ 233 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +L+++F E G VL A V D +G SRGFG V Y + DE+ AI +G++++GR Sbjct: 234 SLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGR 287 Score = 58.9 bits (141), Expect = 9e-09 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 26/207 (12%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 R +VF+ NLP++++ L +F++ G V +V D G SRGFG V + + Sbjct: 212 REEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTED 270 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPR---DEFAPR---------TPRAMXXXXXXXS 334 E+ A++ FNG +GR L V G R D + R T + Sbjct: 271 EMIRAIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQDAAVHI 330 Query: 335 FDSANK--------------LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSR 472 ++A K +Y NL + S L +LF GK+ +A+ + +++G+ Sbjct: 331 DETAAKFTEGVNPGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPT 389 Query: 473 GFGFVTYGSADEVNNAISNLDGVDLDG 553 G V Y + + + I L+ + G Sbjct: 390 GVAVVEYENLVDADFCIQKLNNYNYGG 416
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 84.0 bits (206), Expect = 3e-16 Identities = 38/75 (50%), Positives = 54/75 (72%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D + +VG L+W +N TLE F+ G+V+D+KVI DR++GRSRGFGFVT+ S + + Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64 Query: 518 AISNLDGVDLDGRQI 562 AI N++G +LDGR I Sbjct: 65 AIENMNGKELDGRNI 79 Score = 59.3 bits (142), Expect = 7e-09 Identities = 31/74 (41%), Positives = 41/74 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + ++ L F G V +V+ DR TGRSRGFGFVT S + + A+E Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 69 MNGKELDGRNITVN 82
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 83.6 bits (205), Expect = 4e-16 Identities = 51/163 (31%), Positives = 75/163 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L F L +EQ G + V+ D + RSRGFGFVT + EV AA+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 +T GR + P+ A + + KL+VG + + Sbjct: 70 -RPHTIDGRVVE-------------PKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHH 115 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L F E GK+ ++I D+ SG+ RGFGFVT+ D V+ + Sbjct: 116 LREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 53.1 bits (126), Expect = 5e-07 Identities = 28/71 (39%), Positives = 43/71 (60%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL++G LS+ +L N + + G++ D V+ D S RSRGFGFVT+ +EV+ A+S Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 530 LDGVDLDGRQI 562 +DGR + Sbjct: 70 RPHT-IDGRVV 79 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G +E E++ D+ +G+ RGFGFVT + V V Q Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 215 ----FNGYTFQGR 241 NG+ + R Sbjct: 161 KYHTINGHNAEVR 173
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 82.4 bits (202), Expect = 8e-16 Identities = 37/73 (50%), Positives = 52/73 (71%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + KL++G LSWG D+++L + F+ G V+DAKVI DR++GRSRGFGFV + AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 524 SNLDGVDLDGRQI 562 S +DG +L+GR I Sbjct: 94 SEMDGKELNGRHI 106 Score = 64.3 bits (155), Expect = 2e-10 Identities = 37/91 (40%), Positives = 46/91 (50%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + D A L F G V +V+ DR TGRSRGFGFV AA+ + Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRA 307 +G GR +RVN P D P PRA Sbjct: 96 MDGKELNGRHIRVN----PANDR--PSAPRA 120
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 82.4 bits (202), Expect = 8e-16 Identities = 37/75 (49%), Positives = 52/75 (69%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D + +VG L+W D+ LE FS+ G+VLD+K+I DR++GRSRGFGFVT+ + + Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 518 AISNLDGVDLDGRQI 562 AI ++G DLDGR I Sbjct: 65 AIEGMNGQDLDGRSI 79 Score = 60.1 bits (144), Expect = 4e-09 Identities = 31/74 (41%), Positives = 40/74 (54%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + D L F Q G V +++ DR TGRSRGFGFVT + + A+E Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 69 MNGQDLDGRSITVN 82
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 82.4 bits (202), Expect = 8e-16 Identities = 52/163 (31%), Positives = 77/163 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L F L +EQ G + V+ D + RSRGFGFVT S+ EV AA+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 ++ GR + P+ A + + KL+VG + + Sbjct: 70 -RPHSIDGRVVE-------------PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHH 115 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L + F E GK+ ++I DR SG+ RGFGFVT+ D V+ + Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/71 (40%), Positives = 43/71 (60%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL++G LS+ +L N + + GK+ D V+ D S RSRGFGFVT+ S EV+ A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 530 LDGVDLDGRQI 562 +DGR + Sbjct: 70 RPH-SIDGRVV 79 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G ++ +E++ DR +G+ RGFGFVT + V V Q Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Query: 215 ----FNGYTFQGR 241 NG+ + R Sbjct: 161 KYHTINGHNAEVR 173
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 82.4 bits (202), Expect = 8e-16 Identities = 52/163 (31%), Positives = 77/163 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L F L +EQ G + V+ D + RSRGFGFVT S+ EV AA+ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 ++ GR + P+ A + + KL+VG + + Sbjct: 82 -RPHSIDGRVVE-------------PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHH 127 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L + F E GK+ ++I DR SG+ RGFGFVT+ D V+ + Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/71 (40%), Positives = 43/71 (60%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL++G LS+ +L N + + GK+ D V+ D S RSRGFGFVT+ S EV+ A++ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 530 LDGVDLDGRQI 562 +DGR + Sbjct: 82 RPH-SIDGRVV 91 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G ++ +E++ DR +G+ RGFGFVT + V V Q Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172 Query: 215 ----FNGYTFQGR 241 NG+ + R Sbjct: 173 KYHTINGHNAEVR 185
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 82.0 bits (201), Expect = 1e-15 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G++ V+ D T RSRGFGFVT +VE Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 EV AA+ RP +V+ P+ + + + K++VG + Sbjct: 66 EVDAAM--------NARPHKVDGRVVEPKRAVSREDSQRPGAHL------TVKKIFVGGI 111 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + L + F + GK+ +++ DR SG+ RGF FVT+ D V+ + Sbjct: 112 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.9 bits (128), Expect = 3e-07 Identities = 28/75 (37%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L + F + G + D V+ D ++ RSRGFGFVTY + +EV+ Sbjct: 10 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 69 Query: 518 AISNLDGVDLDGRQI 562 A+ N +DGR + Sbjct: 70 AM-NARPHKVDGRVV 83 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FEQ G +E++E++ DR +G+ RGF FVT + V V Q Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 82.0 bits (201), Expect = 1e-15 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G++ V+ D T RSRGFGFVT +VE Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 EV AA+ RP +V+ P+ + + + K++VG + Sbjct: 66 EVDAAM--------NARPHKVDGRVVEPKRAVSREDSQRPGAHL------TVKKIFVGGI 111 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + L + F + GK+ +++ DR SG+ RGF FVT+ D V+ + Sbjct: 112 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.9 bits (128), Expect = 3e-07 Identities = 28/75 (37%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L + F + G + D V+ D ++ RSRGFGFVTY + +EV+ Sbjct: 10 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 69 Query: 518 AISNLDGVDLDGRQI 562 A+ N +DGR + Sbjct: 70 AM-NARPHKVDGRVV 83 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FEQ G +E++E++ DR +G+ RGF FVT + V V Q Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 82.0 bits (201), Expect = 1e-15 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G++ V+ D T RSRGFGFVT +VE Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 EV AA+ RP +V+ P+ + + + K++VG + Sbjct: 66 EVDAAM--------NARPHKVDGRVVEPKRAVSREDSQRPGAHL------TVKKIFVGGI 111 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + L + F + GK+ +++ DR SG+ RGF FVT+ D V+ + Sbjct: 112 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.9 bits (128), Expect = 3e-07 Identities = 28/75 (37%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L + F + G + D V+ D ++ RSRGFGFVTY + +EV+ Sbjct: 10 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 69 Query: 518 AISNLDGVDLDGRQI 562 A+ N +DGR + Sbjct: 70 AM-NARPHKVDGRVV 83 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FEQ G +E++E++ DR +G+ RGF FVT + V V Q Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 82.0 bits (201), Expect = 1e-15 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G++ V+ D T RSRGFGFVT +VE Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 EV AA+ RP +V+ P+ + + + K++VG + Sbjct: 66 EVDAAM--------NARPHKVDGRVVEPKRAVSREDSQRPGAHL------TVKKIFVGGI 111 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + L + F + GK+ +++ DR SG+ RGF FVT+ D V+ + Sbjct: 112 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.9 bits (128), Expect = 3e-07 Identities = 28/75 (37%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L + F + G + D V+ D ++ RSRGFGFVTY + +EV+ Sbjct: 10 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 69 Query: 518 AISNLDGVDLDGRQI 562 A+ N +DGR + Sbjct: 70 AM-NARPHKVDGRVV 83 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FEQ G +E++E++ DR +G+ RGF FVT + V V Q Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 81.6 bits (200), Expect = 1e-15 Identities = 51/167 (30%), Positives = 82/167 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L LF + G V+V+ D +G+S+GFGFV+ E+ AV++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 77.4 bits (189), Expect = 3e-14 Identities = 50/175 (28%), Positives = 87/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL ++++ L G++ VV D S+G+GFV + E A+++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG GR + V +F R R F + +Y+ N +D+ L Sbjct: 159 NGMLLNGRKVFVG--------QFKSRKEREAELGARAKEFPN---VYIKNFGEDMDDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++LF + G L KV+ D +SG+S+GFGFV++ ++ A+ ++G +L+G+QI Sbjct: 208 KDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261 Score = 45.8 bits (107), Expect = 8e-05 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 81.6 bits (200), Expect = 1e-15 Identities = 51/167 (30%), Positives = 82/167 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L LF + G V+V+ D +G+S+GFGFV+ E+ AV++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 80.5 bits (197), Expect = 3e-15 Identities = 51/175 (29%), Positives = 87/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +VV D S+G+GFV + E A+E+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEFTN---VYIKNFGEDMDDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++LF + G L KV+ D +SG+S+GFGFV++ ++ A+ ++G +L+G+QI Sbjct: 208 KDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 81.6 bits (200), Expect = 1e-15 Identities = 51/167 (30%), Positives = 82/167 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L LF + G V+V+ D +G+S+GFGFV+ E+ AV++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 80.5 bits (197), Expect = 3e-15 Identities = 51/175 (29%), Positives = 87/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +VV D S+G+GFV + E A+E+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEFTN---VYIKNFGEDMDDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++LF + G L KV+ D +SG+S+GFGFV++ ++ A+ ++G +L+G+QI Sbjct: 208 KDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 81.3 bits (199), Expect = 2e-15 Identities = 51/167 (30%), Positives = 82/167 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L LF + G V+V+ D +G+S+GFGFV+ E+ AV++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 80.1 bits (196), Expect = 4e-15 Identities = 51/175 (29%), Positives = 86/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +VV D S+G+GFV + E A+E+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEFTN---VYIKNFGEDMDDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + LF + G L KV+ D +SG+S+GFGFV++ ++ A+ ++G +L+G+QI Sbjct: 208 KELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 81.3 bits (199), Expect = 2e-15 Identities = 51/167 (30%), Positives = 82/167 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L LF + G V+V+ D +G+S+GFGFV+ E+ AV++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 78.6 bits (192), Expect = 1e-14 Identities = 50/175 (28%), Positives = 86/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +VV D S+G+GFV + E A+E+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F + R F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------RFKSQKEREAELGARAKEFTN---VYIKNFGEDMDDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + LF + G L KV+ D +SG+S+GFGFV++ ++ A+ ++G +L+G+QI Sbjct: 208 KELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 81.3 bits (199), Expect = 2e-15 Identities = 53/175 (30%), Positives = 86/175 (49%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF+ NL ++D+ L F G++ +VV D S+G+ FV + E A+E+ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R F + +Y+ N VD+ +L Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGAKAKEFTN---VYIKNFGEEVDDESL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + LFS+ GK L KV+ D +G+S+GFGFV+Y ++ N A+ ++G ++ G+ I Sbjct: 208 KELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261 Score = 80.1 bits (196), Expect = 4e-15 Identities = 52/167 (31%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N VD L LF Q G V+V+ D G+S+GFGFV+ E+ AVE+ Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LY+ NL +D+ L Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 FS G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 50.1 bits (118), Expect = 4e-06 Identities = 29/81 (35%), Positives = 43/81 (53%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 R S + + +++ NL T+D +L F GS+ +V+ + GRS+GFGFV S E Sbjct: 287 RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPE 344 Query: 191 EVAAAVEQFNGYTFQGRPLRV 253 E AV + NG +PL V Sbjct: 345 EATKAVTEMNGRIVGSKPLYV 365
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 80.9 bits (198), Expect = 2e-15 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 1/176 (0%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V+VG L V L LF QAG V + DR+TG+ +G+GFV S E+ A++ Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P+RVN + D +++GNL +D L Sbjct: 75 NMIKLYGKPIRVNK------------------ASAHNKNLDVGANIFIGNLDPEIDEKLL 116 Query: 398 ENLFSEQGKVLDA-KVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L K++ D D+G S+G+ F+ + S D + AI ++G L R I Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 172 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSV-EMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +F+GNL +D L F G + + +++ D TG S+G+ F+ S + AA+E Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161 Query: 215 FNGYTFQGRPLRVN 256 NG RP+ V+ Sbjct: 162 MNGQYLCNRPITVS 175
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 80.1 bits (196), Expect = 4e-15 Identities = 48/167 (28%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G +E ++V D++TG+S G+GFV ++ A+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + L Sbjct: 101 NGLRLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKEL 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 66.6 bits (161), Expect = 5e-11 Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 46/231 (19%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV----------------------NSGPPPPRDEFA 289 E A++ NG G P+ V N P P + A Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQA 234 Query: 290 PR----------------TPRAMXXXXXXXSFDSANK------LYVGNLSWGVDNSTLEN 403 R +P + + ++V NL+ D S L Sbjct: 235 QRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQ 294 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F G V + KVI D ++ + +GFGFVT + DE AI++L+G L R Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/73 (39%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L +F G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 80.1 bits (196), Expect = 4e-15 Identities = 48/167 (28%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G +E ++V D++TG+S G+GFV ++ A+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + L Sbjct: 101 NGLRLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKEL 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 66.6 bits (161), Expect = 5e-11 Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 46/231 (19%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV----------------------NSGPPPPRDEFA 289 E A++ NG G P+ V N P P + A Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQA 234 Query: 290 PR----------------TPRAMXXXXXXXSFDSANK------LYVGNLSWGVDNSTLEN 403 R +P + + ++V NL+ D S L Sbjct: 235 QRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQ 294 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F G V + KVI D ++ + +GFGFVT + DE AI++L+G L R Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/73 (39%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L +F G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 80.1 bits (196), Expect = 4e-15 Identities = 48/167 (28%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G +E ++V D++TG+S G+GFV ++ A+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + L Sbjct: 101 NGLRLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKEL 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 67.0 bits (162), Expect = 3e-11 Identities = 61/232 (26%), Positives = 91/232 (39%), Gaps = 47/232 (20%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV----------------------NSGPPPP----- 274 E A++ NG G P+ V N P P Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQA 234 Query: 275 ---------------RDEFAPRTPRAMXXXXXXXSFDSANK---LYVGNLSWGVDNSTLE 400 + F+P T M ++V NL+ D S L Sbjct: 235 QRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILW 294 Query: 401 NLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F G V + KVI D ++ + +GFGFVT + DE AI++L+G L R Sbjct: 295 QMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 346 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/73 (39%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L +F G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 339 NGYRLGDRVLQVS 351
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 79.7 bits (195), Expect = 5e-15 Identities = 36/77 (46%), Positives = 52/77 (67%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S D + +VG L+W D+ LE F++ G V+D+K+I DR++GRSRGFGFVT+ + Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62 Query: 512 NNAISNLDGVDLDGRQI 562 +AI ++G DLDGR I Sbjct: 63 KDAIEGMNGQDLDGRSI 79 Score = 59.3 bits (142), Expect = 7e-09 Identities = 31/74 (41%), Positives = 40/74 (54%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + D L F Q G V +++ DR TGRSRGFGFVT + + A+E Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 69 MNGQDLDGRSITVN 82
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 79.7 bits (195), Expect = 5e-15 Identities = 50/163 (30%), Positives = 75/163 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L F L +EQ G++ V+ D + RSRGFGFVT + EV AA+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 +T GR + P+ A + + KL+VG + + Sbjct: 70 -RPHTIDGRVVE-------------PKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHH 115 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L F E GK+ ++I D+ SG+ RGF FVT+ D V+ + Sbjct: 116 LREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/71 (38%), Positives = 42/71 (59%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL++G LS+ +L N + + G + D V+ D S RSRGFGFVT+ +EV+ A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 530 LDGVDLDGRQI 562 +DGR + Sbjct: 70 RPHT-IDGRVV 79 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G ++ +E++ D+ +G+ RGF FVT + V V Q Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Query: 215 ----FNGYTFQGR 241 NG+ + R Sbjct: 161 KYHTINGHNAEVR 173
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 79.3 bits (194), Expect = 7e-15 Identities = 35/75 (46%), Positives = 52/75 (69%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D + +VG L+W D +LE FS+ G+++D+K+I DR++GRSRGFGFVT+ + + Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 518 AISNLDGVDLDGRQI 562 AI ++G DLDGR I Sbjct: 65 AIEGMNGQDLDGRSI 79 Score = 59.7 bits (143), Expect = 6e-09 Identities = 30/74 (40%), Positives = 40/74 (54%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + D L F Q G + +++ DR TGRSRGFGFVT + + A+E Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 69 MNGQDLDGRSITVN 82
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 79.3 bits (194), Expect = 7e-15 Identities = 56/174 (32%), Positives = 80/174 (45%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 + P V+V NLP + +L F + G + V+ D+ +G SR FGFV S E Sbjct: 220 AVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAA 278 Query: 197 AAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSW 376 A AVE+ NG + L V E R +N LY+ NL Sbjct: 279 AVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-LYLKNLDD 337 Query: 377 GVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 V++ L+ +FSE G V KV+ + G SRGFGFV Y + +E A+ ++G Sbjct: 338 SVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNG 390 Score = 75.1 bits (183), Expect = 1e-13 Identities = 49/175 (28%), Positives = 82/175 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L +V+ + L LF Q V + V D +T RS G+ +V + E+ + A+E Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 105 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N + RP+R+ P + + +++ NL +DN L Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTRLSGK-----------------GNVFIKNLDASIDNKAL 148 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 FS G +L KV D GRS+G+GFV + + AI L+G+ L+ +Q+ Sbjct: 149 YETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 202 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NL +V+ +L +F + G+V +V+ + G SRGFGFV + EE A+++ Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388 Query: 218 NGYTFQGRPLRV 253 NG +PL V Sbjct: 389 NGKMIGRKPLYV 400
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 79.0 bits (193), Expect = 9e-15 Identities = 46/167 (27%), Positives = 77/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + + LF G +E ++V D++TG+S G+GFV + A+ Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + + Sbjct: 101 NGLKLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMSQKEM 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 65.5 bits (158), Expect = 1e-10 Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 54/239 (22%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ ++ LF Q G + ++ D+ TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRVNSGPPPPRD------------------------- 280 E A++ NG G P+ V P + Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234 Query: 281 -----------EFAPRTPRAMXXXXXXXSFDSANKL----------------YVGNLSWG 379 + ++P ++ + D + L +V NLS Sbjct: 235 QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE 294 Query: 380 VDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 D S L LF G V + KVI D + + +GFGFVT + DE AI++L+G L R Sbjct: 295 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGER 353 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L LF G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 346 NGYRLGERVLQVS 358
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 79.0 bits (193), Expect = 9e-15 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVG+L + + + F G + VV D TG+S+G+GFV+ + + A++Q Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 218 NGYTFQGRPLRVN---SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 G GR +R N PP P+ + T + S S +Y G ++ G+ Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G++++ +V D +G+ FV + S + +AI +++G ++G + Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279 Score = 76.3 bits (186), Expect = 6e-14 Identities = 49/175 (28%), Positives = 85/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VGNL V A + LF Q G + +++ D T + + FV AAA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ ++VN P + + + F ++VG+LS + + Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFH----VFVGDLSPQITTEDI 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + F+ G++ DA+V+ D +G+S+G+GFV++ + + NAI + G L GRQI Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 79.0 bits (193), Expect = 9e-15 Identities = 51/183 (27%), Positives = 82/183 (44%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P + VFVG L + VD L FE+ G++ V+ D +GRS+G+G+V + Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGN 367 E AAV GR + ++ P P + RA + ++ ++VGN Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS--EPSDTVFVGN 372 Query: 368 LSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 LS+ L F G + ++ D SGR +GFG+VT+ D + ++G + Sbjct: 373 LSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFI 431 Query: 548 DGR 556 GR Sbjct: 432 AGR 434 Score = 58.5 bits (140), Expect = 1e-08 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 ++VG LSW VD+ L F E G ++ A+VI D SGRS+G+G+V + + + A++ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 533 DGVDLDGRQI 562 ++DGR + Sbjct: 325 GTKEIDGRMV 334 Score = 55.1 bits (131), Expect = 1e-07 Identities = 27/77 (35%), Positives = 40/77 (51%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVGNL F L+ F G ++ + + D +GR +GFG+VT ++ VE Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM- 426 Query: 218 NGYTFQGRPLRVNSGPP 268 NG+ GRP R++ P Sbjct: 427 NGHFIAGRPCRLDFSTP 443
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 79.0 bits (193), Expect = 9e-15 Identities = 47/162 (29%), Positives = 77/162 (47%) Frame = +2 Query: 53 LPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTF 232 LP + +L LF G +E ++V D++TG+S G+GFV ++ A+ NG Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 233 QGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFS 412 Q + ++V+ P S AN LYV L + LE LFS Sbjct: 106 QTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKELEQLFS 146 Query: 413 EQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 66.6 bits (161), Expect = 5e-11 Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 46/231 (19%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV----------------------NSGPPPPRDEFA 289 E A++ NG G P+ V N P P + A Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQA 234 Query: 290 PR----------------TPRAMXXXXXXXSFDSANK------LYVGNLSWGVDNSTLEN 403 R +P + + ++V NL+ D S L Sbjct: 235 QRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQ 294 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F G V + KVI D ++ + +GFGFVT + DE AI++L+G L R Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/73 (39%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L +F G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 78.6 bits (192), Expect = 1e-14 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G++ V+ D T RSRGFGFVT +VE Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 +V AA+ RP +V+ P+ + + + K++VG + Sbjct: 66 KVDAAM--------NARPHKVDGRVVEPKRAVSREDSQRPGAHL------TVKKIFVGGI 111 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + L + F + GK+ +++ DR SG+ RGF FVT+ + V+ + Sbjct: 112 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L + F + G + D V+ D ++ RSRGFGFVTY + ++V+ Sbjct: 10 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDA 69 Query: 518 AISNLDGVDLDGRQI 562 A+ N +DGR + Sbjct: 70 AM-NARPHKVDGRVV 83 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FEQ G +E++E++ DR +G+ RGF FVT V V Q Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 78.6 bits (192), Expect = 1e-14 Identities = 47/167 (28%), Positives = 78/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + + LF G +E ++V D++TG+S G+GFV ++ A+ Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + L Sbjct: 108 NGLRLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKEL 148 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195 Score = 67.4 bits (163), Expect = 3e-11 Identities = 65/245 (26%), Positives = 92/245 (37%), Gaps = 60/245 (24%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRVN--------------------------------- 256 E A++ NG G P+ V Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 241 Query: 257 -------------------SGPPPP---RDEFAPRTPRAMXXXXXXXSFDSANK---LYV 361 SGP PP F+P T M ++V Sbjct: 242 QRFRLDNLLNMAYGVKRLMSGPVPPSACSPRFSPITIDGMTSLVGMNIPGHTGTGWCIFV 301 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 NLS D S L LF G V + KVI D ++ + +GFGFVT + DE AI++L+G Sbjct: 302 YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY 361 Query: 542 DLDGR 556 L R Sbjct: 362 RLGDR 366 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L LF G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 359 NGYRLGDRVLQVS 371
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 78.6 bits (192), Expect = 1e-14 Identities = 47/167 (28%), Positives = 78/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + + LF G +E ++V D++TG+S G+GFV ++ A+ Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + L Sbjct: 113 NGLRLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKEL 153 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200 Score = 67.4 bits (163), Expect = 3e-11 Identities = 65/245 (26%), Positives = 92/245 (37%), Gaps = 60/245 (24%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 127 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRVN--------------------------------- 256 E A++ NG G P+ V Sbjct: 187 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 246 Query: 257 -------------------SGPPPPR---DEFAPRTPRAMXXXXXXXSFDSANK---LYV 361 SGP PP F+P T M ++V Sbjct: 247 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFV 306 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 NLS D S L LF G V + KVI D ++ + +GFGFVT + DE AI++L+G Sbjct: 307 YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY 366 Query: 542 DLDGR 556 L R Sbjct: 367 RLGDR 371 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L LF G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 364 NGYRLGDRVLQVS 376
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 78.6 bits (192), Expect = 1e-14 Identities = 51/167 (30%), Positives = 80/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N +D +L F Q G+ V+V+ D G+SRGFGFV+ E+ AV+ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 F+ G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 78.2 bits (191), Expect = 2e-14 Identities = 50/175 (28%), Positives = 84/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +VV D S+G+GFV + E A+++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R F + +Y+ N +D+ L Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEFTN---VYIKNFGEDMDDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + F + G L KV+ D D G+SRGFGFV++ ++ A+ +++G DL+G+ I Sbjct: 208 KEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261 Score = 45.8 bits (107), Expect = 8e-05 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F GS+ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 78.6 bits (192), Expect = 1e-14 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 3/173 (1%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FE+ G++ V+ D T RSRGFGFVT VE Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX--XSFDSANKLYVG 364 EV AA+ RP +V+ P+ RA+ + + K++VG Sbjct: 88 EVDAAM--------CARPHKVDGRVVEPK--------RAVSREDSVKPGAHLTVKKIFVG 131 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + L + F + GK+ +V+ DR SG+ RGF FVT+ D V+ + Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Frame = +2 Query: 263 PPP--PRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDA 436 PPP P+ + R R + KL++G LS+ + +L F + G + D Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64 Query: 437 KVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 V+ D + RSRGFGFVTY +EV+ A+ Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G +E +EV+ DR +G+ RGF FVT + V V Q Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 78.6 bits (192), Expect = 1e-14 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 3/173 (1%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FE+ G++ V+ D T RSRGFGFVT VE Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX--XSFDSANKLYVG 364 EV AA+ RP +V+ P+ RA+ + + K++VG Sbjct: 88 EVDAAM--------CARPHKVDGRVVEPK--------RAVSREDSVKPGAHLTVKKIFVG 131 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + L + F + GK+ +V+ DR SG+ RGF FVT+ D V+ + Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Frame = +2 Query: 263 PPP--PRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDA 436 PPP P+ + R R + KL++G LS+ + +L F + G + D Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64 Query: 437 KVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 V+ D + RSRGFGFVTY +EV+ A+ Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G +E +EV+ DR +G+ RGF FVT + V V Q Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 78.6 bits (192), Expect = 1e-14 Identities = 47/167 (28%), Positives = 78/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + + LF G +E ++V D++TG+S G+GFV ++ A+ Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + L Sbjct: 101 NGLRLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMTQKEL 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 67.4 bits (163), Expect = 3e-11 Identities = 65/245 (26%), Positives = 92/245 (37%), Gaps = 60/245 (24%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ +L LF Q G + ++ D++TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRVN--------------------------------- 256 E A++ NG G P+ V Sbjct: 175 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 234 Query: 257 -------------------SGPPPPR---DEFAPRTPRAMXXXXXXXSFDSANK---LYV 361 SGP PP F+P T M ++V Sbjct: 235 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFV 294 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 NLS D S L LF G V + KVI D ++ + +GFGFVT + DE AI++L+G Sbjct: 295 YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY 354 Query: 542 DLDGR 556 L R Sbjct: 355 RLGDR 359 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L LF G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 352 NGYRLGDRVLQVS 364
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 78.6 bits (192), Expect = 1e-14 Identities = 46/167 (27%), Positives = 77/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + + LF G +E ++V D++TG+S G+GFV + A+ Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P S AN LYV L + + Sbjct: 101 NGLKLQTKTIKVSYARP------------------SSASIRDAN-LYVSGLPKTMSQKEM 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E LFS+ G+++ ++++ D+ +G SRG GF+ + E AI L+G Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 66.2 bits (160), Expect = 6e-11 Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 54/239 (22%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P ++ R ++V LP T+ ++ LF Q G + ++ D++TG SRG GF+ Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRVNSGPPPPRD------------------------- 280 E A++ NG G P+ V P + Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234 Query: 281 -----------EFAPRTPRAMXXXXXXXSFDSANKL----------------YVGNLSWG 379 + ++P ++ + D + L +V NLS Sbjct: 235 QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE 294 Query: 380 VDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 D S L LF G V + KVI D + + +GFGFVT + DE AI++L+G L R Sbjct: 295 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGER 353 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL D + L LF G+V V+V+ D T + +GFGFVTM + +E A A+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 218 NGYTFQGRPLRVN 256 NGY R L+V+ Sbjct: 346 NGYRLGERVLQVS 358
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 78.6 bits (192), Expect = 1e-14 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 3/173 (1%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FE+ G++ V+ D T RSRGFGFVT VE Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX--XSFDSANKLYVG 364 EV AA+ RP +V+ P+ RA+ + + K++VG Sbjct: 88 EVDAAM--------CARPHKVDGRVVEPK--------RAVSREDSVKPGAHLTVKKIFVG 131 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + L + F + GK+ +V+ DR SG+ RGF FVT+ D V+ + Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Frame = +2 Query: 263 PPP--PRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDA 436 PPP P+ + R R + KL++G LS+ + +L F + G + D Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64 Query: 437 KVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 V+ D + RSRGFGFVTY +EV+ A+ Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE+ G +E +EV+ DR +G+ RGF FVT + V V Q Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 78.2 bits (191), Expect = 2e-14 Identities = 45/175 (25%), Positives = 82/175 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VGNL + L F+ G + ++++ D+ ++ + FV + A++ Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 134 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG + +++N S D L+VG+L+ VD+ TL Sbjct: 135 NGKQIENNIVKIN-----------------WAFQSQQSSSDDTFNLFVGDLNVNVDDETL 177 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 N F + L V++D +G SRG+GFV++ S D+ NA+ ++ G DL+GR + Sbjct: 178 RNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 232 Score = 56.6 bits (135), Expect = 5e-08 Identities = 29/80 (36%), Positives = 42/80 (52%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S+ +FVG+L VD L F+ S V++D TG SRG+GFV+ S ++ Sbjct: 156 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 215 Query: 197 AAAVEQFNGYTFQGRPLRVN 256 A++ G GRPLR+N Sbjct: 216 QNAMDSMQGQDLNGRPLRIN 235 Score = 38.9 bits (89), Expect = 0.010 Identities = 26/95 (27%), Positives = 39/95 (41%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 R + PR ++GN+P A L LF+ G + D +G F+ + E Sbjct: 333 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFG------FILDFKHYPEKGCCFIKYDTHE 386 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPR 295 + A + + FQGR LR G R F P+ Sbjct: 387 QAAVCIVALANFPFQGRNLRTGWG--KERSNFMPQ 419
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 78.2 bits (191), Expect = 2e-14 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVG+L + + + F G + VV D TG+S+G+GFV+ + + A++Q Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 218 NGYTFQGRPLRVN---SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 G GR +R N PP P+ + T + S + +Y G ++ G+ Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G++++ +V D +G+ FV + S + +AI +++G ++G + Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGTTIEGHVV 279 Score = 76.3 bits (186), Expect = 6e-14 Identities = 49/175 (28%), Positives = 85/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VGNL V A + LF Q G + +++ D T + + FV AAA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ ++VN P + + + F ++VG+LS + + Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFH----VFVGDLSPEITTEDI 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + F+ G++ DA+V+ D +G+S+G+GFV++ + + NAI + G L GRQI Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 78.2 bits (191), Expect = 2e-14 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 3/173 (1%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G + V+ D T RSRGFGFVT VE Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX--XSFDSANKLYVG 364 EV A++ RP +V+ P+ RA+ + + K++VG Sbjct: 80 EVDASM--------SARPHKVDGRVVEPK--------RAVSREDSARPGAHLTVKKIFVG 123 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + L + F GK+ +V+ DR SG+ RGF FVT+ D V+ + Sbjct: 124 GIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 53.5 bits (127), Expect = 4e-07 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L F + GK+ D V+ D + RSRGFGFVTY +EV+ Sbjct: 24 EQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 83 Query: 518 AIS 526 ++S Sbjct: 84 SMS 86 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/60 (38%), Positives = 32/60 (53%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FE G +E +EV+ DR +G+ RGF FVT + V V Q Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 78.2 bits (191), Expect = 2e-14 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 7/184 (3%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 L +FVG LP + S QL LF Q G V+ VV ++ + RGFG+VT +E+V A++ Sbjct: 3 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPR-------TPRAMXXXXXXXSFDSANKLYVGNL 370 + TF+G + V R++ + P+ D +L + NL Sbjct: 63 EIT--TFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNL 120 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLD 550 S+ L+ +F++ G VL+ + D G+ RGFGFV + + E A+ ++ ++ Sbjct: 121 SFKCSEDDLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIK 179 Query: 551 GRQI 562 GR + Sbjct: 180 GRTV 183 Score = 35.8 bits (81), Expect = 0.086 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++ + NL F L +F Q G+V V + + G+ RGFGFV ++ E A++ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 215 FNGYTFQGRPLRVN 256 N +GR + V+ Sbjct: 173 MNMKEIKGRTVAVD 186 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE------VA 199 VF+ NL F + +L L +Q G ++ V +V T S+G F + E A Sbjct: 336 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAA 395 Query: 200 AAVEQFNGYTFQGRPLRVN 256 + + G GR L+V+ Sbjct: 396 SPENEAGGLKLDGRQLKVD 414 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI--- 523 +++ NLS+ + L L + G++ +++ D+ S+G F + + + + Sbjct: 336 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAA 395 Query: 524 ---SNLDGVDLDGRQI 562 + G+ LDGRQ+ Sbjct: 396 SPENEAGGLKLDGRQL 411
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 77.8 bits (190), Expect = 2e-14 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 1/176 (0%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG L V + L L QAG V V + DR+T +GFGFV E+ A++ Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P++VN + D ++VGNL VD L Sbjct: 75 NMIKLYGKPIKVNK------------------ASAHEKNMDVGANIFVGNLDPEVDEKLL 116 Query: 398 ENLFSEQGKVLDA-KVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L K++ D DSG S+GF F+ + S + + A+ ++G L R I Sbjct: 117 YDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAI 172 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMV-EVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVGNL VD L F G + V +++ D +G S+GF F+ S E A+E Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 215 FNGYTFQGRPLRVN 256 NG R + V+ Sbjct: 162 MNGQFLCNRAITVS 175
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 77.8 bits (190), Expect = 2e-14 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 1/177 (0%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L ++ L F Q G V ++ D+ T +SRGFGFV V + Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRT-PRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 +T GR ++ P PR RT P+ +NK++VG + + Sbjct: 71 -RPHTLDGR--NIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F + G V + +IYD + R RGFGF+T+ V+ A+ N+ D+ G+++ Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKV 183 Score = 57.4 bits (137), Expect = 3e-08 Identities = 28/75 (37%), Positives = 43/75 (57%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL+VG L W TL + FS+ G+V+D ++ D+ + +SRGFGFV + + V Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66 Query: 518 AISNLDGVDLDGRQI 562 +++ LDGR I Sbjct: 67 VLASRPHT-LDGRNI 80 Score = 53.5 bits (127), Expect = 4e-07 Identities = 31/100 (31%), Positives = 46/100 (46%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 PR + + K+FVG +P +L F++ G V V ++YD R RGFGF+T Sbjct: 105 PRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRA 307 + V AV + + G+ + V P AP P A Sbjct: 165 QSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGA 203
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 77.4 bits (189), Expect = 3e-14 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 1/177 (0%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L ++ L F Q G V ++ D+ T +SRGFGFV V + Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRT-PRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 +T GR ++ P PR RT P+ +NK++VG + + Sbjct: 71 -RPHTLDGR--NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F + G V + +IYD + R RGFGF+T+ V+ A+ N+ D+ G+++ Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKV 183 Score = 57.4 bits (137), Expect = 3e-08 Identities = 28/75 (37%), Positives = 43/75 (57%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL+VG L W TL + FS+ G+V+D ++ D+ + +SRGFGFV + + V Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66 Query: 518 AISNLDGVDLDGRQI 562 +++ LDGR I Sbjct: 67 VLASRPHT-LDGRNI 80 Score = 53.1 bits (126), Expect = 5e-07 Identities = 31/100 (31%), Positives = 45/100 (45%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 PR + K+FVG +P +L F++ G V V ++YD R RGFGF+T Sbjct: 105 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRA 307 + V AV + + G+ + V P AP P A Sbjct: 165 QSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 76.3 bits (186), Expect = 6e-14 Identities = 51/175 (29%), Positives = 84/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L +V A L +F GSV + V D +T S G+ +V E A+EQ Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N +GR R+ ++ R P + +++ NL +DN L Sbjct: 99 NYTPIKGRLCRI---------MWSQRDPSLRK--------KGSGNIFIKNLHPDIDNKAL 141 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L +K+ D ++G+S+GFGFV + AI L+G+ L+G++I Sbjct: 142 YDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 195 Score = 64.3 bits (155), Expect = 2e-10 Identities = 44/175 (25%), Positives = 77/175 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL +D+ L F G + ++ D G+S+GFGFV A++ Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 185 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V AP R + LYV N++ + Sbjct: 186 NGMLLNGQEIYV-----------APHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQF 234 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + LF++ G ++ A + D D G+ +GFGFV Y ++ A+ L+ +L+G ++ Sbjct: 235 QELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL 288 Score = 62.4 bits (150), Expect = 9e-10 Identities = 45/163 (27%), Positives = 69/163 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++V N+ Q LF + G + + D G+ +GFGFV E+ AVE Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G L V + + N L+V NL VD+ L Sbjct: 279 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN-LFVKNLDDSVDDEKL 337 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 E F+ G + AKV+ ++G+S+GFGFV + + +E AI+ Sbjct: 338 EEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAIT 379 Score = 43.5 bits (101), Expect = 4e-04 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + +FV NL +VD +L F G++ +V+ G+S+GFGFV + EE A+ Sbjct: 321 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAIT 379 Query: 212 QFNGYTFQGRPLRV 253 + N G+PL V Sbjct: 380 EKNQQIVAGKPLYV 393 Score = 38.5 bits (88), Expect = 0.013 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 +S+ LYVG+L V + L ++FS G V +V D + S G+ +V + + Sbjct: 34 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 93 Query: 518 AISNLDGVDLDGR 556 AI L+ + GR Sbjct: 94 AIEQLNYTPIKGR 106
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 76.3 bits (186), Expect = 6e-14 Identities = 45/172 (26%), Positives = 75/172 (43%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G + ++ D TG S G+GFV GS + A+ Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG T + + ++V+ P LYV NLS + + L Sbjct: 140 NGITVRNKRIKVSFARPGGEQL-------------------RDTNLYVTNLSRSITDEQL 180 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 E +F + G+++ ++ D+ +G RG F+ + +E AIS L+ V +G Sbjct: 181 ETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEG 232 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/75 (30%), Positives = 41/75 (54%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 +S L V L + + L +LF G + +++ D +G S G+GFV +GS + Sbjct: 75 NSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALR 134 Query: 518 AISNLDGVDLDGRQI 562 AI+NL+G+ + ++I Sbjct: 135 AINNLNGITVRNKRI 149
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 76.3 bits (186), Expect = 6e-14 Identities = 33/71 (46%), Positives = 51/71 (71%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 + +VG L+W ++ LE FS+ G+V+D+K+I DR++GRSRGFGFVT+ + +AI Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 530 LDGVDLDGRQI 562 ++G +LDGR I Sbjct: 67 MNGKELDGRTI 77 Score = 60.5 bits (145), Expect = 3e-09 Identities = 30/74 (40%), Positives = 42/74 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + A+L F Q G V +++ DR TGRSRGFGFVT + + A+++ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 67 MNGKELDGRTITVN 80
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 75.9 bits (185), Expect = 7e-14 Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 3/173 (1%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P P L K+F+G L F L FEQ G + V+ D T RSRGFGFVT VE Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX--XSFDSANKLYVG 364 EV A++ RP +V+ P+ RA+ + + K++VG Sbjct: 80 EVDASM--------SARPHKVDGRVVEPK--------RAVSREDSARPGAHLTVKKIFVG 123 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + L + GK+ +V+ DR SG+ RGF FVT+ D V+ + Sbjct: 124 GIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 53.5 bits (127), Expect = 4e-07 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L F + GK+ D V+ D + RSRGFGFVTY +EV+ Sbjct: 24 EQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 83 Query: 518 AIS 526 ++S Sbjct: 84 SMS 86 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L E G +E +EV+ DR +G+ RGF FVT + V V Q Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 75.9 bits (185), Expect = 7e-14 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 3/173 (1%) Frame = +2 Query: 14 PSTPRXL-KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ P L K+F+G L F L FEQ G++ V+ D + RSRGFGFVT S + Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX--XSFDSANKLYVG 364 EV AA+ RP +V+ P+ RA+ + + K++VG Sbjct: 67 EVDAAM--------TARPHKVDGRVVEPK--------RAVSREDSSRPGAHLTVKKIFVG 110 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + L F + GK+ +++ DR SG+ RGF FVT+ D V+ + Sbjct: 111 GIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/63 (42%), Positives = 40/63 (63%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G LS+ + +L F + G + D V+ D +S RSRGFGFVTY S DEV+ Sbjct: 11 EQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDA 70 Query: 518 AIS 526 A++ Sbjct: 71 AMT 73 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG + + L FEQ G +E++E++ DR +G+ RGF FVT + V V Q Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 75.5 bits (184), Expect = 1e-13 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVT------MGSVEEV 196 K+FVG L ++ L F Q G V ++ D+ T +SRGFGFV +G+V + Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV--L 68 Query: 197 AAAVEQFNGYTFQGRPLRVNSGPPP---PRDEFAPRTPRAMXXXXXXXSFDSANKLYVGN 367 A+ +G +P P PR+ + + PR +NK++VG Sbjct: 69 ASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSR--------SNKIFVGG 120 Query: 368 LSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 + + L+ F+ G V + +IYD + R RGFGF+T+ V+ A+ N+ D+ Sbjct: 121 IPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDI 179 Query: 548 DGRQI 562 G+++ Sbjct: 180 MGKKV 184 Score = 57.4 bits (137), Expect = 3e-08 Identities = 28/75 (37%), Positives = 43/75 (57%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL+VG L W TL + FS+ G+V+D ++ D+ + +SRGFGFV + + V Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66 Query: 518 AISNLDGVDLDGRQI 562 +++ LDGR I Sbjct: 67 VLASRPHT-LDGRNI 80 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/98 (30%), Positives = 42/98 (42%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 PR R K+FVG +P +L F + G V V ++YD R RGFGF+T Sbjct: 106 PRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDE 165 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTP 301 + V AV + + G+ + V P P P Sbjct: 166 QSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQTPGPP 202
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 75.5 bits (184), Expect = 1e-13 Identities = 32/71 (45%), Positives = 50/71 (70%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 + +VG L+W ++ +LE FS+ G + D+K+I DR++GRSRGFGFVT+ + +AI Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 530 LDGVDLDGRQI 562 ++G +LDGR I Sbjct: 67 MNGQELDGRNI 77 Score = 58.5 bits (140), Expect = 1e-08 Identities = 29/74 (39%), Positives = 40/74 (54%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + + L F Q G + +++ DR TGRSRGFGFVT + + A+E Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 67 MNGQELDGRNITVN 80
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/167 (25%), Positives = 78/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G VE +++ D++ G S G+GFV + ++ A+ Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P AN LY+ L + + Sbjct: 82 NGLRLQSKTIKVSYARP------------------SSEVIKDAN-LYISGLPRTMTQKDV 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E++FS G++++++V+ D+ +G SRG F+ + E AI++ +G Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169 Score = 64.3 bits (155), Expect = 2e-10 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 33/215 (15%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P + +++ LP T+ + +F + G + V+ D+ TG SRG F+ Sbjct: 96 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155 Query: 182 SVEEVAAAVEQFNGYTFQGR---------------------------PLRVNSGP---PP 271 E A+ FNG+ G P R GP Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQA 215 Query: 272 PRDEFAPRTPRAMXXXXXXXSFDSANK---LYVGNLSWGVDNSTLENLFSEQGKVLDAKV 442 R F+P M +A+ +++ NL D L +F G V + KV Sbjct: 216 QRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 275 Query: 443 IYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 I D ++ + +GFGFVT + +E AI++L+G L Sbjct: 276 IRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRL 310 Score = 52.4 bits (124), Expect = 9e-07 Identities = 28/73 (38%), Positives = 41/73 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL D L +F G+V V+V+ D T + +GFGFVTM + EE A A+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 218 NGYTFQGRPLRVN 256 NGY + L+V+ Sbjct: 306 NGYRLGDKILQVS 318 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/70 (38%), Positives = 40/70 (57%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V L + L +LFS G+V AK+I D+ +G S G+GFV Y +A + AI+ L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 533 DGVDLDGRQI 562 +G+ L + I Sbjct: 82 NGLRLQSKTI 91
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 75.1 bits (183), Expect = 1e-13 Identities = 33/71 (46%), Positives = 50/71 (70%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 + +VG L+W ++ L+ FS+ G V+D+K+I DR+SGRSRGFGFVT+ + +AI Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 530 LDGVDLDGRQI 562 ++G +LDGR I Sbjct: 67 MNGKELDGRVI 77 Score = 57.4 bits (137), Expect = 3e-08 Identities = 29/74 (39%), Positives = 41/74 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 + FVG L + + L F Q G V +++ DR +GRSRGFGFVT + + A+E+ Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 215 FNGYTFQGRPLRVN 256 NG GR + VN Sbjct: 67 MNGKELDGRVITVN 80
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 75.1 bits (183), Expect = 1e-13 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V+V N D +L FE G + +V+ + G+S+GFGFV + E AAV+ Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 218 NGYTF-QGRPLRV-NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 NG +G+ L V + R + R + F LYV NL +D+ Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGV--NLYVKNLDDTIDDD 301 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 L FS G + AKV+ D + GRS+GFGFV + +A E A++ L+G Sbjct: 302 RLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNG 349 Score = 73.2 bits (178), Expect = 5e-13 Identities = 45/175 (25%), Positives = 84/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+LP V+ + L F AG V + V D +T RS G+ +V + A++ Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N + +P+R+ ++ R P +++ NL +DN + Sbjct: 64 NFDLVRNKPIRI---------MWSQRDPSLRR--------SGVGNVFIKNLDRAIDNKAI 106 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G +L KV D + G S+G+GFV + + + N +I ++G+ L+G+++ Sbjct: 107 YDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160 Score = 72.4 bits (176), Expect = 8e-13 Identities = 46/170 (27%), Positives = 80/170 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF+ NL +D+ + F G++ +V D G S+G+GFV + E ++++ Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKV 150 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V +F PR R F + +YV N + D+ L Sbjct: 151 NGMLLNGKKVYVG--------KFIPRKEREKELGEKAKLFTN---VYVKNFTEDFDDEKL 199 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 + F GK+ KV+ ++ G+S+GFGFV + + + A+ L+G D+ Sbjct: 200 KEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDM 248 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL T+D +L F G++ +V+ D GRS+GFGFV + E AV Sbjct: 287 VNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVT 345 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 346 ELNGRVVGSKPLYV 359
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 74.7 bits (182), Expect = 2e-13 Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 1/178 (0%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P + + + F+ N+PF V L L E+ G V VE++ D G+SRG V Sbjct: 61 PYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKM 119 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVG 364 E + A E N ++ GRPL+V P RAM S ++V Sbjct: 120 EESMKKAAEVLNKHSLSGRPLKVKEDPD------GEHARRAMQKAGRLGS-----TVFVA 168 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 NL + V L+ +FS G V+ A ++ D+D G+SRG G VT+ + E AIS +G Sbjct: 169 NLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNG 225 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV NL + V +L +F AG V +++ D+ G+SRG G VT E A+ F Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 223 Query: 218 NGYTFQGRPLRV--NSGPPPPRDEFAPRTPRAM 310 NG RP+ V + P D F P P+ + Sbjct: 224 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQL 256 Score = 38.5 bits (88), Expect = 0.013 Identities = 23/73 (31%), Positives = 41/73 (56%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 A +++V NL + L++ F+E G VL A + ++G+S+G G V + S + A Sbjct: 611 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERAC 668 Query: 524 SNLDGVDLDGRQI 562 ++G+ L GR+I Sbjct: 669 RMMNGMKLSGREI 681 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/76 (30%), Positives = 33/76 (43%) Frame = +2 Query: 26 RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAA 205 + ++FV NLPF L F + G V ++ + G+S+G G V S E A Sbjct: 610 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERA 667 Query: 206 VEQFNGYTFQGRPLRV 253 NG GR + V Sbjct: 668 CRMMNGMKLSGREIDV 683
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 74.7 bits (182), Expect = 2e-13 Identities = 48/167 (28%), Positives = 80/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 V++ N ++ +L +F + G V+V+ D G+S+GFGFV+ E+ AV++ Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G+ + V + + + N LYV NL G+D+ L Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 F G + AKV+ + GRS+GFGFV + S +E A++ ++G Sbjct: 311 RKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355 Score = 74.7 bits (182), Expect = 2e-13 Identities = 46/175 (26%), Positives = 85/175 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L F G++ +VV D S+G+GFV + E A+++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V F R R F + +Y+ N +++ L Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEFTN---VYIKNFGDDMNDERL 207 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + +F + G L KV+ D D+G+S+GFGFV++ ++ A+ ++G D++G+ + Sbjct: 208 KEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261 Score = 72.8 bits (177), Expect = 6e-13 Identities = 49/183 (26%), Positives = 84/183 (45%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 PS P ++VG+L V A L F AG + + V D +T RS G+ +V + Sbjct: 6 PSYPMA-SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64 Query: 194 VAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 A++ N +GRP+R+ ++ R P +++ NL Sbjct: 65 AERALDTMNFDVIKGRPVRI---------MWSQRDPSLRK--------SGVGNIFIKNLD 107 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 +DN L + FS G +L KV+ D + S+G+GFV + + + AI ++G+ L+ Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLND 165 Query: 554 RQI 562 R++ Sbjct: 166 RKV 168 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S EE AV Sbjct: 294 VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 212 QFNGYTFQGRPLRV 253 + NG +PL V Sbjct: 352 EMNGRIVATKPLYV 365
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 74.3 bits (181), Expect = 2e-13 Identities = 42/167 (25%), Positives = 77/167 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G VE +++ D++ G S G+GFV + ++ A+ Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG Q + ++V+ P AN LY+ L + + Sbjct: 82 NGLRLQSKTIKVSYARP------------------SSEVIKDAN-LYISGLPRTMTQKDV 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 E++FS G++++++V+ D+ +G SRG F+ + E AI++ G Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169 Score = 60.1 bits (144), Expect = 4e-09 Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 33/215 (15%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P + +++ LP T+ + +F + G + V+ D+ TG SRG F+ Sbjct: 96 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155 Query: 182 SVEEVAAAVEQFNGYTFQGR---------------------------PLRVNSGP---PP 271 E A+ F G+ G P R GP Sbjct: 156 KRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQA 215 Query: 272 PRDEFAPRTPRAMXXXXXXXSFDSANK---LYVGNLSWGVDNSTLENLFSEQGKVLDAKV 442 R F+P M +A+ +++ NL D L +F G V + KV Sbjct: 216 QRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 275 Query: 443 IYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 I D ++ + +GFGFVT + +E AI++L+G L Sbjct: 276 IRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRL 310 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/73 (38%), Positives = 41/73 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL D L +F G+V V+V+ D T + +GFGFVTM + EE A A+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 218 NGYTFQGRPLRVN 256 NGY + L+V+ Sbjct: 306 NGYRLGDKILQVS 318 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/70 (40%), Positives = 40/70 (57%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V L + L +LFS G+V AK+I D+ +G S G+GFV Y +A + AIS L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 533 DGVDLDGRQI 562 +G+ L + I Sbjct: 82 NGLRLQSKTI 91
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 73.6 bits (179), Expect = 4e-13 Identities = 46/173 (26%), Positives = 77/173 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF L + L F G V V ++ DR + RS+G +V ++ V A+ Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 226 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 G G P+ V + A + A +LYVG+L + + L Sbjct: 227 TGQRLLGVPIIVQASQ-------AEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML 279 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F GK+ + ++ D D+GRS+G+GF+T+ ++ A+ L+G +L GR Sbjct: 280 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 332 Score = 67.4 bits (163), Expect = 3e-11 Identities = 29/74 (39%), Positives = 47/74 (63%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 ++++VG+L F + L G+FE G ++ + ++ D TGRS+G+GF+T E A+E Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322 Query: 212 QFNGYTFQGRPLRV 253 Q NG+ GRP+RV Sbjct: 323 QLNGFELAGRPMRV 336
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 73.6 bits (179), Expect = 4e-13 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 1/177 (0%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L + L+ F + G + V+ + +GRSRGFGFVT V ++ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ- 66 Query: 215 FNG-YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 NG +T GR + + P PR + + K+++G L V + Sbjct: 67 -NGPHTLDGRTI-----------DPKPCNPRTLQKPKKGGGY----KVFLGGLPSNVTET 110 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F+ GKV + ++YD++ +SRGFGF+++ V + ++N ++L+G+Q+ Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQV 166 Score = 62.4 bits (150), Expect = 9e-10 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL+VG LSW L F G ++D V+ + +SGRSRGFGFVT+ VN+ Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH 63 Query: 518 AISN----LDGVDLD 550 + N LDG +D Sbjct: 64 VLQNGPHTLDGRTID 78 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 12/75 (16%) Frame = +2 Query: 8 PRPSTPRXL---------KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRG 160 P+P PR L KVF+G LP V L F + G V V ++YD+ +SRG Sbjct: 79 PKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRG 138 Query: 161 FGFVTM---GSVEEV 196 FGF++ SVE V Sbjct: 139 FGFLSFEEESSVEHV 153
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 73.2 bits (178), Expect = 5e-13 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 8/185 (4%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 L +FVG LP + S QL LF Q G V+ VV ++ + RGFG+VT +E+V A++ Sbjct: 3 LTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 212 QFNGYTFQGRPLRV--------NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGN 367 + TF+G + V N ++E A +P+ D +L + N Sbjct: 63 EIT--TFEGCKIDVTVAKKKLRNKSKETRKNENA-ESPKKEPKHKKAKVADKKARLIIRN 119 Query: 368 LSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 LS+ L+ +F+ G VL+ I + G+ RGF FV + + E A+ + ++ Sbjct: 120 LSFKCSEDDLKAVFTHYGTVLEVN-IPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEI 178 Query: 548 DGRQI 562 GR + Sbjct: 179 KGRTV 183 Score = 32.3 bits (72), Expect = 0.95 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFG---FVTMGSVEEVAAAV 208 VF+ NL F + L + +Q G ++ V VV T S+G F+T + ++ AA Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 209 E---QFNGYTFQGRPLRVN 256 + G GR L+V+ Sbjct: 386 SPEAEGGGLKLDGRQLKVD 404 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++ + NL F L +F G+V V + + G+ RGF FV ++ E A++ Sbjct: 114 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKG 172 Query: 215 FNGYTFQGRPLRVN 256 N +GR + V+ Sbjct: 173 ANMKEIKGRTVAVD 186 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +++ NLS+ + L + + G + +V+ D+ S+G F + + + ++ Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 533 D------GVDLDGRQI 562 G+ LDGRQ+ Sbjct: 386 SPEAEGGGLKLDGRQL 401
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 72.0 bits (175), Expect = 1e-12 Identities = 46/173 (26%), Positives = 76/173 (43%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF L + L F G V V ++ DR + RSRG +V V V A+ Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIG-L 213 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 G G P+ V + A + A +LYVG+L + + L Sbjct: 214 TGQRVLGVPIIVQASQ-------AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDML 266 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F G++ +++ D ++GRS+G+GF+T+ ++ A+ L+G +L GR Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319 Score = 69.7 bits (169), Expect = 5e-12 Identities = 29/74 (39%), Positives = 48/74 (64%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 ++++VG+L F + L G+FE G +E ++++ D TGRS+G+GF+T E A+E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 212 QFNGYTFQGRPLRV 253 Q NG+ GRP++V Sbjct: 310 QLNGFELAGRPMKV 323
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 71.6 bits (174), Expect = 1e-12 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 3/190 (1%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 ++ + T VFVG+L + + + F G + VV D TG+S+G+GFV+ Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVN---SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK 352 + + A+ G GR +R N PP P+ T + S Sbjct: 164 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCT 223 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +Y G ++ G+ + + FS G++++ +V + +G+ FV + + + +AI ++ Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277 Query: 533 DGVDLDGRQI 562 +G ++G + Sbjct: 278 NGTTIEGHVV 287 Score = 68.9 bits (167), Expect = 9e-12 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 17/197 (8%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGR----SRGFG-------- 166 PR L +VGNL V + LF Q G + +++ ++ R S GF Sbjct: 8 PRTL--YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65 Query: 167 ---FVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSF 337 FV + AAA+ NG G+ ++VN P + Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK----------------- 108 Query: 338 DSANK--LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 D++N ++VG+LS + +++ F+ GK+ DA+V+ D +G+S+G+GFV++ + + Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168 Query: 512 NNAISNLDGVDLDGRQI 562 NAI ++ G L GRQI Sbjct: 169 ENAIVHMGGQWLGGRQI 185
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 71.2 bits (173), Expect = 2e-12 Identities = 50/172 (29%), Positives = 81/172 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FVGNL + L F Q G V +++ R G RG G V + ++V A+ Q+ Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G F R + V PPP + R +A+ + +++ V NL V+ L Sbjct: 196 DGAFFMDRKIFVRQDNPPPSNNIKER--KALDRGELRHN-RKTHEVIVKNLPASVNWQAL 252 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 +++F E G V A V D D G S G G V++ +++ AI +G ++G Sbjct: 253 KDIFKECGNVAHADVELDGD-GVSTGSGTVSFYDIKDLHRAIEKYNGYSIEG 303 Score = 66.6 bits (161), Expect = 5e-11 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 17/189 (8%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V V NLP +V+ L +F++ G+V +V D G S G G V+ ++++ A+E+ Sbjct: 237 EVIVKNLPASVNWQALKDIFKECGNVAHADVELDG-DGVSTGSGTVSFYDIKDLHRAIEK 295 Query: 215 FNGYTFQGRPLRVNSGPPP-----------PRDEFAPRTPRAMXXXXXXXSFDSANKL-Y 358 +NGY+ +G L V S P D+ +P A N+L Y Sbjct: 296 YNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDD-SPVNEEARKFTENVVGGGERNRLIY 354 Query: 359 VGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLD- 535 NL + S L +LF GKV +A++ YD G G V Y + D+ + I L+ Sbjct: 355 CSNLPFSTAKSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVVEYDNVDDADVCIERLNN 413 Query: 536 ----GVDLD 550 G DLD Sbjct: 414 YNYGGCDLD 422 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 +N ++VGNL++ L FS+ GKV+ A +I R G RG G V + ++D+V+ AI Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAI 192 Query: 524 SNLDGVDLDGRQI 562 DG R+I Sbjct: 193 RQYDGAFFMDRKI 205
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 71.2 bits (173), Expect = 2e-12 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 3/190 (1%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 ++ + T VFVG+L + + + F G + VV D TG+S+G+GFV+ Sbjct: 87 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 146 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVN---SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK 352 + + A+ G GR +R N PP P+ T + S Sbjct: 147 NKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCT 206 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +Y G ++ G+ + + FS G++++ +V + +G+ FV + + + +AI ++ Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260 Query: 533 DGVDLDGRQI 562 +G ++G + Sbjct: 261 NGTTIEGHVV 270 Score = 70.9 bits (172), Expect = 2e-12 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 2/182 (1%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAA 202 PR L +VGNL V + LF Q G + +++ + + + FV + AA Sbjct: 8 PRTL--YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAA 63 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK--LYVGNLSW 376 A+ NG G+ ++VN P + D++N ++VG+LS Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKK-----------------DTSNHFHVFVGDLSP 106 Query: 377 GVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + +++ F+ GK+ DA+V+ D +G+S+G+GFV++ + + NAI ++ G L GR Sbjct: 107 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 166 Query: 557 QI 562 QI Sbjct: 167 QI 168
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 70.9 bits (172), Expect = 2e-12 Identities = 47/172 (27%), Positives = 75/172 (43%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G + ++ D TG S G+ FV S + A++ Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG T + + L+V+ P S N LYV NL + + L Sbjct: 164 NGITVRNKRLKVSYARP------------------GGESIKDTN-LYVTNLPRTITDDEL 204 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 E +F + G ++ ++ D+ +GR RG FV + +E AIS L+ V +G Sbjct: 205 EKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEG 256 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P + + ++V NLP T+ +L +F + G++ ++ D++TGR RG FV Sbjct: 178 ARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFN 237 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV 253 EE A+ N +G +PL V Sbjct: 238 KREEAQEAISALNNVIPEGASQPLTV 263
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 70.9 bits (172), Expect = 2e-12 Identities = 34/79 (43%), Positives = 49/79 (62%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 + ++VGNL + V A L +F + GSV+ V++ DR TGR RGFGFV + + E AA+E Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60 Query: 212 QFNGYTFQGRPLRVNSGPP 268 +G + GR L+VN P Sbjct: 61 ALDGAEWMGRDLKVNKAKP 79 Score = 57.4 bits (137), Expect = 3e-08 Identities = 30/70 (42%), Positives = 42/70 (60%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +YVGNLS+ V + L +F+E G V ++ DR++GR RGFGFV + E AI L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 533 DGVDLDGRQI 562 DG + GR + Sbjct: 63 DGAEWMGRDL 72
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 70.9 bits (172), Expect = 2e-12 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 1/167 (0%) Frame = +2 Query: 14 PSTPRX-LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P +P K+F+G L + L F Q G V+ V+ D +T RSRGFGFVT Sbjct: 13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 V + Q ++S P+ F R M K++VG L Sbjct: 73 GVDKVLAQSRH--------ELDSKTIDPKVAFPRRAQPKMVTRT--------KKIFVGGL 116 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S +++ F + GKV DA +++D+ + R RGFGFVT+ S D V Sbjct: 117 SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV 163 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +2 Query: 2 ATPRPSTP----RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 A PR + P R K+FVG L + FEQ G V+ +++D+ T R RGFGF Sbjct: 95 AFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGF 154 Query: 170 VTMGSVEEVAAAVE 211 VT S + V E Sbjct: 155 VTFESEDIVEKVCE 168
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 70.9 bits (172), Expect = 2e-12 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 1/167 (0%) Frame = +2 Query: 14 PSTPRX-LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P +P K+F+G L + L F Q G V+ V+ D +T RSRGFGFVT Sbjct: 13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 V + Q ++S P+ F R M K++VG L Sbjct: 73 GVDKVLAQSRH--------ELDSKTIDPKVAFPRRAQPKMVTRT--------KKIFVGGL 116 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S +++ F + GKV DA +++D+ + R RGFGFVT+ S D V Sbjct: 117 SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV 163 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +2 Query: 2 ATPRPSTP----RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 A PR + P R K+FVG L + FEQ G V+ +++D+ T R RGFGF Sbjct: 95 AFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGF 154 Query: 170 VTMGSVEEVAAAVE 211 VT S + V E Sbjct: 155 VTFESEDIVEKVCE 168
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 70.9 bits (172), Expect = 2e-12 Identities = 45/173 (26%), Positives = 76/173 (43%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VF L + L F G V V ++ DR + RS+G +V V V A+ Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-L 213 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 G G P+ V + A + A +LYVG+L + + L Sbjct: 214 TGQRVLGVPIIVQASQ-------AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDML 266 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +F G++ +++ D ++GRS+G+GF+T+ ++ A+ L+G +L GR Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319 Score = 69.7 bits (169), Expect = 5e-12 Identities = 29/74 (39%), Positives = 48/74 (64%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 ++++VG+L F + L G+FE G +E ++++ D TGRS+G+GF+T E A+E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 212 QFNGYTFQGRPLRV 253 Q NG+ GRP++V Sbjct: 310 QLNGFELAGRPMKV 323
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 70.9 bits (172), Expect = 2e-12 Identities = 53/162 (32%), Positives = 76/162 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L G FE G++ VV + T RSR FGFVT +VEE AA+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + + G + + R++ A A KL+VG L V Sbjct: 68 -SPHAVDGNTVELKRAVS--REDSARPGAHA-----------KVKKLFVGGLKGDVAEGD 113 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 L FS+ G V A++I D+ SG+ RGFGFV + + D + A Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/59 (35%), Positives = 33/59 (55%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 KL++G L+ S L F G + D V+ + + RSR FGFVTY + +E + A++ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 70.5 bits (171), Expect = 3e-12 Identities = 53/167 (31%), Positives = 75/167 (44%), Gaps = 1/167 (0%) Frame = +2 Query: 14 PSTPRX-LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P +P K+F+G L + L F Q G V+ V+ D +T RSRGFGFVT Sbjct: 13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 V + Q ++S P+ F R M K++VG L Sbjct: 73 GVDKVLAQSRH--------ELDSKTIDPKVAFPRRAQPKMVTRT--------KKIFVGGL 116 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S ++ F + GKV DA +++D+ + R RGFGFVT+ S D V Sbjct: 117 SVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV 163 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +2 Query: 2 ATPRPSTP----RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 A PR + P R K+FVG L + FEQ G V+ +++D+ T R RGFGF Sbjct: 95 AFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGF 154 Query: 170 VTMGSVEEVAAAVE 211 VT S + V E Sbjct: 155 VTFESEDIVEKVCE 168
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 70.1 bits (170), Expect = 4e-12 Identities = 31/71 (43%), Positives = 51/71 (71%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG LS+ + +LE +FS+ G++ + V+ DR++ RSRGFGFVT+ + D+ +A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 530 LDGVDLDGRQI 562 ++G +DGRQI Sbjct: 67 MNGKSVDGRQI 77 Score = 61.6 bits (148), Expect = 1e-09 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F + L +F + G + V VV DR T RSRGFGFVT ++++ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGKSVDGRQIRVD 80
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.1 bits (170), Expect = 4e-12 Identities = 31/71 (43%), Positives = 51/71 (71%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG LS+ + +LE +FS+ G++ + V+ DR++ RSRGFGFVT+ + D+ +A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 530 LDGVDLDGRQI 562 ++G +DGRQI Sbjct: 67 MNGKSVDGRQI 77 Score = 61.6 bits (148), Expect = 1e-09 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F + L +F + G + V VV DR T RSRGFGFVT ++++ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGKSVDGRQIRVD 80
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 70.1 bits (170), Expect = 4e-12 Identities = 47/160 (29%), Positives = 73/160 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L FEQ G + V V+ D T RSRGFGF+T V A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ-- 75 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 RP +V+ P+ PRT + KL+VG + ++ + Sbjct: 76 ------NARPHKVDGRVVEPK-RAVPRTEIGRPEAGA-----TVKKLFVGGIKEEMEEND 123 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVN 514 L + F + G V+ A ++ D+++ + RGF FV + D V+ Sbjct: 124 LRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVD 163 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/75 (34%), Positives = 44/75 (58%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G L + + +L+ F + G+++D V+ D + RSRGFGF+TY A V++ Sbjct: 14 EHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDD 73 Query: 518 AISNLDGVDLDGRQI 562 A N +DGR + Sbjct: 74 A-QNARPHKVDGRVV 87
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 70.1 bits (170), Expect = 4e-12 Identities = 49/163 (30%), Positives = 74/163 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L + + Q G + + V+ D T RSRGFGFVT EV AA++Q Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 RP ++ P+ PR + S S +LYV + Sbjct: 84 --------RPHIIDGKTVDPK-RAVPRDDK-----NRSESNVSTKRLYVSGVREDHTEDM 129 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L F++ G V +++I D+ + + RGFGFVT+ D V+ + Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 ++ K++VG L+ + + +S+ G++ D V+ D + RSRGFGFVT+ EV+ Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79 Query: 518 AISN----LDGVDLDGRQ 559 A+ +DG +D ++ Sbjct: 80 AMKQRPHIIDGKTVDPKR 97 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +2 Query: 80 LAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 L F + G+V E++ D+ T + RGFGFVT + V V Q Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 70.1 bits (170), Expect = 4e-12 Identities = 47/172 (27%), Positives = 75/172 (43%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G + ++ D TG S G+ FV S + A++ Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 188 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG T + + L+V+ P S N LYV NL + + L Sbjct: 189 NGITVRNKRLKVSYARP------------------GGESIKDTN-LYVTNLPRTITDDQL 229 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + +F + G ++ ++ D+ +GR RG FV Y +E AIS L+ V +G Sbjct: 230 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 281 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P + + ++V NLP T+ QL +F + GS+ ++ D++TGR RG FV Sbjct: 203 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 262 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV 253 EE A+ N +G +PL V Sbjct: 263 KREEAQEAISALNNVIPEGGSQPLSV 288
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 70.1 bits (170), Expect = 4e-12 Identities = 47/172 (27%), Positives = 75/172 (43%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V LP + +L LF G + ++ D TG S G+ FV S + A++ Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG T + + L+V+ P S N LYV NL + + L Sbjct: 187 NGITVRNKRLKVSYARP------------------GGESIKDTN-LYVTNLPRTITDDQL 227 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + +F + G ++ ++ D+ +GR RG FV Y +E AIS L+ V +G Sbjct: 228 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 279 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P + + ++V NLP T+ QL +F + GS+ ++ D++TGR RG FV Sbjct: 201 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 260 Query: 182 SVEEVAAAVEQFNGYTFQG--RPLRV 253 EE A+ N +G +PL V Sbjct: 261 KREEAQEAISALNNVIPEGGSQPLSV 286
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 69.7 bits (169), Expect = 5e-12 Identities = 31/71 (43%), Positives = 50/71 (70%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG LS+ + LE +FS+ G++ + V+ DR++ RSRGFGFVT+ + D+ +A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 530 LDGVDLDGRQI 562 ++G +DGRQI Sbjct: 67 MNGKSVDGRQI 77 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F + L +F + G + V VV DR T RSRGFGFVT ++++ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGKSVDGRQIRVD 80
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 69.7 bits (169), Expect = 5e-12 Identities = 31/71 (43%), Positives = 50/71 (70%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG LS+ + LE +FS+ G++ + V+ DR++ RSRGFGFVT+ + D+ +A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 530 LDGVDLDGRQI 562 ++G +DGRQI Sbjct: 67 MNGKSVDGRQI 77 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F + L +F + G + V VV DR T RSRGFGFVT ++++ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGKSVDGRQIRVD 80
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 69.7 bits (169), Expect = 5e-12 Identities = 31/71 (43%), Positives = 50/71 (70%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG LS+ + LE +FS+ G++ + V+ DR++ RSRGFGFVT+ + D+ +A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 530 LDGVDLDGRQI 562 ++G +DGRQI Sbjct: 67 MNGKSVDGRQI 77 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F + L +F + G + V VV DR T RSRGFGFVT ++++ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGKSVDGRQIRVD 80
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 69.7 bits (169), Expect = 5e-12 Identities = 44/163 (26%), Positives = 75/163 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L FE+ G++ V V+ D T RSRGFGF+T + A ++ Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-QK 90 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + GR + P +D +P + KL+VG L D + Sbjct: 91 SRPHKIDGRVVEPKRA-VPRQDIDSPNAGA------------TVKKLFVGALKDDHDEQS 137 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + + F G ++D ++ D+++G+ RGF FV + D V+ + Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 180 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/83 (28%), Positives = 38/83 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L D + F+ G++ + +V D+ TG+ RGF FV + V V Q Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 215 FNGYTFQGRPLRVNSGPPPPRDE 283 + G+ + V P D+ Sbjct: 183 -KQHQLNGKMVDVKKALPKQNDQ 204
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 69.3 bits (168), Expect = 7e-12 Identities = 49/159 (30%), Positives = 73/159 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L F + G + V+ D T RSRGFGFVT A+V++ Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD----PASVDK 77 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 G ++S P+ F R M K++VG LS Sbjct: 78 VLGQPHH----ELDSKTIDPKVAFPRRAQPKMVTRT--------KKIFVGGLSANTVVED 125 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 ++ F + GKV DA +++D+ + R RGFGFVT+ + D V Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV 164 Score = 48.9 bits (115), Expect = 1e-05 Identities = 21/58 (36%), Positives = 35/58 (60%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 K+++G LSW +L + FS+ G++ + V+ D + RSRGFGFVT+ V+ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +2 Query: 2 ATPRPSTP----RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 A PR + P R K+FVG L + FEQ G VE +++D+ T R RGFGF Sbjct: 96 AFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGF 155 Query: 170 VTMGSVEEVAAAVE 211 VT + + V E Sbjct: 156 VTFENEDVVEKVCE 169
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 69.3 bits (168), Expect = 7e-12 Identities = 49/159 (30%), Positives = 73/159 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L F + G + V+ D T RSRGFGFVT A+V++ Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD----PASVDK 77 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 G ++S P+ F R M K++VG LS Sbjct: 78 VLGQPHH----ELDSKTIDPKVAFPRRAQPKMVTRT--------KKIFVGGLSANTVVED 125 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 ++ F + GKV DA +++D+ + R RGFGFVT+ + D V Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV 164 Score = 48.9 bits (115), Expect = 1e-05 Identities = 21/58 (36%), Positives = 35/58 (60%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 K+++G LSW +L + FS+ G++ + V+ D + RSRGFGFVT+ V+ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +2 Query: 2 ATPRPSTP----RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 A PR + P R K+FVG L + FEQ G VE +++D+ T R RGFGF Sbjct: 96 AFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGF 155 Query: 170 VTMGSVEEVAAAVE 211 VT + + V E Sbjct: 156 VTFENEDVVEKVCE 169
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 68.9 bits (167), Expect = 9e-12 Identities = 58/208 (27%), Positives = 85/208 (40%), Gaps = 31/208 (14%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P + + + F+ N+PF V L L E+ G V VE++ D G+SRG V Sbjct: 61 PYSNPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKM 119 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPP------------------------------PP 274 E + A E N ++ GRPL+V P PP Sbjct: 120 EESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPP 179 Query: 275 RDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDR 454 P P + S ++V NL + V L+ +FS G V+ A ++ D+ Sbjct: 180 SILNNPNIPNEIIHALQAGRLGST--VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 237 Query: 455 DSGRSRGFGFVTYGSADEVNNAISNLDG 538 D G+SRG G VT+ + E AIS +G Sbjct: 238 D-GKSRGIGIVTFEQSIEAVQAISMFNG 264 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV NL + V +L +F AG V +++ D+ G+SRG G VT E A+ F Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGIVTFEQSIEAVQAISMF 262 Query: 218 NGYTFQGRPLRV--NSGPPPPRDEFAPRTPRAM 310 NG RP+ V + P D F P P+ + Sbjct: 263 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQL 295 Score = 38.5 bits (88), Expect = 0.013 Identities = 23/73 (31%), Positives = 41/73 (56%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 A +++V NL + L++ F+E G VL A + ++G+S+G G V + S + A Sbjct: 650 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERAC 707 Query: 524 SNLDGVDLDGRQI 562 ++G+ L GR+I Sbjct: 708 RMMNGMKLSGREI 720 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/76 (30%), Positives = 33/76 (43%) Frame = +2 Query: 26 RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAA 205 + ++FV NLPF L F + G V ++ + G+S+G G V S E A Sbjct: 649 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERA 706 Query: 206 VEQFNGYTFQGRPLRV 253 NG GR + V Sbjct: 707 CRMMNGMKLSGREIDV 722
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 68.9 bits (167), Expect = 9e-12 Identities = 51/173 (29%), Positives = 82/173 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L LF G++ +VV D S+G+ +V S+ A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V R +F P A +F + ++V N+ +D+ L Sbjct: 166 NGVRLNNRQVYVG------RFKF-PEERAAEVRTRDRATFTN---VFVKNIGDDIDDEKL 215 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF E G KVI D SG+S+GFGFV Y + + A+ +L G +DG+ Sbjct: 216 KELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/167 (29%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV N+ +D +L LF + G E V+V+ D +G+S+GFGFV + E AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + G+ L V + A R S +Y+ NL +++ L Sbjct: 260 HGKSIDGKVLYVGRA-QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + FS G + AKV+ + G+ +GFG V + S +E A+ ++G Sbjct: 319 KEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Score = 64.7 bits (156), Expect = 2e-10 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V L F AG + + D +T G+G+V + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P R+ P R +++ NL +DN L Sbjct: 80 NFDLINGKPFRLMWSQPDDR-----------------LRKSGVGNIFIKNLDKSIDNRAL 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LFS G +L KV+ D D+G S+G+ +V + S N AI +++GV L+ RQ+ Sbjct: 123 FYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S P + +++ NL T++ +L F GS+ +V+ + G+ +GFG V S EE Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354 Query: 197 AAAVEQFNGYTFQGRPLRVNSG 262 AV++ NG +PL V G Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLG 376
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 68.9 bits (167), Expect = 9e-12 Identities = 51/173 (29%), Positives = 82/173 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L LF G++ +VV D S+G+ +V S+ A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V R +F P A +F + ++V N+ +D+ L Sbjct: 166 NGVRLNNRQVYVG------RFKF-PEERAAEVRTRDRATFTN---VFVKNIGDDIDDEKL 215 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF E G KVI D SG+S+GFGFV Y + + A+ +L G +DG+ Sbjct: 216 KELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/167 (29%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV N+ +D +L LF + G E V+V+ D +G+S+GFGFV + E AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + G+ L V + A R S +Y+ NL +++ L Sbjct: 260 HGKSIDGKVLYVGRA-QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + FS G + AKV+ + G+ +GFG V + S +E A+ ++G Sbjct: 319 KEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Score = 64.7 bits (156), Expect = 2e-10 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V L F AG + + D +T G+G+V + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P R+ P R +++ NL +DN L Sbjct: 80 NFDLINGKPFRLMWSQPDDR-----------------LRKSGVGNIFIKNLDKSIDNRAL 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LFS G +L KV+ D D+G S+G+ +V + S N AI +++GV L+ RQ+ Sbjct: 123 FYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S P + +++ NL T++ +L F GS+ +V+ + G+ +GFG V S EE Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354 Query: 197 AAAVEQFNGYTFQGRPLRVNSG 262 AV++ NG +PL V G Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLG 376
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 68.9 bits (167), Expect = 9e-12 Identities = 51/173 (29%), Positives = 82/173 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L LF G++ +VV D S+G+ +V S+ A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V R +F P A +F + ++V N+ +D+ L Sbjct: 166 NGVRLNNRQVYVG------RFKF-PEERAAEVRTRDRATFTN---VFVKNIGDDIDDEKL 215 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF E G KVI D SG+S+GFGFV Y + + A+ +L G +DG+ Sbjct: 216 KELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/167 (29%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV N+ +D +L LF + G E V+V+ D +G+S+GFGFV + E AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + G+ L V + A R S +Y+ NL +++ L Sbjct: 260 HGKSIDGKVLYVGRA-QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + FS G + AKV+ + G+ +GFG V + S +E A+ ++G Sbjct: 319 KEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Score = 64.7 bits (156), Expect = 2e-10 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V L F AG + + D +T G+G+V + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P R+ P R +++ NL +DN L Sbjct: 80 NFDLINGKPFRLMWSQPDDR-----------------LRKSGVGNIFIKNLDKSIDNRAL 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LFS G +L KV+ D D+G S+G+ +V + S N AI +++GV L+ RQ+ Sbjct: 123 FYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175 Score = 50.1 bits (118), Expect = 4e-06 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S P + +++ NL T++ +L F GS+ +V+ + G+ +GFG V S EE Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354 Query: 197 AAAVEQFNGYTFQGRPLRVNSG 262 AV++ NG +PL V G Sbjct: 355 TKAVDEMNGRVVGSKPLHVTLG 376
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 68.9 bits (167), Expect = 9e-12 Identities = 51/173 (29%), Positives = 82/173 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L LF G++ +VV D S+G+ +V S+ A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V R +F P A +F + ++V N+ +D+ L Sbjct: 166 NGVRLNNRQVYVG------RFKF-PEERAAEVRTRDRATFTN---VFVKNIGDDIDDEKL 215 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF E G KVI D SG+S+GFGFV Y + + A+ +L G +DG+ Sbjct: 216 KELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/167 (29%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV N+ +D +L LF + G E V+V+ D +G+S+GFGFV + E AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + G+ L V + A R S +Y+ NL +++ L Sbjct: 260 HGKSIDGKVLYVGRA-QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + FS G + AKV+ + G+ +GFG V + S +E A+ ++G Sbjct: 319 KEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Score = 64.7 bits (156), Expect = 2e-10 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V L F AG + + D +T G+G+V + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P R+ P R +++ NL +DN L Sbjct: 80 NFDLINGKPFRLMWSQPDDR-----------------LRKSGVGNIFIKNLDKSIDNRAL 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LFS G +L KV+ D D+G S+G+ +V + S N AI +++GV L+ RQ+ Sbjct: 123 FYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S P + +++ NL T++ +L F GS+ +V+ + G+ +GFG V S EE Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354 Query: 197 AAAVEQFNGYTFQGRPLRVNSG 262 AV++ NG +PL V G Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLG 376
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 68.9 bits (167), Expect = 9e-12 Identities = 51/173 (29%), Positives = 82/173 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L LF G++ +VV D S+G+ +V S+ A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V R +F P A +F + ++V N+ +D+ L Sbjct: 166 NGVRLNNRQVYVG------RFKF-PEERAAEVRTRDRATFTN---VFVKNIGDDIDDEKL 215 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF E G KVI D SG+S+GFGFV Y + + A+ +L G +DG+ Sbjct: 216 KELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/167 (29%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV N+ +D +L LF + G E V+V+ D +G+S+GFGFV + E AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + G+ L V + A R S +Y+ NL +++ L Sbjct: 260 HGKSIDGKVLYVGRA-QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + FS G + AKV+ + G+ +GFG V + S +E A+ ++G Sbjct: 319 KEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Score = 64.7 bits (156), Expect = 2e-10 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V L F AG + + D +T G+G+V + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P R+ P R +++ NL +DN L Sbjct: 80 NFDLINGKPFRLMWSQPDDR-----------------LRKSGVGNIFIKNLDKSIDNRAL 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LFS G +L KV+ D D+G S+G+ +V + S N AI +++GV L+ RQ+ Sbjct: 123 FYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S P + +++ NL T++ +L F GS+ +V+ + G+ +GFG V S EE Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354 Query: 197 AAAVEQFNGYTFQGRPLRVNSG 262 AV++ NG +PL V G Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLG 376
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 68.9 bits (167), Expect = 9e-12 Identities = 51/173 (29%), Positives = 82/173 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL ++D+ L LF G++ +VV D S+G+ +V S+ A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG R + V R +F P A +F + ++V N+ +D+ L Sbjct: 166 NGVRLNNRQVYVG------RFKF-PEERAAEVRTRDRATFTN---VFVKNIGDDIDDEKL 215 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF E G KVI D SG+S+GFGFV Y + + A+ +L G +DG+ Sbjct: 216 KELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/167 (29%), Positives = 79/167 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV N+ +D +L LF + G E V+V+ D +G+S+GFGFV + E AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + G+ L V + A R S +Y+ NL +++ L Sbjct: 260 HGKSIDGKVLYVGRA-QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 318 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 + FS G + AKV+ + G+ +GFG V + S +E A+ ++G Sbjct: 319 KEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Score = 64.7 bits (156), Expect = 2e-10 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG+L V L F AG + + D +T G+G+V + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P R+ P R +++ NL +DN L Sbjct: 80 NFDLINGKPFRLMWSQPDDR-----------------LRKSGVGNIFIKNLDKSIDNRAL 122 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LFS G +L KV+ D D+G S+G+ +V + S N AI +++GV L+ RQ+ Sbjct: 123 FYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S P + +++ NL T++ +L F GS+ +V+ + G+ +GFG V S EE Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354 Query: 197 AAAVEQFNGYTFQGRPLRVNSG 262 AV++ NG +PL V G Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLG 376
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 68.6 bits (166), Expect = 1e-11 Identities = 52/164 (31%), Positives = 73/164 (44%), Gaps = 1/164 (0%) Frame = +2 Query: 35 KVFVGNL-PFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 K+F+G L P+T + L + Q G V V V+ D T RSRGFGF+T V A E Sbjct: 33 KLFIGGLAPYTTEE-NLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + G+ + P P E + S KL+VG L D Sbjct: 92 N-RPHIIDGKTVEAKRALPRPERE-------------SRETNISVKKLFVGGLKDNHDEE 137 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L F + G V+ K++ D+ +G+ RGF FV + D V+ AI Sbjct: 138 CLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/71 (35%), Positives = 41/71 (57%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL++G L+ L+ + + GKV+D V+ D + RSRGFGF+TY + V+ A N Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 530 LDGVDLDGRQI 562 + +DG+ + Sbjct: 93 RPHI-IDGKTV 102
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Frame = +2 Query: 14 PSTPRXLK-VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ R L+ VFVGN+P+ QL +F + GSV +VYDR TG+ +G+GF E Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 191 EVAAAVEQFNGYTFQGRPLRV-NSGPPPPRDEFAPRTPRA 307 +A+ NG F GR LRV N+ ++E P A Sbjct: 69 TALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAA 108 Score = 59.3 bits (142), Expect = 7e-09 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S ++VGN+ + L+++FSE G V+ +++YDR++G+ +G+GF Y + +A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 521 ISNLDGVDLDGRQI 562 + NL+G + GR + Sbjct: 74 MRNLNGREFSGRAL 87
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 68.6 bits (166), Expect = 1e-11 Identities = 48/175 (27%), Positives = 82/175 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV L + S +L FEQAG V ++V D+++GRS+G +V + V AA+ Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G G P+ V E + A + ++L V N+ + + + + Sbjct: 301 SGKRLLGLPVIVQL----TEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDV 356 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + +F G + + D D RS+GFG++ Y + NA+ ++G DL GR + Sbjct: 357 KAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNM 410 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/92 (29%), Positives = 45/92 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++ V N+ F + + +FE G +E V + D RS+GFG++ + A+E+ Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEK 399 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAM 310 NG+ GR +RV G D+F T +M Sbjct: 400 MNGFDLAGRNMRVCLG----NDKFTTETTSSM 427
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 68.6 bits (166), Expect = 1e-11 Identities = 46/163 (28%), Positives = 72/163 (44%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L FE+ G++ V V+ D T RSRGFGF+T + A + Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QN 83 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + GR + P R E A + KL+VG L D Sbjct: 84 ARPHKIDGRTVEPKRAVP--RQEIDSPNAGA-----------TVKKLFVGGLRDDHDEEC 130 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 L F + G+++ ++ D+D+G+ RGF F+ + D V+ I Sbjct: 131 LREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 49.7 bits (117), Expect = 6e-06 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + KL++G L + + L+ F + G ++D V+ D + RSRGFGF+TY + ++N Sbjct: 21 EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDN 80 Query: 518 AISNLDGVDLDGRQI 562 A N +DGR + Sbjct: 81 A-QNARPHKIDGRTV 94 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L D L F+ G + V +V D+ TG+ RGF F+ + V + Q Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Frame = +2 Query: 14 PSTPRXLK-VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ R L+ VFVGN+P+ QL +F + GSV +VYDR TG+ +G+GF E Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 191 EVAAAVEQFNGYTFQGRPLRV-NSGPPPPRDEFAPRTPRA 307 +A+ NG F GR LRV N+ ++E P A Sbjct: 69 TALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAA 108 Score = 59.3 bits (142), Expect = 7e-09 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S ++VGN+ + L+++FSE G V+ +++YDR++G+ +G+GF Y + +A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 521 ISNLDGVDLDGRQI 562 + NL+G + GR + Sbjct: 74 MRNLNGREFSGRAL 87
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 68.2 bits (165), Expect = 2e-11 Identities = 58/208 (27%), Positives = 85/208 (40%), Gaps = 31/208 (14%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P + + + F+ N+PF V L L E+ G V VE++ D G+SRG V Sbjct: 62 PYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKM 120 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPP------------------------------PP 274 E + A E N ++ GRPL+V P PP Sbjct: 121 EESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPP 180 Query: 275 RDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDR 454 P P + S ++V NL + V L+ +FS G V+ A ++ D+ Sbjct: 181 SILNNPNIPNEIIHALQAGRLGST--VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 238 Query: 455 DSGRSRGFGFVTYGSADEVNNAISNLDG 538 D G+SRG G VT+ + E AIS +G Sbjct: 239 D-GKSRGIGTVTFEQSIEAVQAISMFNG 265 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFV NL + V +L +F AG V +++ D+ G+SRG G VT E A+ F Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 263 Query: 218 NGYTFQGRPLRV--NSGPPPPRDEFAPRTPRAM 310 NG RP+ V + P D F P P+ + Sbjct: 264 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQL 296 Score = 38.5 bits (88), Expect = 0.013 Identities = 23/73 (31%), Positives = 41/73 (56%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 A +++V NL + L++ F+E G VL A + ++G+S+G G V + S + A Sbjct: 651 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERAC 708 Query: 524 SNLDGVDLDGRQI 562 ++G+ L GR+I Sbjct: 709 RMMNGMKLSGREI 721 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/76 (30%), Positives = 33/76 (43%) Frame = +2 Query: 26 RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAA 205 + ++FV NLPF L F + G V ++ + G+S+G G V S E A Sbjct: 650 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERA 707 Query: 206 VEQFNGYTFQGRPLRV 253 NG GR + V Sbjct: 708 CRMMNGMKLSGREIDV 723
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 68.2 bits (165), Expect = 2e-11 Identities = 51/175 (29%), Positives = 80/175 (45%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++GNL V + L L QAG V + + DR+ GFGF ++V A + Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 N G+P+RVN + AN L+VGNL VD L Sbjct: 73 NQVKLFGKPIRVNRA----------------SQDRGVNTLIGAN-LFVGNLDPLVDERVL 115 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + FS G+++ A + ++GRS+G+GFV+Y S + + AI ++ L + I Sbjct: 116 YDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPI 170 Score = 46.2 bits (108), Expect = 6e-05 Identities = 26/73 (35%), Positives = 35/73 (47%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FVGNL VD L F G + V GRS+G+GFV+ S E AA+E Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 218 NGYTFQGRPLRVN 256 N +P+ V+ Sbjct: 161 NNQFLMNKPITVS 173
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 68.2 bits (165), Expect = 2e-11 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 10/177 (5%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQA-GSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVG+L T + + L F S +++ D +TG SR +GFV S +E A+ Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMH 243 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFA--------PRTPRAMXXXXXXXSFDSAN-KLYVGN 367 GY QGRPLR++ P R A P + S D N ++VG Sbjct: 244 MQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGG 303 Query: 368 LSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 L+ + L+ F G++L+ K+ + +G GFV Y AI+ + G Sbjct: 304 LASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAINTMQG 354 Score = 36.6 bits (83), Expect = 0.050 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLF-SEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADE 508 S D ++VG+L ++S L F S AK+I D +G SR +GFV + S E Sbjct: 177 SRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKE 236 Query: 509 VNNAISNLDGVDLDGRQI 562 +A+ ++ G GR + Sbjct: 237 QQHALMHMQGYLCQGRPL 254
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 67.0 bits (162), Expect = 3e-11 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 2/177 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 + V NL + L LF++A S++M + GR +G+ FV + E+ A+ Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 518 Query: 218 NGYTFQGRPLRVN-SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK-LYVGNLSWGVDNS 391 N +GR +R+ S P + R F+ +K L+V LS Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNAR-----------GGFNQQSKTLFVRGLSEDTTEE 567 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 TL F + A+++ DRD+G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 568 TLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621 Score = 47.0 bits (110), Expect = 4e-05 Identities = 39/173 (22%), Positives = 77/173 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL T D +L ++ + ++V R+ G S+ FG+V S E++ A+ Q Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI-GSSKRFGYVDFLSAEDMDKAL-QL 340 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG G +++ ++ A L+V NL + V + Sbjct: 341 NGKKLMGLEIKLEKA-------------KSKESLKENKKERDARTLFVKNLPYRVTEDEM 387 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +N+F L+ +++ +++ G S+G ++ + + E A+ G ++DGR Sbjct: 388 KNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGR 436 Score = 36.6 bits (83), Expect = 0.050 Identities = 26/77 (33%), Positives = 34/77 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV L L FE GS+ +V DR TG S+GFGFV S E+ AA E Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 218 NGYTFQGRPLRVNSGPP 268 G + ++ P Sbjct: 612 EDGEIDGNKVTLDFAKP 628
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 67.0 bits (162), Expect = 3e-11 Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 31/203 (15%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVA 199 P +VF+ N+P+ + + L E+ G V VE+ D G+SRG G V E V Sbjct: 88 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDA-EGKSRGCGVVEFKDEEFVK 146 Query: 200 AAVEQFNGYTFQGRPLRVNSGPP------------------------------PPRDEFA 289 A+E N Y GRPL + P PP Sbjct: 147 KALETMNKYDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNN 206 Query: 290 PRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRS 469 P P + S ++V NL + V L+ +FS G V A + D+D G+S Sbjct: 207 PNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKS 263 Query: 470 RGFGFVTYGSADEVNNAISNLDG 538 RG G VT+ A E AIS +G Sbjct: 264 RGMGTVTFEQAIEAVQAISMFNG 286 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL F V +L +F AG+V+ ++ D+ G+SRG G VT E A+ F Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 218 NGYTFQGRPLRV 253 NG RP+ V Sbjct: 285 NGQFLFDRPMHV 296 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/72 (30%), Positives = 43/72 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N+++V NL + + L+ FS+ G V+ A++ ++G+S+G G V + SA+ A Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACR 571 Query: 527 NLDGVDLDGRQI 562 ++G+ + GR+I Sbjct: 572 IMNGIKISGREI 583 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/73 (34%), Positives = 34/73 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NLPF + +L F Q G V E+ + G+S+G G V S E A Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME--NGKSKGCGTVRFESAESAEKACRI 572 Query: 215 FNGYTFQGRPLRV 253 NG GR + V Sbjct: 573 MNGIKISGREIDV 585
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 67.0 bits (162), Expect = 3e-11 Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 31/203 (15%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVA 199 P +VF+ N+P+ + + L E+ G V VE+ D G+SRG G V E V Sbjct: 97 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKD-AEGKSRGCGVVEFKDEEFVK 155 Query: 200 AAVEQFNGYTFQGRPLRVNSGPP------------------------------PPRDEFA 289 A+E N Y GRPL + P PP Sbjct: 156 KALETMNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNN 215 Query: 290 PRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRS 469 P P + S ++V NL + V L+ +FS G V A + D+D G+S Sbjct: 216 PNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKS 272 Query: 470 RGFGFVTYGSADEVNNAISNLDG 538 RG G VT+ A E AIS +G Sbjct: 273 RGMGTVTFEQAIEAVQAISMFNG 295 Score = 50.1 bits (118), Expect = 4e-06 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV NL F V +L +F AG+V+ ++ D+ G+SRG G VT E A+ F Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 218 NGYTFQGRPLRVN-SGPPPPRDEF------APRTPRAM 310 NG RP+ V P +E+ P+ PR + Sbjct: 294 NGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGL 331 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/73 (34%), Positives = 34/73 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NLPF + +L F Q G V E+ + G+S+G G V S E A Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME--NGKSKGCGTVRFDSPESAEKACRI 581 Query: 215 FNGYTFQGRPLRV 253 NG GR + V Sbjct: 582 MNGIKISGREIDV 594 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/72 (29%), Positives = 42/72 (58%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N+++V NL + + L+ FS+ G V+ A++ ++G+S+G G V + S + A Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACR 580 Query: 527 NLDGVDLDGRQI 562 ++G+ + GR+I Sbjct: 581 IMNGIKISGREI 592
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 66.6 bits (161), Expect = 5e-11 Identities = 40/174 (22%), Positives = 82/174 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +V+VG++ F + + F G ++ + + +D +T + +GF FV E A+EQ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 NG GR ++V R P+ + + S N++YV ++ + Sbjct: 191 MNGALMGGRNIKVG------RPSNMPQAQQVIDEVQEEAK--SFNRIYVASIHPDLSEED 242 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 ++++F G +L K+ +G+GF+ Y + ++ AI++++ DL G+ Sbjct: 243 IKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQ 296 Score = 38.5 bits (88), Expect = 0.013 Identities = 18/71 (25%), Positives = 37/71 (52%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 ++YVG++S+ + T+ F+ G + + +D + + +GF FV Y + A+ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 530 LDGVDLDGRQI 562 ++G + GR I Sbjct: 191 MNGALMGGRNI 201 Score = 33.9 bits (76), Expect = 0.33 Identities = 18/92 (19%), Positives = 38/92 (41%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +++V ++ + + +FE G + ++ +G+GF+ + + + A+ Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAM 310 N + G+ LRV PP P T M Sbjct: 288 MNLFDLGGQLLRVGRSITPPNALACPTTNSTM 319
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +2 Query: 14 PSTPRXLK-VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ R L+ VFVGN+P+ QL +F + G V +VYDR TG+ +G+GF E Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 191 EVAAAVEQFNGYTFQGRPLRVNS 259 +A+ NG F GR LRV++ Sbjct: 69 TALSAMRNLNGREFSGRALRVDN 91 Score = 58.9 bits (141), Expect = 9e-09 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S ++VGN+ + L+++FSE G V+ +++YDR++G+ +G+GF Y + +A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 521 ISNLDGVDLDGRQI 562 + NL+G + GR + Sbjct: 74 MRNLNGREFSGRAL 87
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +2 Query: 14 PSTPRXLK-VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ R L+ VFVGN+P+ QL +F + G V +VYDR TG+ +G+GF E Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 191 EVAAAVEQFNGYTFQGRPLRVNS 259 +A+ NG F GR LRV++ Sbjct: 69 TALSAMRNLNGREFSGRALRVDN 91 Score = 58.9 bits (141), Expect = 9e-09 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S ++VGN+ + L+++FSE G V+ +++YDR++G+ +G+GF Y + +A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 521 ISNLDGVDLDGRQI 562 + NL+G + GR + Sbjct: 74 MRNLNGREFSGRAL 87
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 66.6 bits (161), Expect = 5e-11 Identities = 30/71 (42%), Positives = 48/71 (67%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG L++ D LE+ FS G + + V+ DR++ RSRGFGF+T+ + + ++A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 530 LDGVDLDGRQI 562 ++G LDGRQI Sbjct: 67 MNGESLDGRQI 77 Score = 61.2 bits (147), Expect = 2e-09 Identities = 32/74 (43%), Positives = 41/74 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F D L F G + V VV DR T RSRGFGF+T + E + A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGESLDGRQIRVD 80
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 66.6 bits (161), Expect = 5e-11 Identities = 47/176 (26%), Positives = 81/176 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+GNL + +L LFE+ G+V +VV + +GFV M + ++ A++ Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQN 59 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 NGYT ++V + + AP TP K++VGNL+ Sbjct: 60 LNGYTLNEFAIKVEAA----KSRRAPNTP--------------TTKIFVGNLTDKTRAPE 101 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + LF + G V++ ++ R +GFV +V +AI L+G +DG+ + Sbjct: 102 VRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPL 149 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/80 (33%), Positives = 45/80 (56%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 P+TP K+FVGNL + ++ LF++ G+V ++V R +GFV + V + Sbjct: 81 PNTPTT-KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGD 131 Query: 194 VAAAVEQFNGYTFQGRPLRV 253 V A+++ NG G+PL+V Sbjct: 132 VQDAIKELNGRVVDGQPLKV 151
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +2 Query: 14 PSTPRXLK-VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ R L+ VFVGN+P+ QL +F + G V +VYDR TG+ +G+GF E Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 191 EVAAAVEQFNGYTFQGRPLRVNS 259 +A+ NG F GR LRV++ Sbjct: 69 TALSAMRNLNGREFSGRALRVDN 91 Score = 58.9 bits (141), Expect = 9e-09 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S ++VGN+ + L+++FSE G V+ +++YDR++G+ +G+GF Y + +A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 521 ISNLDGVDLDGRQI 562 + NL+G + GR + Sbjct: 74 MRNLNGREFSGRAL 87
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +2 Query: 14 PSTPRXLK-VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 P+ R L+ VFVGN+P+ QL +F + G V +VYDR TG+ +G+GF E Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 191 EVAAAVEQFNGYTFQGRPLRVNS 259 +A+ NG F GR LRV++ Sbjct: 69 TALSAMRNLNGREFSGRALRVDN 91 Score = 58.9 bits (141), Expect = 9e-09 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S ++VGN+ + L+++FSE G V+ +++YDR++G+ +G+GF Y + +A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 521 ISNLDGVDLDGRQI 562 + NL+G + GR + Sbjct: 74 MRNLNGREFSGRAL 87
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 66.2 bits (160), Expect = 6e-11 Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 1/174 (0%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 V NL ++ L +FE+A S+ + + GR++GF F+ S E+ A++ N Sbjct: 418 VNNLSYSATEDSLREVFEKATSIRIPQ-----NQGRAKGFAFIEFSSAEDAKDAMDSCNN 472 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRT-PRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLE 400 +GR +R+ EF+ P+ S L+V LS TL+ Sbjct: 473 TEIEGRSIRL---------EFSQGGGPQGGGRGGSAQS----KTLFVRGLSEDTTEETLK 519 Query: 401 NLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F ++A+++ DRD+G S+GFGFV + +A++ A ++ ++DG ++ Sbjct: 520 EAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKV 570 Score = 52.8 bits (125), Expect = 7e-07 Identities = 43/186 (23%), Positives = 80/186 (43%) Frame = +2 Query: 5 TPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 T + L +F+GNL T + +L + S + + + D G S+ FG+V S Sbjct: 223 TKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNSKKFGYVDFSS 281 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVG 364 EEV A+ + G G +++ +++ A + L+V Sbjct: 282 EEEVEKAL-KLTGKKILGTEVKIEKAMAFDKNKTAENKKER-----------DSRTLFVK 329 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVD 544 N+ + L+ +F E K D ++ +D G ++G +V + + DE N A+ G + Sbjct: 330 NIPYSTTVEELQEIF-ENAK--DIRIPTGKD-GSNKGIAYVEFSNEDEANKALEEKQGAE 385 Query: 545 LDGRQI 562 ++GR I Sbjct: 386 IEGRSI 391 Score = 36.2 bits (82), Expect = 0.066 Identities = 26/86 (30%), Positives = 37/86 (43%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 R + + +FV L L F+ GSV +V DR TG S+GFGFV + E Sbjct: 495 RGGSAQSKTLFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAE 551 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPP 268 + AA E G + ++ P Sbjct: 552 DAKAAKEAMEDGEIDGNKVTLDFAKP 577
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 66.2 bits (160), Expect = 6e-11 Identities = 28/71 (39%), Positives = 49/71 (69%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL++G L++ + LE F++ G++ + V+ DR++ RSRGFGFVT+ + D+ +A+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 530 LDGVDLDGRQI 562 ++G +DGRQI Sbjct: 66 MNGKSVDGRQI 76 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/74 (41%), Positives = 43/74 (58%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L F + L F + G + V VV DR T RSRGFGFVT +V++ A+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 66 MNGKSVDGRQIRVD 79
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 65.9 bits (159), Expect = 8e-11 Identities = 48/182 (26%), Positives = 85/182 (46%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 S+P ++VG+L +V L F + S+ V + D +GRS +G+ S ++ Sbjct: 19 SSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDA 78 Query: 197 AAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSW 376 A+E+ N G+ +RV ++ R P A + ++V NL Sbjct: 79 NLAIEKKNNSLLNGKMIRV---------MWSVRAPDARR--------NGVGNVFVKNLPE 121 Query: 377 GVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 V N+ L+++F + G ++ KV D G+SRG+GFV + D + AI L+ + + Sbjct: 122 SVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180 Query: 557 QI 562 +I Sbjct: 181 EI 182 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/175 (24%), Positives = 72/175 (41%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NL V L F + G + + + D RG+ FV + E+ A E Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 NG F + L V E R + + +YV N++ V L Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLRE-QFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 FS+ G + K++ D + G+S+GFGFV + + +E +A+ G G+ + Sbjct: 321 RKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++V N+ V +L F Q G++ +++ D G+S+GFGFV + EE AV+ F Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 218 NGYTFQGRPLRV 253 +G F G+PL V Sbjct: 365 HGQMFHGKPLYV 376
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 65.5 bits (158), Expect = 1e-10 Identities = 32/73 (43%), Positives = 50/73 (68%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + KLY+G LS G D +L++ FS V +A+V+ ++ +GRSRG+GFV + S D N+AI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 524 SNLDGVDLDGRQI 562 S ++G +L+G I Sbjct: 90 SAMNGQELNGFNI 102 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+++G L D L F V V+ +++TGRSRG+GFV S + +A+ Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 215 FNGYTFQGRPLRVN 256 NG G + VN Sbjct: 92 MNGQELNGFNISVN 105
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 65.1 bits (157), Expect = 1e-10 Identities = 30/71 (42%), Positives = 47/71 (66%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 KL+VG L++ D LE+ FS G + + V+ DR++ RSRGFGF+T+ + + + A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 530 LDGVDLDGRQI 562 ++G LDGRQI Sbjct: 67 MNGESLDGRQI 77 Score = 62.0 bits (149), Expect = 1e-09 Identities = 32/74 (43%), Positives = 41/74 (55%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L F D L F G + V VV DR T RSRGFGF+T + E + A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 215 FNGYTFQGRPLRVN 256 NG + GR +RV+ Sbjct: 67 MNGESLDGRQIRVD 80
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 62.8 bits (151), Expect = 7e-10 Identities = 44/175 (25%), Positives = 70/175 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+FVGNL + ++ LF Q G + ++V + FGFV M S E A++ Sbjct: 2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQ 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V P+ ++ KL+VGN+S N Sbjct: 54 NLHHYMLNGMAMNVEMSKGKPK---------------------TSTKLHVGNISSSCTNQ 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 L F E G V++ ++ D + FV ++ AIS LD G+ Sbjct: 93 ELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISGLDNTAFQGK 139
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 62.4 bits (150), Expect = 9e-10 Identities = 27/58 (46%), Positives = 44/58 (75%) Frame = +2 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++L + FS G+VL++K+I DR++ RSRGFGFVT+ + + + +AI ++G +LDGR I Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNI 58 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/59 (42%), Positives = 33/59 (55%) Frame = +2 Query: 80 LAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVN 256 L F G V +++ DR T RSRGFGFVT + E + +A+E NG GR + VN Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 62.0 bits (149), Expect = 1e-09 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTM---GSVEEVAAA 205 K+FVG L + +L F + G +E + V D TGRSRGF F+ ++++V+AA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116 Query: 206 VEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVD 385 E +NS P+ A K++VG L+ + Sbjct: 117 DEHI-----------INSKKVDPKKAKARH-----------------GKIFVGGLTTEIS 148 Query: 386 NSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + ++ F + G +++ ++ +D+ + +GF F+T+ S V + + Sbjct: 149 DEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL 194 Score = 45.8 bits (107), Expect = 8e-05 Identities = 20/59 (33%), Positives = 32/59 (54%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVN 514 D KL+VG LSW L + F + G++ V D +GRSRGF F+ + + + ++ Sbjct: 53 DDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAID 111 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/92 (26%), Positives = 45/92 (48%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P+ + R K+FVG L + ++ F Q G++ VE+ +D+ + +GF F+T S Sbjct: 128 PKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS- 186 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDE 283 E+V + + G+ + V P P ++ Sbjct: 187 EQVVTDLLKTPKQKIAGKEVDVKRATPKPENQ 218
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 61.6 bits (148), Expect = 1e-09 Identities = 43/173 (24%), Positives = 81/173 (46%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 + NL ++ L +FE+A +++ + G+S+G+ F+ S E+ A+ N Sbjct: 489 LSNLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAKEALNSCNK 544 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLEN 403 +GR +R+ P +P A + L+V LS TL+ Sbjct: 545 MEIEGRTIRLELQGPRG-------SPNARS--------QPSKTLFVKGLSEDTTEETLKE 589 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F +G V A+++ DR++G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 590 SF--EGSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 639 Score = 47.4 bits (111), Expect = 3e-05 Identities = 41/175 (23%), Positives = 74/175 (42%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+GNL A+L + + + VV D TG +R FG+V S E++ A+E Sbjct: 309 LFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKALE-L 366 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 G G +++ P RD R R L NLS+ + L Sbjct: 367 TGLKVFGNEIKLEK--PKGRDSKKVRAART---------------LLAKNLSFNITEDEL 409 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + +F + L+ +++ G+S+G ++ + S + + G ++DGR + Sbjct: 410 KEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 459 Score = 38.5 bits (88), Expect = 0.013 Identities = 30/97 (30%), Positives = 39/97 (40%) Frame = +2 Query: 5 TPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 +P + +FV L L FE GSV +V DR TG S+GFGFV S Sbjct: 562 SPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNS 618 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPR 295 E+ AA E G + ++ P F R Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR 655
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 61.6 bits (148), Expect = 1e-09 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Frame = +2 Query: 173 TMGSVEEVAAAV-EQFNGYTFQGRPLRVNSGPPPPRDEF--APRTPRAMXXXXXXXSFDS 343 T G+ E AV E G + G + + PP PR APR + + Sbjct: 12 TTGATENGHEAVPEASRGRGWTGAAAGLEARPPRPRAGIRTAPRDQ-----INASKNEED 66 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 A K++VG LSW L++ F++ G+V+D + D ++GRSRGFGF+ + A V + Sbjct: 67 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 126 Query: 524 SNLDGVDLDGRQI 562 + LDGR I Sbjct: 127 DQKEH-RLDGRVI 138 Score = 50.1 bits (118), Expect = 4e-06 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 1/164 (0%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L + L F + G V + D TGRSRGFGF+ V ++Q Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS-WGVDNS 391 + GR + P+ AM D K++VG L+ Sbjct: 129 -KEHRLDGRVI-------------DPKKAMAMKK-------DPVKKIFVGGLNPESPTEE 167 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + F E G++ ++ D + RGF F+T+ + V + Sbjct: 168 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 211 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = +2 Query: 35 KVFVGNL-PFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 K+FVG L P + ++ F + G +E +E+ D + RGF F+T E V +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 212 QFNGYTFQGRPLRVNSGPP 268 + +T G + P Sbjct: 213 K-KFHTVSGSKCEIKVAQP 230
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 61.2 bits (147), Expect = 2e-09 Identities = 45/169 (26%), Positives = 79/169 (46%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+FVG++P T ++ FEQ G+V V ++ D+ TG+ +G FV + ++ A+ Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + + + G P + +A + KL+VG+L+ Sbjct: 180 ALH------NQITLPGGTGPVQVRYADGERERIGTLEF--------KLFVGSLNKQATEK 225 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 +E +F + G V D ++ D + +SRG GFV Y S + AI L+G Sbjct: 226 EVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 61.2 bits (147), Expect = 2e-09 Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 18/193 (9%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV ++P V QLA F ++ VV D RSRGFGFV+ ++ A+ + Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSRGFGFVSFAVEDDTKEALAKA 86 Query: 218 NGYTFQGRPLRVNSGPPPPRDE-----FAPRTPRAMXXXXXXXSFDSAN----------- 349 F G LRV+ R + TP + + D + Sbjct: 87 RKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGK 146 Query: 350 -KLYVGNLSWGV-DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 KL + N+ W D L+ +F G V++A + RD G+ GF FVT A+ Sbjct: 147 PKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIAL 205 Query: 524 SNLDGVDLDGRQI 562 N + +DGR++ Sbjct: 206 ENTKDLKIDGRKV 218 Score = 37.7 bits (86), Expect = 0.023 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 39/204 (19%) Frame = +2 Query: 35 KVFVGNLPFTV-DSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 K+ + N+P++ D +L +F + G+V + R G+ GF FVTM + A+E Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKR-DGKLCGFAFVTMKKISNCRIALE 206 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXS------------------- 334 GR + V+ R E + M S Sbjct: 207 NTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENEEE 266 Query: 335 ---FDSANK----------------LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRD 457 D A+K ++V N+ + +L FS+ G V A + D+ Sbjct: 267 DRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKS 326 Query: 458 SGRSRGFGFVTYGSADEVNNAISN 529 +G ++G FV + N I N Sbjct: 327 TGLAKGTAFVAFKDQYTYNECIKN 350 Score = 35.0 bits (79), Expect = 0.15 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFV 172 VFV N+P+ LA F + GSV+ V D+ TG ++G FV Sbjct: 292 VFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFV 336
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 60.8 bits (146), Expect = 2e-09 Identities = 41/173 (23%), Positives = 79/173 (45%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 + NL ++ L +FE+A +++ + G+S+G+ F+ S E+ A+ N Sbjct: 489 LSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNK 544 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLEN 403 +GR +R+ P +P A + L+V LS TL+ Sbjct: 545 REIEGRAIRLELQGPRG-------SPNARS--------QPSKTLFVKGLSEDTTEETLKE 589 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F + A+++ DR++G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 590 SFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 639 Score = 43.9 bits (102), Expect = 3e-04 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 1/176 (0%) Frame = +2 Query: 38 VFVGNLPFTVDSAQL-AGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVGNL F + +L G+ + ++ V D G +R FG+V S E++ A+E Sbjct: 308 LFVGNLNFNKSAPELKTGISDVFAKNDLA--VVDVRIGMTRKFGYVDFESAEDLEKALE- 364 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 G G +++ P +D R R L NL + V Sbjct: 365 LTGLKVFGNEIKLEK--PKGKDSKKERDART---------------LLAKNLPYKVTQDE 407 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L+ +F + ++ + +D G+S+G ++ + + + G ++DGR I Sbjct: 408 LKEVFEDAAEIR----LVSKD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 458 Score = 37.4 bits (85), Expect = 0.029 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +2 Query: 104 GSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDE 283 GSV +V DR TG S+GFGFV S E+ AA E G + ++ P Sbjct: 593 GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Query: 284 FAPR 295 F R Sbjct: 652 FGGR 655
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 60.8 bits (146), Expect = 2e-09 Identities = 43/173 (24%), Positives = 82/173 (47%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 + NL ++ L +FE+A +++ + + G+S+G+ F+ S E+ A+ N Sbjct: 492 LSNLSYSATEETLQEVFEKATFIKVPQNPH----GKSKGYAFIEFASFEDAKEALNSCNK 547 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLEN 403 +GR +R+ P +P A + L+V LS TL+ Sbjct: 548 MEIEGRTIRLELQGPRG-------SPNARS--------QPSKTLFVKGLSEDTTEETLKE 592 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F +G V A+++ DR++G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 593 SF--EGSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 642 Score = 48.5 bits (114), Expect = 1e-05 Identities = 43/183 (23%), Positives = 77/183 (42%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 P+TP +F+GNL A+L + + + V D TG +R FG+V S E+ Sbjct: 306 PTTP--FNLFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGTNRKFGYVDFESAED 362 Query: 194 VAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 + A+E G G +++ P RD R R L NLS Sbjct: 363 LEKALE-LTGLKVFGNEIKLEK--PKGRDSKKVRAART---------------LLAKNLS 404 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + + L+ +F + ++ +++ GRS+G ++ + S + + G ++DG Sbjct: 405 FNITEDELKEVFED---AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDG 459 Query: 554 RQI 562 R + Sbjct: 460 RSV 462 Score = 38.5 bits (88), Expect = 0.013 Identities = 30/97 (30%), Positives = 39/97 (40%) Frame = +2 Query: 5 TPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 +P + +FV L L FE GSV +V DR TG S+GFGFV S Sbjct: 565 SPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNS 621 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPR 295 E+ AA E G + ++ P F R Sbjct: 622 EEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR 658
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 60.8 bits (146), Expect = 2e-09 Identities = 41/173 (23%), Positives = 79/173 (45%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 + NL ++ L +FE+A +++ + G+S+G+ F+ S E+ A+ N Sbjct: 491 LSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNK 546 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLEN 403 +GR +R+ P +P A + L+V LS TL+ Sbjct: 547 REIEGRAIRLELQGPRG-------SPNARS--------QPSKTLFVKGLSEDTTEETLKE 591 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F + A+++ DR++G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 592 SFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 641 Score = 43.9 bits (102), Expect = 3e-04 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 1/176 (0%) Frame = +2 Query: 38 VFVGNLPFTVDSAQL-AGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVGNL F + +L G+ + ++ V D G +R FG+V S E++ A+E Sbjct: 310 LFVGNLNFNKSAPELKTGISDVFAKNDLA--VVDVRIGMTRKFGYVDFESAEDLEKALE- 366 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 G G +++ P +D R R L NL + V Sbjct: 367 LTGLKVFGNEIKLEK--PKGKDSKKERDART---------------LLAKNLPYKVTQDE 409 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L+ +F + ++ + +D G+S+G ++ + + + G ++DGR I Sbjct: 410 LKEVFEDAAEIR----LVSKD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 460 Score = 37.4 bits (85), Expect = 0.029 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +2 Query: 104 GSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDE 283 GSV +V DR TG S+GFGFV S E+ AA E G + ++ P Sbjct: 595 GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653 Query: 284 FAPR 295 F R Sbjct: 654 FGGR 657
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 60.8 bits (146), Expect = 2e-09 Identities = 41/173 (23%), Positives = 79/173 (45%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 + NL ++ L +FE+A +++ + G+S+G+ F+ S E+ A+ N Sbjct: 490 LSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNK 545 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLEN 403 +GR +R+ P +P A + L+V LS TL+ Sbjct: 546 REIEGRAIRLELQGPRG-------SPNARS--------QPSKTLFVKGLSEDTTEETLKE 590 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F + A+++ DR++G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 591 SFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 640 Score = 43.9 bits (102), Expect = 3e-04 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 1/176 (0%) Frame = +2 Query: 38 VFVGNLPFTVDSAQL-AGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVGNL F + +L G+ + ++ V D G +R FG+V S E++ A+E Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLA--VVDVRIGMTRKFGYVDFESAEDLEKALE- 365 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 G G +++ P +D R R L NL + V Sbjct: 366 LTGLKVFGNEIKLEK--PKGKDSKKERDART---------------LLAKNLPYKVTQDE 408 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L+ +F + ++ + +D G+S+G ++ + + + G ++DGR I Sbjct: 409 LKEVFEDAAEIR----LVSKD-GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 459 Score = 37.4 bits (85), Expect = 0.029 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +2 Query: 104 GSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDE 283 GSV +V DR TG S+GFGFV S E+ AA E G + ++ P Sbjct: 594 GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652 Query: 284 FAPR 295 F R Sbjct: 653 FGGR 656
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 59.7 bits (143), Expect = 6e-09 Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFE-QAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 PSTP +FVG+L T A L LF+ + SV+ V V+ D +TG SR FGFV G + Sbjct: 187 PSTPE-FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDED 245 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPP 268 E A+ + +G FQGR LRV P Sbjct: 246 ERRRALIEMSGKWFQGRALRVAYATP 271 Score = 35.0 bits (79), Expect = 0.15 Identities = 29/123 (23%), Positives = 47/123 (38%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAA 202 P VFVG L QL LF+ G + V + + GFV + A Sbjct: 357 PTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIP------NGKNCGFVKFEKRIDAEA 410 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 +++ G+ G P+R++ G P + + + S+N L + + V Sbjct: 411 SIQGLQGFIVGGSPIRLSWGRP------SSSNAKTNSTIMGASQYMSSNGLRAPSAASSV 464 Query: 383 DNS 391 DNS Sbjct: 465 DNS 467
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 58.9 bits (141), Expect = 9e-09 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 17/192 (8%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVE---------VVYDRMTGRSRGF--------G 166 VFVGNLP T + +L F++ G VE V + ++ R F Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINA 244 Query: 167 FVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSA 346 +V A A+++ +G +RV+ E A R R++ Sbjct: 245 YVVFKEERAAAKALQRNGAQIAEGFRIRVDLA-----SETASRDKRSV------------ 287 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 +VGNL + VD S LE F + G ++ +++ + +G RGFG+V + + D V+ A+ Sbjct: 288 ---FVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL- 343 Query: 527 NLDGVDLDGRQI 562 L+ +L GR++ Sbjct: 344 KLNNSELMGRKL 355 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/72 (41%), Positives = 41/72 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVGNLP+ VD + L F GS+ V +V + +TG RGFG+V + + V A+ + Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 345 Query: 218 NGYTFQGRPLRV 253 N GR LRV Sbjct: 346 NNSELMGRKLRV 357
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 58.9 bits (141), Expect = 9e-09 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 61/225 (27%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS---VEEVAAAV 208 VFVG + +D ++ F + GSV+ V+++ +R TG S+G+GFV+ + V+++ + Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 265 Query: 209 EQFNGYTF----------------QGRPLRVNSGPPP--------PRDE----------- 283 F+G Q RPL VN PPP P E Sbjct: 266 IHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNP 325 Query: 284 --------FAPRTPRAMXXXXXXXSFDSA---------------NKLYVGNLSWGVDNST 394 P TP + SA N ++VG + +D + Sbjct: 326 VTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETE 385 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 + + F G V + K+I +R +G S+G+GFV++ + +V + + Sbjct: 386 IGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 429 Score = 58.9 bits (141), Expect = 9e-09 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 61/225 (27%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS---VEEVAAAV 208 VFVG + +D ++ F + GSV+ V+++ +R TG S+G+GFV+ + V+++ + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 100 Query: 209 EQFNGYTF----------------QGRPLRVNSGPPP--------PRDE----------- 283 F+G Q RPL VN PPP P E Sbjct: 101 IHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNP 160 Query: 284 --------FAPRTPRAMXXXXXXXSFDSA---------------NKLYVGNLSWGVDNST 394 P TP + SA N ++VG + +D + Sbjct: 161 VTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETE 220 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 + + F G V + K+I +R +G S+G+GFV++ + +V + + Sbjct: 221 IGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 19/107 (17%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS---VEEVAAAV 208 VFVG + +D ++ F + GSV+ V+++ +R TG S+G+GFV+ + V+++ + Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 430 Query: 209 EQFNGYTF----------------QGRPLRVNSGPPPPRDEFAPRTP 301 F+G Q RPL VN PPPP+ + R P Sbjct: 431 IHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNP-PPPPQFQNVWRNP 476 Score = 36.6 bits (83), Expect = 0.050 Identities = 17/61 (27%), Positives = 36/61 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N ++VG + +D + + + F G V + K+I +R +G S+G+GFV++ + +V + Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 527 N 529 + Sbjct: 99 S 99
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 58.9 bits (141), Expect = 9e-09 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 61/225 (27%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS---VEEVAAAV 208 VFVG + +D ++ F + GSV+ V+++ +R TG S+G+GFV+ + V+++ + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 100 Query: 209 EQFNGYTF----------------QGRPLRVNSGPPP--------PRDE----------- 283 F+G Q RPL VN PPP P E Sbjct: 101 IHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNP 160 Query: 284 --------FAPRTPRAMXXXXXXXSFDSA---------------NKLYVGNLSWGVDNST 394 P TP + SA N ++VG + +D + Sbjct: 161 VTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETE 220 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 + + F G V + K+I +R +G S+G+GFV++ + +V + + Sbjct: 221 IGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 19/107 (17%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS---VEEVAAAV 208 VFVG + +D ++ F + GSV+ V+++ +R TG S+G+GFV+ + V+++ + Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 265 Query: 209 EQFNGYTF----------------QGRPLRVNSGPPPPRDEFAPRTP 301 F+G Q RPL VN PPPP+ + R P Sbjct: 266 IHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNP-PPPPQFQNVWRNP 311 Score = 36.6 bits (83), Expect = 0.050 Identities = 17/61 (27%), Positives = 36/61 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N ++VG + +D + + + F G V + K+I +R +G S+G+GFV++ + +V + Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 527 N 529 + Sbjct: 99 S 99
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 58.9 bits (141), Expect = 9e-09 Identities = 25/75 (33%), Positives = 47/75 (62%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL++G L+ + LE +F + G++++ ++ DR++ +SRGF FVT+ S + + Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 518 AISNLDGVDLDGRQI 562 A +++G LDG+ I Sbjct: 65 AARDMNGKSLDGKAI 79 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 12/99 (12%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L +F + G + V ++ DR T +SRGF FVT S + A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 215 FNGYTFQGRPLRVNSG------------PPPPRDEFAPR 295 NG + G+ ++V PPPPR PR Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 58.5 bits (140), Expect = 1e-08 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVGN+P+ V Q+ +F Q G V+ ++V D TG +G+GF E A AV + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 218 NGYTFQGRPLRVNSGPPPPRD----EFAPRTPRAM 310 N R +RV PR E+ RT R M Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYM 103 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/77 (25%), Positives = 42/77 (54%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S + N ++VGN+ + V + +F++ G V K++ D ++G +G+GF + ++ Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETT 61 Query: 512 NNAISNLDGVDLDGRQI 562 A+ L+ +L R+I Sbjct: 62 AMAVRKLNNSELGPRKI 78
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 58.2 bits (139), Expect = 2e-08 Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVY---DRMTGR--SRGFGFVT 175 RP+T VFV NL F S L F+ + +V + G+ S GFGFV Sbjct: 599 RPATAST-SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVE 657 Query: 176 MGSVEEVAAAVEQFNGYTFQGRPLRV---NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSA 346 S E A + +G+ G L++ N G +DE T +A+ Sbjct: 658 FSSKEAAEIAQKAMDGHVLDGHKLQLKISNRG----QDEETTETKKAID----------- 702 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 +K+ + NL + ++ LF G + +V +S SRGF F Y SA E +A+S Sbjct: 703 SKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNS-ESRGFAFAEYVSAKEAEHAMS 761 Query: 527 NLDGVDLDGRQI 562 L G L GR++ Sbjct: 762 ALQGTHLLGRRL 773 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/78 (34%), Positives = 38/78 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++F+ NL +T LF Q G +E V + + TG+ +GF V E AA E Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 215 FNGYTFQGRPLRVNSGPP 268 +G FQGR L + G P Sbjct: 362 QDGKIFQGRLLHILPGKP 379 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/75 (22%), Positives = 32/75 (42%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S +L++ NL + LFS+ G++ + + + +G+ +GF V + + Sbjct: 296 SIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENA 355 Query: 512 NNAISNLDGVDLDGR 556 A DG GR Sbjct: 356 IAAYEAQDGKIFQGR 370
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 57.8 bits (138), Expect = 2e-08 Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 14/188 (7%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT-------------GRSR 157 ST + V LP T+ ++ LF G +E V+++ D+ G+S Sbjct: 144 STETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSL 203 Query: 158 GFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSF 337 G+GFV ++ AV NG Q + ++V+ P + Sbjct: 204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP------------------SSDAI 245 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDR-DSGRSRGFGFVTYGSADEVN 514 AN LYV L + LE +F+ G ++ ++++ + + +++G GF+ + +E Sbjct: 246 KGAN-LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 304 Query: 515 NAISNLDG 538 AI L+G Sbjct: 305 RAIIALNG 312 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/73 (38%), Positives = 44/73 (60%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL + A L LF G+V+ V++V D T + +G+GFV+M + +E A A+ Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 218 NGYTFQGRPLRVN 256 NGYT R L+V+ Sbjct: 464 NGYTMGNRVLQVS 476 Score = 43.5 bits (101), Expect = 4e-04 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 49/234 (20%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTG-RSRGFGFVTM 178 A P + ++V LP T+ +L +F G++ ++ + +++G GF+ Sbjct: 238 ARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRF 297 Query: 179 GSVEEVAAAVEQFNGYT-----------FQGRP--------------------------- 244 EE A+ NG T F P Sbjct: 298 DKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM 357 Query: 245 -LRVNSG----PPPPRDEFAPRTPRAMXXXXXXXSF-----DSANKLYVGNLSWGVDNST 394 VN G P D P + + A +++ NL+ + + Sbjct: 358 HTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAA 417 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 L LF G V K++ D + + +G+GFV+ + DE AI L+G + R Sbjct: 418 LWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNR 471
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 57.8 bits (138), Expect = 2e-08 Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 14/188 (7%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT-------------GRSR 157 ST + V LP T+ ++ LF G +E V+++ D+ G+S Sbjct: 180 STETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSL 239 Query: 158 GFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSF 337 G+GFV ++ AV NG Q + ++V+ P + Sbjct: 240 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP------------------SSDAI 281 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDR-DSGRSRGFGFVTYGSADEVN 514 AN LYV L + LE +F+ G ++ ++++ + + +++G GF+ + +E Sbjct: 282 KGAN-LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 340 Query: 515 NAISNLDG 538 AI L+G Sbjct: 341 RAIIALNG 348 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/73 (38%), Positives = 44/73 (60%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+ NL + A L LF G+V+ V++V D T + +G+GFV+M + +E A A+ Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 218 NGYTFQGRPLRVN 256 NGYT R L+V+ Sbjct: 500 NGYTMGNRVLQVS 512 Score = 43.5 bits (101), Expect = 4e-04 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 49/234 (20%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTG-RSRGFGFVTM 178 A P + ++V LP T+ +L +F G++ ++ + +++G GF+ Sbjct: 274 ARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRF 333 Query: 179 GSVEEVAAAVEQFNGYT-----------FQGRP--------------------------- 244 EE A+ NG T F P Sbjct: 334 DKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM 393 Query: 245 -LRVNSG----PPPPRDEFAPRTPRAMXXXXXXXSF-----DSANKLYVGNLSWGVDNST 394 VN G P D P + + A +++ NL+ + + Sbjct: 394 HTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAA 453 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 L LF G V K++ D + + +G+GFV+ + DE AI L+G + R Sbjct: 454 LWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNR 507
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 57.4 bits (137), Expect = 3e-08 Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 11/192 (5%) Frame = +2 Query: 20 TPRXLKVFVGNLPFTVDSA----------QLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 T + +++VGN+PF + +L GL + G+ + + + + F F Sbjct: 145 TRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAF 199 Query: 170 VTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPP-PPRDEFAPRTPRAMXXXXXXXSFDSA 346 + SV+E A+ F+G FQG+ L++ P + + DSA Sbjct: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA 258 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 +KL++G L +++ ++ L + G + ++ D +G S+G+ F Y + + AI+ Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 318 Query: 527 NLDGVDLDGRQI 562 L+G+ L +++ Sbjct: 319 GLNGMQLGDKKL 330 Score = 36.6 bits (83), Expect = 0.050 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G LP ++ Q+ L G ++ +V D TG S+G+ F + A+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 215 FNGYTFQGRPLRV 253 NG + L V Sbjct: 320 LNGMQLGDKKLLV 332
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 57.4 bits (137), Expect = 3e-08 Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 11/192 (5%) Frame = +2 Query: 20 TPRXLKVFVGNLPFTVDSA----------QLAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 T + +++VGN+PF + +L GL + G+ + + + + F F Sbjct: 145 TRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAF 199 Query: 170 VTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPP-PPRDEFAPRTPRAMXXXXXXXSFDSA 346 + SV+E A+ F+G FQG+ L++ P + + DSA Sbjct: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSA 258 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 +KL++G L +++ ++ L + G + ++ D +G S+G+ F Y + + AI+ Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 318 Query: 527 NLDGVDLDGRQI 562 L+G+ L +++ Sbjct: 319 GLNGMQLGDKKL 330 Score = 36.6 bits (83), Expect = 0.050 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G LP ++ Q+ L G ++ +V D TG S+G+ F + A+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 215 FNGYTFQGRPLRV 253 NG + L V Sbjct: 320 LNGMQLGDKKLLV 332
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/173 (23%), Positives = 79/173 (45%) Frame = +2 Query: 44 VGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNG 223 + NL ++ L +FE+A +++ + + G+ +G+ F+ S E+ A+ N Sbjct: 490 LSNLSYSATKETLEEVFEKATFIKVPQNPH----GKPKGYAFIEFASFEDAKEALNSCNK 545 Query: 224 YTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLEN 403 +GR +R+ R + + L+V LS TL+ Sbjct: 546 MEIEGRTIRLELQGSNSRSQ-------------------PSKTLFVKGLSEDTTEETLKE 586 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 F +G V A+++ DR++G S+GFGFV + S ++ A ++ ++DG ++ Sbjct: 587 SF--EGSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 636 Score = 50.4 bits (119), Expect = 3e-06 Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 2/173 (1%) Frame = +2 Query: 50 NLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYT 229 NL F + +L +FE A + +V G+S+G ++ S + +E+ G Sbjct: 400 NLSFNITEDELKEVFEDAMEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAE 454 Query: 230 FQGRPLRVN-SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK-LYVGNLSWGVDNSTLEN 403 GR + + +G R E +T ++ +K L + NLS+ TLE Sbjct: 455 IDGRSVSLYYTGEKGQRQERTGKT----------STWSGESKTLVLSNLSYSATKETLEE 504 Query: 404 LFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 +F + + + G+ +G+ F+ + S ++ A+++ + ++++GR I Sbjct: 505 VFEKATFI----KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTI 553 Score = 47.0 bits (110), Expect = 4e-05 Identities = 42/183 (22%), Positives = 77/183 (42%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 P+TP +F+GNL +L + + + VV D TG +R FG+V S E+ Sbjct: 304 PTTP--FNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAED 360 Query: 194 VAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 + A+E G G +++ P RD R R L NLS Sbjct: 361 LEKALE-LTGLKVFGNEIKLEK--PKGRDSKKVRAART---------------LLAKNLS 402 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + + L+ +F + ++ +++ G+S+G ++ + S + + G ++DG Sbjct: 403 FNITEDELKEVFED---AMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 457 Query: 554 RQI 562 R + Sbjct: 458 RSV 460 Score = 38.1 bits (87), Expect = 0.017 Identities = 29/86 (33%), Positives = 36/86 (41%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV L L FE GSV +V DR TG S+GFGFV S E+ AA E Sbjct: 570 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPR 295 G + ++ P F R Sbjct: 627 EDGEIDGNKVTLDWAKPKGEGGFGGR 652
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 57.4 bits (137), Expect = 3e-08 Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 2/179 (1%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVD--SAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 S+ + VFV NLP++++ +L LFE G V + ++ G RG+ +V G + Sbjct: 699 SSKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSN-RGDFRGYCYVEFGEEK 757 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNL 370 A+E + +GRP+ V+ P D+ + +KL++ L Sbjct: 758 SAQQALE-LDRKIVEGRPMFVS----PCVDKSKNPDFKVFRYSTTL----EKHKLFISGL 808 Query: 371 SWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 547 + LE++ G V D +++ +R +G+ +G +V Y + + + A+ +DG+ + Sbjct: 809 PFSCTKEELEDICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI 866 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/81 (25%), Positives = 43/81 (53%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+ LPF+ +L + + G+V+ + +V +R G+ +G +V + + + AV + Sbjct: 802 KLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMK 860 Query: 215 FNGYTFQGRPLRVNSGPPPPR 277 +G T + ++V PP R Sbjct: 861 MDGMTIRENVIKVAISNPPQR 881
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 57.4 bits (137), Expect = 3e-08 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 17/192 (8%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVE---------VVYDRMTGRSRGF--------G 166 VFVGNLP T + +L F++ G VE V + ++ R F Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINA 250 Query: 167 FVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSA 346 +V A A+++ +G +RV+ E A R R++ Sbjct: 251 YVVFKDESAAAKALQRNGAQIAEGFRIRVDLA-----SETASRDKRSV------------ 293 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 +VGNL + +++S LE F + G ++ +++ + +G RGFG+V + + D V+ A+ Sbjct: 294 ---FVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL- 349 Query: 527 NLDGVDLDGRQI 562 L+ +L GR++ Sbjct: 350 KLNNSELMGRKL 361 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/72 (38%), Positives = 41/72 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVGNLP+ ++ + L F GS+ V +V + +TG RGFG+V + + V A+ + Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 351 Query: 218 NGYTFQGRPLRV 253 N GR LRV Sbjct: 352 NNSELMGRKLRV 363
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/75 (32%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL++G L+ + LE +F + G++++ ++ DR++ +SRGF FVT+ S + + Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 518 AISNLDGVDLDGRQI 562 +++G LDG+ I Sbjct: 65 VARDMNGKSLDGKAI 79 Score = 52.4 bits (124), Expect = 9e-07 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 12/99 (12%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L +F + G + + ++ DR T +SRGF FVT S + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 215 FNGYTFQGRPLRVNSG------------PPPPRDEFAPR 295 NG + G+ ++V PPPPR PR Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 57.0 bits (136), Expect = 4e-08 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + A K++VG LSW L++ F++ G+V+D + D ++GRSRGFGF+ + + V Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131 Query: 518 AISNLDGVDLDGRQI 562 + + LDGR I Sbjct: 132 VLDQKEH-RLDGRVI 145 Score = 54.3 bits (129), Expect = 2e-07 Identities = 41/163 (25%), Positives = 64/163 (39%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L + L F + G V + D TGRSRGFGF+ V ++Q Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + GR + P+ AM D K++VG L+ Sbjct: 136 -KEHRLDGRVI-------------DPKKAMAMKK-------DPVKKIFVGGLNPEATEEK 174 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 + F + G++ ++ D + RGF F+T+ D V + Sbjct: 175 IREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217 Score = 36.2 bits (82), Expect = 0.066 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L ++ F Q G +E +E+ D + RGF F+T + V +E+ Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 215 FNGYTFQGRPLRVNSGPP 268 +T G + P Sbjct: 220 -KFHTVSGSKCEIKVAQP 236
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 57.0 bits (136), Expect = 4e-08 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 5/182 (2%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGS--VEMVEVVYDRMTGR---SRGFGFVTMGSVEEV 196 + +FV NL F+ SAQLA F+ V V+ D S GFGF+ + E+ Sbjct: 612 VSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQA 671 Query: 197 AAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSW 376 A + +G G +++ + P+T + + K+ V NL + Sbjct: 672 GAVIAAMDGAVIDGHKIQLKISH---KQSSLPKTSKGSKKKI-------SGKIIVKNLPF 721 Query: 377 GVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LFS G++ +V D +RGF FV + E NA+ L GV L GR Sbjct: 722 EATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAMDQLQGVHLLGR 780 Query: 557 QI 562 ++ Sbjct: 781 RL 782 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++F+ N+ + LF G +E V V D TG+S+GF +V E A A + Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 215 FNGYTFQGRPLRV 253 + FQGR L + Sbjct: 362 LDKQIFQGRLLHI 374 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/113 (20%), Positives = 44/113 (38%) Frame = +2 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 +G + P P ++ P+ + +L++ N+ + Sbjct: 258 DGEDAEAAPAPQEQAAEEPAEQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDF 317 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LFS G++ + V D +G+S+GF +V + + NA LD GR Sbjct: 318 KQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGR 370 Score = 32.3 bits (72), Expect = 0.95 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLF----EQAG-----SVEMVEVVYDRMTGRSRGFGFVTMGSV 187 +V V LP ++ A+L F +Q G + V++V D+ +G SR F F+ S Sbjct: 3 RVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDK-SGNSRRFAFIGYRSE 61 Query: 188 EEVAAAVEQFNG 223 ++ A+E FNG Sbjct: 62 QDAFDAIEYFNG 73
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.6 bits (135), Expect = 5e-08 Identities = 25/75 (33%), Positives = 46/75 (61%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL++G L+ + LE +F + G++++ ++ DR++ +SRGF FVT S + + Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKD 64 Query: 518 AISNLDGVDLDGRQI 562 A +++G LDG+ I Sbjct: 65 AARDMNGKSLDGKAI 79 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 12/99 (12%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L +F + G + + ++ DR T +SRGF FVT+ S + A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 215 FNGYTFQGRPLRVNSG------------PPPPRDEFAPR 295 NG + G+ ++V PPPPR PR Sbjct: 69 MNGKSLDGKAIKVEQATKPFFESGRRGPPPPPRSRGPPR 107
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 56.6 bits (135), Expect = 5e-08 Identities = 31/77 (40%), Positives = 45/77 (58%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S S L+V LS + L++LFS+ GKV+ AKV+ + S +R +GFVT ++DE Sbjct: 446 SCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEA 505 Query: 512 NNAISNLDGVDLDGRQI 562 IS+L +L GR I Sbjct: 506 TKCISHLHRTELHGRMI 522 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/91 (25%), Positives = 40/91 (43%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 R S ++V L + +A L LF + G V +VV + + +R +GFVTM + + Sbjct: 444 RASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSD 503 Query: 191 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDE 283 E + + GR + V P ++ Sbjct: 504 EATKCISHLHRTELHGRMISVEKAKNEPSEK 534
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 56.6 bits (135), Expect = 5e-08 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FVG LP+ + + +F Q G + + +V D+ TG+S+GF F+ AV+ F Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 218 NGYTFQGRPLRVN 256 NG +GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/70 (27%), Positives = 41/70 (58%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 ++VG L + + + +FS+ G++++ ++ D+ +G+S+GF F+ Y A+ N Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 533 DGVDLDGRQI 562 +G+ + GR I Sbjct: 98 NGIKIKGRTI 107
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S L+V LS + L+NLFS+ GKV+ AKV+ + S +R +GFVT ++DE Sbjct: 405 SGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKC 464 Query: 521 ISNLDGVDLDGRQI 562 IS+L +L GR I Sbjct: 465 ISHLHRTELHGRMI 478 Score = 37.0 bits (84), Expect = 0.038 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++V L T + L LF + G V +VV + + +R +GFVTM + +E + Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 218 NGYTFQGRPLRVNSGPPPP 274 + GR + V P Sbjct: 469 HRTELHGRMISVEKAKNEP 487
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 56.2 bits (134), Expect = 6e-08 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 15/196 (7%) Frame = +2 Query: 20 TPRXLKVFVGNLPFTVDSAQ----------LAGLFEQAGSVEMVEVVYDRMTGRSRGFGF 169 T + +++VGN+PF V + L GL + AGS + + + F F Sbjct: 89 TRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQI-----NLDKNFAF 143 Query: 170 VTMGSVEEVAAAVEQFNGYTFQGRPLRV---NSGPPPPRDEFAPRTPRAMXXXXXXXSF- 337 + S++E A+ F+G +G+ L++ + P P P A+ + Sbjct: 144 LEFRSIDETTQAMA-FDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVV 202 Query: 338 -DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVN 514 DS +K+++G L +++ ++ L GK+ ++ D +G S+G+ F Y + Sbjct: 203 PDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITD 262 Query: 515 NAISNLDGVDLDGRQI 562 +I+ L+G+ L +++ Sbjct: 263 QSIAGLNGMQLGDKKL 278 Score = 37.7 bits (86), Expect = 0.023 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 11/102 (10%) Frame = +2 Query: 290 PRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQ-----------GKVLDA 436 P TP+ A +LYVGN+ +GV + F++Q VL Sbjct: 74 PDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLAC 133 Query: 437 KVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++ D++ F F+ + S DE A++ DG++L G+ + Sbjct: 134 QINLDKN------FAFLEFRSIDETTQAMA-FDGINLKGQSL 168 Score = 35.0 bits (79), Expect = 0.15 Identities = 22/84 (26%), Positives = 37/84 (44%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 +T P +P K+F+G LP ++ Q+ L G + +V D TG S+G+ F Sbjct: 199 STVVPDSPH--KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYV 256 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRV 253 + ++ NG + L V Sbjct: 257 DLSITDQSIAGLNGMQLGDKKLIV 280
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 55.8 bits (133), Expect = 8e-08 Identities = 41/159 (25%), Positives = 66/159 (41%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L F + G V + D +TGRSRGFGFV E V ++Q Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + ++N P+ A +T + K++VG LS Sbjct: 158 --------KEHKLNGKVIDPKRAKAMKTK------------EPVKKIFVGGLSPDTPEEK 197 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 + F G+V ++ D + + RGF F+T+ + V Sbjct: 198 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236 Score = 51.2 bits (121), Expect = 2e-06 Identities = 22/58 (37%), Positives = 37/58 (63%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 K+++G LSW L++ FS+ G+V+D + D +GRSRGFGFV + ++ V+ + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L ++ F G VE +E+ D T + RGF F+T E V +E+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 55.8 bits (133), Expect = 8e-08 Identities = 41/159 (25%), Positives = 66/159 (41%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L F + G V + D +TGRSRGFGFV E V ++Q Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + ++N P+ A +T + K++VG LS Sbjct: 158 --------KEHKLNGKVIDPKRAKAMKTK------------EPVKKIFVGGLSPDTPEEK 197 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 + F G+V ++ D + + RGF F+T+ + V Sbjct: 198 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236 Score = 51.2 bits (121), Expect = 2e-06 Identities = 22/58 (37%), Positives = 37/58 (63%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 K+++G LSW L++ FS+ G+V+D + D +GRSRGFGFV + ++ V+ + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L ++ F G VE +E+ D T + RGF F+T E V +E+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 55.8 bits (133), Expect = 8e-08 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 8/183 (4%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ- 214 VFVGNLP T + +L F++ G +E V R R G++ + AA+++ Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESV---------RFRSL-IPAEGTLSKKLAAIKRK 236 Query: 215 -------FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 N Y + A + S D + ++VGNL Sbjct: 237 IHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS-VFVGNLP 295 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + V+ S +E F + G ++ +++ D+ +G +GFG+V + + D V+ A+ L+ +L G Sbjct: 296 YKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMG 354 Query: 554 RQI 562 R++ Sbjct: 355 RKL 357 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVGNLP+ V+ + + F GS+ V +V D+MTG +GFG+V + + V A+ + Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KL 347 Query: 218 NGYTFQGRPLRV 253 N GR LRV Sbjct: 348 NNSELMGRKLRV 359
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 55.8 bits (133), Expect = 8e-08 Identities = 41/159 (25%), Positives = 66/159 (41%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L F + G V + D +TGRSRGFGFV E V ++Q Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + ++N P+ A +T + K++VG LS Sbjct: 156 --------KEHKLNGKVIDPKRAKAMKTK------------EPVKKIFVGGLSPDTPEEK 195 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 + F G+V ++ D + + RGF F+T+ + V Sbjct: 196 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 234 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/58 (37%), Positives = 36/58 (62%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 K+++G LSW L++ FS+ G V+D + D +GRSRGFGFV + ++ V+ + Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 153 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG L ++ F G VE +E+ D T + RGF F+T E V +E+ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/70 (38%), Positives = 40/70 (57%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V LS L +FS+ G + D ++YD+ S RSRGF FV + + D+ A Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179 Query: 533 DGVDLDGRQI 562 +G++LDGR+I Sbjct: 180 NGMELDGRRI 189 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/59 (38%), Positives = 35/59 (59%) Frame = +2 Query: 80 LAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVN 256 L +F + G + V +VYD+ + RSRGF FV +V++ A E+ NG GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/70 (38%), Positives = 40/70 (57%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V LS L +FS+ G + D ++YD+ S RSRGF FV + + D+ A Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179 Query: 533 DGVDLDGRQI 562 +G++LDGR+I Sbjct: 180 NGMELDGRRI 189 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/59 (38%), Positives = 35/59 (59%) Frame = +2 Query: 80 LAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVN 256 L +F + G + V +VYD+ + RSRGF FV +V++ A E+ NG GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/70 (38%), Positives = 40/70 (57%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V LS L +FS+ G + D ++YD+ S RSRGF FV + + D+ A Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179 Query: 533 DGVDLDGRQI 562 +G++LDGR+I Sbjct: 180 NGMELDGRRI 189 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/59 (38%), Positives = 35/59 (59%) Frame = +2 Query: 80 LAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVN 256 L +F + G + V +VYD+ + RSRGF FV +V++ A E+ NG GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/74 (41%), Positives = 38/74 (51%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG LP+ A L FE G +E V+ DR TG+SRG+GFVTM A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 215 FNGYTFQGRPLRVN 256 N GR VN Sbjct: 72 PNP-IIDGRKANVN 84 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/70 (34%), Positives = 40/70 (57%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 K++VG L + +++L F G + +A VI DR +G+SRG+GFVT A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 530 LDGVDLDGRQ 559 + + +DGR+ Sbjct: 72 PNPI-IDGRK 80
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 55.1 bits (131), Expect = 1e-07 Identities = 31/74 (41%), Positives = 38/74 (51%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+FVG LP+ A L FE G +E V+ DR TG+SRG+GFVTM A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 215 FNGYTFQGRPLRVN 256 N GR VN Sbjct: 93 PNP-IIDGRKANVN 105 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/87 (32%), Positives = 46/87 (52%) Frame = +2 Query: 299 PRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGF 478 P AM +F K++VG L + +++L F G + +A VI DR +G+SRG+ Sbjct: 19 PSAMHGSRKDTTF---TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 75 Query: 479 GFVTYGSADEVNNAISNLDGVDLDGRQ 559 GFVT + A + + + +DGR+ Sbjct: 76 GFVTMADRAAADRACKDPNPI-IDGRK 101
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +F+G LP+ + + +F Q G + + +V D+ TG+S+GF F+ AV+ F Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 218 NGYTFQGRPLRVN 256 NG +GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/70 (25%), Positives = 41/70 (58%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +++G L + + + +FS+ G++++ ++ D+ +G+S+GF F+ Y A+ N Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 533 DGVDLDGRQI 562 +G+ + GR I Sbjct: 98 NGIKIKGRTI 107
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 55.1 bits (131), Expect = 1e-07 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 13/194 (6%) Frame = +2 Query: 20 TPRXLKVFVGNLPFTVDSAQLAGLFEQ-----------AGSVEMVEVVYDRMTGRSRGFG 166 T + +++VGN+PF + + F Q + + ++ D + F Sbjct: 171 TCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLD------KNFA 224 Query: 167 FVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSF--D 340 F+ S++E A + F+G F G+ L+V PRD + M S D Sbjct: 225 FIEFRSIDETTAGM-AFDGINFMGQQLKVRR----PRDYQPSQNTFDMNARMPVSSIVVD 279 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 SANK+++G L + ++ L G + + D G S+G+ F Y + A Sbjct: 280 SANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQA 338 Query: 521 ISNLDGVDLDGRQI 562 I+ L+G+ L +Q+ Sbjct: 339 IAGLNGMQLGDKQL 352
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/167 (22%), Positives = 62/167 (37%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ LP L L + G + + + D+ T + +G+GFV S AV Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 Q + + P LY+ NL +D L Sbjct: 124 KANGVQAQMAKQQEQDP--------------------------TNLYISNLPLSMDEQEL 157 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 EN+ G+V+ +V+ D SG SRG GF S ++ I + +G Sbjct: 158 ENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHFNG 203 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/84 (33%), Positives = 43/84 (51%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NLP ++D +L + + G V V+ D +G SRG GF M S E+ A + F Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGVGFARMESTEKCEAVIGHF 201 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFA 289 NG F P V++ P +FA Sbjct: 202 NG-KFIKTPPGVSAPTEPLLCKFA 224 Score = 38.1 bits (87), Expect = 0.017 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S LY+ L + L L GK++ K I D+ + + +G+GFV + S A Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 119 Query: 521 ISNL 532 +S L Sbjct: 120 VSAL 123
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------ASTKLHVGNISPTCTNQ 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 54.3 bits (129), Expect = 2e-07 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 12/187 (6%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVG+L V+ + LF + S + +++ D T SRG+GFV + +A+ + Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247 Query: 215 FNGYTFQGRPLRVNSGPPPPRDE-FAP--RTPRAMXXXXXXXS-------FDSANK-LYV 361 G RP+RV P + F+P P +M + D+AN ++V Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 G LS V L+ LF G+++ K+ +G GFV + + AI+ L G Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIAINQLQGY 361 Query: 542 DLDGRQI 562 L +I Sbjct: 362 PLGNSRI 368 Score = 33.1 bits (74), Expect = 0.56 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVG L V +L LF+ G E+VY ++ +G GFV + + A+ Q Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFG-----EIVYVKIPP-GKGCGFVQFVNRQSAEIAINQL 358 Query: 218 NGYTFQGRPLRVNSG 262 GY +R++ G Sbjct: 359 QGYPLGNSRIRLSWG 373
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------ASTKLHVGNISPTCTNQ 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------ASTKLHVGNISPTCTNQ 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------ASTKLHVGNISPTCTNQ 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------ASTKLHVGNISPTCTNQ 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------TSTKLHVGNISPTCTNK 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/177 (22%), Positives = 71/177 (40%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 +K+F+GNLP ++ LFEQ G V +++ + +GFV + A+ Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIR 53 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y G + V + + ++ KL+VGN+S N Sbjct: 54 NLHHYKLHGVNINVEASKNKSK---------------------TSTKLHVGNISPTCTNK 92 Query: 392 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L F E G V++ ++ D + FV A++ AI LD + G+++ Sbjct: 93 ELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 53.9 bits (128), Expect = 3e-07 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 13/194 (6%) Frame = +2 Query: 20 TPRXLKVFVGNLPFTVDSAQLAGLFEQ-----------AGSVEMVEVVYDRMTGRSRGFG 166 T + +++VGN+PF + + F Q + + ++ D + F Sbjct: 180 TCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLD------KNFA 233 Query: 167 FVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSF--D 340 F+ S++E A + F+G F G+ L+V PRD + M + D Sbjct: 234 FIEFRSIDETTAGM-AFDGINFMGQQLKVRR----PRDYQPSQNTFDMNSRMPVSTIVVD 288 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 SANK+++G L + ++ L G + + D G S+G+ F Y + A Sbjct: 289 SANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQA 347 Query: 521 ISNLDGVDLDGRQI 562 I+ L+G+ L +Q+ Sbjct: 348 IAGLNGMQLGDKQL 361
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 53.5 bits (127), Expect = 4e-07 Identities = 31/98 (31%), Positives = 44/98 (44%) Frame = +2 Query: 263 PPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKV 442 P P + + P A + + +L+V NLS+ S LE +FS GK+ + V Sbjct: 267 PEKPAESDLTKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHV 326 Query: 443 IYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +D S+GF +V Y D A NLDG GR Sbjct: 327 AFDTRFTTSKGFAYVQYADPDAAVEAYRNLDGKIFQGR 364 Score = 46.2 bits (108), Expect = 6e-05 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%) Frame = +2 Query: 152 SRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXX 331 S GFGF + + AA+ NGYT L V + + + M Sbjct: 637 SMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRA------------SHKGMDAAEERR 684 Query: 332 SFDSANKL-------YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVT 490 D+A K+ + NL + + +LF G++ +V D +RGFGF Sbjct: 685 KEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFAD 743 Query: 491 YGSADEVNNAISNLDGVDLDGRQI 562 + SA E NA+ L L GR++ Sbjct: 744 FVSAREAENAMDALKNTHLLGRRL 767 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NL + ++L +F G +E + V +D S+GF +V + A Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 215 FNGYTFQGRPLRV 253 +G FQGR L + Sbjct: 356 LDGKIFQGRLLHI 368
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 53.5 bits (127), Expect = 4e-07 Identities = 37/167 (22%), Positives = 62/167 (37%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ LP L L + G + + + D+ T + +G+GFV S AV Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTL 397 Q + + P LY+ NL +D L Sbjct: 124 KASGVQAQMAKQQEQDP--------------------------TNLYISNLPLSMDEQEL 157 Query: 398 ENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 EN+ G+V+ +++ D SG SRG GF S ++ I + +G Sbjct: 158 ENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNG 203 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/84 (32%), Positives = 43/84 (51%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NLP ++D +L + + G V ++ D +G SRG GF M S E+ A + F Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHF 201 Query: 218 NGYTFQGRPLRVNSGPPPPRDEFA 289 NG F P V++ P +FA Sbjct: 202 NG-KFIKTPPGVSAPTEPLLCKFA 224 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S LY+ L + L L GK++ K I D+ + + +G+GFV + S A Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 119 Query: 521 ISNL 532 +S L Sbjct: 120 VSAL 123
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 53.1 bits (126), Expect = 5e-07 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 5/180 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGR---SRGFGFVTMGSVEEVAAAV 208 +F+ NL F+ L G+F + G+++ + + S GFGFV E+ A+ Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 209 EQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 +Q G+T G L V E A + + +K+ V N+ + + Sbjct: 784 KQLQGHTVDGHKLEVRI------SERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQ 837 Query: 389 STLENLFSEQGKVLDAKVIYD-RDSGRSRGFGFVTYGSADEVNNAISNL-DGVDLDGRQI 562 + LFS G++ ++ +G RGFGFV + + + A + L L GR++ Sbjct: 838 REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 897 Score = 51.6 bits (122), Expect = 2e-06 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 8/191 (4%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEV-VYDRMTGRSRGFGFVTMGSVE 190 P+TP +K+ PF V + E ++ V + + G G+ FV + S E Sbjct: 289 PTTPYTVKL--RGAPFNVTEKNV---IEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEE 343 Query: 191 EVAAAVEQFNGY-------TFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSAN 349 EV A++ Y F+ + GPP + RT + + Sbjct: 344 EVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRT---LGENEEEEDLADSG 400 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 +L+V NLS+ LE LFS G + + D + + +GF FVT+ + A + Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460 Query: 530 LDGVDLDGRQI 562 +DG GR + Sbjct: 461 VDGQVFQGRML 471 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/73 (34%), Positives = 35/73 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NL +T L LF G + + D +T + +GF FVT E A + Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460 Query: 215 FNGYTFQGRPLRV 253 +G FQGR L V Sbjct: 461 VDGQVFQGRMLHV 473
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 52.8 bits (125), Expect = 7e-07 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 5/180 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGS--VEMVEVVYD-RMTGR--SRGFGFVTMGSVEEVAA 202 VFV NL F L+ LF+ V V+ D + +G+ S GFGFV + E+ Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 A+ +G+ G L++ A ++ ++K+ + NL + Sbjct: 679 AISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKS----------GKSSKIIIKNLPFEA 728 Query: 383 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 L LF G++ +V D +RGF FV + E A+S L+GV L GR++ Sbjct: 729 TRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRL 787 Score = 47.0 bits (110), Expect = 4e-05 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++F+ N+ + LF Q G++E V + D TG+S+GF +V E+ A Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 215 FNGYTFQGRPLRV 253 + FQGR L + Sbjct: 371 LDKQIFQGRLLHI 383 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/136 (21%), Positives = 56/136 (41%) Frame = +2 Query: 149 RSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXX 328 +SR G V E+ V++ N T + N P ++ A + Sbjct: 258 KSRSTRIKENGEVPEIVPEVKEVNEVT-EVTQQSDNEPELTPEEQIAQK----------- 305 Query: 329 XSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADE 508 + +L++ N+S+ +LFS+ G + + + D +G+S+GF +V + ++ Sbjct: 306 --IEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKED 363 Query: 509 VNNAISNLDGVDLDGR 556 A +LD GR Sbjct: 364 ATRAYRSLDKQIFQGR 379 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/82 (29%), Positives = 35/82 (42%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+ + NLPF L LF G ++ V V + +RGF FV ++E A+ Q Sbjct: 718 KIIIKNLPFEATRKDLLELFGAFGQLKSVRVP-KKFDQSARGFAFVEFNLMKEAETAMSQ 776 Query: 215 FNGYTFQGRPLRVNSGPPPPRD 280 G GR L + P + Sbjct: 777 LEGVHLLGRRLVMQYAEQDPEN 798 Score = 38.1 bits (87), Expect = 0.017 Identities = 24/72 (33%), Positives = 35/72 (48%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 ++L V L L FS+QG V D K++ R+ G SR F F+ Y SAD A+ Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRN-GESRKFAFIGYKSADAAERAVK 60 Query: 527 NLDGVDLDGRQI 562 + +D +I Sbjct: 61 YFNKSFIDTARI 72
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 52.8 bits (125), Expect = 7e-07 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++F+ NLPF ++ FE G+V+ V + D+ T S+G FV+ AA Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 215 FNGYTFQGRPLRV 253 +G TFQGR L + Sbjct: 375 KDGSTFQGRLLHL 387 Score = 50.4 bits (119), Expect = 3e-06 Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 5/180 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGR-----SRGFGFVTMGSVEEVAA 202 ++V NL F+ +L F + R S G+GFV S++ Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 A + +G L V FA R A S + K+ + NL + Sbjct: 683 AQKAMDGKVLDAHTLVVT---------FARRNAEA---STTSISSGGSTKILIKNLPFEA 730 Query: 383 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + +LFS QG++ ++ D+ +RGFGFV Y + E +A+ L L GR + Sbjct: 731 TKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSAMEALKHTHLLGRHL 789
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 52.8 bits (125), Expect = 7e-07 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 5/182 (2%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD---RMTGR--SRGFGFVTMGSVEEV 196 + +F+ NL F+ S QL F+ + +V + G+ S GFGF + E+ Sbjct: 651 VSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQA 710 Query: 197 AAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSW 376 A + G G L++ + + R + + K+ V NL + Sbjct: 711 NAVISAMEGTILDGHKLQL---------KLSHRQGTSTTNASSKKKKKNQGKIIVKNLPF 761 Query: 377 GVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LFS G++ +V D +RGF FV + E NA+ L GV L GR Sbjct: 762 EATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLQGVHLLGR 820 Query: 557 QI 562 ++ Sbjct: 821 RL 822 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++F+ N+ +T LF G +E V + D TG+S+GF +V + + A A + Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 215 FNGYTFQGRPLRV 253 + FQGR L + Sbjct: 391 LDKQIFQGRLLHI 403 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 +L++ N+ + LFS G++ + + D +G+S+GF +V + +AD A Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 530 LDGVDLDGR 556 LD GR Sbjct: 391 LDKQIFQGR 399 Score = 36.6 bits (83), Expect = 0.050 Identities = 25/82 (30%), Positives = 35/82 (42%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+ V NLPF + LF G ++ V V + +RGF FV +E A++Q Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVP-KKFDKSARGFAFVEFLLPKEAENAMDQ 811 Query: 215 FNGYTFQGRPLRVNSGPPPPRD 280 G GR L + P D Sbjct: 812 LQGVHLLGRRLVMEFVEQDPED 833
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 52.8 bits (125), Expect = 7e-07 Identities = 33/85 (38%), Positives = 45/85 (52%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P P+T L VF L L +F + G + V VVYD+ TGRSRGF FV Sbjct: 113 ANPDPNT--CLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFE 168 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVN 256 +++ A+E+ NG GR +RV+ Sbjct: 169 RIDDSKEAMERANGMELDGRRIRVD 193 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V LS L +FS G + V+YD+ +GRSRGF FV + D+ A+ Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180 Query: 533 DGVDLDGRQI 562 +G++LDGR+I Sbjct: 181 NGMELDGRRI 190
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 52.8 bits (125), Expect = 7e-07 Identities = 33/85 (38%), Positives = 45/85 (52%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P P+T L VF L L +F + G + V VVYD+ TGRSRGF FV Sbjct: 111 ANPDPNT--CLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFE 166 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVN 256 +++ A+E+ NG GR +RV+ Sbjct: 167 RIDDSKEAMERANGMELDGRRIRVD 191 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L V LS L +FS G + V+YD+ +GRSRGF FV + D+ A+ Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178 Query: 533 DGVDLDGRQI 562 +G++LDGR+I Sbjct: 179 NGMELDGRRI 188
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 52.0 bits (123), Expect = 1e-06 Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 11/148 (7%) Frame = +2 Query: 146 GRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRT-PRAMXXXX 322 GR R G + AA V + G + RP R+ AP + P+ + Sbjct: 27 GRGRAGSQGGRGGAVQAAARVNRGGG-PMRNRPAIARGAAGGGRNRPAPYSRPKQLPDKW 85 Query: 323 XXXSFDSA----------NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSR 472 FDS KL V NL +GV ++ ++ LF+E G + A V YDR SGRS Sbjct: 86 QHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSL 144 Query: 473 GFGFVTYGSADEVNNAISNLDGVDLDGR 556 G V + + A+ +GV LDGR Sbjct: 145 GTADVHFERKADALKAMKQYNGVPLDGR 172 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/73 (35%), Positives = 39/73 (53%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+ V NL F V A + LF + G+++ V YDR +GRS G V + A++Q Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 215 FNGYTFQGRPLRV 253 +NG GRP+ + Sbjct: 164 YNGVPLDGRPMNI 176
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 52.0 bits (123), Expect = 1e-06 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 6/159 (3%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +VFVG +P + +L LFE+AG + + ++ D ++G++RG+ F+T E AV+ Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225 Query: 215 FNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 + Y + G+ L V + N+L+VG++ N Sbjct: 226 CDSYEIRPGKHLGVCISV-------------------------ANNRLFVGSIP---KNK 257 Query: 392 TLENLFSEQGKVLDAKV---IYDR--DSGRSRGFGFVTY 493 T EN+ E KV + V +Y + D ++RGF F+ Y Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEY 296 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/125 (22%), Positives = 52/125 (41%) Frame = +2 Query: 173 TMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK 352 T G E A+ + GYT + G PPP ++ P + Sbjct: 119 TKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGI------------GTE 166 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 ++VG + + L LF + G + D +++ D SG++RG+ F+T+ + A+ Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 226 Query: 533 DGVDL 547 D ++ Sbjct: 227 DSYEI 231 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Frame = +2 Query: 8 PRPSTPRXLKV-FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P P +KV FV NL TV L F + G +E V+ + D + FV Sbjct: 332 PDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFED 383 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPR 277 A+++ NG +G + + PP + Sbjct: 384 RGAAVKAMDEMNGKEIEGEEIEIVLAKPPDK 414 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L+V NL+ V LE FSE GK+ K + D + FV + A+ + Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394 Query: 533 DGVDLDGRQI 562 +G +++G +I Sbjct: 395 NGKEIEGEEI 404
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 + P V++G++P+ Q+ L G V +++++D TGRS+G+ F+ +E Sbjct: 13 NNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESS 72 Query: 197 AAAVEQFNGYTFQGRPLR 250 A+AV NGY R L+ Sbjct: 73 ASAVRNLNGYQLGSRFLK 90 Score = 45.8 bits (107), Expect = 8e-05 Identities = 19/68 (27%), Positives = 40/68 (58%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +Y+G++ + + +L S G V++ K+++D +GRS+G+ F+ + + +A+ NL Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 533 DGVDLDGR 556 +G L R Sbjct: 80 NGYQLGSR 87
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 52.0 bits (123), Expect = 1e-06 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLF-SEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 ++VG+L+ V S L LF + AK+++D+ +G S+G+GFV + ++DE A+S Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 530 LDGVDLDGRQI 562 + GV L+GR I Sbjct: 225 MQGVFLNGRAI 235 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLF-EQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 +FVG+L V +QL LF + S ++V+D++TG S+G+GFV + +E A+ + Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 215 FNGYTFQGRPLRV 253 G GR ++V Sbjct: 225 MQGVFLNGRAIKV 237
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 51.2 bits (121), Expect = 2e-06 Identities = 49/162 (30%), Positives = 65/162 (40%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVGNLP + + LF + G V + + +GFGF+ + S A + Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + +GR LRV FA A L V NLS V N Sbjct: 352 LDDTPMRGRQLRVR---------FATH----------------AAALSVRNLSPYVSNEL 386 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 LE FS+ G + A VI D D GRS G G V + S A Sbjct: 387 LEEAFSQFGPIERAVVIVD-DRGRSTGKGIVEFASKPAARKA 427 Score = 32.7 bits (73), Expect = 0.73 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 +L+VGNL + + LF++ G+ + + + +GFGF+ S A + Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 530 LDGVDLDGRQI 562 LD + GRQ+ Sbjct: 352 LDDTPMRGRQL 362
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV + + +L +F + G+V V ++ + +T SRGFGF++ +VEE +A++ Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 218 NGYTFQGRPLRV 253 N F GR L V Sbjct: 163 NSQEFYGRVLNV 174 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/70 (30%), Positives = 41/70 (58%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N L+V ++ + L+ +FS+ G V +++ + + SRGFGF+++ + +E +AI Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160 Query: 527 NLDGVDLDGR 556 NL+ + GR Sbjct: 161 NLNSQEFYGR 170
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 51.2 bits (121), Expect = 2e-06 Identities = 49/162 (30%), Positives = 65/162 (40%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVGNLP + + LF + G V + + +GFGF+ + S A + Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 + +GR LRV FA A L V NLS V N Sbjct: 344 LDDTPMRGRQLRVR---------FATH----------------AAALSVRNLSPYVSNEL 378 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 LE FS+ G + A VI D D GRS G G V + S A Sbjct: 379 LEEAFSQFGPIERAVVIVD-DRGRSTGKGIVEFASKPAARKA 419 Score = 32.7 bits (73), Expect = 0.73 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 +L+VGNL + + LF++ G+ + + + +GFGF+ S A + Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 530 LDGVDLDGRQI 562 LD + GRQ+ Sbjct: 344 LDDTPMRGRQL 354
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 19/97 (19%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE-- 211 VFVG + +D ++ G F + GSV+ V+++ DR TG S+G+GFV+ + +V VE Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 212 -QFNG----------------YTFQGRPLRVNSGPPP 271 F+G Y Q RPL N PPP Sbjct: 101 INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPP 137 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/61 (29%), Positives = 36/61 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N ++VG + +D + + F+ G V + K+I DR +G S+G+GFV++ + +V + Sbjct: 40 NTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 527 N 529 + Sbjct: 99 S 99
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/69 (39%), Positives = 42/69 (60%) Frame = +2 Query: 356 YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLD 535 +V LS + L+NLFS+ GKV+ AKV+ + S +R +GFVT +A+E I++L Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 536 GVDLDGRQI 562 +L G+ I Sbjct: 469 KTELHGKMI 477 Score = 37.4 bits (85), Expect = 0.029 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = +2 Query: 41 FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFN 220 +V L T + L LF + G V +VV + + +R +GFVTM + EE + + Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 221 GYTFQGRPLRVNSGPPPP 274 G+ + V P Sbjct: 469 KTELHGKMISVEKAKNEP 486
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 50.4 bits (119), Expect = 3e-06 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 6/183 (3%) Frame = +2 Query: 32 LKVFVGNLPFTVDSA-----QLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 +K+FVGN VD A +LA LF G+V V+ + F FV M Sbjct: 1 MKIFVGN----VDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGA 48 Query: 197 AAAVEQFNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 A+E +G+ + GR L V P P + + K++VGN+S Sbjct: 49 VRAIEALHGHELRPGRALVVEMSRPRPLNTW---------------------KIFVGNVS 87 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + L +LF +G+V++ V+ D + FV + AI+ L+G ++ G Sbjct: 88 AACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 554 RQI 562 ++I Sbjct: 140 KRI 142 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/81 (33%), Positives = 38/81 (46%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 RP K+FVGN+ S +L LFE+ G V +VV D + FV M Sbjct: 72 RPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEA 123 Query: 191 EVAAAVEQFNGYTFQGRPLRV 253 + AA+ Q NG +G+ + V Sbjct: 124 DAKAAIAQLNGKEVKGKRINV 144
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 50.4 bits (119), Expect = 3e-06 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 6/183 (3%) Frame = +2 Query: 32 LKVFVGNLPFTVDSA-----QLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 +K+FVGN VD A +LA LF G+V V+ + F FV M Sbjct: 1 MKIFVGN----VDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGA 48 Query: 197 AAAVEQFNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 A+E +G+ + GR L V P P + + K++VGN+S Sbjct: 49 VRAIEALHGHELRPGRALVVEMSRPRPLNTW---------------------KIFVGNVS 87 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + L +LF +G+V++ V+ D + FV + AI+ L+G ++ G Sbjct: 88 AACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 554 RQI 562 ++I Sbjct: 140 KRI 142 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/81 (33%), Positives = 38/81 (46%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 RP K+FVGN+ S +L LFE+ G V +VV D + FV M Sbjct: 72 RPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEA 123 Query: 191 EVAAAVEQFNGYTFQGRPLRV 253 + AA+ Q NG +G+ + V Sbjct: 124 DAKAAIAQLNGKEVKGKRINV 144
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 50.4 bits (119), Expect = 3e-06 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 5/180 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEV---VYDRMTGR--SRGFGFVTMGSVEEVAA 202 +FV NL F+ S L F+ +V + G+ S GFGFV + ++ A Sbjct: 601 LFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQA 660 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 A++ +G + V + D R M + KL V NL + V Sbjct: 661 ALKVMDGQVLDAHKISVKASHRG-LDAAEERRREDMAKKAA----NQGTKLVVKNLPFEV 715 Query: 383 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 + LFS GK++ + I + + SRGF F + +A E NA ++L + GR++ Sbjct: 716 TKKEVRTLFSAYGKLVALR-IPKKFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRL 774 Score = 37.0 bits (84), Expect = 0.038 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGR-----SRGFGFVTYGSADEV 511 + L+V NL++ + L + F + AKV D + S GFGFV + + D+ Sbjct: 599 SSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQA 658 Query: 512 NNAISNLDGVDLDGRQI 562 A+ +DG LD +I Sbjct: 659 QAALKVMDGQVLDAHKI 675 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NLP T+ A+ F G V D +R GFV S E+ A AV+ Sbjct: 6 RIFVKNLPPTITEAEFRKHFSAEG-----RQVTDVKLIPARHIGFVGYKSAEDAARAVKY 60 Query: 215 FN 220 FN Sbjct: 61 FN 62
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 50.1 bits (118), Expect = 4e-06 Identities = 28/88 (31%), Positives = 49/88 (55%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 + PR T ++FVG + F + + L F Q GSV+ V++V DR G S+G+GFVT Sbjct: 23 SAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFE 81 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGP 265 + E+ +++ ++ + ++N GP Sbjct: 82 TQEDAQKILQEAEKLNYKDK--KLNIGP 107 Score = 47.0 bits (110), Expect = 4e-05 Identities = 19/72 (26%), Positives = 43/72 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N+++VG + + + S L FS+ G V + K++ DR +G S+G+GFVT+ + ++ + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 527 NLDGVDLDGRQI 562 + ++ +++ Sbjct: 92 EAEKLNYKDKKL 103
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 50.1 bits (118), Expect = 4e-06 Identities = 28/88 (31%), Positives = 49/88 (55%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 + PR T ++FVG + F + + L F Q GSV+ V++V DR G S+G+GFVT Sbjct: 23 SAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFE 81 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGP 265 + E+ +++ ++ + ++N GP Sbjct: 82 TQEDAQKILQEAEKLNYKDK--KLNIGP 107 Score = 47.0 bits (110), Expect = 4e-05 Identities = 19/72 (26%), Positives = 43/72 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N+++VG + + + S L FS+ G V + K++ DR +G S+G+GFVT+ + ++ + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 527 NLDGVDLDGRQI 562 + ++ +++ Sbjct: 92 EAEKLNYKDKKL 103
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/69 (39%), Positives = 41/69 (59%) Frame = +2 Query: 356 YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLD 535 +V LS + L+NLFS GKV+ AKV+ + S +R +GFVT +A+E I++L Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 536 GVDLDGRQI 562 +L G+ I Sbjct: 491 KTELHGKMI 499 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = +2 Query: 41 FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFN 220 +V L T + L LF + G V +VV + + +R +GFVTM + EE + + Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 221 GYTFQGRPLRVNSGPPPPRDEFAP 292 G+ + V P + P Sbjct: 491 KTELHGKMISVEKAKSEPAGKRVP 514
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 50.1 bits (118), Expect = 4e-06 Identities = 29/73 (39%), Positives = 42/73 (57%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 ++ KL V NL +GV ++ ++ LF+E G + A V YDR SGRS G V + + Sbjct: 102 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALK 160 Query: 518 AISNLDGVDLDGR 556 A+ +GV LDGR Sbjct: 161 AMKQYNGVPLDGR 173 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/73 (35%), Positives = 39/73 (53%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+ V NL F V A + LF + G+++ V YDR +GRS G V + A++Q Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 215 FNGYTFQGRPLRV 253 +NG GRP+ + Sbjct: 165 YNGVPLDGRPMNI 177
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 50.1 bits (118), Expect = 4e-06 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 6/183 (3%) Frame = +2 Query: 32 LKVFVGNLPFTVDSA-----QLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 +K+FVGN VD A +LA LF G+V V+ + F FV M Sbjct: 1 MKIFVGN----VDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGA 48 Query: 197 AAAVEQFNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 A+E +G+ + GR L V P P + + K++VGN+S Sbjct: 49 LRAIEALHGHELRPGRALVVEMSRPRPLNTW---------------------KIFVGNVS 87 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + L +LF +G+V++ V+ D + FV + AI+ L+G ++ G Sbjct: 88 AACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 554 RQI 562 ++I Sbjct: 140 KRI 142 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/81 (33%), Positives = 38/81 (46%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 RP K+FVGN+ S +L LFE+ G V +VV D + FV M Sbjct: 72 RPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEA 123 Query: 191 EVAAAVEQFNGYTFQGRPLRV 253 + AA+ Q NG +G+ + V Sbjct: 124 DAKAAIAQLNGKEVKGKRINV 144
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 50.1 bits (118), Expect = 4e-06 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 6/183 (3%) Frame = +2 Query: 32 LKVFVGNLPFTVDSA-----QLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 +K+FVGN VD A +LA LF G+V V+ + F FV M Sbjct: 1 MKIFVGN----VDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGA 48 Query: 197 AAAVEQFNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLS 373 A+E +G+ + GR L V P P + + K++VGN+S Sbjct: 49 LRAIEALHGHELRPGRALVVEMSRPRPLNTW---------------------KIFVGNVS 87 Query: 374 WGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 553 + L +LF +G+V++ V+ D + FV + AI+ L+G ++ G Sbjct: 88 AACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 554 RQI 562 ++I Sbjct: 140 KRI 142 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/81 (33%), Positives = 38/81 (46%) Frame = +2 Query: 11 RPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 RP K+FVGN+ S +L LFE+ G V +VV D + FV M Sbjct: 72 RPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEA 123 Query: 191 EVAAAVEQFNGYTFQGRPLRV 253 + AA+ Q NG +G+ + V Sbjct: 124 DAKAAIAQLNGKEVKGKRINV 144
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + L V NL++ TL +F + G+V D + DR + SRGF FV + + + Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70 Query: 518 AISNLDGVDLDGRQI 562 A+ +DG LDGR++ Sbjct: 71 AMDAMDGAVLDGREL 85 Score = 46.2 bits (108), Expect = 6e-05 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P P + V NL + L +FE+ G V V + DR T SRGF FV Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65 Query: 188 EEVAAAVEQFNGYTFQGRPLRV--------------NSGPPPPR 277 + A++ +G GR LRV GPPP R Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + L V NL++ TL +F + G+V D + DR + SRGF FV + + + Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 518 AISNLDGVDLDGRQI 562 A+ +DG LDGR++ Sbjct: 70 AMDAMDGAVLDGREL 84 Score = 46.2 bits (108), Expect = 6e-05 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P P + V NL + L +FE+ G V V + DR T SRGF FV Sbjct: 5 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 64 Query: 188 EEVAAAVEQFNGYTFQGRPLRV--------------NSGPPPPR 277 + A++ +G GR LRV GPPP R Sbjct: 65 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 108
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + L V NL++ TL +F + G+V D + DR + SRGF FV + + + Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 518 AISNLDGVDLDGRQI 562 A+ +DG LDGR++ Sbjct: 70 AMDAMDGAVLDGREL 84 Score = 46.2 bits (108), Expect = 6e-05 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P P + V NL + L +FE+ G V V + DR T SRGF FV Sbjct: 5 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 64 Query: 188 EEVAAAVEQFNGYTFQGRPLRV--------------NSGPPPPR 277 + A++ +G GR LRV GPPP R Sbjct: 65 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 108
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + L V NL++ TL +F + G+V D + DR + SRGF FV + + + Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 518 AISNLDGVDLDGRQI 562 A+ +DG LDGR++ Sbjct: 70 AMDAMDGAVLDGREL 84 Score = 46.2 bits (108), Expect = 6e-05 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P P + V NL + L +FE+ G V V + DR T SRGF FV Sbjct: 5 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 64 Query: 188 EEVAAAVEQFNGYTFQGRPLRV--------------NSGPPPPR 277 + A++ +G GR LRV GPPP R Sbjct: 65 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 108
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 + L V NL++ TL +F + G+V D + DR + SRGF FV + + + Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 518 AISNLDGVDLDGRQI 562 A+ +DG LDGR++ Sbjct: 70 AMDAMDGAVLDGREL 84 Score = 46.2 bits (108), Expect = 6e-05 Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 P P + V NL + L +FE+ G V V + DR T SRGF FV Sbjct: 5 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 64 Query: 188 EEVAAAVEQFNGYTFQGRPLRV--------------NSGPPPPR 277 + A++ +G GR LRV GPPP R Sbjct: 65 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 108
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 50.1 bits (118), Expect = 4e-06 Identities = 26/71 (36%), Positives = 38/71 (53%) Frame = +2 Query: 344 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 +++L+V NL + S LE +FS+ GK+ + V +D S S+GF +V Y D A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 524 SNLDGVDLDGR 556 LDG GR Sbjct: 360 KELDGKHFQGR 370 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/73 (28%), Positives = 39/73 (53%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NLP+ + L +F + G +E + V +D + S+GF +V + A ++ Sbjct: 302 RLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKE 361 Query: 215 FNGYTFQGRPLRV 253 +G FQGR + + Sbjct: 362 LDGKHFQGRLMHI 374 Score = 45.8 bits (107), Expect = 8e-05 Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 12/187 (6%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGR-----SRGFGFVTMGSVEEVAA 202 +FV NL F+ + + +F+ + R S GFGFV + + A Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 203 AVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKL-------YV 361 A+ +GY L V + + +AM D+A K+ + Sbjct: 659 ALAAMDGYKLDQHELVVRA------------SNKAMDAAEERRREDTAKKIAARRTKIII 706 Query: 362 GNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 541 NL + + +LF G++ +V D +RGFGF + SA E NA+ L Sbjct: 707 KNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNT 765 Query: 542 DLDGRQI 562 L GR++ Sbjct: 766 HLLGRRL 772
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 50.1 bits (118), Expect = 4e-06 Identities = 28/81 (34%), Positives = 44/81 (54%) Frame = +2 Query: 14 PSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEE 193 P P+ L V N+PF L +FE+ G V VE++++ S+GFGFVTM ++ Sbjct: 149 PDGPKRLHV--SNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQD 204 Query: 194 VAAAVEQFNGYTFQGRPLRVN 256 A ++ +G +GR + VN Sbjct: 205 AERARQELHGSMIEGRKIEVN 225 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D +L+V N+ + + L+ +F + G V D ++I++ S+GFGFVT + Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAER 207 Query: 518 AISNLDGVDLDGRQI 562 A L G ++GR+I Sbjct: 208 ARQELHGSMIEGRKI 222
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 49.7 bits (117), Expect = 6e-06 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Frame = +2 Query: 257 SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK-LYVGNLSWGVDNSTLENLFSEQGKVLD 433 SG D+ AP + S K L+V N+ + + L +F + GK+LD Sbjct: 85 SGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 144 Query: 434 AKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++I++ S+GFGFVT+ ++ + + A L G ++GR+I Sbjct: 145 VEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKI 185 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = +2 Query: 5 TPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 T S P+ L V N+PF L +F Q G + VE++++ S+GFGFVT + Sbjct: 109 TESKSQPKRLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFEN 164 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNS 259 + A E+ +G +GR + VN+ Sbjct: 165 SADADRAREKLHGTVVEGRKIEVNN 189
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 49.7 bits (117), Expect = 6e-06 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVG +P + +L LFE+AG + + ++ D +TG +RG+ FVT + E AV+ Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 215 FNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 +N + + G+ + V + N+L+VG++ Sbjct: 223 YNNHEIRSGKHIGVCISV-------------------------ANNRLFVGSIPKSKTKE 257 Query: 392 TLENLFSEQGKVLDAKVIYDR--DSGRSRGFGFVTY 493 + FS+ + L ++Y + D ++RGF F+ Y Sbjct: 258 QILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY 293 Score = 39.7 bits (91), Expect = 0.006 Identities = 26/115 (22%), Positives = 49/115 (42%) Frame = +2 Query: 179 GSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLY 358 G E A+ + GYT + G PPP ++ + P +++ Sbjct: 118 GPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSV------------GTEIF 165 Query: 359 VGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 VG + + L LF + G + D +++ D +G +RG+ FVT+ + + A+ Sbjct: 166 VGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Score = 35.0 bits (79), Expect = 0.15 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 2/178 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVG++P + Q+ F + ++Y + + + GF + + AA Q Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA--Q 301 Query: 215 FNGYTFQGRPLRV--NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 G+ ++V N G D P M L+V NL+ V Sbjct: 302 ARRRLMSGK-VKVWGNVGTVEWADPIEDPDPEVMA---------KVKVLFVRNLANTVTE 351 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LE FS+ GK+ K + D + F+ + D A+ ++G DL+G I Sbjct: 352 EILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENI 401 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Frame = +2 Query: 8 PRPSTPRXLKV-FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P P +KV FV NL TV L F Q G +E V+ + D + F+ Sbjct: 329 PDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDE 380 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPP 271 + A+E+ NG +G + + PP Sbjct: 381 RDGAVKAMEEMNGKDLEGENIEIVFAKPP 409
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 49.7 bits (117), Expect = 6e-06 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVG +P + +L LFE+AG + + ++ D +TG +RG+ FVT + E AV+ Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 215 FNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 +N + + G+ + V + N+L+VG++ Sbjct: 223 YNNHEIRSGKHIGVCISV-------------------------ANNRLFVGSIPKSKTKE 257 Query: 392 TLENLFSEQGKVLDAKVIYDR--DSGRSRGFGFVTY 493 + FS+ + L ++Y + D ++RGF F+ Y Sbjct: 258 QILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY 293 Score = 39.7 bits (91), Expect = 0.006 Identities = 26/115 (22%), Positives = 49/115 (42%) Frame = +2 Query: 179 GSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLY 358 G E A+ + GYT + G PPP ++ + P +++ Sbjct: 118 GPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSV------------GTEIF 165 Query: 359 VGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 523 VG + + L LF + G + D +++ D +G +RG+ FVT+ + + A+ Sbjct: 166 VGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Score = 35.4 bits (80), Expect = 0.11 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 2/178 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVG++P + Q+ F + ++Y + + + GF + + AA Q Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA--Q 301 Query: 215 FNGYTFQGRPLRV--NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 G+ ++V N G D P M L+V NL+ V Sbjct: 302 ARRRLMSGK-VKVWGNVGTVEWADPIEDPDPEVMA---------KVKVLFVRNLANTVTE 351 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LE FS+ GK+ K + D + F+ + D A+ ++G DL+G I Sbjct: 352 EILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENI 401 Score = 34.7 bits (78), Expect = 0.19 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Frame = +2 Query: 8 PRPSTPRXLKV-FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P P +KV FV NL TV L F Q G +E V+ + D + F+ Sbjct: 329 PDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDE 380 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPP 271 + A+E+ NG +G + + PP Sbjct: 381 RDGAVKAMEEMNGKDLEGENIEIVFAKPP 409
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 49.7 bits (117), Expect = 6e-06 Identities = 25/73 (34%), Positives = 37/73 (50%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FV NLP+T L LF + G + + D +T + +GF F+T E A + Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462 Query: 215 FNGYTFQGRPLRV 253 +G FQGR L V Sbjct: 463 VDGQVFQGRMLHV 475 Score = 48.9 bits (115), Expect = 1e-05 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 5/180 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGR---SRGFGFVTMGSVEEVAAAV 208 +F+ NL F +L +F + G+V+ + + S GFGFV E+ A+ Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 209 EQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 +Q G+ G L V E A + + + +K+ V N+ + + Sbjct: 792 KQLQGHVVDGHKLEVRIS------ERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHS 845 Query: 389 STLENLFSEQGKVLDAKVIYDRD-SGRSRGFGFVTYGSADEVNNAISNL-DGVDLDGRQI 562 + LFS G++ ++ +G RGFGFV + + + A + L L GR++ Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905 Score = 47.4 bits (111), Expect = 3e-05 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 6/145 (4%) Frame = +2 Query: 146 GRSRGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTP------RA 307 G G+ FV + EEV A++ Y GR + V P + AP+ R Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREY-MGGRYIEVFREKNVPTTKGAPKNTTKSWQGRI 388 Query: 308 MXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFV 487 + + +L+V NL + LE LFS+ G + + D + + +GF F+ Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448 Query: 488 TYGSADEVNNAISNLDGVDLDGRQI 562 T+ + A S +DG GR + Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRML 473 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++ V NLP + + LF G++ + + + G+ R FGF+ S EE A + Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 215 FN 220 FN Sbjct: 62 FN 63
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 49.7 bits (117), Expect = 6e-06 Identities = 38/164 (23%), Positives = 61/164 (37%) Frame = +2 Query: 47 GNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGY 226 G P T D L L + G + + + D+ T + +G+GFV S AV Sbjct: 64 GLQPGTTDQ-DLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKAS 122 Query: 227 TFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENL 406 Q + + P LY+ NL +D LE + Sbjct: 123 GVQAQMAKQQEQDP--------------------------TNLYISNLPLSMDEQELEGM 156 Query: 407 FSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 G+V+ +++ D SG SRG GF S ++ I++ +G Sbjct: 157 LKPFGQVISTRILRDT-SGASRGVGFARMESTEKCEAIITHFNG 199 Score = 46.2 bits (108), Expect = 6e-05 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NLP ++D +L G+ + G V ++ D +G SRG GF M S E+ A + F Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGASRGVGFARMESTEKCEAIITHF 197 Query: 218 NG 223 NG Sbjct: 198 NG 199 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Frame = +2 Query: 221 GYTFQGRPLRV--NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNST 394 GY + L V PP PR+ P + S LY+ L G + Sbjct: 15 GYNKNNKKLYVAQQMAPPSPRNS-TPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQD 73 Query: 395 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 L L GK++ K I D+ + + +G+GFV + S A++ L Sbjct: 74 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTAL 119
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 49.7 bits (117), Expect = 6e-06 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVG +P + +L LFE+AG + + ++ D +TG +RG+ FVT + E AV+ Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132 Query: 215 FNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNS 391 +N + + G+ + V + N+L+VG++ Sbjct: 133 YNNHEIRSGKHIGVCISV-------------------------ANNRLFVGSIPKSKTKE 167 Query: 392 TLENLFSEQGKVLDAKVIYDR--DSGRSRGFGFVTY 493 + FS+ + L ++Y + D ++RGF F+ Y Sbjct: 168 QILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY 203 Score = 36.6 bits (83), Expect = 0.050 Identities = 20/88 (22%), Positives = 40/88 (45%) Frame = +2 Query: 260 GPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAK 439 G PPP ++ + P +++VG + + L LF + G + D + Sbjct: 55 GGPPPDSVYSGQQPSV------------GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLR 102 Query: 440 VIYDRDSGRSRGFGFVTYGSADEVNNAI 523 ++ D +G +RG+ FVT+ + + A+ Sbjct: 103 LMMDPLTGLNRGYAFVTFCTKEAAQEAV 130 Score = 35.0 bits (79), Expect = 0.15 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 2/178 (1%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++FVG++P + Q+ F + ++Y + + + GF + + AA Q Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA--Q 211 Query: 215 FNGYTFQGRPLRV--NSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDN 388 G+ ++V N G D P M L+V NL+ V Sbjct: 212 ARRRLMSGK-VKVWGNVGTVEWADPIEDPDPEVMA---------KVKVLFVRNLANTVTE 261 Query: 389 STLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 LE FS+ GK+ K + D + F+ + D A+ ++G DL+G I Sbjct: 262 EILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENI 311 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Frame = +2 Query: 8 PRPSTPRXLKV-FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 P P +KV FV NL TV L F Q G +E V+ + D + F+ Sbjct: 239 PDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDE 290 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNSGPPP 271 + A+E+ NG +G + + PP Sbjct: 291 RDGAVKAMEEMNGKDLEGENIEIVFAKPP 319
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 49.3 bits (116), Expect = 7e-06 Identities = 38/164 (23%), Positives = 61/164 (37%) Frame = +2 Query: 47 GNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGY 226 G P T D L L + G + + + D+ T + +G+GFV S AV Sbjct: 62 GLQPGTTDQ-DLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS 120 Query: 227 TFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENL 406 Q + + P LY+ NL +D LE + Sbjct: 121 GVQAQMAKQQEQDP--------------------------TNLYISNLPLSMDEQELEGM 154 Query: 407 FSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 538 G+V+ +++ D SG SRG GF S ++ I++ +G Sbjct: 155 LKPFGQVISTRILRDT-SGTSRGVGFARMESTEKCEAIITHFNG 197 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/81 (32%), Positives = 42/81 (51%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +++ NLP ++D +L G+ + G V ++ D +G SRG GF M S E+ A + F Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGTSRGVGFARMESTEKCEAIITHF 195 Query: 218 NGYTFQGRPLRVNSGPPPPRD 280 N G+ ++ G P P D Sbjct: 196 N-----GKYIKTPPGVPAPSD 211 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/90 (26%), Positives = 38/90 (42%) Frame = +2 Query: 263 PPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKV 442 PP P + TP + N LY+ L G + L L GK++ K Sbjct: 33 PPSPSNS----TPNSSSGSNGNDQLSKTN-LYIRGLQPGTTDQDLVKLCQPYGKIVSTKA 87 Query: 443 IYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 I D+ + + +G+GFV + S A++ L Sbjct: 88 ILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 49.3 bits (116), Expect = 7e-06 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Frame = +2 Query: 257 SGPPPPRDEFAPRTPRAMXXXXXXXSFDSANK-LYVGNLSWGVDNSTLENLFSEQGKVLD 433 SG D+ AP + S K L+V N+ + + L +F + GK+LD Sbjct: 86 SGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 145 Query: 434 AKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 ++I++ S+GFGFVT+ ++ + + A L G ++GR+I Sbjct: 146 VEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKI 186 Score = 47.0 bits (110), Expect = 4e-05 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = +2 Query: 5 TPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 184 T S P+ L V N+PF L +F Q G + VE++++ S+GFGFVT + Sbjct: 110 TENKSQPKRLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFEN 165 Query: 185 VEEVAAAVEQFNGYTFQGRPLRVNS 259 + A E+ +G +GR + VN+ Sbjct: 166 SADADRAREKLHGTVVEGRKIEVNN 190
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 49.3 bits (116), Expect = 7e-06 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 19/109 (17%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE-- 211 VFVG + +D ++ F + GSV+ V+++ DR TG S+G+GFV+ + +V VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQ 100 Query: 212 -QFNG----------------YTFQGRPLRVNSGPPPPRDEFAPRTPRA 307 F+G Y Q RPL N PPPP+ + +P A Sbjct: 101 INFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNP-PPPPQFQSVWSSPNA 148 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/61 (29%), Positives = 37/61 (60%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N ++VG + +D + + + F+ G V + K+I DR +G S+G+GFV++ + +V + Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 98 Query: 527 N 529 + Sbjct: 99 S 99
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 49.3 bits (116), Expect = 7e-06 Identities = 24/75 (32%), Positives = 43/75 (57%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D KL++G L+ + L+ +F + G + + +I DR S +SRGF F+T+ + + N Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKN 63 Query: 518 AISNLDGVDLDGRQI 562 A +++G L G+ I Sbjct: 64 AAKDMNGKSLHGKAI 78 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 1/141 (0%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+F+G L + L +F + G + V ++ DR T +SRGF F+T + + A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 215 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXX-XXSFDSANKLYVGNLSWGVDNS 391 NG + G+ ++V P R P A S SA G W + Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSH- 126 Query: 392 TLENLFSEQGKVLDAKVIYDR 454 E + G D K+ Y R Sbjct: 127 --EGHLDDGGYTPDLKMSYSR 145
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 49.3 bits (116), Expect = 7e-06 Identities = 24/77 (31%), Positives = 46/77 (59%) Frame = +2 Query: 332 SFDSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEV 511 S + +L+V N+ + + L +F + GK+LD ++I++ S+GFGFVT+ ++ + Sbjct: 116 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADA 173 Query: 512 NNAISNLDGVDLDGRQI 562 + A L G ++GR+I Sbjct: 174 DRAREKLHGTVVEGRKI 190 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/81 (34%), Positives = 44/81 (54%) Frame = +2 Query: 17 STPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEV 196 STP+ L V N+PF L +F Q G + VE++++ S+GFGFVT + + Sbjct: 118 STPKRLHV--SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADA 173 Query: 197 AAAVEQFNGYTFQGRPLRVNS 259 A E+ +G +GR + VN+ Sbjct: 174 DRAREKLHGTVVEGRKIEVNN 194
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/72 (41%), Positives = 37/72 (51%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 VFVGNL V L LF QAG + V + DR G+ + FGFV E V+ A+ Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALL 70 Query: 218 NGYTFQGRPLRV 253 NG GRP+ V Sbjct: 71 NGIRLYGRPINV 82 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/70 (35%), Positives = 39/70 (55%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 ++VGNL V L LF + G + + DR+ G+ + FGFV + + V+ AI+ L Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 533 DGVDLDGRQI 562 +G+ L GR I Sbjct: 71 NGIRLYGRPI 80
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 48.9 bits (115), Expect = 1e-05 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Frame = +2 Query: 26 RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAA 205 R ++F+G LP + +L L E+ G + + ++ D G +RG+ FVT + +E A Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNA 112 Query: 206 VEQFNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 ++Q N Y + GR L V S D+ +L+VG + Sbjct: 113 IKQLNNYEIRNGRLLGV------------------------CASVDNC-RLFVGGIP--- 144 Query: 383 DNSTLENLFSEQGKVLDAKV---IYD--RDSGRSRGFGFVTYGS 499 E + SE KV + V +Y D ++RGF FV Y S Sbjct: 145 KTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYES 188 Score = 42.0 bits (97), Expect = 0.001 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = +2 Query: 188 EEVAAAVEQFNGYTF-QGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVG 364 E A+ Q GY+ Q R GPPP D P + ++++G Sbjct: 17 EAALRALVQRTGYSLVQENGQRKYGGPPPGWDTTPP---------------ERGCEIFIG 61 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVD 544 L + L L + GK+ + +++ D + G +RG+ FVT+ + E NAI L+ + Sbjct: 62 KLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYE 120 Query: 545 L 547 + Sbjct: 121 I 121 Score = 33.5 bits (75), Expect = 0.43 Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 6/182 (3%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTG--RSRGFGFVTMGSVEEVAAAV 208 ++FVG +P T ++ ++ + +VY ++RGF FV S A A Sbjct: 137 RLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMAR 196 Query: 209 EQFNGYTFQ--GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSWGV 382 + Q G P+ V+ P + + S LYV NL Sbjct: 197 RRLLPGRIQLWGHPIAVDWAEPEVEVD--------------EDTMSSVKILYVRNLMLST 242 Query: 383 DNSTLENLFS--EQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 +E F+ + G V K I R + FV + + ++ A+ L+G LDG Sbjct: 243 SEEMIEKEFNSIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 294 Query: 557 QI 562 I Sbjct: 295 PI 296 Score = 31.6 bits (70), Expect = 1.6 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFE--QAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 ++V NL + + F + G+VE V+ + D + FV + E+ A++ Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRT 298 NG G P+ V P +D + T Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYT 313
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/89 (34%), Positives = 45/89 (50%) Frame = +2 Query: 2 ATPRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 A P PS P VGNL F + L F + V + +V D +T RSRGFG+V Sbjct: 85 AIPIPSEPP-FTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFE 141 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGPP 268 + + ++AA+ +G GRP+R+ P Sbjct: 142 TADTLSAAL-ALSGEDLMGRPVRITVAEP 169 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/69 (37%), Positives = 43/69 (62%) Frame = +2 Query: 356 YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLD 535 +VGNLS+ + + L + F E V +++ D + RSRGFG+V + +AD ++ A++ L Sbjct: 97 HVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LS 153 Query: 536 GVDLDGRQI 562 G DL GR + Sbjct: 154 GEDLMGRPV 162
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 19/97 (19%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE-- 211 VFVG + +D ++ F + GSV+ V+++ DR TG S+G+GFV+ + +V VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 212 -QFNG----------------YTFQGRPLRVNSGPPP 271 F+G Y Q RPL N PPP Sbjct: 101 INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPP 137 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/61 (29%), Positives = 37/61 (60%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N ++VG + +D + + + F+ G V + K+I DR +G S+G+GFV++ + +V + Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 527 N 529 + Sbjct: 99 S 99
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 19/97 (19%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE-- 211 VFVG + +D ++ F + GSV+ V+++ DR TG S+G+GFV+ + +V VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 212 -QFNG----------------YTFQGRPLRVNSGPPP 271 F+G Y Q RPL N PPP Sbjct: 101 INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPP 137 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/61 (29%), Positives = 37/61 (60%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N ++VG + +D + + + F+ G V + K+I DR +G S+G+GFV++ + +V + Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 527 N 529 + Sbjct: 99 S 99
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/73 (39%), Positives = 41/73 (56%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 ++ KL V NL +GV ++ ++ LF+E G + A V YDR SGRS G V + + Sbjct: 72 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALK 130 Query: 518 AISNLDGVDLDGR 556 A+ GV LDGR Sbjct: 131 AMKQYKGVPLDGR 143 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 K+ V NL F V A + LF + G+++ V YDR +GRS G V + A++Q Sbjct: 76 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 134 Query: 215 FNGYTFQGRPLRV 253 + G GRP+ + Sbjct: 135 YKGVPLDGRPMDI 147
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 48.5 bits (114), Expect = 1e-05 Identities = 21/67 (31%), Positives = 38/67 (56%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 ++VG ++ + L LFS+ G +L K+IYD+ G G+GF++Y + + I L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 533 DGVDLDG 553 +G ++G Sbjct: 257 NGRTVNG 263 Score = 47.4 bits (111), Expect = 3e-05 Identities = 19/73 (26%), Positives = 41/73 (56%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FVG + ++ +L+ LF + G + ++++YD+ G G+GF++ + + +++ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 218 NGYTFQGRPLRVN 256 NG T G L +N Sbjct: 257 NGRTVNGSTLFIN 269 Score = 34.7 bits (78), Expect = 0.19 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +2 Query: 155 RGFGFVTMGSVEEVAAAVEQFNGYTFQGRPLRVN 256 +G+GF+ + + E+ AA+E FNG+ + G L VN Sbjct: 381 KGYGFIKLINHEQALAAIETFNGFMWHGNRLVVN 414 Score = 33.1 bits (74), Expect = 0.56 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 19/91 (20%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIY-------------------DRDSGRS 469 + LYV ++ + L + + G+++ KVI D G S Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 470 RGFGFVTYGSADEVNNAISNLDGVDLDGRQI 562 RG+GFV++ S + AI N DG + Q+ Sbjct: 600 RGYGFVSFESPLDAAKAILNTDGYQVSKDQV 630
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 48.1 bits (113), Expect = 2e-05 Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 5/182 (2%) Frame = +2 Query: 32 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVY-----DRMTGRSRGFGFVTMGSVEEV 196 + +F+ NL F S QL F+ + +V + S GFGFV + E+ Sbjct: 640 VSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQA 699 Query: 197 AAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGNLSW 376 A + +G G +++ + R K+ V NL + Sbjct: 700 TAVISAMDGTVIDGHKIQLKL------------SHRQGNAGSQEKKKAKNGKIIVKNLPF 747 Query: 377 GVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGR 556 + LF+ G++ +V D +RGF FV + E NA+ L GV L GR Sbjct: 748 EATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVHLLGR 806 Query: 557 QI 562 ++ Sbjct: 807 RL 808 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQ 214 ++F+ N+ ++ LF G ++ V V D TG S+GF +V EE A + Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 215 FNGYTFQGRPLRV 253 + FQGR L + Sbjct: 386 LDKQIFQGRLLHI 398 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 +L++ N+ + + LFS G++ + V D +G S+GF +V + +E A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 530 LDGVDLDGR 556 LD GR Sbjct: 386 LDKQIFQGR 394
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/86 (31%), Positives = 47/86 (54%) Frame = +2 Query: 8 PRPSTPRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSV 187 PR T ++FVG + F + L F Q GSV+ V++V DR G S+G+GF+T + Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQ 83 Query: 188 EEVAAAVEQFNGYTFQGRPLRVNSGP 265 E+ +++ ++ + ++N GP Sbjct: 84 EDAQKILQEAEKLNYKDK--KLNIGP 107 Score = 45.4 bits (106), Expect = 1e-04 Identities = 17/72 (23%), Positives = 43/72 (59%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 526 N+++VG + + + + L FS+ G V + K++ DR +G S+G+GF+T+ + ++ + Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQ 91 Query: 527 NLDGVDLDGRQI 562 + ++ +++ Sbjct: 92 EAEKLNYKDKKL 103
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/71 (35%), Positives = 43/71 (60%) Frame = +2 Query: 350 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 529 +L+VGNL V++ +L FSE ++ KV+ DR+ G++RGFGFV++ +D+ A Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89 Query: 530 LDGVDLDGRQI 562 +G + R + Sbjct: 90 KNGKYIGSRPV 100 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/78 (33%), Positives = 42/78 (53%) Frame = +2 Query: 23 PRXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAA 202 P ++FVGNL V+ L F + S+ +VV DR G++RGFGFV+ ++ Sbjct: 27 PNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLK 85 Query: 203 AVEQFNGYTFQGRPLRVN 256 A + NG RP++++ Sbjct: 86 AWREKNGKYIGSRPVKLS 103
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Frame = +2 Query: 11 RPSTPRXLK---VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMG 181 RP T + L ++VG+LP + QL FEQ G V + V + TG S+G+GFV Sbjct: 35 RPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFE 94 Query: 182 SVEEVAAAVEQFNGYTFQGRPLRVNSGPP 268 E E N Y R ++ + PP Sbjct: 95 CDEVAKIVAETMNNYLMGERIIKCHVIPP 123 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/74 (35%), Positives = 40/74 (54%) Frame = +2 Query: 341 SANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 520 S LYVG+L G+ L++ F + GKVL +V + +G S+G+GFV + DEV Sbjct: 43 SPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEF-ECDEVAKI 101 Query: 521 ISNLDGVDLDGRQI 562 ++ L G +I Sbjct: 102 VAETMNNYLMGERI 115
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = +2 Query: 35 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSR----GFGFVTMGSVEEVAA 202 +VFVG L + +++ LFE G+V V + + R+ +R G FVT + E+V Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 203 AVEQFNGYTFQGRPLRVNSGPP 268 A+E NG T R + V P Sbjct: 105 AIETLNGKTLDDREIVVQKARP 126 Score = 33.5 bits (75), Expect = 0.43 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 12/76 (15%) Frame = +2 Query: 347 NKLYVGNLSWGVDNSTLENLFSEQGKV------------LDAKVIYDRDSGRSRGFGFVT 490 N +YV LS + N L+ +F + ++ + R RGFGFV+ Sbjct: 205 NSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVS 264 Query: 491 YGSADEVNNAISNLDG 538 + +A++ + AI ++G Sbjct: 265 FANAEDQSRAIEEMNG 280 Score = 32.0 bits (71), Expect = 1.2 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 149 RSRGFGFVTMGSVEEVAAAVEQFNG 223 R RGFGFV+ + E+ + A+E+ NG Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNG 280
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/75 (26%), Positives = 41/75 (54%) Frame = +2 Query: 338 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 517 D+ L+V +++ S L F G + ++Y++ SG+ RG+ F+ Y ++++ Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159 Query: 518 AISNLDGVDLDGRQI 562 A + DG +DGR++ Sbjct: 160 AYKHADGKKIDGRRV 174 Score = 38.5 bits (88), Expect = 0.013 Identities = 17/73 (23%), Positives = 39/73 (53%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 +FV + + ++L FE G ++ + +VY++ +G+ RG+ F+ ++ +A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 218 NGYTFQGRPLRVN 256 +G GR + V+ Sbjct: 165 DGKKIDGRRVLVD 177
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/77 (33%), Positives = 37/77 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG L VD L F G + +++ D T + RGF FV E+ AAA++ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 218 NGYTFQGRPLRVNSGPP 268 N GR +RVN P Sbjct: 68 NESELFGRTIRVNLAKP 84 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/70 (35%), Positives = 39/70 (55%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 LYVG L+ VD+ L F G + D ++ D ++ + RGF FV + A++ AI N+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 533 DGVDLDGRQI 562 + +L GR I Sbjct: 68 NESELFGRTI 77
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/77 (33%), Positives = 37/77 (48%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG L VD L F G + +++ D T + RGF FV E+ AAA++ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 218 NGYTFQGRPLRVNSGPP 268 N GR +RVN P Sbjct: 68 NESELFGRTIRVNLAKP 84 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/70 (35%), Positives = 39/70 (55%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 LYVG L+ VD+ L F G + D ++ D ++ + RGF FV + A++ AI N+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 533 DGVDLDGRQI 562 + +L GR I Sbjct: 68 NESELFGRTI 77
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/70 (35%), Positives = 38/70 (54%) Frame = +2 Query: 353 LYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNL 532 +YVG L+ V L N F G + D ++ D +S R RGF F+ Y +++ AI N+ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 533 DGVDLDGRQI 562 + +L GR I Sbjct: 68 NDSELCGRTI 77 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQF 217 ++VG L V L F G + +++ D + R RGF F+ E+ AAA++ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 218 NGYTFQGRPLRVNSGPP--PPRDEFAP 292 N GR +RVN P D F P Sbjct: 68 NDSELCGRTIRVNLAKPVRVKEDSFKP 94
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 47.4 bits (111), Expect = 3e-05 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 8/169 (4%) Frame = +2 Query: 17 STP--RXLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 190 STP R ++F+G LP + +L L E+ G + + ++ D G +RG+ FVT + + Sbjct: 49 STPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQ 107 Query: 191 EVAAAVEQFNGYTFQ-GRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVGN 367 E A++Q N Y + GR L V S D+ +L+ G Sbjct: 108 EAKNAIKQLNNYEIRTGRLLGV------------------------CASVDNC-RLFRGG 142 Query: 368 LSWGVDNSTLENLFSEQGKVLDAKV---IYD--RDSGRSRGFGFVTYGS 499 + E + SE KV + V +Y D ++RGF FV Y S Sbjct: 143 IP---KTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYES 188 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = +2 Query: 188 EEVAAAVEQFNGYTF-QGRPLRVNSGPPPPRDEFAPRTPRAMXXXXXXXSFDSANKLYVG 364 E A+ Q GY+ Q R GPPP D P + ++++G Sbjct: 17 EAALRALVQRTGYSLVQENGQRKYGGPPPGWDSTPP---------------ERGCEIFIG 61 Query: 365 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVD 544 L + L L + GK+ + +++ D + G +RG+ FVT+ + E NAI L+ + Sbjct: 62 KLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYE 120 Query: 545 L 547 + Sbjct: 121 I 121 Score = 31.6 bits (70), Expect = 1.6 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = +2 Query: 38 VFVGNLPFTVDSAQLAGLFE--QAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 211 ++V NL + + F + G+VE V+ + D + FV + E+ A++ Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284 Query: 212 QFNGYTFQGRPLRVNSGPPPPRDEFAPRT 298 NG G P+ V P +D + T Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYT 313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,070,385 Number of Sequences: 219361 Number of extensions: 1752613 Number of successful extensions: 8633 Number of sequences better than 10.0: 451 Number of HSP's better than 10.0 without gapping: 6997 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8215 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
