ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags28p13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468972.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1206 Score = 329 bits (166), Expect = 4e-87 Identities = 280/318 (88%) Strand = Plus / Plus Query: 3 ctctgcaactcggtgcggctcatcgggacggtgggcaccgacatcgagctgcgccagctc 62 ||||||||||| || |||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 270 ctctgcaactccgttcggctcatcgggacggtgggcaccgaggtggagctgcggcagctg 329 Query: 63 cccagcggcgcctccgtcgcgcgggggcgcattgccgtctggaagtcggccaccgagacc 122 |||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 330 cccagcggcggctccgtcgcgcgggggcgcctcgccatctggaagtcggccaccgagacc 389 Query: 123 acatgggtaactcttgcattttgggacgacttggctgttgtggcctctgagcatgttaaa 182 |||||||| ||||| ||||||||||| ||| | || |||||||| ||||||||||| || Sbjct: 390 acatgggtgactctagcattttgggatgacctagcggttgtggcttctgagcatgtgaag 449 Query: 183 cagggagaccgcatatttgtttctggacggcttgtatcagatactgttgatgaggggcct 242 |||| ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||| Sbjct: 450 aagggtgaccgaatatttgtttctggacgccttgtgtcggacactgttgatgagggccct 509 Query: 243 gagaagcggcaggtttactacaaggttgtcgttcaacagttcaacttcattgagtccttc 302 ||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct: 510 gagaaacgacaggtttattataaggttgtggttcaacagttcaatttcattgagtccttt 569 Query: 303 cagcctgtgcggttatat 320 |||| |||| ||||||| Sbjct: 570 cagcaagtgcagttatat 587
>dbj|AK068169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H11, full insert sequence Length = 1208 Score = 329 bits (166), Expect = 4e-87 Identities = 280/318 (88%) Strand = Plus / Plus Query: 3 ctctgcaactcggtgcggctcatcgggacggtgggcaccgacatcgagctgcgccagctc 62 ||||||||||| || |||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 272 ctctgcaactccgttcggctcatcgggacggtgggcaccgaggtggagctgcggcagctg 331 Query: 63 cccagcggcgcctccgtcgcgcgggggcgcattgccgtctggaagtcggccaccgagacc 122 |||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 332 cccagcggcggctccgtcgcgcgggggcgcctcgccatctggaagtcggccaccgagacc 391 Query: 123 acatgggtaactcttgcattttgggacgacttggctgttgtggcctctgagcatgttaaa 182 |||||||| ||||| ||||||||||| ||| | || |||||||| ||||||||||| || Sbjct: 392 acatgggtgactctagcattttgggatgacctagcggttgtggcttctgagcatgtgaag 451 Query: 183 cagggagaccgcatatttgtttctggacggcttgtatcagatactgttgatgaggggcct 242 |||| ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||| Sbjct: 452 aagggtgaccgaatatttgtttctggacgccttgtgtcggacactgttgatgagggccct 511 Query: 243 gagaagcggcaggtttactacaaggttgtcgttcaacagttcaacttcattgagtccttc 302 ||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct: 512 gagaaacgacaggtttattataaggttgtggttcaacagttcaatttcattgagtccttt 571 Query: 303 cagcctgtgcggttatat 320 |||| |||| ||||||| Sbjct: 572 cagcaagtgcagttatat 589
>dbj|AK059181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G01, full insert sequence Length = 1323 Score = 329 bits (166), Expect = 4e-87 Identities = 280/318 (88%) Strand = Plus / Plus Query: 3 ctctgcaactcggtgcggctcatcgggacggtgggcaccgacatcgagctgcgccagctc 62 ||||||||||| || |||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 256 ctctgcaactccgttcggctcatcgggacggtgggcaccgaggtggagctgcggcagctg 315 Query: 63 cccagcggcgcctccgtcgcgcgggggcgcattgccgtctggaagtcggccaccgagacc 122 |||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 316 cccagcggcggctccgtcgcgcgggggcgcctcgccatctggaagtcggccaccgagacc 375 Query: 123 acatgggtaactcttgcattttgggacgacttggctgttgtggcctctgagcatgttaaa 182 |||||||| ||||| ||||||||||| ||| | || |||||||| ||||||||||| || Sbjct: 376 acatgggtgactctagcattttgggatgacctagcggttgtggcttctgagcatgtgaag 435 Query: 183 cagggagaccgcatatttgtttctggacggcttgtatcagatactgttgatgaggggcct 242 |||| ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||| Sbjct: 436 aagggtgaccgaatatttgtttctggacgccttgtgtcggacactgttgatgagggccct 495 Query: 243 gagaagcggcaggtttactacaaggttgtcgttcaacagttcaacttcattgagtccttc 302 ||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct: 496 gagaaacgacaggtttattataaggttgtggttcaacagttcaatttcattgagtccttt 555 Query: 303 cagcctgtgcggttatat 320 |||| |||| ||||||| Sbjct: 556 cagcaagtgcagttatat 573
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 163 bits (82), Expect = 5e-37 Identities = 115/126 (91%) Strand = Plus / Minus Query: 3 ctctgcaactcggtgcggctcatcgggacggtgggcaccgacatcgagctgcgccagctc 62 ||||||||||| || |||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 24106612 ctctgcaactccgttcggctcatcgggacggtgggcaccgaggtggagctgcggcagctg 24106553 Query: 63 cccagcggcgcctccgtcgcgcgggggcgcattgccgtctggaagtcggccaccgagacc 122 |||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 24106552 cccagcggcggctccgtcgcgcgggggcgcctcgccatctggaagtcggccaccgagacc 24106493 Query: 123 acatgg 128 |||||| Sbjct: 24106492 acatgg 24106487 Score = 115 bits (58), Expect = 1e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 127 gggtaactcttgcattttgggacgacttggctgttgtggcctctgagcatgttaaacagg 186 |||| ||||| ||||||||||| ||| | || |||||||| ||||||||||| || ||| Sbjct: 24105782 gggtgactctagcattttgggatgacctagcggttgtggcttctgagcatgtgaagaagg 24105723 Query: 187 gagaccgcatatttgtttctggacggcttgtatcagatactgttgatgaggggcctgaga 246 | ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||||||| Sbjct: 24105722 gtgaccgaatatttgtttctggacgccttgtgtcggacactgttgatgagggccctgaga 24105663 Query: 247 agcggcaggtttactacaaggt 268 | || |||||||| || ||||| Sbjct: 24105662 aacgacaggtttattataaggt 24105641 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 265 aggttgtcgttcaacagttcaacttcattgagtccttccagcctgtgcggttatat 320 ||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||| Sbjct: 24105561 aggttgtggttcaacagttcaatttcattgagtcctttcagcaagtgcagttatat 24105506 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cctccgtcgcgcgggggcgc 92 |||||||||||||||||||| Sbjct: 13211147 cctccgtcgcgcgggggcgc 13211166
>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete sequence Length = 140980 Score = 163 bits (82), Expect = 5e-37 Identities = 115/126 (91%) Strand = Plus / Plus Query: 3 ctctgcaactcggtgcggctcatcgggacggtgggcaccgacatcgagctgcgccagctc 62 ||||||||||| || |||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 117220 ctctgcaactccgttcggctcatcgggacggtgggcaccgaggtggagctgcggcagctg 117279 Query: 63 cccagcggcgcctccgtcgcgcgggggcgcattgccgtctggaagtcggccaccgagacc 122 |||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 117280 cccagcggcggctccgtcgcgcgggggcgcctcgccatctggaagtcggccaccgagacc 117339 Query: 123 acatgg 128 |||||| Sbjct: 117340 acatgg 117345 Score = 115 bits (58), Expect = 1e-22 Identities = 121/142 (85%) Strand = Plus / Plus Query: 127 gggtaactcttgcattttgggacgacttggctgttgtggcctctgagcatgttaaacagg 186 |||| ||||| ||||||||||| ||| | || |||||||| ||||||||||| || ||| Sbjct: 118050 gggtgactctagcattttgggatgacctagcggttgtggcttctgagcatgtgaagaagg 118109 Query: 187 gagaccgcatatttgtttctggacggcttgtatcagatactgttgatgaggggcctgaga 246 | ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||||||| Sbjct: 118110 gtgaccgaatatttgtttctggacgccttgtgtcggacactgttgatgagggccctgaga 118169 Query: 247 agcggcaggtttactacaaggt 268 | || |||||||| || ||||| Sbjct: 118170 aacgacaggtttattataaggt 118191 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 265 aggttgtcgttcaacagttcaacttcattgagtccttccagcctgtgcggttatat 320 ||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||| Sbjct: 118271 aggttgtggttcaacagttcaatttcattgagtcctttcagcaagtgcagttatat 118326
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 163 bits (82), Expect = 5e-37 Identities = 115/126 (91%) Strand = Plus / Minus Query: 3 ctctgcaactcggtgcggctcatcgggacggtgggcaccgacatcgagctgcgccagctc 62 ||||||||||| || |||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 24022899 ctctgcaactccgttcggctcatcgggacggtgggcaccgaggtggagctgcggcagctg 24022840 Query: 63 cccagcggcgcctccgtcgcgcgggggcgcattgccgtctggaagtcggccaccgagacc 122 |||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 24022839 cccagcggcggctccgtcgcgcgggggcgcctcgccatctggaagtcggccaccgagacc 24022780 Query: 123 acatgg 128 |||||| Sbjct: 24022779 acatgg 24022774 Score = 115 bits (58), Expect = 1e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 127 gggtaactcttgcattttgggacgacttggctgttgtggcctctgagcatgttaaacagg 186 |||| ||||| ||||||||||| ||| | || |||||||| ||||||||||| || ||| Sbjct: 24022069 gggtgactctagcattttgggatgacctagcggttgtggcttctgagcatgtgaagaagg 24022010 Query: 187 gagaccgcatatttgtttctggacggcttgtatcagatactgttgatgaggggcctgaga 246 | ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||||||| Sbjct: 24022009 gtgaccgaatatttgtttctggacgccttgtgtcggacactgttgatgagggccctgaga 24021950 Query: 247 agcggcaggtttactacaaggt 268 | || |||||||| || ||||| Sbjct: 24021949 aacgacaggtttattataaggt 24021928 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 265 aggttgtcgttcaacagttcaacttcattgagtccttccagcctgtgcggttatat 320 ||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||| Sbjct: 24021848 aggttgtggttcaacagttcaatttcattgagtcctttcagcaagtgcagttatat 24021793 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cctccgtcgcgcgggggcgc 92 |||||||||||||||||||| Sbjct: 13207922 cctccgtcgcgcgggggcgc 13207941
>ref|XM_483121.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3315 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gctccccagcggcgcctccgtcgc 82 |||||||||||||| ||||||||| Sbjct: 2358 gctccccagcggcgactccgtcgc 2381
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cctccgtcgcgcgggggcgc 92 |||||||||||||||||||| Sbjct: 15491 cctccgtcgcgcgggggcgc 15472
>emb|Z84484.1|HS50J22 Human DNA sequence from clone RP1-50J22 on chromosome 6p21 Contains the gene for a novel protein similar to GS2, transport secretion protein 2.1 and 2.2 (TTS-2.1, TTS-2.2) and mouse adiponutrin (Adpn), the gene for ETS transcription factor TEL-2a (TEL-2), three novel genes and a CpG island, complete sequence Length = 146746 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gtaactcttgcattttggga 148 |||||||||||||||||||| Sbjct: 24133 gtaactcttgcattttggga 24114
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gcggcgcctccgtcgcgcgg 86 |||||||||||||||||||| Sbjct: 280462 gcggcgcctccgtcgcgcgg 280443
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gctccccagcggcgcctccgtcgc 82 |||||||||||||| ||||||||| Sbjct: 24374291 gctccccagcggcgactccgtcgc 24374314
>ref|NM_131094.1| Danio rerio human E12 homolog (e12), mRNA Length = 2232 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 gacggtgggcaccgacatcgagct 52 |||||||||||||||||| ||||| Sbjct: 231 gacggtgggcaccgacatggagct 254
>emb|X76997.1|DRZFE12 D.rerio mRNA for DNA-binding protein E12 Length = 2232 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 gacggtgggcaccgacatcgagct 52 |||||||||||||||||| ||||| Sbjct: 231 gacggtgggcaccgacatggagct 254
>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686H11 Length = 135273 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gctccccagcggcgcctccgtcgc 82 |||||||||||||| ||||||||| Sbjct: 114595 gctccccagcggcgactccgtcgc 114618
>dbj|AK110374.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-C03, full insert sequence Length = 2914 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gctccccagcggcgcctccgtcgc 82 |||||||||||||| ||||||||| Sbjct: 2440 gctccccagcggcgactccgtcgc 2463
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gccagctccccagcggcgcc 74 |||||||||||||||||||| Sbjct: 478643 gccagctccccagcggcgcc 478662
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cctccgtcgcgcgggggcgc 92 |||||||||||||||||||| Sbjct: 108694 cctccgtcgcgcgggggcgc 108675 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,377,440 Number of Sequences: 3902068 Number of extensions: 2377440 Number of successful extensions: 39783 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39690 Number of HSP's gapped (non-prelim): 93 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
