ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags28o04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 9e-67
2dbj|AK071207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 2e-64
3gb|AY104187.1| Zea mays PCO068792 mRNA sequence 246 5e-62
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 244 2e-61
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 244 2e-61
6emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220... 244 2e-61
7emb|AL450468.6| Human DNA sequence from clone RP11-195M16 on chr... 44 0.39
8emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in l... 42 1.5
9gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map M... 40 6.0
10gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, com... 40 6.0
11gb|AC122895.5| Mus musculus BAC clone RP23-69K14 from chromosome... 40 6.0
12gb|AC099415.4| Mus musculus BAC clone RP23-122D8 from chromosome... 40 6.0
13emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 i... 40 6.0
14gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosom... 40 6.0
15gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome... 40 6.0
16gb|AC131942.1| Mus musculus BAC clone RP24-478A20 from 3, comple... 40 6.0
17emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018 40 6.0
18emb|AL591435.10| Human DNA sequence from clone RP11-712I22 on ch... 40 6.0
19gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, com... 40 6.0
20emb|AL731677.9| Mouse DNA sequence from clone RP23-41J17 on chro... 40 6.0
21gb|AC103749.2| Homo sapiens chromosome 15, clone RP11-4F5, compl... 40 6.0
22emb|BX323816.6| Zebrafish DNA sequence from clone DKEY-38N6, com... 40 6.0
23gb|AC092278.3| Homo sapiens chromosome 5 clone CTD-2012B7, compl... 40 6.0
24gb|AC108038.3| Homo sapiens BAC clone RP11-176N15 from 4, comple... 40 6.0
25emb|BX539340.7| Zebrafish DNA sequence from clone DKEY-57K2 in l... 40 6.0
26gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, com... 40 6.0
27gb|AC108491.4| Homo sapiens BAC clone RP11-138I17 from 4, comple... 40 6.0
28emb|BX548167.10| Zebrafish DNA sequence from clone DKEY-46L15 in... 40 6.0
29emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, ... 40 6.0
30dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23,... 40 6.0
31gb|AF240627.1|AF240627 Homo sapiens chromosome 21 map 21q21 clon... 40 6.0
32gb|AE001439.1| Helicobacter pylori J99, complete genome 40 6.0
33emb|AJ310130.1|MRO310130 Microtus rossiaemeridionalis 33kb genom... 40 6.0
34emb|AJ310129.1|MAR310129 Microtus arvalis 31kb genomic sequence ... 40 6.0
35emb|AJ310127.1|MTR310127 Microtus transcaspicus 37 kb genomic se... 40 6.0
36gb|AE000511.1| Helicobacter pylori 26695, complete genome 40 6.0
37gb|AC165443.5| Mus musculus BAC clone RP23-95F15 from chromosome... 40 6.0
38gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, comple... 40 6.0
39emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 ... 40 6.0
40emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chro... 40 6.0
41emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chrom... 40 6.0
42emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chr... 40 6.0 
>dbj|AK103925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D01, full
            insert sequence
          Length = 1631

 Score =  262 bits (132), Expect = 9e-67
 Identities = 213/240 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    ggcaccagctacctattcaggattttgttgttcgcaacgacatggcttgtgggtcaacaa 60
            ||||||| |||||||| ||||||||||||||||| |||||||||| |||||| ||||| |
Sbjct: 1252 ggcaccatctacctatacaggattttgttgttcggaacgacatgggttgtggttcaacca 1311

                                                                        
Query: 61   tcgggccaatacttgctagtggtgttggtattcgtactgtggatgttggagcgccacaat 120
            |||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 1312 tcggcccaatactagctagtggtgttggtattcgtactgtggatattggagcaccacaat 1371

                                                                        
Query: 121  tgtcgatgcacagcatcagggagatgtgcgccgttgacgacatcagtcactcatatgaac 180
            |||||||||||||||||||||| ||||| || || || |||||||  ||||| || ||||
Sbjct: 1372 tgtcgatgcacagcatcagggaaatgtgtgctgtcgatgacatcaagcactcgtacgaac 1431

                                                                        
Query: 181  attttaaggcatattttgaagaattcactgaattggataacaaagtcaaagtagactgct 240
            | || ||||||||||| ||||| |||||||||||||| | |||||| |||||||| ||||
Sbjct: 1432 acttcaaggcatatttcgaagagttcactgaattggacagcaaagttaaagtagattgct 1491
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>dbj|AK071207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088P07, full
            insert sequence
          Length = 1731

 Score =  254 bits (128), Expect = 2e-64
 Identities = 212/240 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    ggcaccagctacctattcaggattttgttgttcgcaacgacatggcttgtgggtcaacaa 60
            ||||||| |||||||| |||||||||| |||||| |||||||||| |||||| ||||| |
Sbjct: 1348 ggcaccatctacctatacaggattttgctgttcggaacgacatgggttgtggttcaacca 1407

                                                                        
Query: 61   tcgggccaatacttgctagtggtgttggtattcgtactgtggatgttggagcgccacaat 120
            |||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 1408 tcggcccaatactagctagtggtgttggtattcgtactgtggatattggagcaccacaat 1467

                                                                        
Query: 121  tgtcgatgcacagcatcagggagatgtgcgccgttgacgacatcagtcactcatatgaac 180
            |||||||||||||||||||||| ||||| || || || |||||||  ||||| || ||||
Sbjct: 1468 tgtcgatgcacagcatcagggaaatgtgtgctgtcgatgacatcaagcactcgtacgaac 1527

                                                                        
Query: 181  attttaaggcatattttgaagaattcactgaattggataacaaagtcaaagtagactgct 240
            | || ||||||||||| ||||| |||||||||||||| | |||||| |||||||| ||||
Sbjct: 1528 acttcaaggcatatttcgaagagttcactgaattggacagcaaagttaaagtagattgct 1587
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>gb|AY104187.1| Zea mays PCO068792 mRNA sequence
          Length = 1046

 Score =  246 bits (124), Expect = 5e-62
 Identities = 193/216 (89%)
 Strand = Plus / Plus

                                                                       
Query: 3   caccagctacctattcaggattttgttgttcgcaacgacatggcttgtgggtcaacaatc 62
           |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| 
Sbjct: 651 caccagctacctatacaggattttgttgttcgcaatgacatggcttgtggttcaacaatt 710

                                                                       
Query: 63  gggccaatacttgctagtggtgttggtattcgtactgtggatgttggagcgccacaattg 122
           || ||||||||||||||||||||||||||||| ||||| ||| ||||||| || ||||| 
Sbjct: 711 ggcccaatacttgctagtggtgttggtattcgcactgttgatattggagcaccccaatta 770

                                                                       
Query: 123 tcgatgcacagcatcagggagatgtgcgccgttgacgacatcagtcactcatatgaacat 182
           || |||||||||||||| || ||||| |||| |||||| || ||  |||||||||| |||
Sbjct: 771 tcaatgcacagcatcagagaaatgtgtgccgctgacgatattagctactcatatgagcat 830

                                               
Query: 183 tttaaggcatattttgaagaattcactgaattggat 218
           || |||||||||||||||||||| ||||||||||||
Sbjct: 831 ttcaaggcatattttgaagaatttactgaattggat 866
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  244 bits (123), Expect = 2e-61
 Identities = 198/223 (88%)
 Strand = Plus / Minus

                                                                           
Query: 18      caggattttgttgttcgcaacgacatggcttgtgggtcaacaatcgggccaatacttgct 77
               ||||||||||||||||| |||||||||| |||||| ||||| ||||| |||||||| |||
Sbjct: 7483821 caggattttgttgttcggaacgacatgggttgtggttcaaccatcggcccaatactagct 7483762

                                                                           
Query: 78      agtggtgttggtattcgtactgtggatgttggagcgccacaattgtcgatgcacagcatc 137
               ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 7483761 agtggtgttggtattcgtactgtggatattggagcaccacaattgtcgatgcacagcatc 7483702

                                                                           
Query: 138     agggagatgtgcgccgttgacgacatcagtcactcatatgaacattttaaggcatatttt 197
               ||||| ||||| || || || |||||||  ||||| || ||||| || ||||||||||| 
Sbjct: 7483701 agggaaatgtgtgctgtcgatgacatcaagcactcgtacgaacacttcaaggcatatttc 7483642

                                                          
Query: 198     gaagaattcactgaattggataacaaagtcaaagtagactgct 240
               ||||| |||||||||||||| | |||||| |||||||| ||||
Sbjct: 7483641 gaagagttcactgaattggacagcaaagttaaagtagattgct 7483599
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  244 bits (123), Expect = 2e-61
 Identities = 198/223 (88%)
 Strand = Plus / Minus

                                                                           
Query: 18      caggattttgttgttcgcaacgacatggcttgtgggtcaacaatcgggccaatacttgct 77
               ||||||||||||||||| |||||||||| |||||| ||||| ||||| |||||||| |||
Sbjct: 7483700 caggattttgttgttcggaacgacatgggttgtggttcaaccatcggcccaatactagct 7483641

                                                                           
Query: 78      agtggtgttggtattcgtactgtggatgttggagcgccacaattgtcgatgcacagcatc 137
               ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 7483640 agtggtgttggtattcgtactgtggatattggagcaccacaattgtcgatgcacagcatc 7483581

                                                                           
Query: 138     agggagatgtgcgccgttgacgacatcagtcactcatatgaacattttaaggcatatttt 197
               ||||| ||||| || || || |||||||  ||||| || ||||| || ||||||||||| 
Sbjct: 7483580 agggaaatgtgtgctgtcgatgacatcaagcactcgtacgaacacttcaaggcatatttc 7483521

                                                          
Query: 198     gaagaattcactgaattggataacaaagtcaaagtagactgct 240
               ||||| |||||||||||||| | |||||| |||||||| ||||
Sbjct: 7483520 gaagagttcactgaattggacagcaaagttaaagtagattgct 7483478
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>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 98782

 Score =  244 bits (123), Expect = 2e-61
 Identities = 198/223 (88%)
 Strand = Plus / Minus

                                                                         
Query: 18    caggattttgttgttcgcaacgacatggcttgtgggtcaacaatcgggccaatacttgct 77
             ||||||||||||||||| |||||||||| |||||| ||||| ||||| |||||||| |||
Sbjct: 73497 caggattttgttgttcggaacgacatgggttgtggttcaaccatcggcccaatactagct 73438

                                                                         
Query: 78    agtggtgttggtattcgtactgtggatgttggagcgccacaattgtcgatgcacagcatc 137
             ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 73437 agtggtgttggtattcgtactgtggatattggagcaccacaattgtcgatgcacagcatc 73378

                                                                         
Query: 138   agggagatgtgcgccgttgacgacatcagtcactcatatgaacattttaaggcatatttt 197
             ||||| ||||| || || || |||||||  ||||| || ||||| || ||||||||||| 
Sbjct: 73377 agggaaatgtgtgctgtcgatgacatcaagcactcgtacgaacacttcaaggcatatttc 73318

                                                        
Query: 198   gaagaattcactgaattggataacaaagtcaaagtagactgct 240
             ||||| |||||||||||||| | |||||| |||||||| ||||
Sbjct: 73317 gaagagttcactgaattggacagcaaagttaaagtagattgct 73275
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>emb|AL450468.6| Human DNA sequence from clone RP11-195M16 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene and the CSF1 gene for
             colony stimulating factor 1 (macrophage), complete
             sequence
          Length = 116796

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 172   catatgaacattttaaggcatatttt 197
             ||||||||||||||||||| ||||||
Sbjct: 27781 catatgaacattttaaggcctatttt 27806
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>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete
              sequence
          Length = 219280

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    ttaaggcatattttgaagaat 204
              |||||||||||||||||||||
Sbjct: 162742 ttaaggcatattttgaagaat 162762
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>gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map MAP_LOC, complete
             sequence
          Length = 73587

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   gattatataatgtttgagaa 367
             ||||||||||||||||||||
Sbjct: 16970 gattatataatgtttgagaa 16951
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>gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, complete sequence
          Length = 148599

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   tttgaagaattcactgaatt 214
             ||||||||||||||||||||
Sbjct: 90857 tttgaagaattcactgaatt 90876
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>gb|AC122895.5| Mus musculus BAC clone RP23-69K14 from chromosome 18, complete sequence
          Length = 215539

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tattcgtactgtggatgttg 108
              ||||||||||||||||||||
Sbjct: 162554 tattcgtactgtggatgttg 162573
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>gb|AC099415.4| Mus musculus BAC clone RP23-122D8 from chromosome 8, complete sequence
          Length = 215488

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ttatataatgtttgagaaca 369
             ||||||||||||||||||||
Sbjct: 86518 ttatataatgtttgagaaca 86499
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>emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 in linkage group 6,
             complete sequence
          Length = 236737

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   ctgtactttcacaaacacag 314
             ||||||||||||||||||||
Sbjct: 11904 ctgtactttcacaaacacag 11923
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>gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosome 2, complete sequence
          Length = 189633

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   ttttaaggcatattttgaagaatt 205
             |||||| |||||||||||||||||
Sbjct: 79307 ttttaaagcatattttgaagaatt 79330
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>gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome 1, complete sequence
          Length = 230067

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    ctgaattggataacaaagtc 227
              ||||||||||||||||||||
Sbjct: 163814 ctgaattggataacaaagtc 163795
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>gb|AC131942.1| Mus musculus BAC clone RP24-478A20 from 3, complete sequence
          Length = 209411

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   acattttaaggcatattttg 198
             ||||||||||||||||||||
Sbjct: 29938 acattttaaggcatattttg 29919
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>emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    aacattttaaggcatatttt 197
              ||||||||||||||||||||
Sbjct: 228506 aacattttaaggcatatttt 228525
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>emb|AL591435.10| Human DNA sequence from clone RP11-712I22 on chromosome X, complete
              sequence
          Length = 138038

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    tgagaacacatgaataaatc 381
              ||||||||||||||||||||
Sbjct: 117266 tgagaacacatgaataaatc 117247
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>gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, complete sequence
          Length = 181930

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    tttgaagaattcactgaatt 214
              ||||||||||||||||||||
Sbjct: 130886 tttgaagaattcactgaatt 130905
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>emb|AL731677.9| Mouse DNA sequence from clone RP23-41J17 on chromosome 11, complete
             sequence
          Length = 97297

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 355   taatgtttgagaacacatgaataa 378
             ||||||||||||| ||||||||||
Sbjct: 20311 taatgtttgagaatacatgaataa 20288
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>gb|AC103749.2| Homo sapiens chromosome 15, clone RP11-4F5, complete sequence
          Length = 190678

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 168   cactcatatgaacattttaaggcatatt 195
             ||||||||||||  ||||||||||||||
Sbjct: 98083 cactcatatgaagtttttaaggcatatt 98110
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>emb|BX323816.6| Zebrafish DNA sequence from clone DKEY-38N6, complete sequence
          Length = 190532

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    ctgtactttcacaaacacag 314
              ||||||||||||||||||||
Sbjct: 153860 ctgtactttcacaaacacag 153841
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>gb|AC092278.3| Homo sapiens chromosome 5 clone CTD-2012B7, complete sequence
          Length = 123469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   atgaacattttaaggcatat 194
             ||||||||||||||||||||
Sbjct: 30059 atgaacattttaaggcatat 30078
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>gb|AC108038.3| Homo sapiens BAC clone RP11-176N15 from 4, complete sequence
          Length = 140854

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   atatgaacattttaaggcatattt 196
             ||||||||||||| ||||||||||
Sbjct: 88123 atatgaacattttcaggcatattt 88146
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>emb|BX539340.7| Zebrafish DNA sequence from clone DKEY-57K2 in linkage group 2, complete
              sequence
          Length = 234470

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    tttgaagaattcactgaatt 214
              ||||||||||||||||||||
Sbjct: 166591 tttgaagaattcactgaatt 166572
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>gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, complete sequence
          Length = 171462

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 168   cactcatatgaacattttaaggcatatt 195
             ||||||||||||  ||||||||||||||
Sbjct: 15941 cactcatatgaagtttttaaggcatatt 15914
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>gb|AC108491.4| Homo sapiens BAC clone RP11-138I17 from 4, complete sequence
          Length = 133452

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   gaatagctatgcatatttgt 433
             ||||||||||||||||||||
Sbjct: 54720 gaatagctatgcatatttgt 54701
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>emb|BX548167.10| Zebrafish DNA sequence from clone DKEY-46L15 in linkage group 20,
              complete sequence
          Length = 135292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    atgtttgagaacacatgaat 376
              ||||||||||||||||||||
Sbjct: 120888 atgtttgagaacacatgaat 120907
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>emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, complete sequence
          Length = 170736

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   atatgaacattttaaggcatattt 196
             ||||||||||||||||||| ||||
Sbjct: 88510 atatgaacattttaaggcaaattt 88487
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>dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23, map 22, complete
             sequences
          Length = 179114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   aacattttaaggcatatttt 197
             ||||||||||||||||||||
Sbjct: 30237 aacattttaaggcatatttt 30256
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>gb|AF240627.1|AF240627 Homo sapiens chromosome 21 map 21q21 clone B650K3, complete sequence
          Length = 170770

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    aacattttaaggcatatttt 197
              ||||||||||||||||||||
Sbjct: 130662 aacattttaaggcatatttt 130681
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     acttgctagtggtgttggta 90
              ||||||||||||||||||||
Sbjct: 386388 acttgctagtggtgttggta 386407
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>emb|AJ310130.1|MRO310130 Microtus rossiaemeridionalis 33kb genomic sequence encoding Xist gene,
             complete sequence
          Length = 33026

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ctattcaggattttgttgtt 32
             ||||||||||||||||||||
Sbjct: 10336 ctattcaggattttgttgtt 10355
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>emb|AJ310129.1|MAR310129 Microtus arvalis 31kb genomic sequence encoding Xist gene, complete
            sequence
          Length = 31277

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   ctattcaggattttgttgtt 32
            ||||||||||||||||||||
Sbjct: 7031 ctattcaggattttgttgtt 7050
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>emb|AJ310127.1|MTR310127 Microtus transcaspicus 37 kb genomic sequence encoding Xist gene,
             complete sequence
          Length = 37120

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ctattcaggattttgttgtt 32
             ||||||||||||||||||||
Sbjct: 11223 ctattcaggattttgttgtt 11242
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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      acttgctagtggtgttggta 90
               ||||||||||||||||||||
Sbjct: 1129984 acttgctagtggtgttggta 1129965
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>gb|AC165443.5| Mus musculus BAC clone RP23-95F15 from chromosome 1, complete
            sequence
          Length = 174254

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  ctgaattggataacaaagtc 227
            ||||||||||||||||||||
Sbjct: 1330 ctgaattggataacaaagtc 1311
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>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence
          Length = 197108

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    ataatgcataacaattagtaatgt 345
              ||||||||||||||| ||||||||
Sbjct: 131140 ataatgcataacaatgagtaatgt 131163
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>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3,
             complete sequence
          Length = 139040

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   aatgcataacaattagtaat 343
             ||||||||||||||||||||
Sbjct: 49095 aatgcataacaattagtaat 49076
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>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete
             sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   ttttaaggcatattttgaagaatt 205
             |||||| |||||||||||||||||
Sbjct: 72856 ttttaaagcatattttgaagaatt 72879
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>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete
             sequence
          Length = 189829

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   aacattttaaggcatatttt 197
             ||||||||||||||||||||
Sbjct: 87535 aacattttaaggcatatttt 87516
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>emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chromosome X, complete
              sequence
          Length = 231530

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    ttggctcagtagctctcctg 281
              ||||||||||||||||||||
Sbjct: 221348 ttggctcagtagctctcctg 221329


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,135,948
Number of Sequences: 3902068
Number of extensions: 4135948
Number of successful extensions: 89244
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89101
Number of HSP's gapped (non-prelim): 143
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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