ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags29d03 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 296 bits (759), Expect = 3e-80 Identities = 139/205 (67%), Positives = 172/205 (83%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 + F TSLYVGDLD +V D+QLFD F Q+G VV+VRVCRD+ +R+SLGY YVN+ P DA Sbjct: 31 TQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 ARA++ LN+ P+ G+PIR+MYS+RDPS+R+SG NIFIKNLD+SID+KALHDTF FGNI Sbjct: 91 ARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNI 150 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 +SCKVA D +G+SKGYGFVQY +E+A AIEKLNGML+NDK+VYVGPF+R+QERD++ Sbjct: 151 VSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN 210 Query: 570 SVKFNNVYVKNLAETTTEDDLKEIF 644 KF NVYVKNLAE+TT+DDLK F Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAF 235 Score = 120 bits (302), Expect = 3e-27 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 16/217 (7%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A ++++ +LD S+ L D F+ G +VS +V D +S +S GY +V Y A +A+ Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAI 181 Query: 222 EMLNFTPINGRPIRI----MYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 E LN +N + + + RD + K+ N+++KNL +S + L + F +G I Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 241 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---- 557 S V D G+SKG+GFV +E + A A+E LNG +DK+ YVG +K ER+ Sbjct: 242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301 Query: 558 --------NSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 + + +N+YVKNL + +++ LKEIF Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIF 338 Score = 100 bits (249), Expect = 4e-21 Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 16/186 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++YV +L S D L + F + G + S V +D KS G+ +VN+ DAARA+E Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVE 273 Query: 225 MLNFTPINGRP---------------IRIMYS-NRDPSLRKSGTANIFIKNLDKSIDNKA 356 LN + + +R+ Y N + K ++N+++KNLD SI ++ Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L + F FG + S KV DP G SKG GFV + E A A+ +L+G ++ K +YV Sbjct: 334 LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393 Query: 537 VRKQER 554 RK++R Sbjct: 394 QRKEDR 399
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 256 bits (653), Expect = 5e-68 Identities = 129/204 (63%), Positives = 158/204 (77%), Gaps = 2/204 (0%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P +SLY GDLD V +A LFD+F + VVSVRVCRD +R+SLGYAY+N++ P DA RA Sbjct: 47 PNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRA 105 Query: 219 LEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSC 398 +E LN+TP+ RPIRIM SNRDPS R SG NIFIKNLD SIDNKAL +TF FG ILSC Sbjct: 106 MEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165 Query: 399 KVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE--RDNSPGS 572 KVA D G SKGYGFVQ+E++E+A AAI+KLNGMLMNDK+V+VG F+R+QE RD + + Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225 Query: 573 VKFNNVYVKNLAETTTEDDLKEIF 644 +F NVYVKNL + ED+L++ F Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTF 249 Score = 118 bits (295), Expect = 2e-26 Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 18/217 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF+ F+ G ++S +V DVT R S GY +V + A A++ Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDK 195 Query: 228 LNFTPIN------GRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 LN +N G IR RD + N+++KNL K I L TF FG I Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK-------- 545 S V D +G S+ +GFV +E EAA +A+EK+NG+ + D +YVG +K Sbjct: 256 SSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELR 315 Query: 546 ----QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 QER N + N+Y+KNL ++ ++ LKE+F Sbjct: 316 RKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMF 352 Score = 95.1 bits (235), Expect = 2e-19 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 16/186 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++YV +L + + +L F + G + S V RD S S + +VN+ AA A+E Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVE 287 Query: 225 MLNFTPINGRPIRI----MYSNRDPSLR------------KSGTANIFIKNLDKSIDNKA 356 +N + + + S R+ LR KS AN+++KNLD S+D++ Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L + F +GN+ S KV +P G S+G+GFV Y E A A+ ++NG ++ K +Y+ Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407 Query: 537 VRKQER 554 RK++R Sbjct: 408 QRKEDR 413
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 253 bits (646), Expect = 3e-67 Identities = 128/204 (62%), Positives = 156/204 (76%), Gaps = 2/204 (0%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P +SLYVGDLD SV ++ L D+F Q+ V ++RVCRD+T R SLGYAYVN+ P DA+RA Sbjct: 43 PNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHR-SLGYAYVNFANPEDASRA 101 Query: 219 LEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSC 398 +E LN+ PI RPIRIM SNRDPS R SG N+FIKNLD SIDNKAL++TF FG ILSC Sbjct: 102 MESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 161 Query: 399 KVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV- 575 KVA D G SKGYGFVQ+E++E A AAI+KLNGML+NDK+V+VG FVR+Q+R S Sbjct: 162 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV 221 Query: 576 -KFNNVYVKNLAETTTEDDLKEIF 644 F NVYVKNL + T+D+LK+ F Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTF 245 Score = 112 bits (281), Expect = 7e-25 Identities = 67/217 (30%), Positives = 119/217 (54%), Gaps = 18/217 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L++ F+ G ++S +V DV R S GY +V + A A++ Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKGYGFVQFEKEETAQAAIDK 191 Query: 228 LNFTPINGRPIRIMYSNR--DPSLRKSGTA----NIFIKNLDKSIDNKALHDTFCVFGNI 389 LN +N + + + + R D + +SG N+++KNL K I + L TF +G+I Sbjct: 192 LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI 251 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK-------- 545 S V D +G S+ +GFV + EAA A+EK+NG+ + + +YVG +K Sbjct: 252 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELR 311 Query: 546 ----QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 QER + ++ +N+Y+KNL ++ ++ LKE+F Sbjct: 312 RKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMF 348 Score = 95.9 bits (237), Expect = 9e-20 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 16/186 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++YV +L + D +L F + G + S V +D S S + +VN+ +P AA A+E Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 283 Query: 225 MLNFTPINGRPIRI----MYSNRDPSLR------------KSGTANIFIKNLDKSIDNKA 356 +N + + + S+R+ LR K +N+++KNLD S++++ Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L + F +GN+ SCKV + G S+G+GFV Y E A A++++NG ++ K +YV Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403 Query: 537 VRKQER 554 RK+ER Sbjct: 404 QRKEER 409
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 251 bits (640), Expect = 2e-66 Identities = 125/207 (60%), Positives = 156/207 (75%), Gaps = 2/207 (0%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 SS+P SLYVGDL V +A L++ F+ G V+S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 RAL+ +NF I G+PIRIM+S RDPSLRKSG N+FIKNLDKSIDNKAL+DTF FGNI Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LSCKV D G SKGY FV +E EAA AIEK+NGML+ND+KV+VG F ++ER+ G Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 Query: 570 --SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LKE+F Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELF 211 Score = 118 bits (296), Expect = 1e-26 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GYA+V++ T A +A+E Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157 Query: 228 LNFTPINGRPIRI-MYSNRDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + + +R + G N++IKN + +D+++L + F FG Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV DP G+SKG+GFV YE+ E A+ A+E++NG ++ K ++VG +K ER + Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER-QAEL 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+Y+KNL +T ++ L++ F Sbjct: 277 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314 Score = 100 bits (248), Expect = 5e-21 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 16/204 (7%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + V D L ++F+Q G +SV+V RD KS G+ +V+Y DA +A+E Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVE 249 Query: 225 MLNFTPINGRPI----------------RIMYSNRDPSLRKSGTANIFIKNLDKSIDNKA 356 +N I+G+ I R + + + N++IKNLD +ID++ Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F FG+I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368 Query: 537 VRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 369 QRKEER-----KAHLTNQYMQRVA 387
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 250 bits (639), Expect = 2e-66 Identities = 124/206 (60%), Positives = 156/206 (75%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 RAL+ +NF I G+P+RIM+S RDPSLRKSG NIFIKNLDKSIDNKAL+DTF FGNIL Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SCKV D G SKGYGFV +E EAA AIEK+NGML+ND+KV+VG F ++ER+ G Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LKE+F Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELF 211 Score = 117 bits (294), Expect = 2e-26 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GY +V++ T A RA+E Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + R+ L R N++IKN + +D++ L + F FG Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD +G+SKG+GFV +ER E A A++++NG +N K++YVG +K ER Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL- 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+YVKNL + ++ L++ F Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314 Score = 95.1 bits (235), Expect = 2e-19 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L ++F + G +SV+V D S KS G+ +V++ DA +A++ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 225 MLNFTPINGRPIRIMYSNR-----------------DPSLRKSGTANIFIKNLDKSIDNK 353 +N +NG+ I + + + D R G N+++KNLD ID++ Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 308 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F FG I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 309 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 368 AQRKEER-----QAHLTNQYMQRMA 387 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER 458 +PS A++++ +L + L++ F G ILS +V D S GY +V +++ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 A A++ +N ++ K V + +RD S N+++KNL ++ L + Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117 Query: 639 IF 644 F Sbjct: 118 TF 119
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 250 bits (638), Expect = 3e-66 Identities = 124/206 (60%), Positives = 156/206 (75%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 RAL+ +NF I G+P+RIM+S RDPSLRKSG NIFIKNLDKSIDNKAL+DTF FGNIL Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SCKV D G SKGYGFV +E EAA AIEK+NGML+ND+KV+VG F ++ER+ G Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LKE+F Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELF 211 Score = 118 bits (295), Expect = 2e-26 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GY +V++ T A RA+E Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + R+ L R N++IKN + +D++ L + F FG Sbjct: 158 MNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD +G+SKG+GFV +ER E A A++++NG +N K++YVG +K ER Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL- 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+YVKNL + ++ L++ F Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314 Score = 95.1 bits (235), Expect = 2e-19 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L ++F + G +SV+V D S KS G+ +V++ DA +A++ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 225 MLNFTPINGRPIRIMYSNR-----------------DPSLRKSGTANIFIKNLDKSIDNK 353 +N +NG+ I + + + D R G N+++KNLD ID++ Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 308 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F FG I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 309 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 368 AQRKEER-----QAHLTNQYMQRMA 387 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER 458 +PS A++++ +L + L++ F G ILS +V D S GY +V +++ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 A A++ +N ++ K V + +RD S N+++KNL ++ L + Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117 Query: 639 IF 644 F Sbjct: 118 TF 119
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 250 bits (638), Expect = 3e-66 Identities = 121/201 (60%), Positives = 154/201 (76%), Gaps = 2/201 (0%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 SLYVGDL V ++ LFD F+ G V+S+RVCRDV +R+SLGYAYVN+ PADA RAL+ Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF + +PIRIM+S RDPSLR+SG N+FIKNLD++IDNKA++DTF FGNILSCKVA Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG--SVKF 581 TD G SKGYGFV +E +EAA+ +I+K+NGML+N KKVYVG F+ ++ER+ G + F Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182 Query: 582 NNVYVKNLAETTTEDDLKEIF 644 NVYVKN E ++ LKE F Sbjct: 183 TNVYVKNFTEDFDDEKLKEFF 203 Score = 101 bits (252), Expect = 2e-21 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD ++ + ++D F+ G ++S +V D S GY +V++ T A +++ Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDK 149 Query: 228 LNFTPINGRPIR----IMYSNRDPSLRKSGT--ANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +NG+ + I R+ L + N+++KN + D++ L + F +G I Sbjct: 150 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI 209 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMND-KKVYVGPFVRKQERDNS- 563 S KV + G+SKG+GFV +E EAA AA++ LNG M + K +YV +K ER Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269 Query: 564 -----------PGSVKFNNVYVKNLAETTTEDDLKEIF 644 SV N+YVKNL +T +D L+ F Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAF 307 Score = 84.3 bits (207), Expect = 3e-16 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 17/187 (9%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++YV + D +L + F G + S +V KS G+ +V + T A A++ Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDG-KSKGFGFVAFETTEAAEAAVQ 241 Query: 225 MLNFTPIN-GRPIRIMYSN----RDPSLRKSGT------------ANIFIKNLDKSIDNK 353 LN + G+ + + + R L++ N+++KNLD +ID+ Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F +GNI S KV TD G SKG+GFV + A A+ +LNG ++ K +YV Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361 Query: 534 FVRKQER 554 RK+ER Sbjct: 362 AQRKEER 368
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 249 bits (636), Expect = 5e-66 Identities = 123/206 (59%), Positives = 156/206 (75%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 7 SYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 RAL+ +NF I GRP+RIM+S RDPSLRKSG NIFIKNLDKSIDNKAL+DTF FGNIL Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SCKV D G SKGYGFV +E EAA AI+K+NGML+ND+KV+VG F ++ER+ G Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN + ++ LKE+F Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMF 211 Score = 109 bits (273), Expect = 6e-24 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GY +V++ T A RA++ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + R+ L R N++IKN ++++ L + F +G Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD G+SKG+GFV +ER E A A++++NG MN K ++VG +K ER Sbjct: 218 LSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTEL- 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+YVKNL + ++ L++ F Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314 Score = 91.7 bits (226), Expect = 2e-18 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 17/205 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L ++F + G +SV+V D + KS G+ +V++ DA +A++ Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVD 249 Query: 225 MLNFTPINGRPI-----------------RIMYSNRDPSLRKSGTANIFIKNLDKSIDNK 353 +N +NG+ + + +D R G N+++KNLD ID++ Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 308 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F FG I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 309 RLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 368 AQRKEER-----QAHLTNQYMQRMA 387 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER 458 +PS A++++ +L + + L++ F G ILS +V D S GY +V +++ Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 A A++ +N ++ + V + +RD S N+++KNL ++ L + Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117 Query: 639 IF 644 F Sbjct: 118 TF 119
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 249 bits (636), Expect = 5e-66 Identities = 123/206 (59%), Positives = 156/206 (75%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 RAL+ +NF I G+P+RIM+S RDPSLRKSG NIFIKNLDKSIDNKAL+DTF FGNIL Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SCKV D G SKGYGFV +E EAA AIEK+NGML+ND+KV+VG F ++ER+ G Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LK++F Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLF 211 Score = 119 bits (298), Expect = 8e-27 Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GY +V++ T A RA+E Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + R+ L R N++IKN + +D++ L D F FG Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD +G+SKG+GFV +ER E A A++++NG +N K++YVG +K ER Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL- 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+YVKNL + ++ L++ F Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314 Score = 96.7 bits (239), Expect = 5e-20 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L D+F + G +SV+V D S KS G+ +V++ DA +A++ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 225 MLNFTPINGRPIRIMYSNR-----------------DPSLRKSGTANIFIKNLDKSIDNK 353 +N +NG+ I + + + D R G N+++KNLD ID++ Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 308 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F FG I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 309 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 368 AQRKEER-----QAHLTNQYMQRMA 387 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER 458 +PS A++++ +L + L++ F G ILS +V D S GY +V +++ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 A A++ +N ++ K V + +RD S N+++KNL ++ L + Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117 Query: 639 IF 644 F Sbjct: 118 TF 119
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 249 bits (636), Expect = 5e-66 Identities = 123/206 (59%), Positives = 156/206 (75%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 RAL+ +NF I G+P+RIM+S RDPSLRKSG NIFIKNLDKSIDNKAL+DTF FGNIL Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SCKV D G SKGYGFV +E EAA AIEK+NGML+ND+KV+VG F ++ER+ G Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LK++F Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLF 211 Score = 119 bits (298), Expect = 8e-27 Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GY +V++ T A RA+E Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + R+ L R N++IKN + +D++ L D F FG Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD +G+SKG+GFV +ER E A A++++NG +N K++YVG +K ER Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL- 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+YVKNL + ++ L++ F Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314 Score = 96.7 bits (239), Expect = 5e-20 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L D+F + G +SV+V D S KS G+ +V++ DA +A++ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 225 MLNFTPINGRPIRIMYSNR-----------------DPSLRKSGTANIFIKNLDKSIDNK 353 +N +NG+ I + + + D R G N+++KNLD ID++ Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 308 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F FG I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 309 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 368 AQRKEER-----QAHLTNQYMQRMA 387 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER 458 +PS A++++ +L + L++ F G ILS +V D S GY +V +++ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 A A++ +N ++ K V + +RD S N+++KNL ++ L + Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117 Query: 639 IF 644 F Sbjct: 118 TF 119
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 247 bits (631), Expect = 2e-65 Identities = 123/206 (59%), Positives = 155/206 (75%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAYVN+ PADA Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 RAL+ +NF I G+P+RIM+S RDPSLRKSG NIFIKNLDKSIDNKAL+DTF FGNIL Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SCKV D G SKGYGFV +E EAA AI+K+NGML+ND+KV+VG F ++ER+ G Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LKE F Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKEWF 211 Score = 109 bits (272), Expect = 8e-24 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 19/218 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D K GY +V++ T A RA++ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + R+ L R N++IKN + +D++ L + F +G Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD G+S+G+GFV +ER E A A++ +NG +N K ++VG +K ER Sbjct: 218 LSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTEL- 276 Query: 570 SVKFN-------------NVYVKNLAETTTEDDLKEIF 644 KF N+YVKNL + ++ L++ F Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314 Score = 93.6 bits (231), Expect = 4e-19 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 17/205 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L + F Q G +SV+V D KS G+ +V++ DA +A++ Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVD 249 Query: 225 MLNFTPINGRPI-----------------RIMYSNRDPSLRKSGTANIFIKNLDKSIDNK 353 +N +NG+ I + +D R G N+++KNLD ID++ Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDE 308 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L F FG+I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 309 RLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 368 AQRKEER-----QAHLTNQYMQRMA 387 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER 458 +PS A++++ +L + L++ F G ILS +V D S GY +V +++ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 A A++ +N ++ K V + +RD S N+++KNL ++ L + Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117 Query: 639 IF 644 F Sbjct: 118 TF 119
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 244 bits (623), Expect = 2e-64 Identities = 120/203 (59%), Positives = 152/203 (74%), Gaps = 2/203 (0%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 + SLYVG+LD SV +A LF++F IG V S+RVCRD +R+SLGYAYVN++ D +AL Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 222 EMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + LN+T I GRP RIM+S RDPSLRK GT N+FIKNLD +IDNKALHDTF FG ILSCK Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVK- 578 VA D G +KGYGFV ++ E+A+AAIE +NGML+NDKKVYVG V ++ER + ++K Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258 Query: 579 -FNNVYVKNLAETTTEDDLKEIF 644 F NVY+KNL TE + ++F Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLF 281 Score = 97.4 bits (241), Expect = 3e-20 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 16/186 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ +LD + + + D+F Q G + S+ + +D K G+ +VNY A +A++ Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVD 319 Query: 225 MLNFTPINGRPIRIMYSN----RDPSLRKSGT------------ANIFIKNLDKSIDNKA 356 LN G+ + + + R+ LRK N+FIKNL +D++ Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F FG I S K+ TD G+SKG+GFV Y E A+ A+ ++N ++ K +YV Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439 Query: 537 VRKQER 554 RK+ R Sbjct: 440 QRKEVR 445 Score = 94.7 bits (234), Expect = 2e-19 Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 18/217 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD ++ + L D F+ G ++S +V D GY +V++++ A A+E Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAK-GYGFVHFDSVESANAAIEH 227 Query: 228 LNFTPINGRPIRIMY--SNRDPSLR----KSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N + + + + S R+ + K+ N++IKNLD I + D F FG I Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 S + D + +G+GFV Y E A A+++LN KK+YVG +K ER+ Sbjct: 288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347 Query: 570 S-------VKFN-----NVYVKNLAETTTEDDLKEIF 644 K N N+++KNL + ++ LK F Sbjct: 348 KRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEF 384 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/100 (26%), Positives = 49/100 (49%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 + + +L++ +L V D +L F+ G + S ++ D KS G+ +V Y TP +A Sbjct: 359 NKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEA 417 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKN 329 +A+ +N + G+P+ + + R R A I +N Sbjct: 418 NKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARN 457
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 243 bits (620), Expect = 4e-64 Identities = 118/207 (57%), Positives = 155/207 (74%), Gaps = 2/207 (0%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 + +P SLYVGDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAY+N+ PADA Sbjct: 6 AGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADA 65 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 RAL+ +NF I GRPIRIM+S RDP LRKSG N+FIKNLD+SIDNKAL+DTF FGNI Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNI 125 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LSCKV D G S+GYGFV +E EAA+ AI+ +NGML+ND+KV+VG F ++ER+ G Sbjct: 126 LSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184 Query: 570 S--VKFNNVYVKNLAETTTEDDLKEIF 644 + ++F NVY+KN E + L+EIF Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIF 211 Score = 114 bits (285), Expect = 2e-25 Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 21/220 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D S GY +V++ T A RA++ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQT 157 Query: 228 LNFTPINGRPIRIMY--SNRDPSLRKSGTA----NIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + + S R+ L N++IKN + +D+K L + F FGN Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV D G S+G+GFV Y E A A+ ++NG +N + +YVG R Q+R G Sbjct: 218 LSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG---RAQKRIERQG 274 Query: 570 SVKFN---------------NVYVKNLAETTTEDDLKEIF 644 +K N+YVKNL + +D L++ F Sbjct: 275 ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314 Score = 100 bits (249), Expect = 4e-21 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 16/204 (7%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L ++F+ G +SV+V D T R S G+ +VNY +A +A+ Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGR-SRGFGFVNYGNHEEAQKAVS 249 Query: 225 MLNFTPINGRPIRIMYSNR----------------DPSLRKSGTANIFIKNLDKSIDNKA 356 +N +NGR I + + + + + N+++KNLD ID+ Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F +G I S KV T+ G SKG+GFV + E A A+ ++NG +++ K +YV Sbjct: 310 LRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Query: 537 VRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ LA Sbjct: 369 QRKEER-----KAILTNQYMQRLA 387
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 241 bits (615), Expect = 1e-63 Identities = 117/207 (56%), Positives = 154/207 (74%), Gaps = 2/207 (0%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 + +P SLY+GDL V +A L++ F+ G ++S+RVCRD+ +R+SLGYAY+N+ PADA Sbjct: 6 AEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADA 65 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 RAL+ +NF I GRPIRIM+S RDP LRKSG N+FIKNLD SIDNKAL+DTF FG+I Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDI 125 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LSCKV D G S+GYGFV +E EAA+ AI+ +NGML+ND+KV+VG F ++ER+ G Sbjct: 126 LSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184 Query: 570 S--VKFNNVYVKNLAETTTEDDLKEIF 644 + ++F NVY+KN E + LKEIF Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLKEIF 211 Score = 113 bits (282), Expect = 5e-25 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 22/221 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRV-CRDVTSRKSLGYAYVNYNTPADAARALE 224 ++++ +LD S+ + L+D F+ G ++S +V C + SR GY +V++ T A RA++ Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR---GYGFVHFETQEAANRAIQ 156 Query: 225 MLNFTPINGRPIRIMY--SNRDPSLRKSGTA----NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + + S R+ L N++IKN + +D+K L + F FGN Sbjct: 157 TMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGN 216 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSP 566 LS KV D +G S+G+GFV Y E A A+ ++NG +N + VYVG R Q+R Sbjct: 217 TLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG---RAQKRIERQ 273 Query: 567 GSVKFN---------------NVYVKNLAETTTEDDLKEIF 644 G +K N+YVKNL + +D L++ F Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314 Score = 98.2 bits (243), Expect = 2e-20 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 16/204 (7%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L ++F+ G +SV+V D S +S G+ +VNY +A +A+ Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVT 249 Query: 225 MLNFTPINGRPIRIMYSNR----------------DPSLRKSGTANIFIKNLDKSIDNKA 356 +N +NGR + + + + + + N+++KNLD ID+ Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F +G I S KV T+ G SKG+GFV + E A A+ ++NG +++ K +YV Sbjct: 310 LRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Query: 537 VRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ LA Sbjct: 369 QRKEER-----KAILTNQYMQRLA 387
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 240 bits (612), Expect = 3e-63 Identities = 116/207 (56%), Positives = 154/207 (74%), Gaps = 2/207 (0%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 + +P SLY+GDL V +A L++ F+ G ++S+RVCRD+ +R+SL YAY+N+ PADA Sbjct: 6 AGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADA 65 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 RAL+ +NF I GRPIRIM+S RDP LRKSG N+FIKNLD+SIDNKAL+DTF FGNI Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNI 125 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LSCKV D G S+GYGFV +E EAA+ AI+ +NGML+ND+KV+VG F ++ER+ G Sbjct: 126 LSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184 Query: 570 S--VKFNNVYVKNLAETTTEDDLKEIF 644 + ++F NVY+KN E + L+EIF Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIF 211 Score = 113 bits (283), Expect = 4e-25 Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 21/220 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + L+D F+ G ++S +V D S GY +V++ T A RA++ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQT 157 Query: 228 LNFTPINGRPIRIMY--SNRDPSLRKSGTA----NIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +N R + + + S R+ L N++IKN + +D+K L + F FGN Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR--------- 542 LS KV D +G S+G+GFV Y E A A+ ++NG +N + +YVG + Sbjct: 218 LSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELK 277 Query: 543 ------KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 KQER N V N+YVKNL + +D L++ F Sbjct: 278 RKFEQIKQERINRYQGV---NLYVKNLDDGIDDDRLRKEF 314 Score = 99.0 bits (245), Expect = 1e-20 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 16/204 (7%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T++Y+ + + D +L ++F+ G +SV+V D + R S G+ +VNY +A +A+ Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGR-SRGFGFVNYGNHEEAQKAVS 249 Query: 225 MLNFTPINGRPIRIMYSNR----------------DPSLRKSGTANIFIKNLDKSIDNKA 356 +N +NGR I + + + + + N+++KNLD ID+ Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F +G I S KV T+ G SKG+GFV + E A A+ ++NG +++ K +YV Sbjct: 310 LRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Query: 537 VRKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ LA Sbjct: 369 QRKEER-----KAILTNQYMQRLA 387
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 231 bits (589), Expect = 1e-60 Identities = 112/203 (55%), Positives = 150/203 (73%), Gaps = 2/203 (0%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 + SLYVGDL+ SV +A L+D+F+ IG V S+RVCRD ++ SLGYAYVN+N +A+ Sbjct: 36 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 95 Query: 222 EMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 E LN+TPI GR RIM+S RDPSLRK G+ NIFIKNL IDNKAL+DTF VFG+ILS K Sbjct: 96 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 155 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVK- 578 +ATD G+SKG+GFV +E + AA AI+ LNGML+N +++YV P + ++ERD+ K Sbjct: 156 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 215 Query: 579 -FNNVYVKNLAETTTEDDLKEIF 644 + N+YVKN+ TT++ +E+F Sbjct: 216 HYTNLYVKNINSETTDEQFQELF 238 Score = 101 bits (251), Expect = 2e-21 Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 18/217 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +L + + L+D F+ G ++S ++ D KS G+ +V++ A A++ Sbjct: 126 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENG-KSKGFGFVHFEEEGAAKEAIDA 184 Query: 228 LNFTPINGRPI----RIMYSNRDPSLR--KSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 LN +NG+ I + RD L K+ N+++KN++ ++ + F FG I Sbjct: 185 LNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 244 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDN--- 560 +S + D G+ KG+GFV YE+ E A A+E LN +N +K+YVG +K ER + Sbjct: 245 VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 304 Query: 561 ---------SPGSVKFNNVYVKNLAETTTEDDLKEIF 644 + N++VKNL ++ ++ L+E F Sbjct: 305 KQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF 341 Score = 97.4 bits (241), Expect = 3e-20 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 16/186 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+LYV +++ D Q ++FA+ G +VS + +D K G+ +VNY DA +A+E Sbjct: 218 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADG-KLKGFGFVNYEKHEDAVKAVE 276 Query: 225 MLNFTPINGRPIRIMYSNRD----------------PSLRKSGTANIFIKNLDKSIDNKA 356 LN + +NG + + + + + K N+F+KNLD S+D++ Sbjct: 277 ALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK 336 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L + F +G I S KV G+SKG+GFV + E A AI + N ++ K +YV Sbjct: 337 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 396 Query: 537 VRKQER 554 RK R Sbjct: 397 QRKDVR 402 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/100 (29%), Positives = 52/100 (52%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 + + +L+V +LD SV D +L + FA G + S +V R + KS G+ +V ++TP +A Sbjct: 316 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEA 374 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKN 329 +A+ N + G+P+ + + R R I +N Sbjct: 375 TKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 414
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 221 bits (564), Expect = 1e-57 Identities = 110/206 (53%), Positives = 146/206 (70%), Gaps = 2/206 (0%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S+P SLYVGDL V +A L++ F+ G ++S+R+CRD+ + S YAYVN+ DA Sbjct: 7 SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 AL+ +NF I G+P+RIM+S RDPSLRKSG NIF+KNLDKSI+NKAL+DT FGNIL Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNIL 126 Query: 393 SCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG- 569 SC V D G SKGYGFV +E EAA AI+K+NGML+N +KV+VG F ++ER+ G Sbjct: 127 SCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGA 185 Query: 570 -SVKFNNVYVKNLAETTTEDDLKEIF 644 + +F NVY+KN E ++ LK++F Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLF 211 Score = 117 bits (292), Expect = 4e-26 Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 18/217 (8%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +++V +LD S+ + L+D + G ++S V D K GY +V++ T A RA++ Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKK 157 Query: 228 LNFTPINGRPIRI----MYSNRDPSL--RKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 389 +N +NGR + + R+ L R N++IKN + +D++ L D F FG Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 LS KV TD +G+SKG+GFV +ER E A A++++NG +N K++YVG +K ER Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277 Query: 570 SV------------KFNNVYVKNLAETTTEDDLKEIF 644 + N+YVKNL + ++ L++ F Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAF 314 Score = 95.9 bits (237), Expect = 9e-20 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 16/203 (7%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++Y+ + + D +L D+F + G +SV+V D S KS G+ +V++ DA +A++ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250 Query: 228 LNFTPINGRPI----------------RIMYSNRDPSLRKSGTANIFIKNLDKSIDNKAL 359 +N +NG+ I R + + + N+++KNLD ID++ L Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310 Query: 360 HDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFV 539 F FG I S KV + G SKG+GFV + E A A+ ++NG ++ K +YV Sbjct: 311 RKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Query: 540 RKQERDNSPGSVKFNNVYVKNLA 608 RK+ER N Y++ +A Sbjct: 370 RKEER-----QAYLTNEYMQRMA 387 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYER 458 +PS TA++++ +L + L++ F G ILS ++ D S Y +V ++ Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNL 605 + A A++ +N ++ K V + +RD S N++VKNL Sbjct: 62 TKDAEHALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFVKNL 106
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 192 bits (487), Expect = 9e-49 Identities = 99/206 (48%), Positives = 141/206 (68%), Gaps = 1/206 (0%) Frame = +3 Query: 30 SSFPAT-SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPAD 206 SS P T SLYVGDL SV + L+D FA+ + SVR+C+D +S +SL Y Y N+ + D Sbjct: 18 SSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQD 77 Query: 207 AARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGN 386 A A+E N + +NG+ IR+M+S R P R++G N+F+KNL +S+ N L D F FGN Sbjct: 78 ANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGN 137 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSP 566 I+SCKVAT G+S+GYGFVQ+E+++AAHAAI+ LN ++ DK++YVG F++K +R Sbjct: 138 IVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP- 196 Query: 567 GSVKFNNVYVKNLAETTTEDDLKEIF 644 K+ N+Y+KNL +ED L+E F Sbjct: 197 -EEKYTNLYMKNLDADVSEDLLREKF 221 Score = 98.6 bits (244), Expect = 1e-20 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +++V +L SV +A L D+F + G +VS +V + KS GY +V + A A++ Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQT 171 Query: 228 LNFTPINGRPIRI--MYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 LN T + + I + D + N+++KNLD + L + F FG I+S Sbjct: 172 LNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER--------- 554 +A D +GY FV ++ E A A E +NG K +YVG +K ER Sbjct: 232 IAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFK 291 Query: 555 ---DNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 + K +N+YVKN+ TE++L++ F Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHF 324 Score = 95.5 bits (236), Expect = 1e-19 Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 16/186 (8%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+LY+ +LD V + L + FA+ G +VS+ + +D +R GYA+VN++ P DA RA E Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAE 259 Query: 225 MLNFTPINGRPIRI----MYSNRDPSLRK------------SGTANIFIKNLDKSIDNKA 356 +N T + + + + R+ LR+ + +NI++KN++ ++ + Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F G I S K+ D G+SKG+GFV + E A A++ +G + + K +YV Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379 Query: 537 VRKQER 554 +K++R Sbjct: 380 QKKEDR 385
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 186 bits (471), Expect = 7e-47 Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVGDLD V + L+ F G + R+CRD +R LGY YVN+ PADA AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF ING+P R+M+S D LRKSG NIFIKNLDKSIDN+AL F FGNILSCKV Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVK 578 D G SKGY +V ++ AA+ AI +NG+ +N+++VYVG F +ER + Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Query: 579 FNNVYVKNLAETTTEDDLKEIF 644 F NV+VKN+ + ++ LKE+F Sbjct: 198 FTNVFVKNIGDDIDDEKLKELF 219 Score = 114 bits (284), Expect = 3e-25 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 23/222 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF +F+ G ++S +V D K GYAYV++++ A A RA+ Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164 Query: 228 LNFTPINGRPIRI----MYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + R +R A N+F+KN+ ID++ L + FC +G Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK------- 545 S KV D +G+SKG+GFV+YE EAA A+ L+G ++ K +YVG +K Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 546 ---------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 +E+ PG +Y+KNL ET ++ LKE F Sbjct: 285 RRRFERLRLKEKSRPPGV----PIYIKNLDETINDEKLKEEF 322 Score = 76.3 bits (186), Expect = 7e-14 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 22/183 (12%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+++V ++ + D +L ++F + G SV+V RD S KS G+ +V Y T A +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257 Query: 225 MLNFTPINGRPI----------------------RIMYSNRDPSLRKSGTANIFIKNLDK 338 L+ I+G+ + R+ +R P + I+IKNLD+ Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDE 311 Query: 339 SIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +I+++ L + F FG+I KV + G+ KG+G V + E A A++++NG ++ K Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 519 VYV 527 ++V Sbjct: 371 LHV 373
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 186 bits (471), Expect = 7e-47 Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVGDLD V + L+ F G + R+CRD +R LGY YVN+ PADA AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF ING+P R+M+S D LRKSG NIFIKNLDKSIDN+AL F FGNILSCKV Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVK 578 D G SKGY +V ++ AA+ AI +NG+ +N+++VYVG F +ER + Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Query: 579 FNNVYVKNLAETTTEDDLKEIF 644 F NV+VKN+ + ++ LKE+F Sbjct: 198 FTNVFVKNIGDDIDDEKLKELF 219 Score = 114 bits (284), Expect = 3e-25 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 23/222 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF +F+ G ++S +V D K GYAYV++++ A A RA+ Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164 Query: 228 LNFTPINGRPIRI----MYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + R +R A N+F+KN+ ID++ L + FC +G Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK------- 545 S KV D +G+SKG+GFV+YE EAA A+ L+G ++ K +YVG +K Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 546 ---------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 +E+ PG +Y+KNL ET ++ LKE F Sbjct: 285 RRRFERLRLKEKSRPPGV----PIYIKNLDETINDEKLKEEF 322 Score = 76.3 bits (186), Expect = 7e-14 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 22/183 (12%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+++V ++ + D +L ++F + G SV+V RD S KS G+ +V Y T A +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257 Query: 225 MLNFTPINGRPI----------------------RIMYSNRDPSLRKSGTANIFIKNLDK 338 L+ I+G+ + R+ +R P + I+IKNLD+ Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDE 311 Query: 339 SIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +I+++ L + F FG+I KV + G+ KG+G V + E A A++++NG ++ K Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 519 VYV 527 ++V Sbjct: 371 LHV 373
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 186 bits (471), Expect = 7e-47 Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVGDLD V + L+ F G + R+CRD +R LGY YVN+ PADA AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF ING+P R+M+S D LRKSG NIFIKNLDKSIDN+AL F FGNILSCKV Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVK 578 D G SKGY +V ++ AA+ AI +NG+ +N+++VYVG F +ER + Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Query: 579 FNNVYVKNLAETTTEDDLKEIF 644 F NV+VKN+ + ++ LKE+F Sbjct: 198 FTNVFVKNIGDDIDDEKLKELF 219 Score = 114 bits (284), Expect = 3e-25 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 23/222 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF +F+ G ++S +V D K GYAYV++++ A A RA+ Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164 Query: 228 LNFTPINGRPIRI----MYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + R +R A N+F+KN+ ID++ L + FC +G Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK------- 545 S KV D +G+SKG+GFV+YE EAA A+ L+G ++ K +YVG +K Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 546 ---------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 +E+ PG +Y+KNL ET ++ LKE F Sbjct: 285 RRRFERLRLKEKSRPPGV----PIYIKNLDETINDEKLKEEF 322 Score = 75.9 bits (185), Expect = 1e-13 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 22/183 (12%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+++V ++ + D +L ++F + G SV+V RD S KS G+ +V Y T A +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257 Query: 225 MLNFTPINGRPI----------------------RIMYSNRDPSLRKSGTANIFIKNLDK 338 L+ I+G+ + R+ +R P + I+IKNLD+ Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDE 311 Query: 339 SIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +I+++ L + F FG+I KV + G+ KG+G V + E A A++++NG ++ K Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKP 370 Query: 519 VYV 527 ++V Sbjct: 371 LHV 373
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 186 bits (471), Expect = 7e-47 Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVGDLD V + L+ F G + R+CRD +R LGY YVN+ PADA AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF ING+P R+M+S D LRKSG NIFIKNLDKSIDN+AL F FGNILSCKV Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVK 578 D G SKGY +V ++ AA+ AI +NG+ +N+++VYVG F +ER + Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Query: 579 FNNVYVKNLAETTTEDDLKEIF 644 F NV+VKN+ + ++ LKE+F Sbjct: 198 FTNVFVKNIGDDIDDEKLKELF 219 Score = 114 bits (284), Expect = 3e-25 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 23/222 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF +F+ G ++S +V D K GYAYV++++ A A RA+ Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164 Query: 228 LNFTPINGRPIRI----MYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + R +R A N+F+KN+ ID++ L + FC +G Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK------- 545 S KV D +G+SKG+GFV+YE EAA A+ L+G ++ K +YVG +K Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 546 ---------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 +E+ PG +Y+KNL ET ++ LKE F Sbjct: 285 RRRFERLRLKEKSRPPGV----PIYIKNLDETINDEKLKEEF 322 Score = 76.3 bits (186), Expect = 7e-14 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 22/183 (12%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+++V ++ + D +L ++F + G SV+V RD S KS G+ +V Y T A +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257 Query: 225 MLNFTPINGRPI----------------------RIMYSNRDPSLRKSGTANIFIKNLDK 338 L+ I+G+ + R+ +R P + I+IKNLD+ Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDE 311 Query: 339 SIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +I+++ L + F FG+I KV + G+ KG+G V + E A A++++NG ++ K Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 519 VYV 527 ++V Sbjct: 371 LHV 373
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 186 bits (471), Expect = 7e-47 Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVGDLD V + L+ F G + R+CRD +R LGY YVN+ PADA AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF ING+P R+M+S D LRKSG NIFIKNLDKSIDN+AL F FGNILSCKV Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVK 578 D G SKGY +V ++ AA+ AI +NG+ +N+++VYVG F +ER + Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Query: 579 FNNVYVKNLAETTTEDDLKEIF 644 F NV+VKN+ + ++ LKE+F Sbjct: 198 FTNVFVKNIGDDIDDEKLKELF 219 Score = 114 bits (284), Expect = 3e-25 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 23/222 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF +F+ G ++S +V D K GYAYV++++ A A RA+ Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164 Query: 228 LNFTPINGRPIRI----MYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + R +R A N+F+KN+ ID++ L + FC +G Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK------- 545 S KV D +G+SKG+GFV+YE EAA A+ L+G ++ K +YVG +K Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 546 ---------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 +E+ PG +Y+KNL ET ++ LKE F Sbjct: 285 RRRFERLRLKEKSRPPGV----PIYIKNLDETINDEKLKEEF 322 Score = 76.3 bits (186), Expect = 7e-14 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 22/183 (12%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+++V ++ + D +L ++F + G SV+V RD S KS G+ +V Y T A +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257 Query: 225 MLNFTPINGRPI----------------------RIMYSNRDPSLRKSGTANIFIKNLDK 338 L+ I+G+ + R+ +R P + I+IKNLD+ Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDE 311 Query: 339 SIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +I+++ L + F FG+I KV + G+ KG+G V + E A A++++NG ++ K Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 519 VYV 527 ++V Sbjct: 371 LHV 373
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 186 bits (471), Expect = 7e-47 Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVGDLD V + L+ F G + R+CRD +R LGY YVN+ PADA AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 +NF ING+P R+M+S D LRKSG NIFIKNLDKSIDN+AL F FGNILSCKV Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVK 578 D G SKGY +V ++ AA+ AI +NG+ +N+++VYVG F +ER + Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Query: 579 FNNVYVKNLAETTTEDDLKEIF 644 F NV+VKN+ + ++ LKE+F Sbjct: 198 FTNVFVKNIGDDIDDEKLKELF 219 Score = 114 bits (284), Expect = 3e-25 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 23/222 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++++ +LD S+ + LF +F+ G ++S +V D K GYAYV++++ A A RA+ Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164 Query: 228 LNFTPINGRPIRI----MYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGN 386 +N +N R + + R +R A N+F+KN+ ID++ L + FC +G Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK------- 545 S KV D +G+SKG+GFV+YE EAA A+ L+G ++ K +YVG +K Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 546 ---------QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 +E+ PG +Y+KNL ET ++ LKE F Sbjct: 285 RRRFERLRLKEKSRPPGV----PIYIKNLDETINDEKLKEEF 322 Score = 76.3 bits (186), Expect = 7e-14 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 22/183 (12%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+++V ++ + D +L ++F + G SV+V RD S KS G+ +V Y T A +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257 Query: 225 MLNFTPINGRPI----------------------RIMYSNRDPSLRKSGTANIFIKNLDK 338 L+ I+G+ + R+ +R P + I+IKNLD+ Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDE 311 Query: 339 SIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +I+++ L + F FG+I KV + G+ KG+G V + E A A++++NG ++ K Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 519 VYV 527 ++V Sbjct: 371 LHV 373
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 111 bits (278), Expect = 2e-24 Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++Y+G+LD V D+ LF++ Q G VV++ + RD G+ + + D A ++ Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSC-KV 404 LN + G+PIR+ +++D + AN+F+ NLD +D + L+DTF G ++ +V Sbjct: 72 LNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQV 131 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV 575 A D G SKGYGFV Y+ E A AAIE +N + +K + V +++ + G + Sbjct: 132 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDI 188
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 111 bits (277), Expect = 2e-24 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 38/236 (16%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++GDL +V + L +F + VS +VC D ++KSLG+ Y+N+ +A +A+E L Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNL---DKSIDNKALHDTFCVFGNILSCK 401 N+T +NG+ IRIM S R+ + RK+ N+F NL + + + +DTF +G ILSCK Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD-------- 557 + K GFV +E ++ A I+ N KK+ G K+ R Sbjct: 213 L-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267 Query: 558 ------------------NSPGSVK---------FNNVYVKNLAETTTEDDLKEIF 644 +S G+ K N++++KNL TT DD+ F Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 110 bits (274), Expect = 5e-24 Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 2/177 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++YVG LD V + L+++F Q G VV+ + +D + + GY +V + + DA A+++ Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSC-KV 404 +N + G+PIR+ ++ G ANIFI NLD ID K L+DTF FG IL K+ Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGS 572 DP G SKGY F+ + +A+ AAIE +NG + ++ + V +K + GS Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 101 bits (251), Expect = 2e-21 Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 2/177 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++YVG LD V ++ L+++ Q G VVSV + +D + G+ +V + DA A+++ Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSC-KV 404 LN + G+PI++ ++ G ANIF+ NLD +D K L+DTF FG IL K+ Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKI 132 Query: 405 ATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGS 572 D +G SKG+ F+ + EA+ A+E +NG + ++ + V ++ + G+ Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGT 189
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 94.0 bits (232), Expect = 3e-19 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 28/227 (12%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 SL++G+L +V + L +F + S +VCRD ++KSLGY Y+N+ DA A + Sbjct: 112 SLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKE 171 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNL---DKSIDNKALHDTFCVFGNILSC 398 N+T G+ ++IM S ++ RK+ N+F NL + + ++ + +GN+LSC Sbjct: 172 FNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSC 231 Query: 399 KVATDPAGESKGYGFVQYERDEAAHAAIEKLNGM----------LMNDKKVYVGPFVRKQ 548 + K GFV ++ D +A I+K N L DK+V P K+ Sbjct: 232 LLE-----RRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVRTRPEFTKR 286 Query: 549 ER---------------DNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 ++ +N + + + VKNL TT++++ + F Sbjct: 287 KKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLDYF 333
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 89.7 bits (221), Expect = 6e-18 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ + +F IG + S ++ RD + +SLGY +VNY+ P DA +A+ Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K + F +G I++ ++ Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156 Query: 405 ATDPA-GESKGYGFVQYERDEAAHAAIEKLNG 497 D A G S+G GF+++++ A AI+ LNG Sbjct: 157 LLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 56.6 bits (135), Expect = 6e-08 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEK 488 N+ + L +++ F G+I SCK+ D G+S GYGFV Y A AI Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 LNG+ + K + V + R S S++ N+YV L +T ++ +++++F Sbjct: 100 LNGLKLQTKTIKVS-YARP-----SSASIRDANLYVSGLPKTMSQKEMEQLF 145 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 492 NGMLMNDKKVYVGPFVRKQER 554 NG + ++ + V KQ + Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366 Score = 37.7 bits (86), Expect = 0.029 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ ++ +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSNRDPSLRKSGTA 311 A++ LN G PI + ++N +PS +K+G A Sbjct: 180 EEAIKGLNGQKPLGAAEPITVKFAN-NPS-QKTGQA 213
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 89.4 bits (220), Expect = 8e-18 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 1/201 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ +L +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKF 581 D G S+G GF+++++ A AI+ LNG +K P +VKF Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG--------------QKPPGATEPITVKF 202 Query: 582 NNVYVKNLAETTTEDDLKEIF 644 N N ++ T + L +++ Sbjct: 203 AN----NPSQKTNQAILSQLY 219 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 338 NGYRLGDRVLQV 349 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSN 278 A++ LN G PI + ++N Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFAN 204
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 89.4 bits (220), Expect = 8e-18 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 1/201 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ +L +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKF 581 D G S+G GF+++++ A AI+ LNG +K P +VKF Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG--------------QKPPGATEPITVKF 202 Query: 582 NNVYVKNLAETTTEDDLKEIF 644 N N ++ T + L +++ Sbjct: 203 AN----NPSQKTNQAILSQLY 219 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 338 NGYRLGDRVLQV 349 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSN 278 A++ LN G PI + ++N Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFAN 204
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 89.4 bits (220), Expect = 8e-18 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 1/201 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ +L +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKF 581 D G S+G GF+++++ A AI+ LNG +K P +VKF Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG--------------QKPPGATEPITVKF 202 Query: 582 NNVYVKNLAETTTEDDLKEIF 644 N N ++ T + L +++ Sbjct: 203 AN----NPSQKTNQAILSQLY 219 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 339 NGYRLGDRVLQV 350 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSN 278 A++ LN G PI + ++N Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFAN 204
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 88.6 bits (218), Expect = 1e-17 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ + +F IG + S ++ RD + +SLGY +VNY+ P DA +A+ Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K + F +G I++ ++ Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 497 D G S+G GF+++++ A AI+ LNG Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 56.6 bits (135), Expect = 6e-08 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEK 488 N+ + L +++ F G+I SCK+ D G+S GYGFV Y A AI Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 LNG+ + K + V + R S S++ N+YV L +T ++ +++++F Sbjct: 100 LNGLKLQTKTIKVS-YARP-----SSASIRDANLYVSGLPKTMSQKEMEQLF 145 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 492 NGMLMNDKKVYVGPFVRKQER 554 NG + ++ + V KQ + Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366 Score = 37.4 bits (85), Expect = 0.038 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ ++ +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSNRDPSLRKSGTA 311 A++ LN G PI + ++N +PS +K+G A Sbjct: 180 EEAIKGLNGQKPLGAAEPITVKFAN-NPS-QKTGQA 213
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 88.6 bits (218), Expect = 1e-17 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ +L +F+ IG V S ++ RD + SLGY +VNY T DA RA+ Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN++I L +++ K + D F FG I++ +V Sbjct: 80 TLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137 Query: 405 ATD-PAGESKGYGFVQYERDEAAHAAIEKLNG 497 D G S+G F+++++ A AI NG Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169 Score = 57.4 bits (137), Expect = 4e-08 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Frame = +3 Query: 303 GTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAA 479 G N+ + L +++ L F G + S K+ D AG S GYGFV Y + A A Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 I LNG+ + K + V + R S +K N+Y+ L T T+ D++++F Sbjct: 78 INTLNGLRLQSKTIKVS-YARP-----SSEVIKDANLYISGLPRTMTQKDVEDMF 126 Score = 53.1 bits (126), Expect = 7e-07 Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 51/211 (24%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LY+ L ++ + D+F++ G +++ RV D T+ S G A++ ++ ++A A+ Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166 Query: 228 LNF--TPINGRPIRIMYSNR---------------DPSLRKSGTAN-------------- 314 N P + PI + ++ P+ R G + Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVD 226 Query: 315 -------------------IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKG 434 IFI NL + D L F FG + + KV D + KG Sbjct: 227 HMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG 286 Query: 435 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 +GFV E A AI LNG + DK + V Sbjct: 287 FGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ + +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 106 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 497 D G S+G GF+++++ A AI+ LNG Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195 Score = 59.3 bits (142), Expect = 9e-09 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEK 488 N+ + L +++ + F G I SCK+ D G+S GYGFV Y + A AI Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 LNG+ + K + V + R S S++ N+YV L +T T+ +L+++F Sbjct: 107 LNGLRLQTKTIKVS-YARP-----SSASIRDANLYVSGLPKTMTQKELEQLF 152 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 359 NGYRLGDRVLQV 370 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 127 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 186 Query: 210 ARALEMLNFTPING--RPIRIMYSNRDPSLRKS 302 A++ LN +G PI + ++N +PS + S Sbjct: 187 EEAIKGLNGQKPSGATEPITVKFAN-NPSQKSS 218
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ + +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 111 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 497 D G S+G GF+++++ A AI+ LNG Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200 Score = 60.5 bits (145), Expect = 4e-09 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%) Frame = +3 Query: 273 SNRD-PSLRKSGTA------NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGES 428 +NR+ PS ++G A N+ + L +++ + F G I SCK+ D G+S Sbjct: 32 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91 Query: 429 KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLA 608 GYGFV Y + A AI LNG+ + K + V + R S S++ N+YV L Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARP-----SSASIRDANLYVSGLP 145 Query: 609 ETTTEDDLKEIF 644 +T T+ +L+++F Sbjct: 146 KTMTQKELEQLF 157 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 364 NGYRLGDRVLQV 375 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 132 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 191 Query: 210 ARALEMLNFTPING--RPIRIMYSNRDPSLRKS 302 A++ LN +G PI + ++N +PS + S Sbjct: 192 EEAIKGLNGQKPSGATEPITVKFAN-NPSQKSS 223
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ + +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 497 D G S+G GF+++++ A AI+ LNG Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 60.5 bits (145), Expect = 4e-09 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%) Frame = +3 Query: 273 SNRD-PSLRKSGTA------NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGES 428 +NR+ PS ++G A N+ + L +++ + F G I SCK+ D G+S Sbjct: 20 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 79 Query: 429 KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLA 608 GYGFV Y + A AI LNG+ + K + V + R S S++ N+YV L Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARP-----SSASIRDANLYVSGLP 133 Query: 609 ETTTEDDLKEIF 644 +T T+ +L+++F Sbjct: 134 KTMTQKELEQLF 145 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 352 NGYRLGDRVLQV 363 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSNRDPSLRKS 302 A++ LN +G PI + ++N +PS + S Sbjct: 180 EEAIKGLNGQKPSGATEPITVKFAN-NPSQKSS 211
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 86.7 bits (213), Expect = 5e-17 Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 1/201 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L L ++ +L +F IG + S ++ RD + +SLGY +VNY P DA +A+ Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN+++ L K++ K L F +G I++ ++ Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKF 581 D G S+G GF+++++ A AI+ LNG +K P +VKF Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG--------------QKPPGATEPITVKF 202 Query: 582 NNVYVKNLAETTTEDDLKEIF 644 N N ++ T + L +++ Sbjct: 203 AN----NPSQKTNQAILSQLY 219 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL D L F FG + + KV D + KG+GFV + A AI L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 492 NGMLMNDKKVYV 527 NG + D+ + V Sbjct: 338 NGYRLGDRVLQV 349 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 +S +LYV L ++ +L +F+Q G +++ R+ D + S G ++ ++ +A Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179 Query: 210 ARALEMLNFTPING--RPIRIMYSN 278 A++ LN G PI + ++N Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFAN 204
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 85.5 bits (210), Expect = 1e-16 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 1/152 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L ++ +L +F+ IG V S ++ RD + SLGY +VNY T DA RA+ Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ Y+ PS AN++I L +++ K + D F FG I++ +V Sbjct: 80 TLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137 Query: 405 ATD-PAGESKGYGFVQYERDEAAHAAIEKLNG 497 D G S+G F+++++ A AI G Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169 Score = 58.2 bits (139), Expect = 2e-08 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Frame = +3 Query: 303 GTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAA 479 G N+ + L +++ + L F G + S K+ D AG S GYGFV Y + A A Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 I LNG+ + K + V + R S +K N+Y+ L T T+ D++++F Sbjct: 78 ISTLNGLRLQSKTIKVS-YARP-----SSEVIKDANLYISGLPRTMTQKDVEDMF 126 Score = 50.1 bits (118), Expect = 6e-06 Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 51/211 (24%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LY+ L ++ + D+F++ G +++ RV D T+ S G A++ ++ ++A A+ Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166 Query: 228 L--NFTPINGRPIRIMYSNR---------------DPSLRKSGTAN-------------- 314 + P + PI + ++ P+ R G + Sbjct: 167 FIGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVD 226 Query: 315 -------------------IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKG 434 IFI NL + D L F FG + + KV D + KG Sbjct: 227 HMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG 286 Query: 435 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 +GFV E + AI LNG + DK + V Sbjct: 287 FGFVTMTNYEESAMAIASLNGYRLGDKILQV 317
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 84.3 bits (207), Expect = 3e-16 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 12/173 (6%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 PAT ++VG L S+ D L F IGGV+ RV + + +S GY YV++ + A +A Sbjct: 167 PAT-IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 225 Query: 219 LEMLNFTPINGRPIRIMYSNRDPS-----LRKSG------TANIFIKNLDKSIDNKALHD 365 ++ + I+GRPI S P+ +K G + +F+ NL + D A+ + Sbjct: 226 IQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFE 285 Query: 366 TFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 F G ++S ++ T P E KG+G+VQ+ E A A++ L G ++++ V Sbjct: 286 LFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338 Score = 56.6 bits (135), Expect = 6e-08 Identities = 28/86 (32%), Positives = 52/86 (60%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S P+ +L++G+L + +F++FA+ G VVSVR+ + + G+ YV ++ DA Sbjct: 263 SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 322 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPS 290 +AL+ L I+ RP+R+ +S+ P+ Sbjct: 323 KALDALQGEYIDNRPVRLDFSSPRPN 348
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 83.2 bits (204), Expect = 6e-16 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 1/154 (0%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+L V L +QD +L+ +F IG + + R+ RD + S GY +V++ + ADA RA+ Sbjct: 78 TNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAIN 137 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 LN + + I++ ++ P + N+++ NL +SI ++ L F +G I+ + Sbjct: 138 NLNGITVRNKRIKVSFAR--PGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNI 195 Query: 405 ATDP-AGESKGYGFVQYERDEAAHAAIEKLNGML 503 D G +G F+++ + E A AI LN ++ Sbjct: 196 LRDKHTGTPRGVAFIRFNKREEAQEAISALNNVI 229 Score = 59.3 bits (142), Expect = 9e-09 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHA 476 SGT N+ + L + + ++ L+ F G I +C++ D G S GYGFV + + A Sbjct: 76 SGT-NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALR 134 Query: 477 AIEKLNGMLMNDKKVYVGPFVRKQERDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 AI LNG+ + +K++ V F R PG ++ N+YV NL+ + T++ L+ IF Sbjct: 135 AINNLNGITVRNKRIKVS-FAR-------PGGEQLRDTNLYVTNLSRSITDEQLETIF 184
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 81.3 bits (199), Expect = 2e-15 Identities = 47/172 (27%), Positives = 91/172 (52%), Gaps = 1/172 (0%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYVG+LD ++ + L F G + ++++ D + K++ YA+V Y+ DA AL+ L Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 134 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 N I ++I ++ + T N+F+ +L+ ++D++ L + F F + LS V Sbjct: 135 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 194 Query: 411 D-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNS 563 D G S+GYGFV + + A A++ + G +N + + + ++ +N+ Sbjct: 195 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN 246 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/82 (34%), Positives = 47/82 (57%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 SS +L+VGDL+V+V D L + F +S V D+ + S GY +V++ + DA Sbjct: 156 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 215 Query: 210 ARALEMLNFTPINGRPIRIMYS 275 A++ + +NGRP+RI ++ Sbjct: 216 QNAMDSMQGQDLNGRPLRINWA 237 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/117 (24%), Positives = 56/117 (47%) Frame = +3 Query: 294 RKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAH 473 R++ +++ NLDK+I L F V G I + K+ D ++ Y FV+Y + A+ Sbjct: 69 RETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDAN 128 Query: 474 AAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 A++ LNG + + V + + Q+ + N++V +L ++ L+ F Sbjct: 129 IALQTLNGKQIENNIVKINWAFQSQQSSSDDTF----NLFVGDLNVNVDDETLRNAF 181
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 80.5 bits (197), Expect = 4e-15 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 9/190 (4%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVG+L V + + +F+QIG S ++ + TS Y +V + DAA AL Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTAN---IFIKNLDKSIDNKALHDTFCVFGNILSC 398 +N I G+ +++ ++ PS +K T+N +F+ +L I + + F FG I Sbjct: 68 MNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126 Query: 399 KVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG-----PFVRKQERDN 560 +V D A G+SKGYGFV + A AI + G + +++ P K ++N Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186 Query: 561 SPGSVKFNNV 590 + ++F +V Sbjct: 187 NTKQLRFEDV 196 Score = 68.9 bits (167), Expect = 1e-11 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VGDL + + FA G + RV +D+ + KS GY +V++ DA A+ + Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTAN--------------------IFIKNLDKSIDN 350 + GR IR ++ R P KS N ++ + + + Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 + + TF FG I+ +V + KGY FV++ E+A AI +NG Sbjct: 219 QLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 262
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 79.3 bits (194), Expect = 9e-15 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 14/179 (7%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P ++VG+L S A L ++F + G V V V D + +S G+ +V ++ + A Sbjct: 85 PDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144 Query: 219 LEMLNFTPINGRPIRIMYS----NRDPSLRKSGTAN---------IFIKNLDKSIDNKAL 359 + N ++GR +R+ R+ S + G+ +++ NL +D AL Sbjct: 145 CQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDAL 204 Query: 360 HDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 F G ++ KV D +G S+G+GFV Y E + AIE L+G+ +N + + V P Sbjct: 205 ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSP 263 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 10/120 (8%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL S D+ AL + F GN+ +V D G S+G+GFV E AA ++ Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 492 NGMLMNDK--KVYVGPFVRKQE----RDNSPGSVKF---NNVYVKNLAETTTEDDLKEIF 644 NG ++ + +V GP K+E R S G F N VYV NLA +D L+ +F Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLF 208 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/83 (32%), Positives = 45/83 (54%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +YVG+L V L +F++ G VV +V D S +S G+ +V Y++ + A+E L Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249 Query: 231 NFTPINGRPIRIMYSNRDPSLRK 299 + +NGR IR+ + P R+ Sbjct: 250 DGVDLNGRAIRVSPAEARPPRRQ 272
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 78.2 bits (191), Expect = 2e-14 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A LYVG++ ++ + +L + + G + V D S +S + +V T DA + Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVI 142 Query: 222 EMLNFTPINGRPIRIMYSNR------------DPSLRKSGTANIFIKNLDKSIDNKALHD 365 E LN T I GR I++ + + + S ++I NL K++ N+ L D Sbjct: 143 EKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKD 202 Query: 366 TFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 F G +L KV P +S G+GFV + +E AAI+ LN ++ +K+ V Sbjct: 203 FFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257 Score = 49.3 bits (116), Expect = 1e-05 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Frame = +3 Query: 303 GTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAA 479 G +++ N+ ++++N L G I +V D +G S+ +GFV + E A+A Sbjct: 82 GARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAV 141 Query: 480 IEKLNGMLMNDKKVYV--------GPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLK 635 IEKLN + +K+ V G + + ++S VY+ NLA+T T + LK Sbjct: 142 IEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLK 201 Query: 636 EIF 644 + F Sbjct: 202 DFF 204
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/151 (29%), Positives = 75/151 (49%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+LY+ L D L + G +VS + D T+ K GY +V++++PA A +A+ Sbjct: 62 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 121 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L + + + + +DP+ N++I NL S+D + L + FG ++S ++ Sbjct: 122 ALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 172 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 D +G S+G GF + E E A I NG Sbjct: 173 LRDSSGTSRGVGFARMESTEKCEAVIGHFNG 203
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 76.6 bits (187), Expect = 6e-14 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 15/191 (7%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTS-------------RKSLGYAYV 185 T+L V L ++ + ++ +F+ +G + SV++ RD + +SLGY +V Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFV 208 Query: 186 NYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHD 365 NY P DA +A+ +LN + + I++ ++ PS AN+++ L K++ + L Sbjct: 209 NYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEA 266 Query: 366 TFCVFGNILSCKVATDPAG--ESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFV 539 F FG I++ ++ + ++KG GF+++++ E A AI LNG + P V Sbjct: 267 IFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSS---CTDPIV 323 Query: 540 RKQERDNSPGS 572 K N+PGS Sbjct: 324 VK--FSNTPGS 332 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA--------------GESKGYGFVQ 449 N+ + L +++ + F G I S K+ D + G+S GYGFV Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209 Query: 450 YERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDD 629 Y R + A A+ LNG+ + +K + V F R S ++K N+YV L +T T+ + Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP-----SSDAIKGANLYVSGLPKTMTQQE 263 Query: 630 LKEIF 644 L+ IF Sbjct: 264 LEAIF 268 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 303 GTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAA 479 G IFI NL + AL F FG + S K+ DP + KGYGFV + A A Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459 Query: 480 IEKLNGMLMNDKKVYV 527 I LNG M ++ + V Sbjct: 460 IRALNGYTMGNRVLQV 475
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 76.6 bits (187), Expect = 6e-14 Identities = 43/151 (28%), Positives = 74/151 (49%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+LY+ L D L + G +VS + D T+ K GY +V++++P+ A +A+ Sbjct: 58 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVT 117 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L + + + + +DP+ N++I NL S+D + L FG ++S ++ Sbjct: 118 ALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRI 168 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 D +G S+G GF + E E A I NG Sbjct: 169 LRDTSGASRGVGFARMESTEKCEAIITHFNG 199
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 76.6 bits (187), Expect = 6e-14 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 15/191 (7%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTS-------------RKSLGYAYV 185 T+L V L ++ + ++ +F+ +G + SV++ RD + +SLGY +V Sbjct: 185 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFV 244 Query: 186 NYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHD 365 NY P DA +A+ +LN + + I++ ++ PS AN+++ L K++ + L Sbjct: 245 NYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEA 302 Query: 366 TFCVFGNILSCKVATDPAG--ESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFV 539 F FG I++ ++ + ++KG GF+++++ E A AI LNG + P V Sbjct: 303 IFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSS---CTDPIV 359 Query: 540 RKQERDNSPGS 572 K N+PGS Sbjct: 360 VK--FSNTPGS 368 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA--------------GESKGYGFVQ 449 N+ + L +++ + F G I S K+ D + G+S GYGFV Sbjct: 186 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 245 Query: 450 YERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDD 629 Y R + A A+ LNG+ + +K + V F R S ++K N+YV L +T T+ + Sbjct: 246 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP-----SSDAIKGANLYVSGLPKTMTQQE 299 Query: 630 LKEIF 644 L+ IF Sbjct: 300 LEAIF 304 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 303 GTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAA 479 G IFI NL + AL F FG + S K+ DP + KGYGFV + A A Sbjct: 436 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 495 Query: 480 IEKLNGMLMNDKKVYV 527 I LNG M ++ + V Sbjct: 496 IRALNGYTMGNRVLQV 511
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 76.3 bits (186), Expect = 7e-14 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P ++VG+L S A L ++F + G V V V D + +S G+ +V ++ + A Sbjct: 85 PDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144 Query: 219 LEMLNFTPINGRPIRIMY----------SNRDPSLRKSGTAN---------IFIKNLDKS 341 + N ++GR +R+ S R+ S + G+ +++ NL Sbjct: 145 CQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWG 204 Query: 342 IDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 +D AL F G ++ KV D +G S+G+GFV Y E + AIE L+G+ +N + Sbjct: 205 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 264 Query: 519 VYVGP 533 + V P Sbjct: 265 IRVSP 269 Score = 52.0 bits (123), Expect = 2e-06 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 16/126 (12%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 IF+ NL S D+ AL + F GN+ +V D G S+G+GFV E AA ++ Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 492 NGMLMNDK--KVYVGPFVRKQE----------RDNSPGSVKF---NNVYVKNLAETTTED 626 NG ++ + +V GP K+E R S G F N VYV NLA +D Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQD 208 Query: 627 DLKEIF 644 L+ +F Sbjct: 209 ALETLF 214 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/83 (32%), Positives = 45/83 (54%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +YVG+L V L +F++ G VV +V D S +S G+ +V Y++ + A+E L Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255 Query: 231 NFTPINGRPIRIMYSNRDPSLRK 299 + +NGR IR+ + P R+ Sbjct: 256 DGVDLNGRAIRVSPAEARPPRRQ 278
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 76.3 bits (186), Expect = 7e-14 Identities = 44/151 (29%), Positives = 74/151 (49%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+LY+ L + D L + G +VS + D + K GY +V++++PA A +A+ Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 121 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L + + + +DP+ N++I NL S+D + L + FG ++S +V Sbjct: 122 ALKANGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRV 172 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 D +G S+G GF + E E A I NG Sbjct: 173 LRDSSGASRGVGFARMESTEKCEAVIGHFNG 203
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 75.9 bits (185), Expect = 1e-13 Identities = 43/151 (28%), Positives = 74/151 (49%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T+LY+ L D L + G +VS + D T+ K GY +V++++P+ A +A+ Sbjct: 56 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 115 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L + + + + +DP+ N++I NL S+D + L FG ++S ++ Sbjct: 116 ALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRI 166 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 D +G S+G GF + E E A I NG Sbjct: 167 LRDTSGTSRGVGFARMESTEKCEAIITHFNG 197
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 75.1 bits (183), Expect = 2e-13 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 26/185 (14%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L +V AQL +F G V V V D + +S G+ +V ++ ++ A + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 231 NFTPINGRPIRIMYSNRDP------------SLRKSGTA-------------NIFIKNLD 335 N ++GRP+R+ P S SG+ +++ NL Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212 Query: 336 KSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMND 512 +D+ AL F G ++ +V D +G SKG+GFV Y+ + AI+ L+G ++ Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272 Query: 513 KKVYV 527 +++ V Sbjct: 273 RQIRV 277 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/83 (32%), Positives = 46/83 (55%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +YVG+L V D L +F++ G VV RV D S +S G+ +V Y++ + A++ L Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 231 NFTPINGRPIRIMYSNRDPSLRK 299 + ++GR IR+ + P R+ Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQ 288
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 74.3 bits (181), Expect = 3e-13 Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYVG+L S+ +QL ++FA+ G V +V + D + +S G+A+V + +A A+ + Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANI-------------------FIKNLDKSIDNK 353 + + + GR +++ + P + + G + ++ NL ++ ++ Sbjct: 176 DGSQVGGRTVKVNF----PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQ 231 Query: 354 ALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 L D F +S KV D +G S+G+GF+ + EA ++A++ +N Sbjct: 232 GLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMN 279 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/72 (30%), Positives = 40/72 (55%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYV +L ++ L D FA G +S +V D +S +S G+ ++ +++ AL+ + Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278 Query: 231 NFTPINGRPIRI 266 N + GRP+R+ Sbjct: 279 NEVELEGRPLRL 290
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 73.2 bits (178), Expect = 6e-13 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 36/204 (17%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L SV A L +F + G V V V D S +S G+ +V +T + A + Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTAN-------------------------------- 314 N I+GR IR+ N P+ K ++ Sbjct: 150 NGYEIDGRAIRV---NAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDS 206 Query: 315 ---IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAI 482 +++ NL +D+ AL + F GN++ KV D +G S+G+GFV Y + + AI Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266 Query: 483 EKLNGMLMNDKKVYVGPFVRKQER 554 + LNG+ ++ + + V + R Sbjct: 267 DSLNGIDLDGRSIRVSAAEERPRR 290 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/79 (32%), Positives = 45/79 (56%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +YVG+L V D L ++F++ G VV +V D S +S G+ +V Y++ + A++ L Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 231 NFTPINGRPIRIMYSNRDP 287 N ++GR IR+ + P Sbjct: 270 NGIDLDGRSIRVSAAEERP 288 Score = 46.6 bits (109), Expect = 6e-05 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Frame = +3 Query: 294 RKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAA 470 R S +F+ NL S+D+ AL F GN+ +V D +G S+G+GFV E Sbjct: 83 RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEV 142 Query: 471 HAAIEKLNGMLMNDK--KVYVGPFVRKQERDNSPGSVKFNNVY 593 AA ++ NG ++ + +V GP K+E + G N+ Y Sbjct: 143 EAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 185
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 73.2 bits (178), Expect = 6e-13 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 36/204 (17%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L SV A L +F + G V V V D + +S G+ +V +T + A + Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTAN-------------------------------- 314 N I+GR IR+ N P+ K ++ Sbjct: 149 NGYEIDGRAIRV---NAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDS 205 Query: 315 ---IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAI 482 +++ NL +D+ AL + F GN++ KV D +G S+G+GFV Y + + AI Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAI 265 Query: 483 EKLNGMLMNDKKVYVGPFVRKQER 554 + LNG+ ++ + + V + R Sbjct: 266 DSLNGVDLDGRSIRVSAAEERPRR 289 Score = 52.8 bits (125), Expect = 9e-07 Identities = 26/79 (32%), Positives = 45/79 (56%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +YVG+L V D L ++F++ G VV +V D S +S G+ +V Y++ + A++ L Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 231 NFTPINGRPIRIMYSNRDP 287 N ++GR IR+ + P Sbjct: 269 NGVDLDGRSIRVSAAEERP 287 Score = 46.6 bits (109), Expect = 6e-05 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%) Frame = +3 Query: 294 RKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAA 470 R S +F+ NL S+D+ AL F GN+ +V D G S+G+GFV E Sbjct: 82 RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEV 141 Query: 471 HAAIEKLNGMLMNDK--KVYVGPFVRKQERDNSPGSVKFNNVY 593 AA ++ NG ++ + +V GP K+E + G N+ Y Sbjct: 142 EAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 184
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 72.8 bits (177), Expect = 8e-13 Identities = 45/173 (26%), Positives = 96/173 (55%), Gaps = 8/173 (4%) Frame = +3 Query: 36 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 215 + T+L++G+L+ V +A + V+ +G V V++ R+ + + GY +V + +P +A+ Sbjct: 90 YQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASS 149 Query: 216 ALEMLNFTPING--RPIRIMYSN----RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCV 377 A+ M N PI G ++ +++ R+ S+ K+ +IF+ +L +++ ++ F Sbjct: 150 AMSM-NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFAS 208 Query: 378 -FGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG 530 + + S K+ TDP S+GYGFV++ + +A+ ++ G + D+ + VG Sbjct: 209 RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVG 261 Score = 60.5 bits (145), Expect = 4e-09 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 29/187 (15%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFA-QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 S++VGDL +V + ++ +FA + S ++ D + S GY +V + D AL Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246 Query: 225 MLN----------------------FTPINGRPIRI----MYSNRDPSLRKSGTAN--IF 320 + F+P+N P+ + YS P + + TAN +F Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVF 306 Query: 321 IKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGM 500 + L K + + L F FG I+ K+ P G KG GFVQ+ ++A AI +L G Sbjct: 307 VGGLSKFVSEEELKYLFQNFGEIVYVKI---PPG--KGCGFVQFVNRQSAEIAINQLQGY 361 Query: 501 LMNDKKV 521 + + ++ Sbjct: 362 PLGNSRI 368
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 72.0 bits (175), Expect = 1e-12 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG + + + ++ F Q G V+ V + +D + + G +V Y T DA RA+ L Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181 Query: 231 N---FTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + P P+++ Y++ + + +F+ +L+K K + + F FG++ Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVY 241 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 + D +S+G GFV+Y E A AAI+ LNG Sbjct: 242 LMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 71.6 bits (174), Expect = 2e-12 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 14/180 (7%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVG+L V +A + +F+QIG + ++ D Y +V ++ AA AL Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTAN-------------IFIKNLDKSIDNKALHDT 368 +N I G+ +++ ++ S +K +++ +F+ +L I + + Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125 Query: 369 FCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK 545 F FG I +V D A G+SKGYGFV + A AI+++ G + +++ RK Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 Score = 69.7 bits (169), Expect = 7e-12 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 20/169 (11%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VGDL + + FA G + RV +D+ + KS GY +V++ DA A++ + Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 231 NFTPINGRPIRIMYSNRDPSLRKS--------------------GTANIFIKNLDKSIDN 350 + GR IR ++ R P KS ++ + + Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 + + TF FG I+ +V D KGY FV++ E+A AI +NG Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNG 271
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 71.6 bits (174), Expect = 2e-12 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 14/180 (7%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +LYVG+L V +A + +F+QIG + ++ D Y +V ++ AA AL Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTAN-------------IFIKNLDKSIDNKALHDT 368 +N I G+ +++ ++ S +K +++ +F+ +L I + + Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAA 125 Query: 369 FCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRK 545 F FG I +V D A G+SKGYGFV + A AI+++ G + +++ RK Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 Score = 69.7 bits (169), Expect = 7e-12 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 20/169 (11%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VGDL + + FA G + RV +D+ + KS GY +V++ DA A++ + Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 231 NFTPINGRPIRIMYSNRDPSLRKS--------------------GTANIFIKNLDKSIDN 350 + GR IR ++ R P KS ++ + + Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 + + TF FG I+ +V D KGY FV++ E+A AI +NG Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNG 271
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 70.9 bits (172), Expect = 3e-12 Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLG---------------YAY 182 +LYVG+L V + + +F+QIG S ++ + + + Y + Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69 Query: 183 VNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTAN---IFIKNLDKSIDNK 353 V + DAA AL +N I G+ +++ ++ PS +K T+N +F+ +L I + Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTE 128 Query: 354 ALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG 530 + F FG I +V D A G+SKGYGFV + A AI + G + +++ Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188 Query: 531 PFVRK 545 RK Sbjct: 189 WATRK 193 Score = 67.4 bits (163), Expect = 3e-11 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 20/169 (11%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VGDL + + FA G + RV +D+ + KS GY +V++ DA A+ + Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 231 NFTPINGRPIRIMYSNRDPSLRKS--------------------GTANIFIKNLDKSIDN 350 + GR IR ++ R P KS ++ + + + Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 + + TF FG I+ +V + KGY FV++ E+A AI +NG Sbjct: 236 QLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 279
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 70.1 bits (170), Expect = 5e-12 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 10/170 (5%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +YVG + +++ + F G + S+ + D ++K G+A+V Y P A ALE + Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 231 NFTPINGRPIRIMYSNRDPSLRK---------SGTANIFIKNLDKSIDNKALHDTFCVFG 383 N + GR I++ + P ++ I++ ++ + + + F FG Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFG 251 Query: 384 NILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG 530 IL CK+A + + KGYGF++Y +A AI +N + + + VG Sbjct: 252 PILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVG 301 Score = 59.7 bits (143), Expect = 7e-09 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKL 491 +++ ++ + + F FG I S ++ DP + KG+ FV+YE E A A+E++ Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 492 NGMLMNDKKVYVG-----PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 NG LM + + VG P ++ + + FN +YV ++ +E+D+K +F Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVF 247
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 69.7 bits (169), Expect = 7e-12 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 7/166 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L V +L +F G V V + + +S G+ +V +T +A +A+E+L Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116 Query: 231 NFTPINGRPIRIMYS------NRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 N ++GR + + + R P + +++ NL +D L F G ++ Sbjct: 117 NGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVV 176 Query: 393 SCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 S +V +D G S+G+GFV + + AI L+G ++ + V V Sbjct: 177 SARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/83 (28%), Positives = 47/83 (56%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P+ +YVG+L V ++L +F++ G VVS RV D + +S G+ +V ++ ++ A Sbjct: 147 PSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDA 206 Query: 219 LEMLNFTPINGRPIRIMYSNRDP 287 + L+ ++GR +R+ + P Sbjct: 207 IAALDGQTLDGRAVRVNVAEERP 229 Score = 41.6 bits (96), Expect = 0.002 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIE 485 A +F+ NL +D++ L F G + +V + S+G+GFV E A A+E Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114 Query: 486 KLNGMLMNDKKVYVGPFVRKQERDNSP-GSVKFN-NVYVKNLAETTTEDDLKEIF 644 LNG M+ +++ V + + +P G + + VYV NL L+++F Sbjct: 115 LLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF 169
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 69.7 bits (169), Expect = 7e-12 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 9/210 (4%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L +L ++ + +L +VF + +R+ KS G AY+ + + ADA + L Sbjct: 393 ARTLLAKNLSFNITEDELKEVFED---AMEIRLVSQ--DGKSKGIAYIEFKSEADAEKNL 447 Query: 222 EMLNFTPINGRPIRIMYS----NRDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTFC 374 E I+GR + + Y+ R K+ T + + NL S + L + Sbjct: 448 EEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEE--- 504 Query: 375 VFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 VF KV +P G+ KGY F+++ E A A+ N M + G +R + + Sbjct: 505 VFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE------GRTIRLELQ 558 Query: 555 DNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 ++ S ++VK L+E TTE+ LKE F Sbjct: 559 GSNSRSQPSKTLFVKGLSEDTTEETLKESF 588 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/120 (30%), Positives = 59/120 (49%) Frame = +3 Query: 162 KSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKS 341 K GYA++ + + DA AL N I GR IR+ + + S T +F+K L + Sbjct: 521 KPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKT--LFVKGLSED 578 Query: 342 IDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 + L ++F G++ + V G SKG+GFV + +E A AA E + ++ KV Sbjct: 579 TTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 636 Score = 51.2 bits (121), Expect = 3e-06 Identities = 44/204 (21%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++G+L+ + +L +++ + V DV + + + YV++ + D +ALE+ Sbjct: 309 NLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKALEL 367 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 + G I++ S + + KNL +I L + VF + + ++ Sbjct: 368 TGL-KVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKE---VFEDAMEIRLV 423 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV---YVGPFVRKQER--DNSPGS 572 + G+SKG +++++ + A +E+ G ++ + V Y G ++QER S S Sbjct: 424 SQD-GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWS 482 Query: 573 VKFNNVYVKNLAETTTEDDLKEIF 644 + + + NL+ + T++ L+E+F Sbjct: 483 GESKTLVLSNLSYSATKETLEEVF 506
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 68.9 bits (167), Expect = 1e-11 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 11/212 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L +L ++ + +L +VF V +R+ +S G AY+ + + ADA + L Sbjct: 395 ARTLLAKNLSFNITEDELKEVFED---AVEIRLVSQ--DGRSKGIAYIEFKSEADAEKNL 449 Query: 222 EMLNFTPINGRPIRIMYSN----RDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTFC 374 E I+GR + + Y+ R K+ T + + NL S + L + Sbjct: 450 EEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQE--- 506 Query: 375 VFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 VF KV +P G+SKGY F+++ E A A+ N M + + + + Q Sbjct: 507 VFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR----LELQGP 562 Query: 555 DNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 SP S ++VK L+E TTE+ LKE F Sbjct: 563 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF 594 Score = 60.1 bits (144), Expect = 6e-09 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L + +L S + L +VF + ++V ++ KS GYA++ + + DA AL Sbjct: 489 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHG-KSKGYAFIEFASFEDAKEALNS 544 Query: 228 LNFTPINGRPIRIMYSNR--DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 N I GR IR+ P+ R + +F+K L + + L ++F G++ + Sbjct: 545 CNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARI 602 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 V G SKG+GFV + +E A AA E + ++ KV Sbjct: 603 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 642 Score = 55.5 bits (132), Expect = 1e-07 Identities = 50/207 (24%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQI---GGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 +L++G+L+ + A+L +++ + +V V R T+RK + YV++ + D +A Sbjct: 311 NLFIGNLNPNKSVAELKVAISELFAKNDLAAVDV-RTGTNRK---FGYVDFESAEDLEKA 366 Query: 219 LEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSC 398 LE+ + G I++ S + + KNL +I L + VF + + Sbjct: 367 LELTGL-KVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKE---VFEDAVEI 422 Query: 399 KVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV---YVGPFVRKQER--DNS 563 ++ + G SKG +++++ + A +E+ G ++ + V Y G ++QER NS Sbjct: 423 RLVSQD-GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNS 481 Query: 564 PGSVKFNNVYVKNLAETTTEDDLKEIF 644 S + + + NL+ + TE+ L+E+F Sbjct: 482 TWSGESKTLVLSNLSYSATEETLQEVF 508
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 67.8 bits (164), Expect = 3e-11 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +++VG L +V D L F + G +V RV D S +S GY YV++ TP A A+ Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323 Query: 228 LNFTPINGRPIRIMYSNRDP------SLRKSG---------TANIFIKNLDKSIDNKALH 362 I+GR + + SN P + +++G + +F+ NL + L Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLS 383 Query: 363 DTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNG 497 F G+I S ++ TDP +G KG+G+V + ++A +E +NG Sbjct: 384 TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/81 (30%), Positives = 43/81 (53%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S P+ +++VG+L + + L F G + S+R+ D S + G+ YV ++ A Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421 Query: 213 RALEMLNFTPINGRPIRIMYS 275 + +EM N I GRP R+ +S Sbjct: 422 KCVEM-NGHFIAGRPCRLDFS 441
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 67.0 bits (162), Expect = 5e-11 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L V L +F Q G V V + + +S G+ +V +T +A +A+EM Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197 Query: 231 NFTPINGRPIRIMYSNRD------PSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNIL 392 N +NGR + + + R P + I++ N+ ID+ L F G ++ Sbjct: 198 NRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVV 257 Query: 393 SCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 S +V D G S+G+GFV + AI L+G ++ + + V Sbjct: 258 SARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303 Score = 40.4 bits (93), Expect = 0.005 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIE 485 A +F+ NL +D++ L F G + +V + +S+G+GFV E A A+E Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195 Query: 486 KLNGMLMNDKKVYVGPFVRKQERDNSPGSV--KFNNVYVKNLAETTTEDDLKEIF 644 N +N + + V R+ ER P + +YV N+ + L+++F Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF 250
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 66.2 bits (160), Expect = 8e-11 Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 12/213 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L +L V +L +VF + V KS G AY+ + T ADA + Sbjct: 392 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTF 446 Query: 222 EMLNFTPINGRPIRIMYS-----NRDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTF 371 E T I+GR I + Y+ N+D K+ T + + NL S + L + Sbjct: 447 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQE-- 504 Query: 372 CVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 VF KV + G+SKGY F+++ E A A+ N + + + + Q Sbjct: 505 -VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR----LELQG 559 Query: 552 RDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 SP S ++VK L+E TTE+ LKE F Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESF 592 Score = 60.8 bits (146), Expect = 3e-09 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L + +L S + L +VF + ++V ++ KS GYA++ + + DA AL Sbjct: 487 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNS 542 Query: 228 LNFTPINGRPIRIMYSNR--DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 N I GR IR+ P+ R + +F+K L + + L ++F G++ + Sbjct: 543 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI 600 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 V G SKG+GFV + +E A AA E + ++ KV Sbjct: 601 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 640
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 66.2 bits (160), Expect = 8e-11 Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 12/213 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L +L V +L +VF + V KS G AY+ + T ADA + Sbjct: 391 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTF 445 Query: 222 EMLNFTPINGRPIRIMYS-----NRDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTF 371 E T I+GR I + Y+ N+D K+ T + + NL S + L + Sbjct: 446 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQE-- 503 Query: 372 CVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 VF KV + G+SKGY F+++ E A A+ N + + + + Q Sbjct: 504 -VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR----LELQG 558 Query: 552 RDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 SP S ++VK L+E TTE+ LKE F Sbjct: 559 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESF 591 Score = 60.8 bits (146), Expect = 3e-09 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L + +L S + L +VF + ++V ++ KS GYA++ + + DA AL Sbjct: 486 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNS 541 Query: 228 LNFTPINGRPIRIMYSNR--DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 N I GR IR+ P+ R + +F+K L + + L ++F G++ + Sbjct: 542 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI 599 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 V G SKG+GFV + +E A AA E + ++ KV Sbjct: 600 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 639
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 66.2 bits (160), Expect = 8e-11 Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 12/213 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L +L V +L +VF + V KS G AY+ + T ADA + Sbjct: 393 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTF 447 Query: 222 EMLNFTPINGRPIRIMYS-----NRDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTF 371 E T I+GR I + Y+ N+D K+ T + + NL S + L + Sbjct: 448 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQE-- 505 Query: 372 CVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 VF KV + G+SKGY F+++ E A A+ N + + + + Q Sbjct: 506 -VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR----LELQG 560 Query: 552 RDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 SP S ++VK L+E TTE+ LKE F Sbjct: 561 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESF 593 Score = 60.8 bits (146), Expect = 3e-09 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L + +L S + L +VF + ++V ++ KS GYA++ + + DA AL Sbjct: 488 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNS 543 Query: 228 LNFTPINGRPIRIMYSNR--DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 N I GR IR+ P+ R + +F+K L + + L ++F G++ + Sbjct: 544 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI 601 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 V G SKG+GFV + +E A AA E + ++ KV Sbjct: 602 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 641
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 66.2 bits (160), Expect = 8e-11 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L +L ++ + +L +VF + +R+ KS G AY+ + + ADA + L Sbjct: 392 ARTLLAKNLSFNITEDELKEVFED---ALEIRLVSQ--DGKSKGIAYIEFKSEADAEKNL 446 Query: 222 EMLNFTPINGRPIRIMYS----NRDPSLRKSGT-----ANIFIKNLDKSIDNKALHDTFC 374 E I+GR + + Y+ R K+ T + + NL S + L + Sbjct: 447 EEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQE--- 503 Query: 375 VFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 VF KV + G+SKGY F+++ E A A+ N M + + + + Q Sbjct: 504 VFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR----LELQGP 559 Query: 555 DNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 SP S ++VK L+E TTE+ LKE F Sbjct: 560 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF 591 Score = 60.5 bits (145), Expect = 4e-09 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L + +L S + L +VF + ++V ++ KS GYA++ + + DA AL Sbjct: 486 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQG-KSKGYAFIEFASFEDAKEALNS 541 Query: 228 LNFTPINGRPIRIMYSNR--DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 N I GR IR+ P+ R + +F+K L + + L ++F G++ + Sbjct: 542 CNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARI 599 Query: 402 VATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 V G SKG+GFV + +E A AA E + ++ KV Sbjct: 600 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 639 Score = 56.2 bits (134), Expect = 8e-08 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++G+L+ + A+L ++ + V DV + + + YV++ + D +ALE+ Sbjct: 308 NLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKALEL 366 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 + G I++ S + + KNL +I L + VF + L ++ Sbjct: 367 TGL-KVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKE---VFEDALEIRLV 422 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV---YVGPFVRKQER--DNSPGS 572 + G+SKG +++++ + A +E+ G ++ + V Y G ++QER NS S Sbjct: 423 SQD-GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWS 481 Query: 573 VKFNNVYVKNLAETTTEDDLKEIF 644 + + + NL+ + TE+ L+E+F Sbjct: 482 GESKTLVLSNLSYSATEETLQEVF 505
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 66.2 bits (160), Expect = 8e-11 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 9/148 (6%) Frame = +3 Query: 111 QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDP- 287 ++G V V + D KS G A V + +A E+LN ++GRP+++ DP Sbjct: 92 KVGEVTYVELLMDAEG-KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPD 147 Query: 288 ------SLRKSGT--ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGF 443 +++K+G + +F+ NLD + K L + F + G ++ + D G+S+G G Sbjct: 148 GEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGT 207 Query: 444 VQYERDEAAHAAIEKLNGMLMNDKKVYV 527 V +E+ A AI NG L+ D+ ++V Sbjct: 208 VTFEQSIEAVQAISMFNGQLLFDRPMHV 235 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IF++NL K L D F G++L + + G+SKG G V++E E A A +N Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 672 Query: 495 GMLMNDKKVYV 527 GM ++ +++ V Sbjct: 673 GMKLSGREIDV 683 Score = 30.4 bits (67), Expect = 4.7 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A ++V +L L D F + G V+ + + + KS G V + +P A RA Sbjct: 611 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERAC 668 Query: 222 EMLNFTPINGRPIRI 266 M+N ++GR I + Sbjct: 669 RMMNGMKLSGREIDV 683
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 65.5 bits (158), Expect = 1e-10 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 7/176 (3%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L + L +F Q G V V + + +S G+ +V +T +A +A+E+ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG------TANIFIKNLDKSIDNKALHDTFCVFGNIL 392 + +NGR + + + S + T I++ N+ ID+ L F G ++ Sbjct: 159 SQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV 218 Query: 393 SCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD 557 S +V D +G S+G+GFV + AI L+G ++ + + V + R+ Sbjct: 219 SARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/83 (33%), Positives = 48/83 (57%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P +YVG++ + DA+L VF++ G VVS RV D S +S G+ +V ++ A+ + A Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248 Query: 219 LEMLNFTPINGRPIRIMYSNRDP 287 + L+ ++GR IR+ + P Sbjct: 249 IANLDGQTLDGRTIRVNAAEERP 271
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 65.5 bits (158), Expect = 1e-10 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 11/185 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +++ L ++ L + F+ +G V VR+ D SR+S G AYV + + R Sbjct: 152 ARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEF-VDVSSVRLA 210 Query: 222 EMLNFTPINGRPIRIMYSNRDPS--------LRK--SGTANIFIKNLDKSIDNKALHDTF 371 L + G PI + S + + L+K +G +++ +L +I L F Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270 Query: 372 CVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ 548 FG I S ++ D G SKGYGF+ + E A A+E+LNG + + + VG + Sbjct: 271 EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330 Query: 549 ERDNS 563 + ++ Sbjct: 331 DASSA 335
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 65.5 bits (158), Expect = 1e-10 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +3 Query: 309 ANIFIKNLDKSIDN--KALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAA 479 +N+++KNLD ++ L D F FG+ILS +A P +G SKGYGFV + + EAA A Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 + LNGM++ K+++V RK +R + N K +E T + D K +F Sbjct: 442 KDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFAN----KPTSEQTAQQDNKALF 492 Score = 35.4 bits (80), Expect = 0.15 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQD--AQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPA 203 S ++LYV +LD +V +QL D+F+ G ++S + S S GY +V + Sbjct: 377 SPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIE 436 Query: 204 DAARALEMLNFTPINGRPIRIMYSNR 281 A RA + LN + + I + ++ R Sbjct: 437 AAVRAKDTLNGMMVGKKRIFVCFAER 462
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 65.1 bits (157), Expect = 2e-10 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 11/185 (5%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +++ L ++ L + F+ +G V VR+ D SR+S G AYV + + A+ Sbjct: 152 ARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI 211 Query: 222 EMLNFTPINGRPIRIMYSNRDPS--------LRK--SGTANIFIKNLDKSIDNKALHDTF 371 + + G PI + S + + L+K +G +++ +L +I L F Sbjct: 212 GLTG-QRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270 Query: 372 CVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ 548 FG I S ++ D G SKGYGF+ + E A A+E+LNG + + + VG + Sbjct: 271 EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 330 Query: 549 ERDNS 563 + ++ Sbjct: 331 DASSA 335
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 64.7 bits (156), Expect = 2e-10 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 10/211 (4%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +L+V +L V + ++ +VF + VR+ + S G AY+ + T A+A +AL Sbjct: 370 ARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEG-SSKGMAYIEFKTEAEAEKAL 425 Query: 222 EMLNFTPINGRPIRIMYSNR--DPSLRKSG----TANIFIKNLDKSIDNKALHDTFCVFG 383 E T ++GR + I Y+ +K G + + + NL + + L + +F Sbjct: 426 EEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQE---LFK 482 Query: 384 NILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNS 563 S K+ + G KGY FV++ E A A+ N + + + + ++ N Sbjct: 483 KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNM 542 Query: 564 PGSVKFN----NVYVKNLAETTTEDDLKEIF 644 FN ++V+ L+E TTE+ L+E F Sbjct: 543 NARGGFNQQSKTLFVRGLSEDTTEETLRESF 573 Score = 62.4 bits (150), Expect = 1e-09 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L V +L + + L ++F + S+++ ++ R GYA+V + T DA AL Sbjct: 462 TLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPK-GYAFVEFPTAEDAKEALNS 517 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSG----------TANIFIKNLDKSIDNKALHDTFCV 377 N T I GR IR+ +S+ PS +K + +F++ L + + L ++F Sbjct: 518 CNNTEIEGRAIRLEFSS--PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF-- 573 Query: 378 FGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 +S ++ TD G SKG+GFV + E A AA E + ++ KV Sbjct: 574 -EGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621 Score = 42.7 bits (99), Expect = 0.001 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Frame = +3 Query: 249 GRPIRIMYSNRDPSLRKSGTA------NIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 G+ + M + P +K T ++F+KNL + D + L F + +V+ Sbjct: 255 GKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSE 314 Query: 411 DPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNV 590 G SK +G+V + E A++ LNG + ++ + K+ + + Sbjct: 315 VRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTL 373 Query: 591 YVKNLAETTTEDDLKEIF 644 +VKNL TED++K +F Sbjct: 374 FVKNLPYRVTEDEMKNVF 391
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 64.7 bits (156), Expect = 2e-10 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 11/197 (5%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 S+ ++YVG++D + QL+++F QI V+ ++ +D + GYA++ + DA Sbjct: 4 SADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDA 63 Query: 210 ARALEMLNFT-PINGRPIRIMY-------SNRDPSLRKS---GTANIFIKNLDKSIDNKA 356 A++++N T + R I++ +N ++ K A +FIKNL SID+ Sbjct: 64 QYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQ 123 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 536 L F FG ++ + +V +E E A AI+ LN L+ + ++ V Sbjct: 124 LVKIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVD-- 181 Query: 537 VRKQERDNSPGSVKFNN 587 ++N G+ K+ + Sbjct: 182 --YAFKENGKGNAKYGD 196
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 12/166 (7%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVC-----RDVTSRKSLGYAYVNYNTPA 203 P S++V +L+ S AQL + F G V +V ++ + S+G+ ++ + T Sbjct: 610 PTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKE 669 Query: 204 DAARALEMLNFTPINGRPIRIMYSNRDPSLRKSG-------TANIFIKNLDKSIDNKALH 362 A + ++ I+G I++ S++ SL K+ + I +KNL K + Sbjct: 670 QAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVF 729 Query: 363 DTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGM 500 + F FG + S +V ++G+ FV++ A A+++L G+ Sbjct: 730 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGV 775 Score = 32.7 bits (73), Expect = 0.94 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAI 482 T +F++N+ + F +G + VA D G+SKG+ +V ++ E HAA Sbjct: 300 TGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPE--HAA- 356 Query: 483 EKLNGMLMNDKKVYVG 530 N + DK+++ G Sbjct: 357 ---NAYIELDKQIFQG 369 Score = 32.7 bits (73), Expect = 0.94 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +3 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 I K+ D +G S+ + F+ Y ++ A AIE NG ++ ++ V Sbjct: 37 ITDVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEV 83
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 63.2 bits (152), Expect = 7e-10 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 22/190 (11%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+VG L S + QL ++F+Q+G V V + S+ G+ YV ++ D RAL+ Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Query: 228 L------------------NFTPINGRPIRIMYSNRDPSLRKSGTAN----IFIKNLDKS 341 + N T G+ ++P +K+ A+ + I+NL Sbjct: 64 ITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFK 123 Query: 342 IDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 L F FG +L + P G+ +G+GFVQ++ A A++ +N + + V Sbjct: 124 CSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 183 Query: 522 YVGPFVRKQE 551 V V K + Sbjct: 184 AVDWAVAKDK 193 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 19/129 (14%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKL 491 +F+ L S ++ L + F G + C V T+ ++ +G+G+V + E A++++ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 492 N---GMLMN---DKKVYVGPFVRKQERDNS------PGSVKFN------NVYVKNLAETT 617 G +N KK K + +NS P + K + ++NL+ Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 124 Query: 618 TEDDLKEIF 644 +EDDLK +F Sbjct: 125 SEDDLKTVF 133
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 62.8 bits (151), Expect = 8e-10 Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 10/185 (5%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPA 203 P S+++ +L+ QL D F G V +V ++ S+G+ +V + T Sbjct: 638 PTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKE 697 Query: 204 DAARALEMLNFTPINGRPIRIMYSNRDPSL-----RKSGTANIFIKNLDKSIDNKALHDT 368 A + ++ T I+G I++ S+R + +K+ I +KNL K + + Sbjct: 698 QATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKNGKIIVKNLPFEATRKDVFEL 757 Query: 369 FCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ 548 F FG + S +V ++G+ FV++ + A A+++L G+ + +++ + P +Q Sbjct: 758 FNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQP--AEQ 815 Query: 549 ERDNS 563 E N+ Sbjct: 816 EAANA 820 Score = 55.8 bits (133), Expect = 1e-07 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%) Frame = +3 Query: 276 NRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESK------GY 437 + D + T +IFIKNL+ ++ L D F VF + +V T P + K G+ Sbjct: 629 DEDEQVVDGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGF 688 Query: 438 GFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGS-----VKFNNVYVKN 602 GFV++ E A A I ++G +++ K+ ++ R + GS K + VKN Sbjct: 689 GFVEFRTKEQATAVISAMDGTVIDGHKIQ----LKLSHRQGNAGSQEKKKAKNGKIIVKN 744 Query: 603 LAETTTEDDLKEIF 644 L T D+ E+F Sbjct: 745 LPFEATRKDVFELF 758 Score = 33.1 bits (74), Expect = 0.72 Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 9/207 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++ ++ S + +F+ G + V V D + S G+AYV + P +A +A L Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386 Query: 231 NFTPINGRPIRIMYSN--RDPSLRKSGTANIFIKNLDKSIDNKALHD--TFCVFGNILSC 398 + GR + I+ ++ +D L + N+ +K + + KA TF ++ Sbjct: 387 DKQIFQGRLLHILAADEMKDHRLDEFDLKNMPLKK-QRELKKKAAASKATFSWNSLYMNQ 445 Query: 399 KVATDPAGESKGYGFVQYERDEAAHAAIEKL--NGMLMNDKKVYV---GPFVRKQERDNS 563 G E +++A+++ ++ D + Y G + K S Sbjct: 446 DAVLGSVAAKLGVQKADLIDPENSNSAVKQALAEAHVIGDVRKYFETKGVDLTKFSNLKS 505 Query: 564 PGSVKFNNVYVKNLAETTTEDDLKEIF 644 P + VKN TT ++L E+F Sbjct: 506 PSQRDDRVILVKNFPFGTTREELGELF 532
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 62.8 bits (151), Expect = 8e-10 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 11/174 (6%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A +++ L ++ L D F+ +G V VR+ D SR+S G AYV + A+ Sbjct: 165 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 224 Query: 222 EMLNFTPINGRPIRIMYSNRDPS--------LRKS--GTANIFIKNLDKSIDNKALHDTF 371 + + G PI + S + + L+K G +++ +L +I L F Sbjct: 225 GLTG-QRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF 283 Query: 372 CVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG 530 FG I + + D G SKGYGF+ + E A A+E+LNG + + + VG Sbjct: 284 EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 337 Score = 50.1 bits (118), Expect = 6e-06 Identities = 28/99 (28%), Positives = 51/99 (51%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYVG L ++ + L +F G + ++ + +D + +S GY ++ ++ A RALE L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSID 347 N + GRP+R+ + R G +I + D+ +D Sbjct: 325 NGFELAGRPMRVGHVTE----RLDGGTDITFPDGDQELD 359
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 62.8 bits (151), Expect = 8e-10 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQ--DAQLFDVFAQIGGVVSVRVCRDVTSRKS--LGYAYVNYNT 197 SS + +++V +L S+Q DA+L +F G VV +R + S + GY YV + Sbjct: 717 SSKDSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIR---PIFSNRGDFRGYRYVEFKE 773 Query: 198 PADAARALEMLNFTPINGRPIRIM-----YSNRDPSLRKSGTA----NIFIKNLDKSIDN 350 A +ALEM + + GRP+ + N D + + T+ +FI L S Sbjct: 774 EKSALQALEM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 832 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 + L + G + ++ T+ AG+ KG +V+YE + A A+ K++GM + + + V Sbjct: 833 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENVIKV 891
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 62.4 bits (150), Expect = 1e-09 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 20/213 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGY----------------- 176 +++VG+L V+ +L F + G V SVR + + +L Sbjct: 184 TVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSIN 243 Query: 177 AYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKA 356 AYV + AA+AL+ G IR+ ++ S K ++F+ NL +D A Sbjct: 244 AYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKR---SVFVGNLPYRVDESA 300 Query: 357 LHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F G+I++ ++ +P G +G+G+V +E +A H A+ KLN + +K+ V Sbjct: 301 LEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KLNNSELMGRKLRVMR 359 Query: 534 FVRKQ--ERDNSPGSVKFNNVYVKNLAETTTED 626 V K+ ++ NS SVK + K T+++ Sbjct: 360 SVNKEKLKQQNSNPSVKKDGSKSKQRLNFTSKE 392
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 62.4 bits (150), Expect = 1e-09 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Frame = +3 Query: 255 PIRIMYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE 425 P+ + N S + GT IF+ +D + L F +G++ K+ D AG Sbjct: 12 PVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGV 71 Query: 426 SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 SKGYGFV +E E A +++ + DKK+ +GP +RKQ+ Sbjct: 72 SKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ 113 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL--- 221 ++VG +D ++ L F+Q G V V++ D + S GY +V + T DA + L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQEA 93 Query: 222 EMLNF 236 E LN+ Sbjct: 94 EKLNY 98
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 62.4 bits (150), Expect = 1e-09 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Frame = +3 Query: 255 PIRIMYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE 425 P+ + N S + GT IF+ +D + L F +G++ K+ D AG Sbjct: 12 PVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGV 71 Query: 426 SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 SKGYGFV +E E A +++ + DKK+ +GP +RKQ+ Sbjct: 72 SKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ 113 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL--- 221 ++VG +D ++ L F+Q G V V++ D + S GY +V + T DA + L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQEA 93 Query: 222 EMLNF 236 E LN+ Sbjct: 94 EKLNY 98
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 61.2 bits (147), Expect = 2e-09 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQ--DAQLFDVFAQIGGVVSVRVCRDVTSRKS--LGYAYVNYNT 197 SS + +++V +L S+Q D +L +F G VV +R + S + GY YV + Sbjct: 699 SSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIR---PIFSNRGDFRGYCYVEFKE 755 Query: 198 PADAARALEMLNFTPINGRPIRIM-----YSNRDPSLRKSGTA----NIFIKNLDKSIDN 350 A +ALEM + + GRP+ + N D + + T+ +FI L S Sbjct: 756 EKSALQALEM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTK 814 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 + L + G + ++ T+ AG+ KG +V+YE + A A+ K++GM + + + V Sbjct: 815 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 873
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 61.2 bits (147), Expect = 2e-09 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 27/188 (14%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQI-GGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 215 P S++VGDL + +D+ LF F I S ++ D + S Y +V +++ + Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239 Query: 216 ALEMLNFTPINGRPIRIMY----------------------SNRDPSLRKSG----TANI 317 AL + GRP+RI SNR P+ + Sbjct: 240 ALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTV 299 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 F+ L ++ K L F FG IL+ K+ P G KG GFVQY AA AI + G Sbjct: 300 FVGGLASNLSEKDLQVCFQPFGRILNIKI---PFG--KGCGFVQYSEKSAAEKAINTMQG 354 Query: 498 MLMNDKKV 521 L+ + Sbjct: 355 ALVGTSHI 362
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 60.8 bits (146), Expect = 3e-09 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +++V L + +L+D F Q G V ++ RD S +S G AYV + D+ +A Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIA 299 Query: 228 LNFTPINGRPIRIMYSNRDPS--------LRKSGTANI-----FIKNLDKSIDNKALHDT 368 L+ + G P+ + + + + L ++ +A I + N+ ++ ++ + Sbjct: 300 LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAI 359 Query: 369 FCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 F FG+I + D SKG+G++QY +A A+EK+NG Sbjct: 360 FEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 60.8 bits (146), Expect = 3e-09 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Frame = +3 Query: 255 PIRIMYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE 425 P+ + N S + GT IF+ +D + L F +G++ K+ D AG Sbjct: 12 PVSPVPLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGV 71 Query: 426 SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 SKGYGF+ +E E A +++ + DKK+ +GP +RKQ+ Sbjct: 72 SKGYGFITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ 113 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL--- 221 ++VG +D + L F+Q G V V++ D + S GY ++ + T DA + L Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFITFETQEDAQKILQEA 93 Query: 222 EMLNF 236 E LN+ Sbjct: 94 EKLNY 98
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 60.5 bits (145), Expect = 4e-09 Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 24/216 (11%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGV-VSVRVCRDVT----SRKSLG------YAYVNYNT 197 LY+GDLD + + ++A +G ++VR+ + T SR S+G Y +V++ + Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115 Query: 198 PADAARALEMLNFTPINGRPIRIM--------YSNRDPSLR--KSGT-ANIFIKNLDKSI 344 AA AL + N I P + + YSN + SL KSG +IF+ +L ++ Sbjct: 116 STHAANAL-LKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174 Query: 345 DNKALHDTFCV-FGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKK 518 L + F + + K+ D G SKGYGFV++ + A+ ++ G+ +N + Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234 Query: 519 VYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTED 626 + VGP +Q+ V NN Y ++ + E+ Sbjct: 235 IKVGPTSGQQQH------VSGNNDYNRSSSSLNNEN 264 Score = 42.0 bits (97), Expect = 0.002 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 1/200 (0%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFA-QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 S++VGDL +V ++QLF++F + ++ D + S GY +V + + AL Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 + +NGR I++ ++ + N S++N+ + F Sbjct: 224 EMQGVFLNGRAIKV---GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFL---------- 270 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFN 584 SKG F+ + G N ++ P V++Q N Sbjct: 271 -------SKGQSFLSNGNNNM---------GFKRNHMSQFIYP-VQQQPSLNHFTDPNNT 313 Query: 585 NVYVKNLAETTTEDDLKEIF 644 V++ L+ TED+L+ F Sbjct: 314 TVFIGGLSSLVTEDELRAYF 333 Score = 30.4 bits (67), Expect = 4.7 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3 Query: 279 RDPSLRKSGTAN---IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQ 449 + PSL N +FI L + L F FG I+ K+ P G K GFVQ Sbjct: 300 QQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKI---PVG--KCCGFVQ 354 Query: 450 YERDEAAHAAIEKLNGMLMNDKKV 521 Y +A AAI + G + + +V Sbjct: 355 YVDRLSAEAAIAGMQGFPIANSRV 378
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 60.1 bits (144), Expect = 6e-09 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQ--LFDVFAQIGGVVSVRVCRDVTSRKS--LGYAYVNYNT 197 SS + +++V +L S+++ + L +F G VV +R + S + GY YV + Sbjct: 699 SSKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIR---PIFSNRGDFRGYCYVEFGE 755 Query: 198 PADAARALEMLNFTPINGRPIRI---MYSNRDPSL---RKSGTAN---IFIKNLDKSIDN 350 A +ALE L+ + GRP+ + + +++P R S T +FI L S Sbjct: 756 EKSAQQALE-LDRKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTK 814 Query: 351 KALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 + L D G + ++ T+ AG+ KG +V+YE + A A+ K++GM + + + V Sbjct: 815 EELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKV 873
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 59.7 bits (143), Expect = 7e-09 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Frame = +3 Query: 30 SSFPATS----LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNT 197 + FP S L+VG+L V L +F Q G V V + + +S G+ +V ++ Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200 Query: 198 PADAARALEMLNFTPINGRPIRIMYS-------NRDPSLRKSGTANIFIKNLDKSIDNKA 356 +A A+E N +NGR + + + R P + + +++ NL +DN Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF-RVYVGNLPWDVDNGR 259 Query: 357 LHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 L F G ++ +V D G S+G+GFV + + AI L+G + + + V Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317 Score = 37.4 bits (85), Expect = 0.038 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHA 476 S A +F+ NL ++++AL F G + +V + +S+G+GFV + A Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206 Query: 477 AIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV--KFNNVYVKNLAETTTEDDLKEIF 644 A+EK N +N + + V + R V VYV NL L+++F Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 59.7 bits (143), Expect = 7e-09 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 18/186 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVR----VCRDVTSRKSLGY------------- 176 +++VG+L V+ +L F + G V SVR + + T K L Sbjct: 190 TVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSIN 249 Query: 177 AYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKA 356 AYV + + AA+AL+ G IR+ ++ S K ++F+ NL I++ A Sbjct: 250 AYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKR---SVFVGNLPYKIEDSA 306 Query: 357 LHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F G+I++ ++ +P G +G+G+V +E +A H A+ KLN + +K+ V Sbjct: 307 LEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KLNNSELMGRKLRVMR 365 Query: 534 FVRKQE 551 V K++ Sbjct: 366 SVNKEK 371 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/84 (29%), Positives = 45/84 (53%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG+L ++D+ L + F G +V+VR+ R+ + G+ YV + DA Sbjct: 292 SVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFEN-TDAVHLALK 350 Query: 228 LNFTPINGRPIRIMYSNRDPSLRK 299 LN + + GR +R+M S L++ Sbjct: 351 LNNSELMGRKLRVMRSVNKEKLKQ 374
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 59.7 bits (143), Expect = 7e-09 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Frame = +3 Query: 294 RKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAA 470 ++S N+ + L + + ++ L+ F G I +C++ D G S GY FV + + + Sbjct: 122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 181 Query: 471 HAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 AI+ LNG+ + +K++ V + R PG S+K N+YV NL T T+D L IF Sbjct: 182 QRAIKVLNGITVRNKRLKVS-YAR-------PGGESIKDTNLYVTNLPRTITDDQLDTIF 233
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 59.7 bits (143), Expect = 7e-09 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEK 488 N+ + L + + ++ L+ F G I +C++ D G S GY FV + + A AI+ Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 LNG+ + +K++ V + R PG S+K N+YV NL T T+D+L++IF Sbjct: 146 LNGVTVRNKRLKVS-YAR-------PGGESIKDTNLYVTNLPRTITDDELEKIF 191
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 59.3 bits (142), Expect = 9e-09 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 15/167 (8%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR-KSLGYAYVNYNTPADAARA 218 + S++VG+L L + F+QIG VV + +TSR G V + D RA Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADI---ITSRGHHRGMGTVEFTNSDDVDRA 191 Query: 219 LEMLNFTPINGRPIRIMYSNRDPS-------------LRKSG-TANIFIKNLDKSIDNKA 356 + + R I + N PS LR + T + +KNL S++ +A Sbjct: 192 IRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQA 251 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 L D F GN+ V D G S G G V + + H AIEK NG Sbjct: 252 LKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNG 298 Score = 40.8 bits (94), Expect = 0.003 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 17/145 (11%) Frame = +3 Query: 261 RIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYG 440 R + S + + ++ + +IF+ NL + L + F G ++ + T G +G G Sbjct: 120 RELDSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITS-RGHHRGMG 178 Query: 441 FVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV--------------- 575 V++ + AI + +G D+K++V +DN P S Sbjct: 179 TVEFTNSDDVDRAIRQYDGAFFMDRKIFV-------RQDNPPPSNNIKERKALDRGELRH 231 Query: 576 --KFNNVYVKNLAETTTEDDLKEIF 644 K + V VKNL + LK+IF Sbjct: 232 NRKTHEVIVKNLPASVNWQALKDIF 256 Score = 37.0 bits (84), Expect = 0.050 Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 28/174 (16%) Frame = +3 Query: 57 VGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNF 236 V +L SV L D+F + G V V D S G V++ D RA+E N Sbjct: 240 VKNLPASVNWQALKDIFKECGNVAHADVELDGDG-VSTGSGTVSFYDIKDLHRAIEKYNG 298 Query: 237 TPINGRPIRIM-------YSNRDP------------SLRK-------SGTAN--IFIKNL 332 I G + + +S+ D RK G N I+ NL Sbjct: 299 YSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLIYCSNL 358 Query: 333 DKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 S L+D F G + + ++ D G G V+Y+ + A IE+LN Sbjct: 359 PFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLN 412
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 58.9 bits (141), Expect = 1e-08 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHA 476 S N+ + L + + ++ L+ F G I +C++ D G S GY FV + + + Sbjct: 107 SNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQR 166 Query: 477 AIEKLNGMLMNDKKVYVGPFVRKQERDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 AI+ LNG+ + +K++ V + R PG S+K N+YV NL T T+D L IF Sbjct: 167 AIKSLNGITVRNKRLKVS-YAR-------PGGESIKDTNLYVTNLPRTITDDQLDTIF 216
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEK 488 N+ + L + + ++ L+ F G I +C++ D G S GY FV + + A AI+ Sbjct: 103 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKT 162 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 +NG+ + +K++ V + R PG S+K N+YV NL T T+D+L++IF Sbjct: 163 VNGITVRNKRLKVS-YAR-------PGGESIKDTNLYVTNLPRTITDDELEKIF 208
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/83 (36%), Positives = 45/83 (54%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 +T L++G L DA L D FA G VV +V D + +S G+ +VN+N A A+ Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 222 EMLNFTPINGRPIRIMYSNRDPS 290 ++ +NGR IR+ +N PS Sbjct: 94 SEMDGKELNGRHIRVNPANDRPS 116 Score = 55.8 bits (133), Expect = 1e-07 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +3 Query: 288 SLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDE 464 SLR T +FI L D+ +L D F FG+++ KV D G S+G+GFV + + Sbjct: 29 SLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG 87 Query: 465 AAHAAIEKLNGMLMNDKKVYVGP 533 AA AAI +++G +N + + V P Sbjct: 88 AATAAISEMDGKELNGRHIRVNP 110
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Frame = +3 Query: 297 KSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAH 473 ++ N+ + L + + ++ L+ F G I +C++ D G S GY FV + + + Sbjct: 121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 180 Query: 474 AAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG--SVKFNNVYVKNLAETTTEDDLKEIF 644 AI+ LNG+ + +K++ V + R PG S+K N+YV NL T T+D L IF Sbjct: 181 RAIKVLNGITVRNKRLKVS-YAR-------PGGESIKDTNLYVTNLPRTITDDQLDTIF 231
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 57.4 bits (137), Expect = 4e-08 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 22/221 (9%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVR----VCRDVTSRKSLGY------------- 176 +++VG+L V+ +L F + G + SVR + + T K L Sbjct: 186 TVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNIN 245 Query: 177 AYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKA 356 AYV + + A +AL+ +G IR+ ++ S K ++F+ NL ++ A Sbjct: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKR---SVFVGNLPYKVEESA 302 Query: 357 LHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 + F G+I++ ++ D G KG+G+V +E ++ H A+ KLN + +K+ V Sbjct: 303 IEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMR 361 Query: 534 FVRKQERDNSPGSVKFNNVYVK----NLAETTTEDDLKEIF 644 V K++ + + NV N T E K +F Sbjct: 362 SVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLF 402 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/103 (29%), Positives = 52/103 (50%) Frame = +3 Query: 30 SSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADA 209 SS S++VG+L V+++ + F G +++VR+ RD + G+ YV + Sbjct: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDK 338 AL+ LN + + GR +R+M S K +N +KN+ K Sbjct: 342 HLALK-LNNSELMGRKLRVMRSVNKEKF-KQQNSNPRLKNVSK 382
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 57.4 bits (137), Expect = 4e-08 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 12/208 (5%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKS-----LGYAYVNYNTPA 203 P +++V +L+ + L D+F + G V V + S +G+ +V + T Sbjct: 615 PTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKE 674 Query: 204 DAARALEMLNFTPINGRPIRIMYSNRD------PSLRKSG-TANIFIKNLDKSIDNKALH 362 A A+ L+ ++G +++ S++ S++KSG ++ I IKNL K L Sbjct: 675 QANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLL 734 Query: 363 DTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR 542 + F FG + S +V ++G+ FV++ + A A+ +L G+ + +++ ++ Sbjct: 735 ELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRL----VMQ 790 Query: 543 KQERDNSPGSVKFNNVYVKNLAETTTED 626 E+D V+ + K + T++ Sbjct: 791 YAEQDPENAEVEIERMTKKVKKQVATQN 818 Score = 51.6 bits (122), Expect = 2e-06 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE------SKGYGFVQYERDEA 467 T +F+KNL+ + +AL D F + V T P + S G+GFV++ E Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQ 675 Query: 468 AHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVK----FNNVYVKNLAETTTEDDLK 635 A+ AI L+G +++ K+ + KQ S S+K + + +KNL T DL Sbjct: 676 ANVAISTLDGHVLDGHKLQL-KLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLL 734 Query: 636 EIF 644 E+F Sbjct: 735 ELF 737 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAI 482 T +FI+N+ + F +G + +A D G+SKG+ +VQ+ + E A A Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368 Query: 483 EKLNGMLMNDKKVYVGPFVRKQE 551 L+ + + +++ P +K++ Sbjct: 369 RSLDKQIFQGRLLHILPADKKKD 391
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 57.0 bits (136), Expect = 5e-08 Identities = 37/145 (25%), Positives = 72/145 (49%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LY+G+L V + +L ++F+ G + + + K+ + ++Y A+A RA + L Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFI----NAEKNFAFLKIDYR--ANAERAKKDL 168 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + +PIRI ++ ++R +KNL + N+ L +F VFG + + Sbjct: 169 DGRMRKNKPIRIRFAPNATTIR--------VKNLTPFVSNELLFKSFEVFGQVERAVIIV 220 Query: 411 DPAGESKGYGFVQYERDEAAHAAIE 485 D G++ G G V++ R A +A++ Sbjct: 221 DDRGKTTGEGIVEFARKSGAMSALK 245
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 57.0 bits (136), Expect = 5e-08 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE------SKGYGFVQYERDEA 467 T +IFIKNL+ S N+ L D F VF + +V T P + S G+GFV++ E Sbjct: 662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQ 721 Query: 468 AHAAIEKLNGMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKE 638 A+A I ++G +++ K+ + R+ + + + K + VKNL T D+ E Sbjct: 722 ANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFE 781 Query: 639 IF 644 +F Sbjct: 782 LF 783 Score = 56.6 bits (135), Expect = 6e-08 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 14/168 (8%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPA 203 P S+++ +L+ S + L D F G V +V + S+G+ +V + T Sbjct: 661 PTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKE 720 Query: 204 DAARALEMLNFTPINGRPIRIMYSNRDPSL---------RKSGTANIFIKNLDKSIDNKA 356 A + ++ T I+G I++ S+R S +KSG I +KNL K Sbjct: 721 QANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSG--KIIVKNLPFEATRKD 778 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGM 500 + + F FG + S +V ++G+ FV++ + A A+++L+G+ Sbjct: 779 VFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGV 826 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 I K+ D GES+ +GF+ Y +E A A+E NG +N K+ V Sbjct: 43 ITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEV 89 Score = 32.7 bits (73), Expect = 0.94 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAI 482 T +F++N+ + + F FG + VA D G+SKG+ +V ++ + A A Sbjct: 344 TGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAY 403 Query: 483 EKLNGMLMNDKKVYVGPFVRKQ 548 +L+ + + +++ P K+ Sbjct: 404 VELDKQIFQGRLLHILPGEEKK 425
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 57.0 bits (136), Expect = 5e-08 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L V +L S + L +VF + S+R+ ++ K G+A++ +++ DA A++ Sbjct: 416 LVVNNLSYSATEDSLREVFEK---ATSIRIPQNQGRAK--GFAFIEFSSAEDAKDAMDSC 470 Query: 231 NFTPINGRPIRIMYSNRDPSLR--KSGTAN---IFIKNLDKSIDNKALHDTFCVFGNILS 395 N T I GR IR+ +S + G+A +F++ L + + L + F ++ Sbjct: 471 NNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF---DGSVN 527 Query: 396 CKVATD-PAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKV 521 ++ TD G SKG+GFV + E A AA E + ++ KV Sbjct: 528 ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKV 570 Score = 52.8 bits (125), Expect = 9e-07 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 12/211 (5%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+V ++ S +L ++F + + +D +++ G AYV ++ +A +ALE Sbjct: 325 TLFVKNIPYSTTVEELQEIFENAKDI-RIPTGKDGSNK---GIAYVEFSNEDEANKALEE 380 Query: 228 LNFTPINGRPIRIMYSNRDP--SLRKSGTAN----IFIKNLDKSIDNKALHDTFCVFGNI 389 I GR I + ++ S K G + + NL S +L + VF Sbjct: 381 KQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLRE---VFEKA 437 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV------GPFVRKQE 551 S ++ + G +KG+ F+++ E A A++ N + + + + GP + Sbjct: 438 TSIRIPQNQ-GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGP-----Q 491 Query: 552 RDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 GS + ++V+ L+E TTE+ LKE F Sbjct: 492 GGGRGGSAQSKTLFVRGLSEDTTEETLKEAF 522
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 57.0 bits (136), Expect = 5e-08 Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 9/143 (6%) Frame = +3 Query: 84 DAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN---FTPINGR 254 ++ L + F+ G + + V RD +++S G A+V + + A RA+E ++ P + + Sbjct: 38 ESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97 Query: 255 PIRIMYSNRDPS-----LRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA 419 PI++ + S + IF+ + KS + L + F V+G+I C V + Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIKNKV 156 Query: 420 -GESKGYGFVQYERDEAAHAAIE 485 GESKG G+V+Y + A AIE Sbjct: 157 TGESKGLGYVRYLKPSQAAQAIE 179 Score = 33.9 bits (76), Expect = 0.42 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 L D FC FGN++ + + K G+V+Y +A+ AI L+G ++N ++ V Sbjct: 408 LEDIFCRFGNLIEVYLVS-----GKNVGYVKYADRMSANDAITTLHGKILNGVRLKV 459
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 57.0 bits (136), Expect = 5e-08 Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 13/186 (6%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPA 203 P S+++ +L+ S QL + F G V +V ++ S+G+ + + T Sbjct: 649 PTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKE 708 Query: 204 DAARALEMLNFTPINGRPIRIMYSNRDPSL--------RKSGTANIFIKNLDKSIDNKAL 359 A + + T ++G +++ S+R + +K I +KNL K + Sbjct: 709 QANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDV 768 Query: 360 HDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFV 539 + F FG + S +V ++G+ FV++ + A A+++L G+ + +++ V FV Sbjct: 769 FELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRL-VMEFV 827 Query: 540 RKQERD 557 + D Sbjct: 828 EQDPED 833 Score = 51.2 bits (121), Expect = 3e-06 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE------SKGYGF 443 D ++ T +IFIKNL+ S ++ L + F F + +V T P + S G+GF Sbjct: 642 DDDVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGF 701 Query: 444 VQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVK----FNNVYVKNLAE 611 +++ E A+A I + G +++ K+ + R+ + S K + VKNL Sbjct: 702 AEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPF 761 Query: 612 TTTEDDLKEIF 644 T D+ E+F Sbjct: 762 EATRKDVFELF 772 Score = 35.0 bits (79), Expect = 0.19 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = +3 Query: 273 SNRDPSLRK-SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFV 446 S + SL+K T +F++N+ + F +G + +A D G+SKG+ +V Sbjct: 317 SEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYV 376 Query: 447 QYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNL 605 ++ + A A +L+ + + +++ P K+ S K + +KNL Sbjct: 377 LFKNADNAATAFVELDKQIFQGRLLHILPADAKK-------SHKLDEFDLKNL 422
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/146 (24%), Positives = 69/146 (47%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L + + ++ +F + G V + +D K G+ + T A+ A+ L Sbjct: 78 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKV--EL 131 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + P+ G+ +R+ ++ SL ++NL + + N+ L + F VFG + V Sbjct: 132 DNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIV 183 Query: 411 DPAGESKGYGFVQYERDEAAHAAIEK 488 D G G G V++ AA A+++ Sbjct: 184 DDRGRPSGKGIVEFSGKPAARKALDR 209
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/146 (24%), Positives = 69/146 (47%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L + + ++ +F + G V + +D K G+ + T A+ A+ L Sbjct: 81 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKV--EL 134 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + P+ G+ +R+ ++ SL ++NL + + N+ L + F VFG + V Sbjct: 135 DNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIV 186 Query: 411 DPAGESKGYGFVQYERDEAAHAAIEK 488 D G G G V++ AA A+++ Sbjct: 187 DDRGRPSGKGIVEFSGKPAARKALDR 212
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 56.6 bits (135), Expect = 6e-08 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Frame = +3 Query: 105 FAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN---FTPINGRPIRIMYS 275 F+ G + + V RD +++S G A+V + + A RA+E ++ P + +PI++ + Sbjct: 45 FSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIA 104 Query: 276 NRDPS-----LRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGY 437 S + IF+ + KS + L + F V+G+I C + + GESKG Sbjct: 105 QSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163 Query: 438 GFVQYERDEAAHAAIE 485 G+V+Y + A AIE Sbjct: 164 GYVRYLKPSQAAQAIE 179 Score = 35.4 bits (80), Expect = 0.15 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 L D FC FGN++ + + K G+V+Y ++A+ AI L+G ++N ++ V Sbjct: 408 LEDIFCRFGNLIEVYLVS-----GKNVGYVKYADRKSANEAITTLHGKILNGVRLKV 459
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 56.6 bits (135), Expect = 6e-08 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 9/143 (6%) Frame = +3 Query: 84 DAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN---FTPINGR 254 ++ L + F+ G + + V RD +++S G A+V + + A RA+E ++ P + + Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97 Query: 255 PIRIMYSNRDPS-----LRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA 419 PI++ + S + IF+ + KS + L + F V+G+I C + + Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKV 156 Query: 420 -GESKGYGFVQYERDEAAHAAIE 485 GESKG G+V+Y + A AIE Sbjct: 157 TGESKGLGYVRYLKPSQAAQAIE 179 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Frame = +3 Query: 285 PSLRKSGTAN------IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFV 446 PS +K A +FI + L D FC FGN++ + + K G+ Sbjct: 378 PSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVS-----GKNVGYA 432 Query: 447 QYERDEAAHAAIEKLNGMLMNDKKVYV 527 +Y +A+ AI L+G ++N ++ V Sbjct: 433 KYADRISANDAIATLHGKILNGVRLKV 459
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/146 (24%), Positives = 69/146 (47%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L + + ++ +F + G V + +D K G+ + T A+ A+ L Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKV--EL 129 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + P+ G+ +R+ ++ SL ++NL + + N+ L + F VFG + V Sbjct: 130 DNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIV 181 Query: 411 DPAGESKGYGFVQYERDEAAHAAIEK 488 D G G G V++ AA A+++ Sbjct: 182 DDRGRPSGKGIVEFSGKPAARKALDR 207
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/146 (24%), Positives = 69/146 (47%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG+L + + ++ +F + G V + +D K G+ + T A+ A+ L Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKV--EL 129 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + P+ G+ +R+ ++ SL ++NL + + N+ L + F VFG + V Sbjct: 130 DNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIV 181 Query: 411 DPAGESKGYGFVQYERDEAAHAAIEK 488 D G G G V++ AA A+++ Sbjct: 182 DDRGRPSGKGIVEFSGKPAARKALDR 207
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 55.1 bits (131), Expect = 2e-07 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 10/162 (6%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPAD 206 +TS++V +L+ L D F + G + +V S+ S+G+ +V +++ Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 207 AARALEMLNFTPINGRPIRIMYSNRDPS-----LRKSGTANIFIKNLDKSIDNKALHDTF 371 A A + ++ ++G +++ SNR +K+ + I IKNL K + F Sbjct: 664 AEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLF 723 Query: 372 CVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 FG++ + +V ES+G+ F +Y + A A+ L G Sbjct: 724 GAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQG 765 Score = 50.1 bits (118), Expect = 6e-06 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKG------YGFVQYERD 461 + + ++F+KNL+ ++ L D F L +V P ++KG +GFV++ Sbjct: 602 TASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSK 661 Query: 462 EAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNN-VYVKNLAETTTEDDLKE 638 EAA A + ++G +++ K+ + R Q+ + + ++ + +KNL T+ D+++ Sbjct: 662 EAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQK 721 Query: 639 IF 644 +F Sbjct: 722 LF 723 Score = 38.1 bits (87), Expect = 0.022 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Frame = +3 Query: 237 TPINGRPIRIMYSNRDP---SLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 TP++ P + DP S+RK+G +F++NL + + F +G + + Sbjct: 282 TPVDEEP------SEDPTIVSIRKTG--RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLP 333 Query: 408 TDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQE 551 + G+ KG+ VQ+E E A AA E +G + + +++ P K++ Sbjct: 334 INTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKD 382
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 55.1 bits (131), Expect = 2e-07 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 24/192 (12%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+VG L S + QL ++F+Q+G V V + S+ G+ YV ++ D RAL+ Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK- 62 Query: 228 LNFTPINGRPIRIMYS-----NRDPSLRKSGT-------------------ANIFIKNLD 335 T G I + + N+ RK+ A + I+NL Sbjct: 63 -EITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLS 121 Query: 336 KSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK 515 L F +G +L + P G+ +G+ FVQ++ A A++ N + + Sbjct: 122 FKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGR 181 Query: 516 KVYVGPFVRKQE 551 V V V K + Sbjct: 182 TVAVDWAVAKDK 193 Score = 35.4 bits (80), Expect = 0.15 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 19/129 (14%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIE-- 485 +F+ L S + L + F G + C V T+ ++ +G+G+V + E A++ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 486 ------KLNGMLMNDKKVYVGPFVRKQERDNSPGSV----------KFNNVYVKNLAETT 617 K++ + K RK E SP K + ++NL+ Sbjct: 65 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKC 124 Query: 618 TEDDLKEIF 644 +EDDLK +F Sbjct: 125 SEDDLKAVF 133 Score = 33.1 bits (74), Expect = 0.72 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAI 482 +FI+NL + +AL + FG++ +V P E SKG F Q+ EAA + Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 382
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 54.7 bits (130), Expect = 2e-07 Identities = 33/115 (28%), Positives = 56/115 (48%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAA 479 +GT +FI NLD+ L F +G ++ C V K YGFV E ++ A Sbjct: 4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDA 56 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 I+ LNG +N+ + V + + N+P + ++V NL + T +++E+F Sbjct: 57 IQNLNGYTLNEFAIKV-EAAKSRRAPNTPTT----KIFVGNLTDKTRAPEVRELF 106 Score = 50.8 bits (120), Expect = 3e-06 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 2/161 (1%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++G+LD Q +L +F + G VV V ++ Y +V+ T A++ L Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNL 60 Query: 231 NFTPINGRPIRI--MYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 N +N I++ S R P+ + T IF+ NL + + F +G ++ C + Sbjct: 61 NGYTLNEFAIKVEAAKSRRAPN---TPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI 117 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 + YGFV + AI++LNG +++ + + V Sbjct: 118 V-------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151 Score = 37.0 bits (84), Expect = 0.050 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P T ++VG+L + ++ ++F + G VV + R+ Y +V+ + D A Sbjct: 84 PTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN--------YGFVHLDCVGDVQDA 135 Query: 219 LEMLNFTPINGRPIRIMYS 275 ++ LN ++G+P+++ S Sbjct: 136 IKELNGRVVDGQPLKVQVS 154
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 54.3 bits (129), Expect = 3e-07 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEK 488 NIF+ + KS+ L F +G ILS K+ D GE GYGF+ Y A I++ Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 LNG +N +++ V ++ER+ ++ ++ E +D+ + +F Sbjct: 256 LNGRTVNGSTLFINYHVERKERE---------RIHWDHVKENNNDDNFRCLF 298 Score = 49.3 bits (116), Expect = 1e-05 Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 64/257 (24%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +++VG + S+ +L +F++ G ++S+++ D T + GY +++Y + A+ ++ Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 228 LNFTPINGRPIRIMY-----------------SNRDPSLRKSGTANIFIKNLDK------ 338 LN +NG + I Y +N D + R N+ N +K Sbjct: 256 LNGRTVNGSTLFINYHVERKERERIHWDHVKENNNDDNFRCLFIGNLPYHNPEKVETLIT 315 Query: 339 -----SIDNKALHDTFCVF------------------------GNILSCKVATDPAGES- 428 + K L F F G++ S K + + G + Sbjct: 316 PKEVIEVIKKELSKKFPDFDIISYYFPKRSNTRSSSSVSFNEEGSVESNKSSNNTNGNAQ 375 Query: 429 -----KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ------ERDNSPGSV 575 KGYGF++ E A AAIE NG + + ++ V V+ + D P Sbjct: 376 DEDMLKGYGFIKLINHEQALAAIETFNGFMWHGNRLVVNKAVQHKVYNNHNSHDRHPSIS 435 Query: 576 KFNNVYVKNLAETTTED 626 N++ V A D Sbjct: 436 NHNDMEVLEFANNPMYD 452 Score = 43.1 bits (100), Expect = 7e-04 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 29/127 (22%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD--------------------PAGES 428 +N+++K++ S ++ L+D + FG I+S KV T P G S Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 429 KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ---------ERDNSPGSVKF 581 +GYGFV +E A AI +G ++ +V F +K+ ++ + S KF Sbjct: 600 RGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLSSSDDDDQSQTDNSSKF 659 Query: 582 NNVYVKN 602 N N Sbjct: 660 QNFQPHN 666 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 19/78 (24%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVC-------------------RDVTSRKS 167 ++LYV + +S D L+D + G ++SV+V D+ S Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 168 LGYAYVNYNTPADAARAL 221 GY +V++ +P DAA+A+ Sbjct: 600 RGYGFVSFESPLDAAKAI 617
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 53.9 bits (128), Expect = 4e-07 Identities = 37/184 (20%), Positives = 86/184 (46%), Gaps = 4/184 (2%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +++G L+ + L + F + G V +++ +D + +S G+ ++++ P+ ++ Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 220 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + ++G+ I P + T IF+ + + K + F +G I+ ++ Sbjct: 221 HI--LDGKVIDP--KRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML 276 Query: 411 DP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV---GPFVRKQERDNSPGSVK 578 D G+S+G+GFV Y+ +A + + D+K+ + P +Q+ N+ G+ Sbjct: 277 DKDTGQSRGFGFVTYDSADAVDRVCQN-KFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNG 335 Query: 579 FNNV 590 NN+ Sbjct: 336 GNNM 339
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 53.5 bits (127), Expect = 5e-07 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 2/170 (1%) Frame = +3 Query: 51 LYVGDLD-VSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++VG++D +L +FA G V+S V + +A+V+ A A RA+E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGAVRAIEA 54 Query: 228 LNFTPIN-GRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L+ + GR + + S P T IF+ N+ + ++ L F G ++ C V Sbjct: 55 LHGHELRPGRALVVEMSRPRPL----NTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 D Y FV E++ A AAI +LNG + K++ V + Q++ Sbjct: 111 VKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 153
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 53.5 bits (127), Expect = 5e-07 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 2/170 (1%) Frame = +3 Query: 51 LYVGDLD-VSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++VG++D +L +FA G V+S V + +A+V+ A A RA+E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGAVRAIEA 54 Query: 228 LNFTPIN-GRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L+ + GR + + S P T IF+ N+ + ++ L F G ++ C V Sbjct: 55 LHGHELRPGRALVVEMSRPRPL----NTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 D Y FV E++ A AAI +LNG + K++ V + Q++ Sbjct: 111 VKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 153
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 53.1 bits (126), Expect = 7e-07 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ TD G SKGYGFV + D +E + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE--S 99 Query: 495 GMLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 + + KK+ +GP +RKQ N P +F NV+ ET Sbjct: 100 QINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVWTNPNTET 150 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE- 224 +++VG +DV + + ++ FA+ G V V++ D T S GY +V++ D + +E Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTG-VSKGYGFVSFFNDVDVQKIVES 99 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRK 299 +NF +G+ +++ P++RK Sbjct: 100 QINF---HGKKLKL-----GPAIRK 116
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 53.1 bits (126), Expect = 7e-07 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ TD G SKGYGFV + D +E + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE--S 99 Query: 495 GMLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 + + KK+ +GP +RKQ N P +F NV+ ET Sbjct: 100 QINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVWTNPNTET 150 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE- 224 +++VG +DV + + ++ FA+ G V V++ D T S GY +V++ D + +E Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTG-VSKGYGFVSFFNDVDVQKIVES 99 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRK 299 +NF +G+ +++ P++RK Sbjct: 100 QINF---HGKKLKL-----GPAIRK 116
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 53.1 bits (126), Expect = 7e-07 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 2/170 (1%) Frame = +3 Query: 51 LYVGDLD-VSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++VG++D +L +FA G V+S V + +A+V+ A A RA+E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIEA 54 Query: 228 LNFTPIN-GRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L+ + GR + + S P T IF+ N+ + ++ L F G ++ C V Sbjct: 55 LHGHELRPGRALVVEMSRPRPL----NTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 D Y FV E++ A AAI +LNG + K++ V + Q++ Sbjct: 111 VKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 153
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 53.1 bits (126), Expect = 7e-07 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 2/170 (1%) Frame = +3 Query: 51 LYVGDLD-VSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++VG++D +L +FA G V+S V + +A+V+ A A RA+E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIEA 54 Query: 228 LNFTPIN-GRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 L+ + GR + + S P T IF+ N+ + ++ L F G ++ C V Sbjct: 55 LHGHELRPGRALVVEMSRPRPL----NTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQER 554 D Y FV E++ A AAI +LNG + K++ V + Q++ Sbjct: 111 VKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 153
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 10/158 (6%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVC-----RDVTSRKSLGYAYVNYNTPADAA 212 +LYV +L S D +L F + R+ R +R S+GY +V + + A Sbjct: 622 TLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAAR 681 Query: 213 RALEMLNFTPINGRPIRIMYSNRDP-----SLRKSGTANIFIKNLDKSIDNKALHDTFCV 377 A + ++ ++ + + ++ R+ S+ G+ I IKNL + + D F Sbjct: 682 TAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSS 741 Query: 378 FGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL 491 G + S ++ ++G+GFV+Y A +A+E L Sbjct: 742 QGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779 Score = 43.1 bits (100), Expect = 7e-04 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 11/123 (8%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP------AGESKGYGFVQYERDEAA 470 A +++KNL S ++ L F + ++ T P A S GYGFV ++ +AA Sbjct: 621 ATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAA 680 Query: 471 HAAIEKLNGMLMNDKKVYVGPFVRKQERD-----NSPGSVKFNNVYVKNLAETTTEDDLK 635 A + ++G ++ D V F R+ +S GS K + +KNL T+ D++ Sbjct: 681 RTAQKAMDGKVL-DAHTLVVTFARRNAEASTTSISSGGSTK---ILIKNLPFEATKRDIR 736 Query: 636 EIF 644 ++F Sbjct: 737 DLF 739
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 53.1 bits (126), Expect = 7e-07 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 17/190 (8%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTP-------ADA 209 L+VG LD S L F+Q G VV + +D T+ +S G+ +V + P A Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71 Query: 210 ARALEMLNF-----TPINGRPIRIM----YSNRDPSLRKSGTANIFIKNLDKSIDNKALH 362 L+ N TP +P R + ++P S + IF+ + + L Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELK 131 Query: 363 DTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFV 539 + F FG + + D + +G+GF+ +E +++ A+ +M KKV V Sbjct: 132 EYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG-KKVEVKRAE 190 Query: 540 RKQERDNSPG 569 + + +PG Sbjct: 191 PRDSKSQTPG 200
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 52.8 bits (125), Expect = 9e-07 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Frame = +3 Query: 270 YSNRDPSLRKSGTAN-----IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESK 431 +SN P ++ TA +FI L K L D F FG+++ C + DP G S+ Sbjct: 77 HSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSR 136 Query: 432 GYGFVQYERDEAAHAAIE----KLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVK 599 G+GFV ++ E+ ++ KLNG +++ K+ K + P ++V Sbjct: 137 GFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-------KAMKTKEP----VKKIFVG 185 Query: 600 NLAETTTEDDLKEIF 644 L+ T E+ ++E F Sbjct: 186 GLSPDTPEEKIREYF 200
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIE 485 AN+FI +L + ++ L F FGN++S KV D SK +GFV Y+ +A AAI+ Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 486 KLNGMLMNDKKVYVGPFVRKQERDNSP 566 +NG + K++ V +++ + D+ P Sbjct: 461 SMNGFQIGMKRLKVQ--LKRSKNDSKP 485 Score = 50.4 bits (119), Expect = 4e-06 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 5/156 (3%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR--KSLGYAYVNYNT---PAD 206 A ++VG + + + L ++F Q G V + + RD + +S G +V + T + Sbjct: 15 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALE 74 Query: 207 AARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGN 386 A AL + P PI++ ++ + + +FI + K + F FG Sbjct: 75 AQNALHNMKVLPGMHHPIQMKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 I C++ P G S+G FV + A AI+ ++ Sbjct: 134 IEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169 Score = 37.0 bits (84), Expect = 0.050 Identities = 19/73 (26%), Positives = 36/73 (49%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++ L D L +F G VVS +V D + S + +V+Y+ P A A++ Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461 Query: 228 LNFTPINGRPIRI 266 +N I + +++ Sbjct: 462 MNGFQIGMKRLKV 474
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIE 485 AN+FI +L + ++ L F FGN++S KV D SK +GFV Y+ +A AAI+ Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 486 KLNGMLMNDKKVYVGPFVRKQERDNSP 566 +NG + K++ V +++ + D+ P Sbjct: 461 SMNGFQIGMKRLKVQ--LKRSKNDSKP 485 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 5/156 (3%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR--KSLGYAYVNYNT---PAD 206 A ++VG + + + L ++F Q G V + V RD + +S G +V + T + Sbjct: 15 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALE 74 Query: 207 AARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGN 386 A AL + P PI++ ++ + + +FI + K + F FG Sbjct: 75 AQNALHNMKVLPGMHHPIQMKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 I C++ P G S+G FV + A AI+ ++ Sbjct: 134 IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169 Score = 37.0 bits (84), Expect = 0.050 Identities = 19/73 (26%), Positives = 36/73 (49%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++ L D L +F G VVS +V D + S + +V+Y+ P A A++ Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461 Query: 228 LNFTPINGRPIRI 266 +N I + +++ Sbjct: 462 MNGFQIGMKRLKV 474
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 52.4 bits (124), Expect = 1e-06 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ TD G SKGYGFV + D +E + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--S 99 Query: 495 GMLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 + + KK+ +GP +RKQ N P +F +V+ AET Sbjct: 100 QINFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNPPPPPQFQSVWSSPNAET 150 Score = 38.5 bits (88), Expect = 0.017 Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE- 224 +++VG +DV + + ++ FA+ G V V++ D T S GY +V++ D + +E Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTG-VSKGYGFVSFYNDVDVQKIVES 99 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIK 326 +NF +G+ +++ P++RK ++ Sbjct: 100 QINF---HGKKLKL-----GPAIRKQNLCTYHVQ 125
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.4 bits (124), Expect = 1e-06 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Frame = +3 Query: 270 YSNRDPSLRKSGTAN-----IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESK 431 +SN P ++ TA +FI L K L D F FG ++ C + DP G S+ Sbjct: 79 HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSR 138 Query: 432 GYGFVQYERDEAAHAAIE----KLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVK 599 G+GFV ++ E+ ++ KLNG +++ K+ K + P ++V Sbjct: 139 GFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-------KAMKTKEP----VKKIFVG 187 Query: 600 NLAETTTEDDLKEIF 644 L+ T E+ ++E F Sbjct: 188 GLSPDTPEEKIREYF 202
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 52.0 bits (123), Expect = 2e-06 Identities = 28/88 (31%), Positives = 42/88 (47%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P L+VG+L +V AQL +F G V V V D + +S G+ +V +T A+ A Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156 Query: 219 LEMLNFTPINGRPIRIMYSNRDPSLRKS 302 + N GRP+R+ P +S Sbjct: 157 AQQFNGYEFEGRPLRVNAGPPPPKREES 184 Score = 50.4 bits (119), Expect = 4e-06 Identities = 27/79 (34%), Positives = 43/79 (54%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYVG+L V D L ++F + G VV RV D S +S G+ +V ++ + +A+ L Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 231 NFTPINGRPIRIMYSNRDP 287 N ++GR IR+ + P Sbjct: 319 NGADLDGRQIRVSEAEARP 337 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +3 Query: 261 RIMYSNRDPSLRKSGTAN-IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKG 434 R Y + S SG+ N +++ NL +D+ AL + F G ++ +V D +G SKG Sbjct: 240 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 299 Query: 435 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 +GFV + AI LNG ++ +++ V Sbjct: 300 FGFVTLSSSQEVQKAINSLNGADLDGRQIRV 330 Score = 39.3 bits (90), Expect = 0.010 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKL 491 +F+ NL ++D+ L F GN+ +V D G S+G+GFV AA ++ Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 492 NGMLMNDK--KVYVGPFVRKQERDNSPG 569 NG + +V GP K+E S G Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREESFSRG 188
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 52.0 bits (123), Expect = 2e-06 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 19/205 (9%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTP-------ADA 209 L+VG LD S L F+Q G VV + +D T+ +S G+ +V + P A Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71 Query: 210 ARALEMLNF-----TPINGRPIRIMYS---NRDPSLRKSGTANIFIKNLDKSIDNKALHD 365 L+ N TP +P R + P S + IF+ + + L + Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131 Query: 366 TFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV---GP 533 F FG + + D + +G+GF+ +E +++ A+ +M KKV V P Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG-KKVEVKRAEP 190 Query: 534 FVRKQERDNSPGSVKFNNVYVKNLA 608 K + PG+ ++ + V N A Sbjct: 191 RDSKSQAPGQPGASQWGSRVVPNAA 215
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ TD G SKGYGFV + D +E + Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE--S 99 Query: 495 GMLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 + + KK+ +GP +RKQ N P +F NV+ ET Sbjct: 100 QINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVWSNPNTET 150 Score = 37.4 bits (85), Expect = 0.038 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE- 224 +++VG +DV + + ++ FA+ G V V++ D T S GY +V++ D + +E Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTG-VSKGYGFVSFFNDVDVQKIVES 99 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRK 299 +NF +G+ +++ P++RK Sbjct: 100 QINF---HGKKLKL-----GPAIRK 116
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 52.0 bits (123), Expect = 2e-06 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVA-TDPAGESKGYGFVQYERDEAAHAAIEKL 491 +++ +L + + L F FG +L +V+ + G SKGYGFV++E DE A E + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 492 NGMLMNDK--KVYVGPFVRKQER---DNSPGSVKFNNVYVKNLAETTTEDDLKEI 641 N LM ++ K +V P + E+ + G K V +T TEDD+K++ Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTRYNKTHTEDDVKKV 161
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L V +LD V DA + ++FA+ G + V D + R SLG A V++ ADA +A++ Sbjct: 77 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGR-SLGTADVHFERRADALKAMKQY 135 Query: 231 NFTPINGRP--IRIMYSNRDPSLRKSGTAN 314 P++GRP I+++ S DP R + + N Sbjct: 136 KGVPLDGRPMDIQLVASQIDPQRRPAQSGN 165 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEK 488 A + + NLD + + + + F FG + V D +G S G V +ER A A+++ Sbjct: 75 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134 Query: 489 LNGMLMNDK 515 G+ ++ + Sbjct: 135 YKGVPLDGR 143
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 51.2 bits (121), Expect = 3e-06 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L V +LD V DA + ++FA+ G + V D + R SLG A V++ ADA +A++ Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQY 165 Query: 231 NFTPINGRP--IRIMYSNRDPSLRKSGTAN 314 N P++GRP I+++ S D R + + N Sbjct: 166 NGVPLDGRPMNIQLVTSQIDAQRRPAQSVN 195 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/71 (25%), Positives = 36/71 (50%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 + + NLD + + + + F FG + V D +G S G V +ER A A+++ N Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 166 Query: 495 GMLMNDKKVYV 527 G+ ++ + + + Sbjct: 167 GVPLDGRPMNI 177
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 51.2 bits (121), Expect = 3e-06 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 45/184 (24%) Frame = +3 Query: 111 QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS----- 275 ++G V V + D KS G A V + +A E+LN ++GRP+++ Sbjct: 92 KVGEVTYVELLMDAEG-KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEH 150 Query: 276 -------------------------NRDPSLRKSGT---------------ANIFIKNLD 335 N PS+ + + +F+ NLD Sbjct: 151 ARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLD 210 Query: 336 KSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK 515 + K L + F + G ++ + D G+S+G G V +E+ A AI NG L+ D+ Sbjct: 211 YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDR 270 Query: 516 KVYV 527 ++V Sbjct: 271 PMHV 274 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IF++NL K L D F G++L + + G+SKG G V++E E A A +N Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 711 Query: 495 GMLMNDKKVYV 527 GM ++ +++ V Sbjct: 712 GMKLSGREIDV 722 Score = 30.4 bits (67), Expect = 4.7 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A ++V +L L D F + G V+ + + + KS G V + +P A RA Sbjct: 650 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERAC 707 Query: 222 EMLNFTPINGRPIRI 266 M+N ++GR I + Sbjct: 708 RMMNGMKLSGREIDV 722
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 50.8 bits (120), Expect = 3e-06 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTP-------ADA 209 L+VG LD S L F+Q G VV + +D T+ +S G+ +V + P A Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71 Query: 210 ARALEMLNF-----TPINGRPIRIMYS---NRDPSLRKSGTANIFIKNLDKSIDNKALHD 365 L+ N TP +P R + P S + IF+ + + L + Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131 Query: 366 TFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR 542 F FG + + D + +G+GF+ +E +++ A+ +M KKV V Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG-KKVEVKRAEP 190 Query: 543 KQERDNSPG 569 + ++ +PG Sbjct: 191 RDSKNQAPG 199
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 50.8 bits (120), Expect = 3e-06 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 45/184 (24%) Frame = +3 Query: 111 QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS----N 278 ++G V V + +D KS G V + +ALE +N ++GRP+ I N Sbjct: 114 KVGEVTYVELFKDAEG-KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGEN 172 Query: 279 RDPSLRKSGTA-----------------------------------------NIFIKNLD 335 +L+++GT+ IF+ NLD Sbjct: 173 ARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLD 232 Query: 336 KSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK 515 + K L + F + G + + D G+S+G G V +E+ A AI NG + D+ Sbjct: 233 FKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDR 292 Query: 516 KVYV 527 ++V Sbjct: 293 PMHV 296 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/71 (28%), Positives = 42/71 (59%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IF++NL + + L + F G+++ ++ + G+SKG G V++E E+A A +N Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAESAEKACRIMN 574 Query: 495 GMLMNDKKVYV 527 G+ ++ +++ V Sbjct: 575 GIKISGREIDV 585
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L V +LD V DA + ++FA+ G + V D + R SLG A V++ ADA +A++ Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQY 164 Query: 231 NFTPINGRP--IRIMYSNRDPSLRKSGTAN 314 N P++GRP I+++ S D R + + N Sbjct: 165 NGVPLDGRPMNIQLVTSQIDTQRRPAQSIN 194 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/71 (25%), Positives = 36/71 (50%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 + + NLD + + + + F FG + V D +G S G V +ER A A+++ N Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 165 Query: 495 GMLMNDKKVYV 527 G+ ++ + + + Sbjct: 166 GVPLDGRPMNI 176
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 50.4 bits (119), Expect = 4e-06 Identities = 41/150 (27%), Positives = 70/150 (46%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++G+LD SV + +L F + G + V + R + YA++ + A RA Sbjct: 11 NLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGG-AYAFLKFQNLDMAHRAKVA 69 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 ++ I PI+I Y +P T +++ L + AL F FG+I + Sbjct: 70 MSGRVIGRNPIKIGYGKANP------TTRLWVGGLGPNTSLAALAREFDRFGSI---RTI 120 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 G+S + ++QYE +AA AA K+ G Sbjct: 121 DHVKGDS--FAYIQYESLDAAQAACAKMRG 148 Score = 40.4 bits (93), Expect = 0.005 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 285 PSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDE 464 P + T N+FI NLD S+ L F +G I + G+ Y F++++ + Sbjct: 2 PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 61 Query: 465 AAHAAIEKLNGMLMNDKKVYVG 530 AH A ++G ++ + +G Sbjct: 62 MAHRAKVAMSGRVIGRNPIKIG 83
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 50.4 bits (119), Expect = 4e-06 Identities = 41/150 (27%), Positives = 70/150 (46%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++G+LD SV + +L F + G + V + R + YA++ + A RA Sbjct: 11 NLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGG-AYAFLKFQNLDMAHRAKVA 69 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 ++ I PI+I Y +P T +++ L + AL F FG+I + Sbjct: 70 MSGRVIGRNPIKIGYGKANP------TTRLWVGGLGPNTSLAALAREFDRFGSI---RTI 120 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 G+S + ++QYE +AA AA K+ G Sbjct: 121 DHVKGDS--FAYIQYESLDAAQAACAKMRG 148 Score = 40.4 bits (93), Expect = 0.005 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 285 PSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDE 464 P + T N+FI NLD S+ L F +G I + G+ Y F++++ + Sbjct: 2 PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 61 Query: 465 AAHAAIEKLNGMLMNDKKVYVG 530 AH A ++G ++ + +G Sbjct: 62 MAHRAKVAMSGRVIGRNPIKIG 83
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/75 (33%), Positives = 44/75 (58%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+VG+L+ V + LF++F Q G V+ V++ +D K +A+VN+ A+ + Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 228 LNFTPINGRPIRIMY 272 LN + GRPI+I + Sbjct: 70 LNGIKLYGRPIKIQF 84
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/78 (30%), Positives = 40/78 (51%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IF+ + L F +G + S K+ D AG SKGYGFV +E ++ A Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQRLQADGE 94 Query: 495 GMLMNDKKVYVGPFVRKQ 548 +++ D+K+ + P ++KQ Sbjct: 95 CVVLRDRKLNIAPAIKKQ 112
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/89 (31%), Positives = 49/89 (55%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +++VG+L+ V++ L+++F Q G + V +C+D K + +V + P + A+ + Sbjct: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKD-REGKPKSFGFVCFKHPESVSYAIAL 69 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTAN 314 LN + GRPI + Y R S R S AN Sbjct: 70 LNGIRLYGRPINVQY--RFGSSRSSEPAN 96 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/91 (24%), Positives = 44/91 (48%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ NL+ + + L++ F G + + D G+ K +GFV ++ E+ AI LN Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71 Query: 495 GMLMNDKKVYVGPFVRKQERDNSPGSVKFNN 587 G+ + + + V + R + P + F + Sbjct: 72 GIRLYGRPINV-QYRFGSSRSSEPANQSFES 101
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 50.4 bits (119), Expect = 4e-06 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 10/135 (7%) Frame = +3 Query: 270 YSNRDPSLRKSGTAN-----IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESK 431 +SN P ++ A +FI L K L D F FG ++ C + DP G S+ Sbjct: 79 HSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSR 138 Query: 432 GYGFVQYERDEAAHAAIE----KLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVK 599 G+GFV ++ E+ ++ KLNG +++ K+ K + P ++V Sbjct: 139 GFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-------KAMKTKEP----VKKIFVG 187 Query: 600 NLAETTTEDDLKEIF 644 L+ T E+ ++E F Sbjct: 188 GLSPDTPEEKIREYF 202
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG++ + QL D+F+++G VVS R+ D + K GY + Y A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 228 LNFTPINGRPIRI 266 LN +GR +R+ Sbjct: 77 LNGREFSGRALRV 89 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYE 455 RDP++ +S ++F+ N+ + L D F G+++S ++ D G+ KGYGF +Y+ Sbjct: 7 RDPAMDRS-LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65 Query: 456 RDEAAHAAIEKLNG 497 E A +A+ LNG Sbjct: 66 DQETALSAMRNLNG 79
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG++ + QL D+F+++G VVS R+ D + K GY + Y A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 228 LNFTPINGRPIRI 266 LN +GR +R+ Sbjct: 77 LNGREFSGRALRV 89 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYE 455 RDP++ +S ++F+ N+ + L D F G+++S ++ D G+ KGYGF +Y+ Sbjct: 7 RDPAMDRS-LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65 Query: 456 RDEAAHAAIEKLNG 497 E A +A+ LNG Sbjct: 66 DQETALSAMRNLNG 79
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 50.1 bits (118), Expect = 6e-06 Identities = 25/75 (33%), Positives = 44/75 (58%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+VG+L+ V + LF++F Q G V+ V++ +D K +A+VN+ A+ + Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 228 LNFTPINGRPIRIMY 272 LN + GRPI+I + Sbjct: 70 LNGIKLFGRPIKIQF 84
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 50.1 bits (118), Expect = 6e-06 Identities = 42/181 (23%), Positives = 84/181 (46%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T L+V + VQ+++L ++F G + V++ G+A+V + AA+A+E Sbjct: 125 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAAKAIE 176 Query: 225 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV 404 ++ +P+ ++YS + P+ R I +KNL + + L D N L Sbjct: 177 EVHGKSFANQPLEVVYS-KLPAKR----YRITMKNLPEGCSWQDLKD--LARENSLETTF 229 Query: 405 ATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFN 584 ++ + G G +++ +E A+E+LN + + V ERD++P ++ + Sbjct: 230 SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV-------ERDDNPPPIRRS 282 Query: 585 N 587 N Sbjct: 283 N 283
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 50.1 bits (118), Expect = 6e-06 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 17/166 (10%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPADA 209 ++L+V +L+ S + + +VF + G VS R+ ++ S+G+ +V++ T A A Sbjct: 597 STLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQA 656 Query: 210 ARALEMLNFTPINGRPIRIMYSNRDPSL----RKSGTAN--------IFIKNLDKSIDNK 353 AL ++ ++ + + SN+ R+ TA I IKNL K Sbjct: 657 QAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKK 716 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL 491 + F +G + S +V ++G+GF + A A++ L Sbjct: 717 DVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 762 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAI 482 ++ +F++NL L F FG I VA D SKG+ +VQY +AA A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 483 EKLNGMLMNDKKVYVGPFVRKQ 548 ++L+G + +++ P K+ Sbjct: 360 KELDGKHFQGRLMHILPATAKK 381
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 50.1 bits (118), Expect = 6e-06 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVAT--DPAGE--SKGYGFVQYERDEAAHAAI 482 +FIKNL+ S + L F G I SC ++ + AG S G+GFV+Y++ E A A+ Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 483 EKLNGMLMNDKKVYV-------GPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEI 641 ++L G ++ K+ V P + + P + + V+N+ + +++E+ Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIREL 843 Query: 642 F 644 F Sbjct: 844 F 844 Score = 38.9 bits (89), Expect = 0.013 Identities = 15/73 (20%), Positives = 35/73 (47%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEK 488 + + +KNL + + F FG + C + G+ + +GF+ ++ +E A AA+ Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61 Query: 489 LNGMLMNDKKVYV 527 + ++ ++ V Sbjct: 62 FHRSFIDTTRITV 74
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 50.1 bits (118), Expect = 6e-06 Identities = 23/72 (31%), Positives = 42/72 (58%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++G L+ + L VF + G +V V + +D + KS G+A+V + +PADA A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 231 NFTPINGRPIRI 266 N ++G+ I++ Sbjct: 70 NGKSLDGKAIKV 81 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 +FI L+ + KAL F +G I+ + D +S+G+ FV +E A A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 492 NGMLMNDKKVYV 527 NG ++ K + V Sbjct: 70 NGKSLDGKAIKV 81
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG++ + QL D+F+++G VVS R+ D + K GY + Y A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 228 LNFTPINGRPIRI 266 LN +GR +R+ Sbjct: 77 LNGREFSGRALRV 89 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYE 455 RDP++ +S ++F+ N+ + L D F G ++S ++ D G+ KGYGF +Y+ Sbjct: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65 Query: 456 RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLK 635 E A +A+ LNG + + + V ++ ++ V ET + +D Sbjct: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125 Query: 636 E 638 E Sbjct: 126 E 126
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L + +L D F + G + S+ V D + +S G+A++ + T +A + Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF-TNTEAIDKVSAA 116 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVAT 410 + IN + + DP K+ IF+ L I ++ + F FGNI+ ++ Sbjct: 117 DEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169 Query: 411 D-PAGESKGYGFVQYERDE 464 D + KG+ F+ ++ ++ Sbjct: 170 DKQKSQRKGFCFITFDSEQ 188
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 49.7 bits (117), Expect = 7e-06 Identities = 25/75 (33%), Positives = 44/75 (58%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+VG+L+ V + LF++F Q G V+ V++ +D K +A+VN+ A+ + Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKLKQFAFVNFKHEVSVPYAMNL 69 Query: 228 LNFTPINGRPIRIMY 272 LN + GRPI+I + Sbjct: 70 LNGIKLFGRPIKIQF 84
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 17/165 (10%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPADAA 212 +L++ +L+ S + L + F + G VS R+ + S+G+ + ++ T A A Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQ 652 Query: 213 RALEMLNFTPINGRPIRIMYSNRDPSL----RKSGTAN--------IFIKNLDKSIDNKA 356 AL ++N ++ + + S++ RK TA I IKNL K Sbjct: 653 AALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKD 712 Query: 357 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL 491 + F +G + S +V ++G+GF + A A++ L Sbjct: 713 VRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 757 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 14/127 (11%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE------SKGYGFVQYERDEA 467 TA +FIKNL+ S N++L + F +S ++ T P + S G+GF ++ Sbjct: 591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQ 650 Query: 468 AHAAIEKLNGMLMNDKKVYV--------GPFVRKQERDNSPGSVKFNNVYVKNLAETTTE 623 A AA+ +NG ++ + V R++E + + + +KNL T+ Sbjct: 651 AQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATK 710 Query: 624 DDLKEIF 644 D++ +F Sbjct: 711 KDVRSLF 717 Score = 43.1 bits (100), Expect = 7e-04 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAI 482 +A +F++NL L F FG I VA D SKG+ +VQY +AA A Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 483 EKLNGMLMNDKKVYVGPFVRKQ 548 L+G + + +++ P +K+ Sbjct: 354 RNLDGKIFQGRLLHILPASQKK 375 Score = 30.4 bits (67), Expect = 4.7 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIE 485 + +F+ L ++ N L F ++ V + GFV ++ EAA A+ Sbjct: 3 STRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVLP-----KRRIGFVGFKSSEAAQQAVS 57 Query: 486 KLNGMLMNDKKVYVG--------PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 N M K+ V P RK R P NN+ K +T + +E Sbjct: 58 YFNKTYMRMSKISVDIAKPIDAEPAHRKDSRTAQPDDALGNNLKRKRDGDTIKDSKTQE 116
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG++ + QL D+F+++G VVS R+ D + K GY + Y A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 228 LNFTPINGRPIRI 266 LN +GR +R+ Sbjct: 77 LNGREFSGRALRV 89 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYE 455 RDP++ +S ++F+ N+ + L D F G ++S ++ D G+ KGYGF +Y+ Sbjct: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65 Query: 456 RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLK 635 E A +A+ LNG + + + V ++ ++ V ET + +D Sbjct: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125 Query: 636 E 638 E Sbjct: 126 E 126
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG++ + QL D+F+++G VVS R+ D + K GY + Y A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 228 LNFTPINGRPIRI 266 LN +GR +R+ Sbjct: 77 LNGREFSGRALRV 89 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYE 455 RDP++ +S ++F+ N+ + L D F G ++S ++ D G+ KGYGF +Y+ Sbjct: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65 Query: 456 RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLK 635 E A +A+ LNG + + + V ++ ++ V ET + +D Sbjct: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125 Query: 636 E 638 E Sbjct: 126 E 126
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++VG++ + QL D+F+++G VVS R+ D + K GY + Y A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 228 LNFTPINGRPIRI 266 LN +GR +R+ Sbjct: 77 LNGREFSGRALRV 89 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYE 455 RDP++ +S ++F+ N+ + L D F G ++S ++ D G+ KGYGF +Y+ Sbjct: 7 RDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65 Query: 456 RDEAAHAAIEKLNG 497 E A +A+ LNG Sbjct: 66 DQETALSAMRNLNG 79
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 49.7 bits (117), Expect = 7e-06 Identities = 31/104 (29%), Positives = 49/104 (47%) Frame = +3 Query: 36 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 215 + +T LY+G L + L D F+ GV RV + + +S GY +VN+ + A Sbjct: 28 YMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANS 87 Query: 216 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSID 347 A+ +N +NG I + + PSL S LD+SI+ Sbjct: 88 AISAMNGQELNGFNISVNVAKDWPSLPLS---------LDESIE 122 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +3 Query: 258 IRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKG 434 + + S+ SLR T ++I L D +L D F F + +V T+ G S+G Sbjct: 15 VNVPVSSMLGSLRYMST-KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRG 73 Query: 435 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 YGFV + +++A++AI +NG +N + V Sbjct: 74 YGFVNFISEDSANSAISAMNGQELNGFNISV 104
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/150 (20%), Positives = 68/150 (45%), Gaps = 1/150 (0%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A ++VG L L D F + G VV + D + +S G+ ++ + + + L Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133 Query: 222 EMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + ++GR ++ + +++K IF+ L+ + + + F FG I + + Sbjct: 134 DQKEHR-LDGR---VIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189 Query: 402 VATDP-AGESKGYGFVQYERDEAAHAAIEK 488 + DP + +G+ F+ ++ ++ +EK Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Score = 44.3 bits (103), Expect = 3e-04 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Frame = +3 Query: 288 SLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDE 464 S + +F+ L K L D F FG ++ C + DP G S+G+GF+ ++ Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127 Query: 465 AAHAAIE----KLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDL 632 + ++ +L+G +++ KK ++D ++V L TE+ + Sbjct: 128 SVEKVLDQKEHRLDGRVIDPKKAMA------MKKD------PVKKIFVGGLNPEATEEKI 175 Query: 633 KEIF 644 +E F Sbjct: 176 REYF 179
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 49.3 bits (116), Expect = 1e-05 Identities = 27/83 (32%), Positives = 39/83 (46%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IFI L + + + C FG + + + D G SKGY F +Y AI LN Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 352 Query: 495 GMLMNDKKVYVGPFVRKQERDNS 563 GM + DK++ V Q+R N+ Sbjct: 353 GMQLGDKQLVVQLACANQQRHNT 375
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 49.3 bits (116), Expect = 1e-05 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 11/121 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVAT--DPAGE--SKGYGFVQYERDEAAHAAI 482 +FIKNL+ + L + F G + SC ++ + AG S G+GFV+Y + E A A+ Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 483 EKLNGMLMNDKKVYV-------GPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEI 641 ++L G +++ K+ V P V + P + + V+N+ +++E+ Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851 Query: 642 F 644 F Sbjct: 852 F 852 Score = 37.7 bits (86), Expect = 0.029 Identities = 15/73 (20%), Positives = 34/73 (46%) Frame = +3 Query: 309 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEK 488 + + +KNL + + F FG + C + G+ + +GF+ ++ +E A A + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 489 LNGMLMNDKKVYV 527 N ++ ++ V Sbjct: 62 FNKSFIDTSRITV 74 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 20/105 (19%) Frame = +3 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIE--------------------KLNGMLMN 509 ++ ++ + G GY FV + +E A++ G N Sbjct: 320 VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKN 379 Query: 510 DKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K + G + + E + + ++V+NL T+TE+DL+++F Sbjct: 380 TTKSWQGRILGENEEEED--LAESGRLFVRNLPYTSTEEDLEKLF 422
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG ILSC+V D +G+S Y F++++ EAA A K+ Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307 Query: 492 NGMLMNDKKVYV 527 +L++D++++V Sbjct: 308 QNVLVDDRRIWV 319
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 17/166 (10%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRK-----SLGYAYVNYNTPADA 209 +SL+V +L+ S L D F + G V +V +K S+G+ +V + T A Sbjct: 599 SSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQA 658 Query: 210 ARALEMLNFTPINGRPIRIMYSNR----------DPSLRKSGT--ANIFIKNLDKSIDNK 353 AL++++ ++ I + S+R + +K+ + +KNL + K Sbjct: 659 QAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKK 718 Query: 354 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL 491 + F +G +++ ++ S+G+ F ++ + A A L Sbjct: 719 EVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSL 764 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/82 (28%), Positives = 45/82 (54%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIE 485 T+ +F++NL ++ + + F FG ++ V D G SKG+ ++YE+ +A AA + Sbjct: 307 TSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQ 366 Query: 486 KLNGMLMNDKKVYVGPFVRKQE 551 +G + + V++ P K+E Sbjct: 367 -TDGTVFQGRIVHILPAAAKRE 387 Score = 47.0 bits (110), Expect = 5e-05 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 14/136 (10%) Frame = +3 Query: 279 RDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKV--ATDPAGE----SKGYG 440 RD + + T+++F++NL+ S ++ L D F + KV TDP S G+G Sbjct: 589 RDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFG 648 Query: 441 FVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR----KQERDNSPGSVKFNN----VYV 596 FV + + A AA++ ++G +++ K+ V R +ER + K N + V Sbjct: 649 FVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTKLVV 708 Query: 597 KNLAETTTEDDLKEIF 644 KNL T+ +++ +F Sbjct: 709 KNLPFEVTKKEVRTLF 724
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 48.9 bits (115), Expect = 1e-05 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Frame = +3 Query: 276 NRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQY 452 N LRK +FI L +++L + F +G + C V DP + S+G+GFV Y Sbjct: 8 NEPEQLRK-----LFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62 Query: 453 ----ERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTT 620 E D A A K++G ++ K+ V +++ + ++V + E T Sbjct: 63 LSTDEVDAAMTARPHKVDGRVVEPKRA-----VSREDSSRPGAHLTVKKIFVGGIKEDTE 117 Query: 621 EDDLKEIF 644 ED L+E F Sbjct: 118 EDHLREYF 125
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Frame = +3 Query: 282 DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYER 458 D SL IF+ L + + + + + FG I V DP + S+G+GFV + Sbjct: 14 DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSG 73 Query: 459 DEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 AA+ K +++ K V V + +++ S +V +YV + E TED L E Sbjct: 74 KTEVDAAM-KQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTE 132 Query: 639 IF 644 F Sbjct: 133 YF 134
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ LH F FG ILSC+V D G+S Y F+++E + A K+ Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 492 NGMLMNDKKVYV 527 G+L++D +++V Sbjct: 310 QGVLIDDHRIHV 321
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 48.9 bits (115), Expect = 1e-05 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 45/184 (24%) Frame = +3 Query: 111 QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIM------Y 272 ++G V V + D KS G A V + +A E+LN ++GRP+++ + Sbjct: 93 KVGEVTYVELLMDAEG-KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEH 151 Query: 273 SNR------------------------DPSLRKSGT---------------ANIFIKNLD 335 + R PS+ + + +F+ NLD Sbjct: 152 ARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLD 211 Query: 336 KSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK 515 + K L + F + G ++ + D G+S+G G V +E+ A AI NG L+ D+ Sbjct: 212 YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 271 Query: 516 KVYV 527 ++V Sbjct: 272 PMHV 275 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IF++NL K L D F G++L + + G+SKG G V++E E A A +N Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 712 Query: 495 GMLMNDKKVYV 527 GM ++ +++ V Sbjct: 713 GMKLSGREIDV 723 Score = 30.4 bits (67), Expect = 4.7 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 221 A ++V +L L D F + G V+ + + + KS G V + +P A RA Sbjct: 651 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERAC 708 Query: 222 EMLNFTPINGRPIRI 266 M+N ++GR I + Sbjct: 709 RMMNGMKLSGREIDV 723
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 97 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 98 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 150
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYVG L V D L F G + +++ D + K G+A+V + DAA A++ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 231 NFTPINGRPIRI 266 N + + GR IR+ Sbjct: 68 NESELFGRTIRV 79 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKL 491 +++ L + +D+K LH F FG+I ++ D E +G+ FV++E E A AAI+ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 492 NGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 N + + + V + ++ S V ++ ++K + T E++ +E Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEE 116
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 LYVG L V D L F G + +++ D + K G+A+V + DAA A++ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 231 NFTPINGRPIRI 266 N + + GR IR+ Sbjct: 68 NESELFGRTIRV 79 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKL 491 +++ L + +D+K LH F FG+I ++ D E +G+ FV++E E A AAI+ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 492 NGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKE 638 N + + + V + ++ S V ++ ++K + T E++ +E Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEE 116
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 97 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 98 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 150
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 427 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 428 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 480 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 262 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 263 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 315 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 97 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 98 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 150
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 262 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 263 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 315 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + F +G++ K+ T+ G SKGYGFV + D ++K+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVND----VDVQKIV 97 Query: 495 G--MLMNDKKVYVGPFVRKQER-----------DNSPGSVKFNNVYVKNLAET 614 G + + KK+ +GP +RKQ+ N P +F NV+ ET Sbjct: 98 GSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTET 150
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG ILSC+V D G+S Y F++YE + AA K+ Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKM 312 Query: 492 NGMLMNDKKVYV 527 G+L++D++++V Sbjct: 313 QGVLIDDRRIHV 324
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/83 (32%), Positives = 38/83 (45%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IFI L + + + C FG + + + D G SKGY F +Y AI LN Sbjct: 284 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 343 Query: 495 GMLMNDKKVYVGPFVRKQERDNS 563 GM + DK++ V Q R N+ Sbjct: 344 GMQLGDKQLVVQLACANQTRHNT 366
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S++V +L L ++F +G VV + + +G V + A+ Sbjct: 123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHHRGMGT--VEFTKNESVQDAISK 180 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTAN-----------IFIKNLDKSIDNKALHDTFC 374 + R + + N P K + +FI NL S++ ++L D F Sbjct: 181 FDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFK 240 Query: 375 VFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK--KVYVGPFVRKQ 548 G++L V D G S+G+G V Y ++ AI+ NGM + + +V G F +++ Sbjct: 241 ECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRK 300 Query: 549 ERD 557 D Sbjct: 301 NND 303 Score = 35.0 bits (79), Expect = 0.19 Identities = 45/191 (23%), Positives = 69/191 (36%), Gaps = 43/191 (22%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 +++ +L S+ L D+F + G V+ V D S G+ V Y T + RA++ Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGF-SRGFGSVIYPTEDEMIRAIDTF 279 Query: 231 NFTPINGRPIRIM------------YSNR----------DPSLRKS-------------- 302 N + GR + + Y+ R +P L + Sbjct: 280 NGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQDAAVHIDETAAKFTE 339 Query: 303 -----GTANIFI--KNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERD 461 G N FI NL S L D F G I + ++ G+ G V+YE Sbjct: 340 GVNPGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENL 399 Query: 462 EAAHAAIEKLN 494 A I+KLN Sbjct: 400 VDADFCIQKLN 410
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 48.1 bits (113), Expect = 2e-05 Identities = 43/184 (23%), Positives = 69/184 (37%), Gaps = 45/184 (24%) Frame = +3 Query: 111 QIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPS 290 ++G V V + +D KS G V + +ALE +N ++GRP+ I + Sbjct: 123 KVGEVTYVELFKDAEG-KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGEN 181 Query: 291 LRK------------------SGTAN---------------------------IFIKNLD 335 R+ SG N IF+ NLD Sbjct: 182 ARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLD 241 Query: 336 KSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK 515 + K L + F + G + + D G+S+G G V +E+ A AI NG + D+ Sbjct: 242 FKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDR 301 Query: 516 KVYV 527 ++V Sbjct: 302 PMHV 305 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/71 (26%), Positives = 42/71 (59%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 IF++NL + + L + F G+++ ++ + G+SKG G V+++ E+A A +N Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFDSPESAEKACRIMN 583 Query: 495 GMLMNDKKVYV 527 G+ ++ +++ V Sbjct: 584 GIKISGREIDV 594
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 48.1 bits (113), Expect = 2e-05 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 5/205 (2%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T ++VG + + + +L +F + G + +R+ D + + GYA+V + T A A++ Sbjct: 162 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 221 Query: 225 MLNFTPI-NGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + N I +G+ I + S +F+ ++ KS + + + F L+ Sbjct: 222 LYNNHEIRSGKHIGVCIS--------VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDV 273 Query: 402 V---ATDPAGESKGYGFVQYE-RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 + D +++G+ F++YE AA A ++G + V + E + Sbjct: 274 ILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEV 333 Query: 570 SVKFNNVYVKNLAETTTEDDLKEIF 644 K ++V+NLA T TE+ L++ F Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAF 358 Score = 40.4 bits (93), Expect = 0.005 Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 10/191 (5%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIG-GVVSVRVCRDVTSRK-SLGYAYVNYNTPADAARALE 224 L+VG + S Q+ + F+++ G+ V + +K + G+ ++ Y AA+A Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304 Query: 225 MLNFTPIN--GRPIRIMYSN--RDPSLRKSGTANI-FIKNLDKSIDNKALHDTFCVFGNI 389 L + G + +++ DP + F++NL ++ + L F FG + Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL 364 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLM---NDKKVYVGPFVRKQERDN 560 K + K Y F+ ++ + A A+E++NG + N + V+ P +K++ Sbjct: 365 ERVK-------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417 Query: 561 SPGSVKFNNVY 593 + N +Y Sbjct: 418 AQRQAAKNQMY 428
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++G L+ + L VF + G +V + + +D + KS G+A+V + +PADA + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 231 NFTPINGRPIRI 266 N ++G+ I++ Sbjct: 70 NGKSLDGKAIKV 81 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 +FI L+ + KAL F +G I+ + D +S+G+ FV +E A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 492 NGMLMNDKKVYV 527 NG ++ K + V Sbjct: 70 NGKSLDGKAIKV 81
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/85 (25%), Positives = 46/85 (54%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L+ + + L D F+ G + V V +D +++S G+ ++ + P A+ A+ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ ++ + + G Sbjct: 68 NGESLDGRQIRVDHAGKSARGSRGG 92 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L+ + D +AL D F FG I V D + S+G+GF+ + E A Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMRAMNGESLDGRQIRV 79
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/85 (25%), Positives = 46/85 (54%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L+ + + L D F+ G + V V +D +++S G+ ++ + P A+ A+ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ ++ + + G Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGG 92 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L+ + D +AL D F FG I V D + S+G+GF+ + E A Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMRAMNGESLDGRQIRV 79
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + N++L + F +G IL KV TD G S+G+GFV + + + AIE +N Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 71 GKELDGRNITV 81
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + +N+ L F FG ++ KV TD G S+G+GFV + +++ AIE +N Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 71 GKELDGRNITV 81
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 47.8 bits (112), Expect = 3e-05 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 5/205 (2%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T ++VG + + + +L +F + G + +R+ D + + GYA+V + T A A++ Sbjct: 162 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 221 Query: 225 MLNFTPI-NGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + N I +G+ I + S +F+ ++ KS + + + F L+ Sbjct: 222 LYNNHEIRSGKHIGVCIS--------VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDV 273 Query: 402 V---ATDPAGESKGYGFVQYE-RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 + D +++G+ F++YE AA A ++G + V + E + Sbjct: 274 ILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEV 333 Query: 570 SVKFNNVYVKNLAETTTEDDLKEIF 644 K ++V+NLA T TE+ L++ F Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSF 358 Score = 40.8 bits (94), Expect = 0.003 Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 10/191 (5%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIG-GVVSVRVCRDVTSRK-SLGYAYVNYNTPADAARALE 224 L+VG + S Q+ + F+++ G+ V + +K + G+ ++ Y AA+A Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304 Query: 225 MLNFTPIN--GRPIRIMYSN--RDPSLRKSGTANI-FIKNLDKSIDNKALHDTFCVFGNI 389 L + G + +++ DP + F++NL ++ + L +F FG + Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKL 364 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLM---NDKKVYVGPFVRKQERDN 560 K + K Y F+ ++ + A A+E++NG + N + V+ P +K++ Sbjct: 365 ERVK-------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417 Query: 561 SPGSVKFNNVY 593 + N +Y Sbjct: 418 AQRQAAKNQMY 428
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/72 (30%), Positives = 41/72 (56%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++G L+ + L VF + G +V + + +D + KS G+A+V +PADA A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 231 NFTPINGRPIRI 266 N ++G+ I++ Sbjct: 70 NGKSLDGKAIKV 81 Score = 34.7 bits (78), Expect = 0.25 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 +FI L+ + KAL F +G I+ + D +S+G+ FV E A A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 492 NGMLMNDKKVYV----GPFVRKQERDNSP 566 NG ++ K + V PF R P Sbjct: 70 NGKSLDGKAIKVEQATKPFFESGRRGPPP 98
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/85 (30%), Positives = 48/85 (56%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++G L+ + L VF + G + V + +D TS KS G+A++ + PADA A + + Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKDM 68 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++G+ I++ + + PS + G Sbjct: 69 NGKSLHGKAIKVEQAKK-PSFQSGG 92 Score = 36.2 bits (82), Expect = 0.085 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +FI L++ + K L F G I + D +S+G+ F+ +E A A + +N Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 495 GMLMNDKKVYV 527 G ++ K + V Sbjct: 70 GKSLHGKAIKV 80
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 47.8 bits (112), Expect = 3e-05 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 5/205 (2%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T ++VG + + + +L +F + G + +R+ D + + GYA+V + T A A++ Sbjct: 72 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 131 Query: 225 MLNFTPI-NGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + N I +G+ I + S +F+ ++ KS + + + F L+ Sbjct: 132 LYNNHEIRSGKHIGVCIS--------VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDV 183 Query: 402 V---ATDPAGESKGYGFVQYE-RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPG 569 + D +++G+ F++YE AA A ++G + V + E + Sbjct: 184 ILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEV 243 Query: 570 SVKFNNVYVKNLAETTTEDDLKEIF 644 K ++V+NLA T TE+ L++ F Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKSF 268 Score = 40.8 bits (94), Expect = 0.003 Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 10/191 (5%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIG-GVVSVRVCRDVTSRK-SLGYAYVNYNTPADAARALE 224 L+VG + S Q+ + F+++ G+ V + +K + G+ ++ Y AA+A Sbjct: 155 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 214 Query: 225 MLNFTPIN--GRPIRIMYSN--RDPSLRKSGTANI-FIKNLDKSIDNKALHDTFCVFGNI 389 L + G + +++ DP + F++NL ++ + L +F FG + Sbjct: 215 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKL 274 Query: 390 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLM---NDKKVYVGPFVRKQERDN 560 K + K Y F+ ++ + A A+E++NG + N + V+ P +K++ Sbjct: 275 ERVK-------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 327 Query: 561 SPGSVKFNNVY 593 + N +Y Sbjct: 328 AQRQAAKNQMY 338
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + D++AL F +G+++ K+ D G S+G+GFV ++ ++A AIE +N Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 71 GQDLDGRSITV 81 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 54 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN 233 +VG L + D L FAQ G V+ ++ D + +S G+ +V + A+E +N Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 234 FTPINGRPIRI 266 ++GR I + Sbjct: 71 GQDLDGRSITV 81
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/73 (30%), Positives = 41/73 (56%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 ++YVG L V + L + F G + +++ D S++ G+A++ Y DAA A++ Sbjct: 7 TIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDN 66 Query: 228 LNFTPINGRPIRI 266 +N + + GR IR+ Sbjct: 67 MNDSELCGRTIRV 79 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGES-KGYGFVQYERDEAAHAAIEKL 491 I++ L + + L++ F FG+I ++ D + +G+ F++YE+ E A AAI+ + Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 492 N 494 N Sbjct: 68 N 68
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/86 (25%), Positives = 41/86 (47%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D +D + + F +G++ K+ T G KGYGFV + D +++ Sbjct: 49 LFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQTIVDQ-- 106 Query: 495 GMLMNDKKVYVGPFVRKQERDNSPGS 572 + KK+ +GP + K+ S S Sbjct: 107 PISFKGKKLKLGPAIMKERSSRSVSS 132
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L + L VF++ G + V V +D +++S G+ +V + DA A+ + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ + + R G Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG 92 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L + ++L F +G I V D + S+G+GFV +E + A Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L + L VF++ G + V V +D +++S G+ +V + DA A+ + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ + + R G Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG 92 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L + ++L F +G I V D + S+G+GFV +E + A Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + D++AL F +G +L K+ D G S+G+GFV ++ +++ AIE +N Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 71 GQDLDGRSITV 81 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/71 (26%), Positives = 35/71 (49%) Frame = +3 Query: 54 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN 233 +VG L + D L F+Q G V+ ++ D + +S G+ +V + A+E +N Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 234 FTPINGRPIRI 266 ++GR I + Sbjct: 71 GQDLDGRSITV 81
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + +++ L TF FG+++ K+ D +G S+G+GFV ++ ++A AIE++N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 69 GKELDGRVITV 79 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 54 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN 233 +VG L + D L F+Q G V+ ++ D S +S G+ +V + A+E +N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 234 FTPINGRPIRI 266 ++GR I + Sbjct: 69 GKELDGRVITV 79
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/78 (28%), Positives = 43/78 (55%) Frame = +3 Query: 33 SFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAA 212 S + ++YVG+L + QL+++F++ G + + + D G+ ++ Y TP +A Sbjct: 42 SMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEAL 101 Query: 213 RALEMLNFTPINGRPIRI 266 AL+ L+ T ++ R I I Sbjct: 102 AALKYLSKTKLDDREITI 119
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG I SC+V D GES Y F+++E++E A K+ Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 492 NGMLMNDKKVYV 527 + +L++D++++V Sbjct: 302 DNVLIDDRRIHV 313
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG I SC+V D GES Y F+++E++E A K+ Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 492 NGMLMNDKKVYV 527 + +L++D++++V Sbjct: 302 DNVLIDDRRIHV 313
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L + L VF++ G + V V +D +++S G+ +V + DA A+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ + + R G Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG 92 Score = 37.0 bits (84), Expect = 0.050 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L + +AL F +G I V D + S+G+GFV +E + A Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L + L VF++ G + V V +D +++S G+ +V + DA A+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ + + R G Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG 92 Score = 37.0 bits (84), Expect = 0.050 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L + +AL F +G I V D + S+G+GFV +E + A Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L+VG L + L VF++ G + V V +D +++S G+ +V + DA A+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ + + R G Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRG 92 Score = 37.0 bits (84), Expect = 0.050 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHA 476 S +F+ L + +AL F +G I V D + S+G+GFV +E + A Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 10/110 (9%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ +D ++ + F +G + K+ TD G SKGYGFV + + +E + Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE--S 95 Query: 495 GMLMNDKKVYVGPFVRKQERDNS----------PGSVKFNNVYVKNLAET 614 + ++ K++ +GP +RKQ+ S P + +F++V+ ET Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNPPAPQFHSVWTNQNTET 145
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/106 (21%), Positives = 53/106 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VG++ V + Q+ ++F Q+G V + ++ D + GY + + A A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDT 368 N + + R IR+ + + DP +S + + D+ ++ + H++ Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYE---YTERTDRYMEQQNAHES 111 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ N+ + + + + F G + + K+ DP G KGYGF ++ E A+ KL Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 492 NGMLMNDKKVYV 527 N + +K+ V Sbjct: 69 NNSELGPRKIRV 80
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG ILSC+V D G+S Y F+++E ++ A K+ Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314 Query: 492 NGMLMNDKKVYV 527 + +L++D++++V Sbjct: 315 DSVLIDDRRIHV 326
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/79 (32%), Positives = 41/79 (51%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P L V L + + L +VF++ G + V + D SR+S G+A+V + DA A Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175 Query: 219 LEMLNFTPINGRPIRIMYS 275 E N ++GR IR+ +S Sbjct: 176 KERANGMELDGRRIRVDFS 194 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F +G I + D S+G+ FV +E + A A E+ NGM ++ +++ V Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 534 FVRKQERDNSPG 569 + K+ +PG Sbjct: 194 SITKRPHTPTPG 205
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/79 (32%), Positives = 41/79 (51%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P L V L + + L +VF++ G + V + D SR+S G+A+V + DA A Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175 Query: 219 LEMLNFTPINGRPIRIMYS 275 E N ++GR IR+ +S Sbjct: 176 KERANGMELDGRRIRVDFS 194 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F +G I + D S+G+ FV +E + A A E+ NGM ++ +++ V Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 534 FVRKQERDNSPG 569 + K+ +PG Sbjct: 194 SITKRPHTPTPG 205
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/79 (32%), Positives = 41/79 (51%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P L V L + + L +VF++ G + V + D SR+S G+A+V + DA A Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175 Query: 219 LEMLNFTPINGRPIRIMYS 275 E N ++GR IR+ +S Sbjct: 176 KERANGMELDGRRIRVDFS 194 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F +G I + D S+G+ FV +E + A A E+ NGM ++ +++ V Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 534 FVRKQERDNSPG 569 + K+ +PG Sbjct: 194 SITKRPHTPTPG 205
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 45.4 bits (106), Expect = 1e-04 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 4/163 (2%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L V +L S+ AQ ++ G + + + S GY + Y AARA L Sbjct: 134 LCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDL 193 Query: 231 NFTPINGRPIRIMYSNRD---PSLRKSGTANIFIKNLDKSI-DNKALHDTFCVFGNILSC 398 P+ R + + +++ P+L S + + +L D AL V C Sbjct: 194 LGKPLGPRTLYVHWTDAGQLTPALLHSRC--LCVDHLPPGFSDVDALRRALSVVYTPTFC 251 Query: 399 KVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 ++A G+ KG+ ++YE E A AA E+ +G + D + V Sbjct: 252 QLACGQDGQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRV 294
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 45.4 bits (106), Expect = 1e-04 Identities = 38/150 (25%), Positives = 68/150 (45%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L++G+LD++V ++ L F + G + V + R + S Y ++ + + RA Sbjct: 375 TLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTST-YGFLKFENLDMSHRAKLA 433 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 407 ++ I PI+I Y P+ R +++ L + AL F FG I Sbjct: 434 MSGKIIIRNPIKIGYGKATPTTR------LWVGGLGPWVPLAALAREFDRFGTI-----R 482 Query: 408 TDPAGESKGYGFVQYERDEAAHAAIEKLNG 497 T + + ++QYE +AAHAA + G Sbjct: 483 TIDYRKGDSWAYIQYESLDAAHAAWTHMRG 512 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/72 (25%), Positives = 36/72 (50%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 494 +F+ NLD ++ L F FG I + G++ YGF+++E + +H A ++ Sbjct: 376 LFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMS 435 Query: 495 GMLMNDKKVYVG 530 G ++ + +G Sbjct: 436 GKIIIRNPIKIG 447
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG ILSC+V D G+S Y F+++E + A K+ Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 492 NGMLMNDKKVYV 527 G+L++D +++V Sbjct: 310 QGVLIDDHRIHV 321
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG ILSC+V D G+S Y F+++E + A K+ Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 492 NGMLMNDKKVYV 527 G+L++D +++V Sbjct: 310 QGVLIDDHRIHV 321
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VG L + + + VF+Q G +V++ + RD + KS G+ ++ Y A++ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 231 NFTPINGRPIRI 266 N I GR IR+ Sbjct: 98 NGIKIKGRTIRV 109 Score = 33.5 bits (75), Expect = 0.55 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAI 482 +A IF+ L + + F +G I++ + D G+SKG+ F+ YE + A+ Sbjct: 35 SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94 Query: 483 EKLNGMLMNDKKVYV 527 + NG+ + + + V Sbjct: 95 DNFNGIKIKGRTIRV 109
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER----DEAAHAA 479 +FI LD +++L F +G I+ V DP S+G+GF+ Y R D+A +A Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNAR 78 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G ++ K+ V + E ++V + E E+DL++ F Sbjct: 79 PHKVDGRVVEPKRA-----VPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYF 128 Score = 36.6 bits (83), Expect = 0.065 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYN 194 L+VG + +++ L D F Q G VVS + D +RK G+A+V ++ Sbjct: 110 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFD 157
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 45.1 bits (105), Expect = 2e-04 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYER----DEAAHAA 479 +FI LD + L F +GNI+ V DP S+G+GF+ Y + D A +A Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNAR 85 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G + K+ V +QE D+ ++V L + E+ L+E F Sbjct: 86 PHKIDGRTVEPKRA-----VPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYF 135 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYN 194 L+VG L + L + F G +VSV + D + K G+A++ ++ Sbjct: 117 LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFD 164
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/85 (25%), Positives = 43/85 (50%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 L++G L+ + L F + G + V V +D +++S G+ +V + DA A+ + Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 231 NFTPINGRPIRIMYSNRDPSLRKSG 305 N ++GR IR+ + + R+ G Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERRGG 91 Score = 35.4 bits (80), Expect = 0.15 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +3 Query: 300 SGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHA 476 S +FI L+ + L F +G I V D S+G+GFV +E + A Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61 Query: 477 AIEKLNGMLMNDKKVYV 527 A+ +NG ++ +++ V Sbjct: 62 AMMAMNGKSVDGRQIRV 78
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Frame = +3 Query: 306 TANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE------SKGYGFVQYERDEA 467 TA I++KNL+ S + F LS + P + S G+GFV+++ + Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677 Query: 468 AHAAIEKLNGMLMNDKKVYV-----GPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDL 632 A AA+ +NG +++ K+ + G + R K + +KNL T+ D+ Sbjct: 678 AVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDV 737 Query: 633 KEI 641 + + Sbjct: 738 QSL 740
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P T L V L + + L +VF++ G + V V D + +S G+A+V + D+ A Sbjct: 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176 Query: 219 LEMLNFTPINGRPIRIMYS 275 +E N ++GR IR+ YS Sbjct: 177 MERANGMELDGRRIRVDYS 195 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F +G + V D G S+G+ FV +ER + + A+E+ NGM ++ +++ V Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 534 FVRKQERDNSPG 569 + K+ +PG Sbjct: 195 SITKRAHTPTPG 206
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P T L V L + + L +VF++ G + V V D + +S G+A+V + D+ A Sbjct: 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174 Query: 219 LEMLNFTPINGRPIRIMYS 275 +E N ++GR IR+ YS Sbjct: 175 MERANGMELDGRRIRVDYS 193 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 357 LHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 533 L + F +G + V D G S+G+ FV +ER + + A+E+ NGM ++ +++ V Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 534 FVRKQERDNSPG 569 + K+ +PG Sbjct: 193 SITKRAHTPTPG 204
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ ++ L F FG I+SC+V D G+S Y F++++ E+ A K+ Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 492 NGMLMNDKKVYV 527 +L++D +++V Sbjct: 306 QNVLIDDSRIHV 317
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/85 (28%), Positives = 46/85 (54%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 +L+V L S + A L +F++ G V+ +V + S + Y +V +T +A + + Sbjct: 452 NLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISH 511 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKS 302 L+ T ++GR I + + +PS +KS Sbjct: 512 LHRTELHGRMISVEKAKNEPSEKKS 536
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQY----ERDEAAHAA 479 +FI L +++L F +G + C V DP S+G+GFV Y E D A +A Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G ++ K+ V +++ + ++V + E T E L++ F Sbjct: 75 PHKVDGRVVEPKRA-----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 124 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VG + ++ L D F Q G + + + D S K G+A+V ++ D+ + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQ 164 Query: 231 NFTPING 251 + +NG Sbjct: 165 KYHTVNG 171
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + D ++L F FG ++ K+ D G S+G+GFV ++ +++ AIE +N Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 71 GQDLDGRSITV 81 Score = 36.6 bits (83), Expect = 0.065 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = +3 Query: 54 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN 233 +VG L + + L F+Q G +V ++ D + +S G+ +V + A+E +N Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 234 FTPINGRPIRI 266 ++GR I + Sbjct: 71 GQDLDGRSITV 81
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/86 (30%), Positives = 44/86 (51%) Frame = +3 Query: 48 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 227 S+YVG+L V +A L VFA+ G V V++ D + + G+ +V A+ A+E Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 228 LNFTPINGRPIRIMYSNRDPSLRKSG 305 L+ GR +++ + P +SG Sbjct: 62 LDGAEWMGRDLKV--NKAKPRENRSG 85 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = +3 Query: 312 NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEK 488 +I++ NL + L F +G++ ++ TD G +G+GFV+ E D AAIE Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 489 LNGMLMNDKKVYVGPFVRKQERDNSPGSVKF 581 L+G + + V + + R+N G F Sbjct: 62 LDGAEWMGRDLKVN---KAKPRENRSGGGSF 89
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKL 491 +F+ L+ + L F FG ILSC+V D G+S Y F+++++ + A A K+ Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323 Query: 492 NGMLMNDKKVYV 527 +L++D++++V Sbjct: 324 QNVLVDDRRIWV 335
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQY----ERDEAAHAA 479 +FI L +++L F +G + C V DP S+G+GFV Y E D A +A Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G ++ K+ V +++ + ++V + E T E L++ F Sbjct: 75 PHKVDGRVVEPKRA-----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 124 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VG + ++ L D F Q G + + + D S K G+A+V ++ D+ + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQ 164 Query: 231 NFTPING 251 + +NG Sbjct: 165 KYHTVNG 171
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQY----ERDEAAHAA 479 +FI L +++L F +G + C V DP S+G+GFV Y E D A +A Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G ++ K+ V +++ + ++V + E T E L++ F Sbjct: 75 PHKVDGRVVEPKRA-----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 124 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VG + ++ L D F Q G + + + D S K G+A+V ++ D+ + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQ 164 Query: 231 NFTPING 251 + +NG Sbjct: 165 KYHTVNG 171
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +3 Query: 354 ALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 +LH F +G +L K+ D + S+G+GFV + +EA +AIE +NG ++ + + V Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 44.3 bits (103), Expect = 3e-04 Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 8/208 (3%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 T ++VG + + + +L +F + G + +R+ D S ++ GYA++ + A A++ Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224 Query: 225 MLNFTPIN-GRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCK 401 + + I G+ + + S +F+ ++ K NK + F + Sbjct: 225 LCDSYEIRPGKHLGVCIS--------VANNRLFVGSIPK---NKTKENILEEFSKVTEGL 273 Query: 402 V------ATDPAGESKGYGFVQYE-RDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDN 560 V D +++G+ F++YE AA A ++G + V + E + Sbjct: 274 VDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPD 333 Query: 561 SPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K ++V+NLA T TE+ L++ F Sbjct: 334 PEVMAKVKVLFVRNLATTVTEEILEKSF 361 Score = 40.0 bits (92), Expect = 0.006 Identities = 35/167 (20%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIG-GVVSVRVCRDVTSRK-SLGYAYVNYNTPADAARALE 224 L+VG + + + + F+++ G+V V + +K + G+ ++ Y AA+A Sbjct: 248 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 307 Query: 225 MLNFTPIN--GRPIRIMYSNR----DPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGN 386 L + G + + +++ DP + +F++NL ++ + L +F FG Sbjct: 308 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKV-LFVRNLATTVTEEILEKSFSEFGK 366 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 + K + K Y FV +E AA A++++NG + +++ + Sbjct: 367 LERVK-------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI 406
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQY----ERDEAAHAA 479 +FI L +++L F +G + C V DP S+G+GFV Y E D A +A Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G ++ K+ V +++ + ++V + E T E L++ F Sbjct: 75 PHKVDGRVVEPKRA-----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 124 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 230 ++VG + ++ L D F Q G + + + D S K G+A+V ++ D+ + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQ 164 Query: 231 NFTPING 251 + +NG Sbjct: 165 KYHTVNG 171
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 318 FIKNLDKSIDNKALHDTFCVFGNILSCKVATD-PAGESKGYGFVQYERDEAAHAAIEKLN 494 F+ L + ++++L F FG+I K+ D G S+G+GFV ++ +++ AIE +N Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 495 GMLMNDKKVYV 527 G ++ + + V Sbjct: 69 GQELDGRNITV 79 Score = 37.7 bits (86), Expect = 0.029 Identities = 18/71 (25%), Positives = 34/71 (47%) Frame = +3 Query: 54 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLN 233 +VG L + D L F+Q G + ++ D + +S G+ +V + A+E +N Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 234 FTPINGRPIRI 266 ++GR I + Sbjct: 69 GQELDGRNITV 79
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 43.9 bits (102), Expect = 4e-04 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 25/187 (13%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVF---AQIGGVVSV--RVCRDVTSRKSLGYAYVNYNTPAD 206 A LYVG++ + + + D F ++GG+ V + +A++ + + + Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207 Query: 207 AARALEMLNFT----------PINGRPIRIMYSNRDPSLRKSGTAN---------IFIKN 329 +A+ P + +P+ M N PS+ G + +FI Sbjct: 208 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN--PSVYVPGVVSTVVPDSAHKLFIGG 265 Query: 330 LDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLM 506 L +++ + + FG + + + D A G SKGY F +Y AI LNGM + Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 325 Query: 507 NDKKVYV 527 DKK+ V Sbjct: 326 GDKKLLV 332
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 43.9 bits (102), Expect = 4e-04 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 25/187 (13%) Frame = +3 Query: 42 ATSLYVGDLDVSVQDAQLFDVF---AQIGGVVSV--RVCRDVTSRKSLGYAYVNYNTPAD 206 A LYVG++ + + + D F ++GG+ V + +A++ + + + Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207 Query: 207 AARALEMLNFT----------PINGRPIRIMYSNRDPSLRKSGTAN---------IFIKN 329 +A+ P + +P+ M N PS+ G + +FI Sbjct: 208 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN--PSVYVPGVVSTVVPDSAHKLFIGG 265 Query: 330 LDKSIDNKALHDTFCVFGNILSCKVATDPA-GESKGYGFVQYERDEAAHAAIEKLNGMLM 506 L +++ + + FG + + + D A G SKGY F +Y AI LNGM + Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 325 Query: 507 NDKKVYV 527 DKK+ V Sbjct: 326 GDKKLLV 332
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 43.9 bits (102), Expect = 4e-04 Identities = 29/96 (30%), Positives = 46/96 (47%) Frame = +3 Query: 240 PINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA 419 P +G+P N + KS + + N+ + L F FG IL ++ + Sbjct: 97 PTDGQPQTQPSENTE---NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 153 Query: 420 GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 G SKG+GFV +E A A EKL+G ++ +K+ V Sbjct: 154 G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 43.5 bits (101), Expect = 5e-04 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQY----ERDEAAHAA 479 +FI L ++L + + +G + C V DPA + S+G+GFV + E D A A Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 ++G ++ K+ V ++E V ++V + E T E L+E F Sbjct: 71 PHTIDGRVVEPKRA-----VAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYF 120
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 43.5 bits (101), Expect = 5e-04 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%) Frame = +3 Query: 267 MYSNRDPSLRKSGTAN--------IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAG 422 M +N P SG+AN +FI L +L D F FG I C V DP Sbjct: 1 MEANGSPGT--SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT 58 Query: 423 E-SKGYGFVQYERDEAAHAAIEKLNGMLMN--DKKVYVGPFVRKQERDNSPGSVKFNNVY 593 + S+G+GFV + A A+++K+ G + D K + P V R + ++ Sbjct: 59 KRSRGFGFVTF----ADPASVDKVLGQPHHELDSKT-IDPKVAFPRRAQPKMVTRTKKIF 113 Query: 594 VKNLAETTTEDDLKEIF 644 V L+ T +D+K+ F Sbjct: 114 VGGLSANTVVEDVKQYF 130
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/96 (30%), Positives = 46/96 (47%) Frame = +3 Query: 240 PINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPA 419 P +G+P N + KS + + N+ + L F FG IL ++ + Sbjct: 96 PTDGQPQTQPSENTES---KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 152 Query: 420 GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 G SKG+GFV +E A A EKL+G ++ +K+ V Sbjct: 153 G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 43.1 bits (100), Expect = 7e-04 Identities = 31/112 (27%), Positives = 51/112 (45%) Frame = +3 Query: 192 NTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTF 371 N+P+ +L +G+ + S S KS + + N+ + L F Sbjct: 84 NSPSTQNGSLTTEGGAQTDGQQSQTQSSENSES--KSTPKRLHVSNIPFRFRDPDLRQMF 141 Query: 372 CVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYV 527 FG IL ++ + G SKG+GFV +E A A EKL+G ++ +K+ V Sbjct: 142 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 192
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/78 (29%), Positives = 39/78 (50%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P+ L+VG+L V D L F G +V +R+ S K G+A++++ + Sbjct: 237 PSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNE 296 Query: 219 LEMLNFTPINGRPIRIMY 272 L+ + I GRP+R+ Y Sbjct: 297 LKDKSCRKIAGRPLRMEY 314
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 43.1 bits (100), Expect = 7e-04 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 11/126 (8%) Frame = +3 Query: 300 SGTAN--------IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQY 452 SG+AN +FI L +L D F FG I C V DP + S+G+GFV + Sbjct: 10 SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Query: 453 ERDEAAHAAIEKLNGMLMN--DKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTED 626 A A+++K+ G + D K + P V R + ++V L+ T + Sbjct: 70 ----ADPASVDKVLGQPHHELDSKT-IDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 124 Query: 627 DLKEIF 644 D+K+ F Sbjct: 125 DVKQYF 130
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Frame = +3 Query: 45 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 224 TSL V +L L VF + G V V + RD +++S G+A+V ++ DA A++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 225 MLNFTPINGRPIRIM-----------YSNRDPSLRKSGTA 311 ++ ++GR +R+ +S R P R+ G++ Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSS 113
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 42.7 bits (99), Expect = 0.001 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQY----ERDEAAHAA 479 +FI L +++L F +G + C V DP S+G+GFV Y + D A +A Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 74 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 K++G ++ K+ V +++ + ++V + E T E L++ F Sbjct: 75 PHKVDGRVVEPKRA-----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 124 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 51 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYN 194 ++VG + ++ L D F Q G + + + D S K G+A+V ++ Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 153
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 42.7 bits (99), Expect = 0.001 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQY----ERDEAAHAA 479 +FI L ++L + + +G + C V DPA + S+G+GFV + E D A A Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 ++G ++ K+ V ++E V ++V + E T E L++ F Sbjct: 83 PHSIDGRVVEPKRA-----VAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 42.7 bits (99), Expect = 0.001 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Frame = +3 Query: 315 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGE-SKGYGFVQY----ERDEAAHAA 479 +FI L ++L + + +G + C V DPA + S+G+GFV + E D A A Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70 Query: 480 IEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIF 644 ++G ++ K+ V ++E V ++V + E T E L++ F Sbjct: 71 PHSIDGRVVEPKRA-----VAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 42.7 bits (99), Expect = 0.001 Identities = 19/80 (23%), Positives = 44/80 (55%) Frame = +3 Query: 39 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 218 P+ +Y+G + + Q+ D+ + +G V+++++ D + +S GYA++ + +A A Sbjct: 16 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 75 Query: 219 LEMLNFTPINGRPIRIMYSN 278 + LN + R ++ YS+ Sbjct: 76 VRNLNGYQLGSRFLKCGYSS 95 Score = 35.4 bits (80), Expect = 0.15 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 381 GNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG 530 G +++ K+ DP G SKGY F+++ E++ +A+ LNG + + + G Sbjct: 42 GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 92
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 42.4 bits (98), Expect = 0.001 Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 14/168 (8%) Frame = +3 Query: 69 DVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPIN 248 D S++D LF + + G V V+V + R YA V + P D +ALE+ + Sbjct: 567 DTSLKDG-LFHEYKKHGKVTWVKVVGQNSER----YALVCFKKPDDVEKALEVSHDKHFF 621 Query: 249 GRPIRIM----YSNRDPSLRK----------SGTANIFIKNLDKSIDNKALHDTFCVFGN 386 G I + Y D R T +FI NL+K I L F FG Sbjct: 622 GCKIEVEPYQGYDVEDNEFRPYEAELDEYHPKSTRTLFIGNLEKDITAGELRSHFEAFGE 681 Query: 387 ILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVG 530 I+ + Y F QY + A+ K++G + ++ +G Sbjct: 682 IIEIDIKKQGL---NAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLG 726 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,261,862 Number of Sequences: 219361 Number of extensions: 1385790 Number of successful extensions: 5431 Number of sequences better than 10.0: 405 Number of HSP's better than 10.0 without gapping: 4594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5088 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
