ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags28m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PMT4_YEAST (P46971) Dolichyl-phosphate-mannose--protein mannosyl... 36 0.099

>PMT4_YEAST (P46971) Dolichyl-phosphate-mannose--protein mannosyltransferase 4|
           (EC 2.4.1.109)
          Length = 762

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 195 GFHPRGRNFRCKLYEPVLVFFTMTCSHHFRW--RVRSRAFHHY*PCRI 332
           G++   +  R KLY P++ FF   C H+F +    R +  HHY P  +
Sbjct: 624 GYYALNKMTREKLYGPLMFFFVSWCCHYFPFFLMARQKFLHHYLPAHL 671


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,543,023
Number of Sequences: 219361
Number of extensions: 1972114
Number of successful extensions: 5198
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5183
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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