| Clone Name | bags29a24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds Length = 983 Score = 1017 bits (513), Expect = 0.0 Identities = 513/513 (100%) Strand = Plus / Plus Query: 84 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 60 Query: 144 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 120 Query: 204 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 180 Query: 264 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 240 Query: 324 agcggttgggaacactgttcgacaatgccatggctcagcactctgtgatcctggtcacca 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 agcggttgggaacactgttcgacaatgccatggctcagcactctgtgatcctggtcacca 300 Query: 384 agatgctcgagcgcttcaagggattcgatggtgtgcagcggcttgtggacgtcggtggtg 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agatgctcgagcgcttcaagggattcgatggtgtgcagcggcttgtggacgtcggtggtg 360 Query: 444 gcaccggctccaccctagggatgatcacctctaagtacaagcacatgaccggcatcaact 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gcaccggctccaccctagggatgatcacctctaagtacaagcacatgaccggcatcaact 420 Query: 504 atgacctgcctcatgtcatcgcccaaggcctccctcttccaggagtcgaacatgtggctg 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 atgacctgcctcatgtcatcgcccaaggcctccctcttccaggagtcgaacatgtggctg 480 Query: 564 gagatatgtatgagagtatacccactggagatg 596 ||||||||||||||||||||||||||||||||| Sbjct: 481 gagatatgtatgagagtatacccactggagatg 513
>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene, complete cds Length = 5238 Score = 626 bits (316), Expect = e-176 Identities = 316/316 (100%) Strand = Plus / Plus Query: 231 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3335 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 3394 Query: 291 agtggccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatg 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3395 agtggccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatg 3454 Query: 351 ccatggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcg 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3455 ccatggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcg 3514 Query: 411 atggtgtgcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatca 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3515 atggtgtgcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatca 3574 Query: 471 cctctaagtacaagcacatgaccggcatcaactatgacctgcctcatgtcatcgcccaag 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3575 cctctaagtacaagcacatgaccggcatcaactatgacctgcctcatgtcatcgcccaag 3634 Query: 531 gcctccctcttccagg 546 |||||||||||||||| Sbjct: 3635 gcctccctcttccagg 3650 Score = 424 bits (214), Expect = e-115 Identities = 221/222 (99%), Gaps = 1/222 (0%) Strand = Plus / Plus Query: 11 gcaacaaggnccgaggcggcggctgcggtggaccgtatcctcaggtacctctcctgcttc 70 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2922 gcaacaagg-ccgaggcggcggctgcggtggaccgtatcctcaggtacctctcctgcttc 2980 Query: 71 aacgtggtgacctgctcttcggaggcagcaggccctgacggcacacttgtgcggcgatac 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2981 aacgtggtgacctgctcttcggaggcagcaggccctgacggcacacttgtgcggcgatac 3040 Query: 131 acgaccggccccttgtgccggtggctcaccaaagacagaggggacggcaccctgtccccc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3041 acgaccggccccttgtgccggtggctcaccaaagacagaggggacggcaccctgtccccc 3100 Query: 191 tttgccgtctttgtggtcgaccccgaccacttattcccctgg 232 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3101 tttgccgtctttgtggtcgaccccgaccacttattcccctgg 3142 Score = 107 bits (54), Expect = 4e-20 Identities = 54/54 (100%) Strand = Plus / Plus Query: 543 caggagtcgaacatgtggctggagatatgtatgagagtatacccactggagatg 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3843 caggagtcgaacatgtggctggagatatgtatgagagtatacccactggagatg 3896
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 178 bits (90), Expect = 1e-41 Identities = 192/226 (84%) Strand = Plus / Plus Query: 298 ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 357 ||||| ||||||||||||||||||||||||| |||| | ||||||||| | |||||||| Sbjct: 5364107 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 5364166 Query: 358 tcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatggtgt 417 ||||| || ||||| ||||||| |||||||||||| |||||| | |||||||| || || Sbjct: 5364167 gcagcattcagtgattctggtcagcaagatgctcgaacgcttccaaggattcgacggcgt 5364226 Query: 418 gcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctctaa 477 |||| ||| || || |||||||| || ||| |||||||| |||||||||||||| Sbjct: 5364227 ccagcagctcgtcgatgtcggtgggggtgacggatccaccctggggatgatcacctcgcg 5364286 Query: 478 gtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 |||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 5364287 gtacaagcacattaggggcatcaactatgacctgcctcatgtcatc 5364332 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 295 gccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccat 354 ||||||| |||||||||| ||||||||| || || |||| ||||||||| | ||||| Sbjct: 5171932 gccctaccacgagtacatagggaagaacaagaggctgggcgggctgttcgaccacgccat 5171991 Query: 355 ggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatgg 414 ||| |||||||| | ||||| || | |||||||||||| |||||| | || |||||||| Sbjct: 5171992 ggcgcagcactcggcgatccgggcccgcaagatgctcgaacgcttcgaaggtttcgatgg 5172051 Query: 415 tgtgcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctc 474 | |||||||| || || | |||||| ||| ||| |||||||| ||||||||||||| Sbjct: 5172052 catccagcggctcgtcgatgccggtggaggcgacggatccaccctggggatgatcaccta 5172111 Query: 475 taagtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 ||| ||||| || | ||||||||||||||||||||||| |||||| Sbjct: 5172112 gcggtataagcatattaggggcatcaactatgacctgcctcacgtcatc 5172160 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 gaacatgtggctggagatatgtatgagagtatacccactggagatg 596 |||||| | ||||||||||||||||||||| | |||| |||||||| Sbjct: 5172538 gaacatatagctggagatatgtatgagagtgtgcccaatggagatg 5172583
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 178 bits (90), Expect = 1e-41 Identities = 192/226 (84%) Strand = Plus / Plus Query: 298 ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 357 ||||| ||||||||||||||||||||||||| |||| | ||||||||| | |||||||| Sbjct: 36174 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 36233 Query: 358 tcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatggtgt 417 ||||| || ||||| ||||||| |||||||||||| |||||| | |||||||| || || Sbjct: 36234 gcagcattcagtgattctggtcagcaagatgctcgaacgcttccaaggattcgacggcgt 36293 Query: 418 gcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctctaa 477 |||| ||| || || |||||||| || ||| |||||||| |||||||||||||| Sbjct: 36294 ccagcagctcgtcgatgtcggtgggggtgacggatccaccctggggatgatcacctcgcg 36353 Query: 478 gtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 |||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 36354 gtacaagcacattaggggcatcaactatgacctgcctcatgtcatc 36399
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 178 bits (90), Expect = 1e-41 Identities = 192/226 (84%) Strand = Plus / Plus Query: 298 ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 357 ||||| ||||||||||||||||||||||||| |||| | ||||||||| | |||||||| Sbjct: 5364096 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 5364155 Query: 358 tcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatggtgt 417 ||||| || ||||| ||||||| |||||||||||| |||||| | |||||||| || || Sbjct: 5364156 gcagcattcagtgattctggtcagcaagatgctcgaacgcttccaaggattcgacggcgt 5364215 Query: 418 gcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctctaa 477 |||| ||| || || |||||||| || ||| |||||||| |||||||||||||| Sbjct: 5364216 ccagcagctcgtcgatgtcggtgggggtgacggatccaccctggggatgatcacctcgcg 5364275 Query: 478 gtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 |||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 5364276 gtacaagcacattaggggcatcaactatgacctgcctcatgtcatc 5364321 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 295 gccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccat 354 ||||||| |||||||||| ||||||||| || || |||| ||||||||| | ||||| Sbjct: 5171914 gccctaccacgagtacatagggaagaacaagaggctgggcgggctgttcgaccacgccat 5171973 Query: 355 ggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatgg 414 ||| |||||||| | ||||| || | |||||||||||| |||||| | || |||||||| Sbjct: 5171974 ggcgcagcactcggcgatccgggcccgcaagatgctcgaacgcttcgaaggtttcgatgg 5172033 Query: 415 tgtgcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctc 474 | |||||||| || || | |||||| ||| ||| |||||||| ||||||||||||| Sbjct: 5172034 catccagcggctcgtcgatgccggtggaggcgacggatccaccctggggatgatcaccta 5172093 Query: 475 taagtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 ||| ||||| || | ||||||||||||||||||||||| |||||| Sbjct: 5172094 gcggtataagcatattaggggcatcaactatgacctgcctcacgtcatc 5172142 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 gaacatgtggctggagatatgtatgagagtatacccactggagatg 596 |||||| | ||||||||||||||||||||| | |||| |||||||| Sbjct: 5172520 gaacatatagctggagatatgtatgagagtgtgcccaatggagatg 5172565
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 178 bits (90), Expect = 1e-41 Identities = 192/226 (84%) Strand = Plus / Minus Query: 298 ctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccatggc 357 ||||| ||||||||||||||||||||||||| |||| | ||||||||| | |||||||| Sbjct: 101701 ctacttcgagtacatggggaagaaccagcggctgggcgcgctgttcgaccacgccatggc 101642 Query: 358 tcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatggtgt 417 ||||| || ||||| ||||||| |||||||||||| |||||| | |||||||| || || Sbjct: 101641 gcagcattcagtgattctggtcagcaagatgctcgaacgcttccaaggattcgacggcgt 101582 Query: 418 gcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctctaa 477 |||| ||| || || |||||||| || ||| |||||||| |||||||||||||| Sbjct: 101581 ccagcagctcgtcgatgtcggtgggggtgacggatccaccctggggatgatcacctcgcg 101522 Query: 478 gtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 |||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 101521 gtacaagcacattaggggcatcaactatgacctgcctcatgtcatc 101476
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124959 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Minus Query: 295 gccctactacgagtacatggggaagaaccagcggttgggaacactgttcgacaatgccat 354 ||||||| |||||||||| ||||||||| || || |||| ||||||||| | ||||| Sbjct: 91667 gccctaccacgagtacatagggaagaacaagaggctgggcgggctgttcgaccacgccat 91608 Query: 355 ggctcagcactctgtgatcctggtcaccaagatgctcgagcgcttcaagggattcgatgg 414 ||| |||||||| | ||||| || | |||||||||||| |||||| | || |||||||| Sbjct: 91607 ggcgcagcactcggcgatccgggcccgcaagatgctcgaacgcttcgaaggtttcgatgg 91548 Query: 415 tgtgcagcggcttgtggacgtcggtggtggcaccggctccaccctagggatgatcacctc 474 | |||||||| || || | |||||| ||| ||| |||||||| ||||||||||||| Sbjct: 91547 catccagcggctcgtcgatgccggtggaggcgacggatccaccctggggatgatcaccta 91488 Query: 475 taagtacaagcacatgaccggcatcaactatgacctgcctcatgtcatc 523 ||| ||||| || | ||||||||||||||||||||||| |||||| Sbjct: 91487 gcggtataagcatattaggggcatcaactatgacctgcctcacgtcatc 91439 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 551 gaacatgtggctggagatatgtatgagagtatacccactggagatg 596 |||||| | ||||||||||||||||||||| | |||| |||||||| Sbjct: 91061 gaacatatagctggagatatgtatgagagtgtgcccaatggagatg 91016
>ref|XM_470970.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1065 Score = 75.8 bits (38), Expect = 1e-10 Identities = 118/142 (83%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 382 caagatgctcgagcgcttcaagggattcgatggtgtgcagcg-gcttgtggacgtcggtg 440 |||| |||||||||| ||| |||| ||||| || || ||||| ||| || |||||||| | Sbjct: 537 caagctgctcgagcgattccaggggttcgacggcgt-cagcgtgctcgtcgacgtcggcg 595 Query: 441 gtggcaccggctccaccctagggatgatcacctctaagtacaagcacatgaccggcatca 500 | ||||||||| ||||||| | ||||||||| || | ||||||| |||| |||||| | | Sbjct: 596 ggggcaccggcgccaccctggagatgatcacttcgaggtacaagaacatcaccggcgtta 655 Query: 501 actatgacctgcctcatgtcat 522 ||| ||||||||||||||||| Sbjct: 656 acttcgacctgcctcatgtcat 677
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 75.8 bits (38), Expect = 1e-10 Identities = 118/142 (83%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 382 caagatgctcgagcgcttcaagggattcgatggtgtgcagcg-gcttgtggacgtcggtg 440 |||| |||||||||| ||| |||| ||||| || || ||||| ||| || |||||||| | Sbjct: 103466 caagctgctcgagcgattccaggggttcgacggcgt-cagcgtgctcgtcgacgtcggcg 103524 Query: 441 gtggcaccggctccaccctagggatgatcacctctaagtacaagcacatgaccggcatca 500 | ||||||||| ||||||| | ||||||||| || | ||||||| |||| |||||| | | Sbjct: 103525 ggggcaccggcgccaccctggagatgatcacttcgaggtacaagaacatcaccggcgtta 103584 Query: 501 actatgacctgcctcatgtcat 522 ||| ||||||||||||||||| Sbjct: 103585 acttcgacctgcctcatgtcat 103606
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 1e-10 Identities = 118/142 (83%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 382 caagatgctcgagcgcttcaagggattcgatggtgtgcagcg-gcttgtggacgtcggtg 440 |||| |||||||||| ||| |||| ||||| || || ||||| ||| || |||||||| | Sbjct: 307646 caagctgctcgagcgattccaggggttcgacggcgt-cagcgtgctcgtcgacgtcggcg 307704 Query: 441 gtggcaccggctccaccctagggatgatcacctctaagtacaagcacatgaccggcatca 500 | ||||||||| ||||||| | ||||||||| || | ||||||| |||| |||||| | | Sbjct: 307705 ggggcaccggcgccaccctggagatgatcacttcgaggtacaagaacatcaccggcgtta 307764 Query: 501 actatgacctgcctcatgtcat 522 ||| ||||||||||||||||| Sbjct: 307765 acttcgacctgcctcatgtcat 307786 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 431 gacgtcggtggtggcaccggctccaccctagggatgatcacctctaagtacaagcacatg 490 |||||||| || ||||||||| ||||||| | |||||||||||| ||||||||| || Sbjct: 5127492 gacgtcggcgggggcaccggcgccaccctggagatgatcacctcccggtacaagcatatc 5127551 Query: 491 accggcatcaactatgacctgcctcatgtcatc 523 |||||| | |||| ||||| || ||||||||| Sbjct: 5127552 accggcgttaacttcgacctaccccatgtcatc 5127584 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 ggcgggccgtcggcgtttgagaggacgca 288 ||||||||||||||||| |||||| |||| Sbjct: 5127321 ggcgggccgtcggcgttcgagagggcgca 5127349
>dbj|AK069960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K22, full insert sequence Length = 1233 Score = 69.9 bits (35), Expect = 9e-09 Identities = 115/139 (82%), Gaps = 2/139 (1%) Strand = Plus / Plus Query: 382 caagatgctcgagcgcttcaagggattcgatggtgtgcagcg-gcttgtggacgtcggtg 440 |||| |||||||||| ||| |||| ||||| || || ||||| ||| || |||||||| | Sbjct: 547 caagctgctcgagcgattccaggggttcgacggcgt-cagcgtgctcgtcgacgtcggcg 605 Query: 441 gtggcaccggctccaccctagggatgatcacctctaagtacaagcacatgaccggcatca 500 | ||||||||| ||||||| | ||||||||| || | ||||||| |||| |||||| | | Sbjct: 606 ggggcaccggcgccaccctggagatgatcacttcgaggtacaagaacatcaccggcgtta 665 Query: 501 actatgacctgcctcatgt 519 ||| |||||||||||||| Sbjct: 666 acttcgacctgcctcatgt 684
>ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 431 gacgtcggtggtggcaccggctccaccctagggatgatcacctctaagtacaagcacatg 490 |||||||| || ||||||||| ||||||| | |||||||||||| ||||||||| || Sbjct: 655 gacgtcggcgggggcaccggcgccaccctggagatgatcacctcccggtacaagcatatc 714 Query: 491 accggcatcaactatgacctgcctcatgtcatc 523 |||||| | |||| ||||| || ||||||||| Sbjct: 715 accggcgttaacttcgacctaccccatgtcatc 747 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 ggcgggccgtcggcgtttgagaggacgca 288 ||||||||||||||||| |||||| |||| Sbjct: 484 ggcgggccgtcggcgttcgagagggcgca 512
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 431 gacgtcggtggtggcaccggctccaccctagggatgatcacctctaagtacaagcacatg 490 |||||||| || ||||||||| ||||||| | |||||||||||| ||||||||| || Sbjct: 103765 gacgtcggcgggggcaccggcgccaccctggagatgatcacctcccggtacaagcatatc 103824 Query: 491 accggcatcaactatgacctgcctcatgtcatc 523 |||||| | |||| ||||| || ||||||||| Sbjct: 103825 accggcgttaacttcgacctaccccatgtcatc 103857 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 ggcgggccgtcggcgtttgagaggacgca 288 ||||||||||||||||| |||||| |||| Sbjct: 103594 ggcgggccgtcggcgttcgagagggcgca 103622
>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full insert sequence Length = 1308 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 431 gacgtcggtggtggcaccggctccaccctagggatgatcacctctaagtacaagcacatg 490 |||||||| || ||||||||| ||||||| | |||||||||||| ||||||||| || Sbjct: 681 gacgtcggcgggggcaccggcgccaccctggagatgatcacctcccggtacaagcatatc 740 Query: 491 accggcatcaactatgacctgcctcatgtcatc 523 |||||| | |||| ||||| || ||||||||| Sbjct: 741 accggcgttaacttcgacctaccccatgtcatc 773 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 ggcgggccgtcggcgtttgagaggacgca 288 ||||||||||||||||| |||||| |||| Sbjct: 510 ggcgggccgtcggcgttcgagagggcgca 538
>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full insert sequence Length = 1365 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 431 gacgtcggtggtggcaccggctccaccctagggatgatcacctctaagtacaagcacatg 490 |||||||| || ||||||||| ||||||| | |||||||||||| ||||||||| || Sbjct: 668 gacgtcggcgggggcaccggcgccaccctggagatgatcacctcccggtacaagcatatc 727 Query: 491 accggcatcaactatgacctgcctcatgtcatc 523 |||||| | |||| ||||| || ||||||||| Sbjct: 728 accggcgttaacttcgacctaccccatgtcatc 760 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 ggcgggccgtcggcgtttgagaggacgca 288 ||||||||||||||||| |||||| |||| Sbjct: 497 ggcgggccgtcggcgttcgagagggcgca 525
>gb|U63634.1|MCU63634 Mesembryanthemum crystallinum inositol methyltransferase (Imt1) gene, complete cds Length = 3929 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 494 ggcatcaactatgacctgcctcatgtcat 522 ||||||||||||||| ||||||||||||| Sbjct: 2780 ggcatcaactatgacttgcctcatgtcat 2808
>gb|M87340.1|CIPIMT1A Mesembryanthemum crystallinum methyl transferase (Imt1) mRNA, complete cds Length = 1494 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 494 ggcatcaactatgacctgcctcatgtcat 522 ||||||||||||||| ||||||||||||| Sbjct: 728 ggcatcaactatgacttgcctcatgtcat 756
>gb|AF067968.1|AF067968 Mesembryanthemum crystallinum caffeic acid 3-O-methyltransferase mRNA, partial cds Length = 1205 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 494 ggcatcaactatgacctgcctcatgtcatcg 524 |||||||||| ||| |||||||||||||||| Sbjct: 636 ggcatcaactttgatctgcctcatgtcatcg 666
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 ggtgtgcagcggcttgtggacg 434 |||||||||||||||||||||| Sbjct: 1987779 ggtgtgcagcggcttgtggacg 1987800
>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence Length = 238262 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 552 aacatgtggctggagatatgtatga 576 |||||||||||||| |||||||||| Sbjct: 237784 aacatgtggctggatatatgtatga 237760
>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A), NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete cds Length = 73617 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ccgaggcggcggctgcggtgg 41 ||||||||||||||||||||| Sbjct: 2757 ccgaggcggcggctgcggtgg 2777
>gb|AY041136.1| Metopus palaeformis clone 4 alpha-tubulin gene, partial cds Length = 1095 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 cgtcggtggtggcaccggctc 453 ||||||||||||||||||||| Sbjct: 306 cgtcggtggtggcaccggctc 326
>gb|AY041135.1| Metopus palaeformis clone 3 alpha-tubulin gene, partial cds Length = 1095 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 cgtcggtggtggcaccggctc 453 ||||||||||||||||||||| Sbjct: 306 cgtcggtggtggcaccggctc 326
>gb|AY041134.1| Metopus palaeformis clone 2 alpha-tubulin gene, partial cds Length = 1094 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 cgtcggtggtggcaccggctc 453 ||||||||||||||||||||| Sbjct: 306 cgtcggtggtggcaccggctc 326
>gb|AY041133.1| Metopus palaeformis clone 1 alpha-tubulin gene, partial cds Length = 1082 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 cgtcggtggtggcaccggctc 453 ||||||||||||||||||||| Sbjct: 293 cgtcggtggtggcaccggctc 313
>dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430501C11 product:unclassifiable, full insert sequence Length = 1789 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 552 aacatgtggctggagatatgtatga 576 |||||||||||||| |||||||||| Sbjct: 1048 aacatgtggctggatatatgtatga 1024
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 cttgtggacgtcggtggtggc 445 ||||||||||||||||||||| Sbjct: 4165837 cttgtggacgtcggtggtggc 4165857
>gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosome 6, complete sequence Length = 150872 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 552 aacatgtggctggagatatgtatga 576 |||||||||||||| |||||||||| Sbjct: 45975 aacatgtggctggatatatgtatga 45951
>ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA Length = 1588 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 157 caccaaagacagaggggacggcaccctg 184 |||||||||||||| ||| ||||||||| Sbjct: 448 caccaaagacagagtggatggcaccctg 475
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 atgctcgagcgcttcaaggg 405 |||||||||||||||||||| Sbjct: 406734 atgctcgagcgcttcaaggg 406715
>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence Length = 195926 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tcggtggtggcaccggctcc 454 |||||||||||||||||||| Sbjct: 156233 tcggtggtggcaccggctcc 156214
>ref|XM_960728.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial mRNA Length = 3549 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 ccaaggcctccctcttccag 545 |||||||||||||||||||| Sbjct: 92 ccaaggcctccctcttccag 111
>ref|XM_954671.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial mRNA Length = 843 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 catcgcccaaggcctccctc 539 |||||||||||||||||||| Sbjct: 246 catcgcccaaggcctccctc 265
>ref|XM_324860.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial mRNA Length = 3549 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 ccaaggcctccctcttccag 545 |||||||||||||||||||| Sbjct: 92 ccaaggcctccctcttccag 111
>ref|XM_331113.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial mRNA Length = 843 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 catcgcccaaggcctccctc 539 |||||||||||||||||||| Sbjct: 246 catcgcccaaggcctccctc 265
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 atgctcgagcgcttcaaggg 405 |||||||||||||||||||| Sbjct: 3254218 atgctcgagcgcttcaaggg 3254199
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 atgctcgagcgcttcaaggg 405 |||||||||||||||||||| Sbjct: 2984090 atgctcgagcgcttcaaggg 2984071
>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the Myo1g gene for myosin 1G, a novel gene, a ribosomal protein L21 (Rpl21) pseudogene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 93553 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 ggcggtgactgcgggcgggccgtcggcg 274 ||||| |||||||||||||||| ||||| Sbjct: 51848 ggcggagactgcgggcgggccggcggcg 51875
>emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clone 34p8 Length = 1588 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 157 caccaaagacagaggggacggcaccctg 184 |||||||||||||| ||| ||||||||| Sbjct: 448 caccaaagacagagtggatggcaccctg 475
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gactgcgggcgggccgtcgg 272 |||||||||||||||||||| Sbjct: 1530596 gactgcgggcgggccgtcgg 1530577
>ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript variant A (CG31064), mRNA Length = 3084 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ccgaggcggcggctgcggtg 40 |||||||||||||||||||| Sbjct: 2088 ccgaggcggcggctgcggtg 2107
>ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript variant E (CG31064), mRNA Length = 3628 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ccgaggcggcggctgcggtg 40 |||||||||||||||||||| Sbjct: 2635 ccgaggcggcggctgcggtg 2654
>gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA Length = 2963 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ccgaggcggcggctgcggtg 40 |||||||||||||||||||| Sbjct: 1957 ccgaggcggcggctgcggtg 1976
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gcgcttcaagggattcgatg 413 |||||||||||||||||||| Sbjct: 833378 gcgcttcaagggattcgatg 833397
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gaggcggcggctgcggtgga 42 |||||||||||||||||||| Sbjct: 20905653 gaggcggcggctgcggtgga 20905634
>gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, region 97E-98A, BAC clone BACR02B05, complete sequence Length = 189694 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ccgaggcggcggctgcggtg 40 |||||||||||||||||||| Sbjct: 45888 ccgaggcggcggctgcggtg 45869
>gb|AC067918.1|AC067918 Neurospora crassa chromosome 7, clone G23-F12, complete sequence Length = 42412 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 catcgcccaaggcctccctc 539 |||||||||||||||||||| Sbjct: 5763 catcgcccaaggcctccctc 5744
>emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clone B23N11 Length = 46353 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 catcgcccaaggcctccctc 539 |||||||||||||||||||| Sbjct: 39967 catcgcccaaggcctccctc 39948
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gaggcggcggctgcggtgga 42 |||||||||||||||||||| Sbjct: 32577 gaggcggcggctgcggtgga 32558
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete sequence Length = 222554 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ccgaggcggcggctgcggtg 40 |||||||||||||||||||| Sbjct: 215219 ccgaggcggcggctgcggtg 215200
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 atgctcgagcgcttcaaggg 405 |||||||||||||||||||| Sbjct: 1888832 atgctcgagcgcttcaaggg 1888851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,191,274 Number of Sequences: 3902068 Number of extensions: 4191274 Number of successful extensions: 67324 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66825 Number of HSP's gapped (non-prelim): 499 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)