ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags28l17 |
|---|---|
| Clone Library Name | barley_pub |
>PSD3_TOBAC (P93768) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Nuclear antigen 21D7) Length = 488 Score = 81.6 bits (200), Expect = 5e-16 Identities = 40/53 (75%), Positives = 42/53 (79%) Frame = +2 Query: 2 EYTDAKESLLQXXXXXXXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EYTDAKESLLQ GFR+Q NKWAIIVRLLLGEIPERTVFMQKGM+ Sbjct: 255 EYTDAKESLLQAARKAPQAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGME 307
>PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Nuclear antigen 21D7) Length = 489 Score = 79.3 bits (194), Expect = 3e-15 Identities = 38/53 (71%), Positives = 41/53 (77%) Frame = +2 Query: 2 EYTDAKESLLQXXXXXXXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EYTDAKES LQ GFR+Q NKWA+IVRLLLGEIPERTVFMQKGM+ Sbjct: 256 EYTDAKESXLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGME 308
>PSD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulatory subunit 3b| (26S proteasome subunit S3-b) Length = 487 Score = 77.8 bits (190), Expect = 8e-15 Identities = 38/53 (71%), Positives = 41/53 (77%) Frame = +2 Query: 2 EYTDAKESLLQXXXXXXXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EYTDAKESLLQ GFRIQ NKWAIIVRLLLGEIPER++F QKGM+ Sbjct: 254 EYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGME 306
>PSD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulatory subunit 3a| (26S proteasome subunit S3-a) Length = 488 Score = 77.0 bits (188), Expect = 1e-14 Identities = 37/53 (69%), Positives = 41/53 (77%) Frame = +2 Query: 2 EYTDAKESLLQXXXXXXXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EYTDAKESLLQ GFRIQ NKWAI+VRLLLGEIPER++F QKGM+ Sbjct: 255 EYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGME 307
>PSD3_DROME (P25161) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Diphenol oxidase A2 component) (DOX-A2) Length = 494 Score = 43.5 bits (101), Expect = 2e-04 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +2 Query: 2 EYTDAKESLLQXXXXX-XXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EY+DA + L+Q GFR K I+V LLLG IPER VF Q G++ Sbjct: 262 EYSDAHKHLVQALRKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLR 315
>PSD3_ANOST (Q9U5Z8) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Diphenol oxidase A2 component) (DOX-A2) Length = 500 Score = 38.9 bits (89), Expect = 0.004 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 2 EYTDAKESLLQXXXXX-XXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EY+ A + L+Q GFR K I+V LLLG+IPER VF Q ++ Sbjct: 268 EYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALR 321
>PSD3_ANOGA (O61470) Probable 26S proteasome non-ATPase regulatory subunit 3| (26S proteasome subunit S3) (Diphenol oxidase A2 component) (DOX-A2) Length = 496 Score = 38.9 bits (89), Expect = 0.004 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 2 EYTDAKESLLQXXXXX-XXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EY+ A + L+Q GFR K I+V LLLG+IPER VF Q ++ Sbjct: 264 EYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALR 317
>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit S3) (Proteasome subunit p58) Length = 534 Score = 36.2 bits (82), Expect = 0.025 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 2 EYTDAKESLLQXXXXX-XXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EY++A+ ++ GF+ +K I+V LLLGEIP+R F Q +K Sbjct: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 354
>PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit rpn-3) Length = 504 Score = 36.2 bits (82), Expect = 0.025 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +2 Query: 65 GFRIQXNKWAIIVRLLLGEIPERTVFMQ 148 GF+ KW +++ LL GEIP+R+VF Q Sbjct: 291 GFKQAVQKWVVVIGLLQGEIPDRSVFRQ 318
>PSD3_MOUSE (P14685) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit S3) (Proteasome subunit p58) (Transplantation antigen P91A) (Tum-P91A antigen) Length = 530 Score = 36.2 bits (82), Expect = 0.025 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 2 EYTDAKESLLQXXXXX-XXXXXGFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 EY++A+ ++ GF+ +K I+V LLLGEIP+R F Q +K Sbjct: 297 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK 350
>RPN3_SCHPO (O42897) Probable 26S proteasome regulatory subunit rpn3| Length = 497 Score = 33.9 bits (76), Expect = 0.12 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +2 Query: 2 EYTDAKESLLQXXXXXXXXXXG--FRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 +YT A E L+ F K I+V+LL+GEIPER +F QK ++ Sbjct: 263 DYTTAHEHLVSAIRKAPNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLE 317
>RPN3_YEAST (P40016) 26S proteasome regulatory subunit RPN3| Length = 523 Score = 30.8 bits (68), Expect = 1.1 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 65 GFRIQXNKWAIIVRLLLGEIPERTVFMQKGMK 160 GF Q NK ++LL+G+IPE + F Q M+ Sbjct: 308 GFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,653,995 Number of Sequences: 219361 Number of extensions: 293166 Number of successful extensions: 626 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 625 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 626 length of database: 80,573,946 effective HSP length: 29 effective length of database: 74,212,477 effective search space used: 1781099448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
