>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  551 bits (278), Expect = e-154
 Identities = 390/425 (91%), Gaps = 3/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gagctttgcgctaagagagttcatccgcagccatgaagggcaccaagctggcggcgatcc 75
           |||||||||||||| || ||||||| |||  ||||||| |||||||||| ||||||||||
Sbjct: 56  gagctttgcgctaa-agggttcatcagcaagcatgaagagcaccaagctcgcggcgatcc 114

                                                                       
Query: 76  tcatcctccaggccgtcctggtcatggggatcctctcccacgtgaacgccgacttcttcc 135
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115 tgatcctccaggccgtcctggtcatggggatcctctcacacgtgaacgccgacttcttcc 174

                                                                       
Query: 136 ccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacgacgcccacc 195
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 175 ccaagtgctgcaacaactgcaggtccttctccggggtcgacgtctgcgacgacgcccacc 234

                                                                       
Query: 196 ccaagtgccccaaaggctgctccgcctgccgcgtggtgaccccgagccctcacaagacgt 255
           || |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 235 cccagtgccccaagggctgctcggcctgccgcgtggtgacgcccagccctcacaagacgt 294

                                                                       
Query: 256 tccgctgcgccgacatgaagagcaccgtcgacggcacctgcggtggcccatgcaaaaagc 315
           |||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 295 tccggtgcgccgacatgaagagcaccgtcgatggcacctgcggcgggccatgcaaaaagc 354

                                                                       
Query: 316 actgatcgcttcagggcttcaggctcggacgaggtgtgccgcctagaataaagctcagat 375
           |||||||  ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||
Sbjct: 355 actgatccgttcagggcttcagtctcagacgaggggtgccgcctaaaataaagctcagat 414

                                                                       
Query: 376 gagatgagcagtcatcgtgttgctatgcttgtgtgtgggccgcgttatacggccaacaat 435
           ||||||||||||||| | |   |||||||| | |||||| || | |||||||||||||||
Sbjct: 415 gagatgagcagtcatggcg--cctatgcttctctgtgggtcgtgctatacggccaacaat 472

                
Query: 436 atgta 440
           |||||
Sbjct: 473 atgta 477

>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  307 bits (155), Expect = 2e-80
 Identities = 256/289 (88%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 37  catccgcagccatgaagggcaccaagctggcggcgatcctcatcctccaggccgtcctgg 96
           |||| ||| ||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct: 1   catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60

                                                                       
Query: 97  tcatggggatcctctcccacgtgaacgccgacttcttccccaagtgctgcaacaactgca 156
           |||||||  ||||||| ||||||||||||| ||  ||||||| |||||||||||||||||
Sbjct: 61  tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120

                                                                       
Query: 157 ggtccttctcgggggtcgacgtctgcgacgacgcccaccccaagtgccccaaaggctgct 216
           |||||||||| |||||||||||||||||||||||||| ||  |||||||||  |||||||
Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180

                                                                       
Query: 217 ccgcctgccgcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaaga 276
           | || ||||||||||||||| ||| |||   | |||||||||||||||||||||||||  
Sbjct: 181 cggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatgaaag 237

                                                            
Query: 277 gcaccgtcgacggcacctgcggtggcccatgcaaaaagcactgatcgct 325
            ||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct: 238 ccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatcgct 286

>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  295 bits (149), Expect = 8e-77
 Identities = 250/283 (88%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 46  ccatgaagggcaccaagctggcggcgatcctcatcctccaggccgtcctggtcatgggga 105
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  
Sbjct: 71  ccatgaagggcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggac 130

                                                                       
Query: 106 tcctctcccacgtgaacgccgacttcttccccaagtgctgcaacaactgcaggtccttct 165
           ||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 131 tcctctcacacgtgaacgccgattttttccccaagtgctgcaacaactgcaggtccttct 190

                                                                       
Query: 166 cgggggtcgacgtctgcgacgacgcccaccccaagtgccccaaaggctgctccgcctgcc 225
           ||||||||||||||||||||||||||||||||||||| ||| | |||||||| || ||||
Sbjct: 191 cgggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggctgctcggcgtgcc 250

                                                                       
Query: 226 gcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcg 285
           |||||||| |  |||||||   | | | ||  |||||||| || |||||   ||||||||
Sbjct: 251 gcgtggtgtcgacgagccc---cgaaatgtggcgctgcgcggatatgaaatccaccgtcg 307

                                                      
Query: 286 acggcacctgcggtggcccatgcaaaaagcactgatcgcttca 328
           |||||||||||||||| || ||||| ||| |||||||| ||||
Sbjct: 308 acggcacctgcggtggaccctgcaagaagtactgatcggttca 350



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 450 tcgtcactgngttttctctctcgacaaaaagctggtgttgcttgttg 496
           ||||| ||| |||||||||||||| |||||| |||||||||||||||
Sbjct: 467 tcgtcgctgtgttttctctctcgagaaaaagttggtgttgcttgttg 513

>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score =  117 bits (59), Expect = 4e-23
 Identities = 118/137 (86%), Gaps = 3/137 (2%)
 Strand = Plus / Plus

                                                                       
Query: 68  ggcgatcctcatcctccaggccgtcctggtcatggggatcctctcccacgtgaacgccga 127
           ||||||||| || ||||||||||||||||||||||| |||||||| || | |||||||||
Sbjct: 96  ggcgatcctgattctccaggccgtcctggtcatgggaatcctctcacaggcgaacgccga 155

                                                                       
Query: 128 cttcttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacga 187
            |||   || || |||||| |||||||||||| ||||||||||| ||  |||||||||||
Sbjct: 156 gttc---ccgaaatgctgcgacaactgcaggttcttctcgggggccgtggtctgcgacga 212

                            
Query: 188 cgcccaccccaagtgcc 204
           ||||  |||||||||||
Sbjct: 213 cgccggccccaagtgcc 229

>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score =  117 bits (59), Expect = 4e-23
 Identities = 115/133 (86%), Gaps = 3/133 (2%)
 Strand = Plus / Plus

                                                                       
Query: 72  atcctcatcctccaggccgtcctggtcatggggatcctctcccacgtgaacgccgacttc 131
           ||||| ||||| |||||||||||||||||||| |||||||| || | ||||||||| |||
Sbjct: 79  atcctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccgagttc 138

                                                                       
Query: 132 ttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacgacgcc 191
              |||||||||||| |||||||||||| ||||||||||| ||  |||||||| ||||||
Sbjct: 139 ---cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195

                        
Query: 192 caccccaagtgcc 204
             |||||||||||
Sbjct: 196 ggccccaagtgcc 208

>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 79    tcctccaggccgtcctggtcatggggatcctctccc 114
             ||||||||||| ||||||||||||| ||||||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctccc 71845

>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 81  ctccaggccgtcctggtcatggggat 106
           ||||||||||||||||||||||||||
Sbjct: 34  ctccaggccgtcctggtcatggggat 59

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 81      ctccaggccgtcctggtcatggggat 106
               ||||||||||||||||||||||||||
Sbjct: 1757697 ctccaggccgtcctggtcatggggat 1757672

>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 81     ctccaggccgtcctggtcatggggat 106
              ||||||||||||||||||||||||||
Sbjct: 100040 ctccaggccgtcctggtcatggggat 100015

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 91       tcctggtcatggggatcctctcc 113
                |||||||||||||||||||||||
Sbjct: 25930562 tcctggtcatggggatcctctcc 25930540

>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 91    tcctggtcatggggatcctctcc 113
             |||||||||||||||||||||||
Sbjct: 85660 tcctggtcatggggatcctctcc 85638

>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full
           insert sequence
          Length = 2261

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  tcctggtcatggggatcctctcc 113
           |||||||||||||||||||||||
Sbjct: 818 tcctggtcatggggatcctctcc 840

>emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 118034

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 479   agctggtgttgcttgttgaat 499
             |||||||||||||||||||||
Sbjct: 45458 agctggtgttgcttgttgaat 45438

>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    tgaagagcaccgtcgacggca 291
              |||||||||||||||||||||
Sbjct: 634902 tgaagagcaccgtcgacggca 634922

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     caagtgctgcaacaactgca 156
               ||||||||||||||||||||
Sbjct: 2027891 caagtgctgcaacaactgca 2027872

>ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA
          Length = 2659

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  gcaccgtcgacggcacctgc 296
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389

>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence
          Length = 184556

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 483   ggtgttgcttgttgaataaa 502
             ||||||||||||||||||||
Sbjct: 83198 ggtgttgcttgttgaataaa 83217

>ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c), mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  gcaccgtcgacggcacctgc 296
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137

>gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA clone MGC:136662
            IMAGE:8000407), complete cds
          Length = 2659

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  gcaccgtcgacggcacctgc 296
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 63      ctggcggcgatcctcatcctccaggccg 90
               |||||||||||||| |||||||| ||||
Sbjct: 1946747 ctggcggcgatcctgatcctccacgccg 1946720

>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162004

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   agctcagatgagatgagcag 386
             ||||||||||||||||||||
Sbjct: 86131 agctcagatgagatgagcag 86150

>ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572763), partial mRNA
          Length = 240

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 gcaccgtcgacggcacctgc 296
           ||||||||||||||||||||
Sbjct: 136 gcaccgtcgacggcacctgc 117

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 294     tgcggtggcccatgcaaaaa 313
               ||||||||||||||||||||
Sbjct: 1357655 tgcggtggcccatgcaaaaa 1357636

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    gttccgctgcgccgacatga 273
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692

>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  gttccgctgcgccgacatga 273
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347

>gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  gcaccgtcgacggcacctgc 296
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,609,777
Number of Sequences: 3902068
Number of extensions: 3609777
Number of successful extensions: 62499
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62214
Number of HSP's gapped (non-prelim): 281
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)