ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags28k09 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/28 (71%), Positives = 25/28 (89%) Frame = +1 Query: 103 MYSWEMLSFNIHDGFLEAIVRGNRSGLL 186 MY +E L+FNIH G+LEAIVRG+R+GLL Sbjct: 1 MYGFEALTFNIHGGYLEAIVRGHRAGLL 28
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/28 (71%), Positives = 25/28 (89%) Frame = +1 Query: 103 MYSWEMLSFNIHDGFLEAIVRGNRSGLL 186 MY +E L+FNIH G+LEAIVRG+R+GLL Sbjct: 1 MYGFEALTFNIHGGYLEAIVRGHRAGLL 28
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 32.3 bits (72), Expect = 0.35 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = +1 Query: 115 EMLSFNIHDGFLEAIVRGNRSGLL 186 E + FNI +GF+E +VRG R+GLL Sbjct: 2 EGVYFNIDNGFIEGVVRGYRNGLL 25
>LEU21_METJA (Q58409) 3-isopropylmalate dehydratase large subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 420 Score = 32.3 bits (72), Expect = 0.35 Identities = 23/54 (42%), Positives = 27/54 (50%) Frame = -3 Query: 186 EESRAVPPHDRLQEPIVDVERQHLPRVHLGSHRRKDLGRGEGDREAASCRSGRE 25 EE AVP H +PI DVE + +V +GS GR REAA GRE Sbjct: 271 EEQVAVPHHPDNVKPISDVEGTEINQVFIGSCTN---GRLSDLREAAKYLKGRE 321
>CHRD_MOUSE (Q9Z0E2) Chordin precursor| Length = 948 Score = 32.0 bits (71), Expect = 0.46 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +1 Query: 52 LPIPLASAEILPPVRTKMYSWEMLSFNIH 138 LP+PLA A +LPPVR++ LS + H Sbjct: 530 LPVPLAGALVLPPVRSQAAGHAWLSLDTH 558
>CHRD_HUMAN (Q9H2X0) Chordin precursor| Length = 955 Score = 30.8 bits (68), Expect = 1.0 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 52 LPIPLASAEILPPVRTKMYSWEMLSFNIH 138 LP+PLA A +LPPV+++ LS + H Sbjct: 534 LPVPLAGALVLPPVKSQAAGHAWLSLDTH 562
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 30.8 bits (68), Expect = 1.0 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +1 Query: 115 EMLSFNIHDGFLEAIVRGNRSGLL 186 + LSFN + G++EA+VRG S LL Sbjct: 2 DALSFNTNSGYIEALVRGYESALL 25
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 30.8 bits (68), Expect = 1.0 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = +1 Query: 115 EMLSFNIHDGFLEAIVRGNRSGLL 186 E L FN+++G++E IVRG R+ LL Sbjct: 2 EGLLFNVNNGYIEGIVRGYRNSLL 25
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 30.0 bits (66), Expect = 1.8 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +1 Query: 118 MLSFNIHDGFLEAIVRGNRSGLL 186 + +FN DG+LEAI+RG + G+L Sbjct: 12 LFTFNKDDGYLEAILRGFKKGIL 34
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +1 Query: 121 LSFNIHDGFLEAIVRGNRSGLL 186 L FN+ +G+LE +VRG ++G+L Sbjct: 7 LYFNVDNGYLEGLVRGLKAGVL 28
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +1 Query: 121 LSFNIHDGFLEAIVRGNRSGLL 186 L FN+ +G+LE +VRG ++G+L Sbjct: 7 LYFNVDNGYLEGLVRGLKAGVL 28
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +1 Query: 121 LSFNIHDGFLEAIVRGNRSGLL 186 L FN+ +G+LE +VRG ++G+L Sbjct: 7 LYFNVDNGYLEGLVRGLKAGVL 28
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +1 Query: 121 LSFNIHDGFLEAIVRGNRSGLL 186 L FN+ +G+LE +VRG ++G+L Sbjct: 7 LYFNVDNGYLEGLVRGLKAGVL 28
>SODC_HAECO (Q27666) Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)| Length = 159 Score = 28.1 bits (61), Expect = 6.7 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = -3 Query: 162 HDRLQEPIVDVERQHLPR-----VHLGSHRRKDLGRGEGDREAASCRSGREFAPXGCG 4 H +++ +V + +H VH G+ DLG+G G+++ S ++G A CG Sbjct: 97 HFEIKDHLVKIHGEHTVVGRSLVVHAGTD---DLGKGVGEKKEESLKTGNRGARVACG 151
>EXO1_DROME (Q24558) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I) (Protein tosca)| Length = 732 Score = 28.1 bits (61), Expect = 6.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 147 EPIVDVERQHLPRVHLGSHRRKDLGRGEGDREAASCRSGR 28 +PI+ + QHLP L RR+D + +R A R GR Sbjct: 72 KPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGR 111
>VGLB_BHV2B (P12641) Glycoprotein B-1 precursor| Length = 917 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Frame = -2 Query: 166 PARSPPGTHRGC*TTA---SPTSTSW 98 PA S PG HRG TT +PT ++W Sbjct: 259 PAESAPGLHRGWHTTRLKNNPTGSAW 284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,534,499 Number of Sequences: 219361 Number of extensions: 491309 Number of successful extensions: 1972 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1971 length of database: 80,573,946 effective HSP length: 38 effective length of database: 72,238,228 effective search space used: 1733717472 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
