ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags28k09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104603.1| Zea mays PCO113315 mRNA sequence 125 5e-26
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 3e-21
3dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 109 3e-21
4dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 3e-21
5ref|NM_192544.1| Oryza sativa (japonica cultivar-group), predic... 107 1e-20
6gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 44 0.15
7ref|XM_482484.1| Oryza sativa (japonica cultivar-group), mRNA 38 9.3
8ref|XM_428538.1| PREDICTED: Gallus gallus similar to SH2-contain... 38 9.3
9gb|BC009143.1| Mus musculus trans-golgi network protein, mRNA (c... 38 9.3
10ref|NM_009443.3| Mus musculus trans-golgi network protein (Tgoln... 38 9.3
11gb|BC098512.1| Rattus norvegicus trans-golgi network protein 2, ... 38 9.3
12gb|AC125039.4| Mus musculus BAC clone RP23-335C3 from chromosome... 38 9.3
13emb|CT010269.1| Mus musculus full open reading frame cDNA clone ... 38 9.3
14gb|U13644.1| Caenorhabditis elegans cosmid F56D2, complete sequence 38 9.3
15ref|NM_138840.2| Rattus norvegicus trans-golgi network protein 2... 38 9.3
16emb|CR407567.2| Human DNA sequence from clone RP11-312O7 on chro... 38 9.3
17gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromo... 38 9.3
18emb|AL357493.8| Human DNA sequence from clone RP11-439A17 on chr... 38 9.3
19emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chr... 38 9.3
20emb|AL353689.26| Human DNA sequence from clone RP5-1087E8 on chr... 38 9.3
21emb|AL109948.9|HSJ998N21 Human DNA sequence from clone RP5-998N2... 38 9.3
22gb|AF539831.1| Marine ascomycete SAP142 strain SAP142 laccase ge... 38 9.3
23gb|AF539830.1| Pleospora spartinae strain SAP146 laccase gene, p... 38 9.3
24emb|CR589922.3| Human DNA sequence from clone WI2-2158M6 on chro... 38 9.3
25dbj|AK133559.1| Mus musculus adult male pituitary gland cDNA, RI... 38 9.3
26dbj|AK145212.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cD... 38 9.3
27dbj|AK162574.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 38 9.3
28dbj|AK161242.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 9.3
29gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromo... 38 9.3
30dbj|AK076586.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 9.3
31ref|NM_065798.2| Caenorhabditis elegans F56D2.3 (F56D2.3) mRNA, ... 38 9.3
32dbj|AK041302.1| Mus musculus adult male aorta and vein cDNA, RIK... 38 9.3
33emb|AL109844.14|HSJ636L22 Human DNA sequence from clone RP4-636L... 38 9.3
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.3
35gb|AC004706.1|AC004706 Homo sapiens chromosome 17, clone hCIT.28... 38 9.3
36dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 9.3
37dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.3
38dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.3
39gb|U76881.1|SMU76881 San Miguel sea lion virus capsid protein pr... 38 9.3
40gb|AY107950.1| Zea mays PCO076023 mRNA sequence 38 9.3
41emb|X64600.1|RNTGN41 R.norvegicus mRNA for the trans Golgi netwo... 38 9.3
42emb|X53565.1|RNTGN38 Rat mRNA for trans-Golgi network integral m... 38 9.3
43gb|AE000512.1| Thermotoga maritima MSB8, complete genome 38 9.3
44ref|NM_009444.1| Mus musculus trans-golgi network protein 2 (Tgo... 38 9.3
45dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 38 9.3
46dbj|D50032.1|MUSTGN38B Mouse mRNA for TGN38B, complete cds 38 9.3
47dbj|D50031.1|MUSTGN38A Mouse mRNA for TGN38A, complete cds 38 9.3 
>gb|AY104603.1| Zea mays PCO113315 mRNA sequence
          Length = 1601

 Score =  125 bits (63), Expect = 5e-26
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                       
Query: 102 gatgtactcgtgggagatgctgtcgttcaacatccacgatgggttcctggaggcgatcgt 161
           |||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 216 gatgtacgggtgggagatgctgtcgttcaacatacacgatgggttcctggaggccatcgt 275

                                      
Query: 162 gcgggggaaccgctcgggactcctcac 188
           |||||| ||||||||||| ||||||||
Sbjct: 276 gcggggcaaccgctcgggcctcctcac 302
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 3e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 102      gatgtactcgtgggagatgctgtcgttcaacatccacgatgggttcctggaggcgatcgt 161
                |||||||  |||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 22855713 gatgtacgggtgggagatgctctcgttcaacatccacgacggcttcctggaggccatcgt 22855654

                                           
Query: 162      gcgggggaaccgctcgggactcctcac 188
                |||||||||||| ||||| ||||||||
Sbjct: 22855653 gcgggggaaccggtcgggcctcctcac 22855627
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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score =  109 bits (55), Expect = 3e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                         
Query: 102   gatgtactcgtgggagatgctgtcgttcaacatccacgatgggttcctggaggcgatcgt 161
             |||||||  |||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 59270 gatgtacgggtgggagatgctctcgttcaacatccacgacggcttcctggaggccatcgt 59211

                                        
Query: 162   gcgggggaaccgctcgggactcctcac 188
             |||||||||||| ||||| ||||||||
Sbjct: 59210 gcgggggaaccggtcgggcctcctcac 59184
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>dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full
           insert sequence
          Length = 1556

 Score =  109 bits (55), Expect = 3e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                       
Query: 102 gatgtactcgtgggagatgctgtcgttcaacatccacgatgggttcctggaggcgatcgt 161
           |||||||  |||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 116 gatgtacgggtgggagatgctctcgttcaacatccacgacggcttcctggaggccatcgt 175

                                      
Query: 162 gcgggggaaccgctcgggactcctcac 188
           |||||||||||| ||||| ||||||||
Sbjct: 176 gcgggggaaccggtcgggcctcctcac 202
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>ref|NM_192544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  107 bits (54), Expect = 1e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                       
Query: 111 gtgggagatgctgtcgttcaacatccacgatgggttcctggaggcgatcgtgcgggggaa 170
           |||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 9   gtgggagatgctctcgttcaacatccacgacggcttcctggaggccatcgtgcgggggaa 68

                             
Query: 171 ccgctcgggactcctcac 188
           ||| ||||| ||||||||
Sbjct: 69  ccggtcgggcctcctcac 86
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>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH097M21, complete sequence
          Length = 131063

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 125   cgttcaacatccacgatgggttcctggaggcgatcgtg 162
             |||||||||||||||  || | ||||||||||||||||
Sbjct: 98528 cgttcaacatccacggcggatacctggaggcgatcgtg 98491
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>ref|XM_482484.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1278

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 1   tccaccgcatccgcngggcgcg 22
           |||||||||||||| |||||||
Sbjct: 808 tccaccgcatccgcggggcgcg 787
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>ref|XM_428538.1| PREDICTED: Gallus gallus similar to SH2-containing inositol
           phosphatase 2 (LOC430988), partial mRNA
          Length = 638

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 105 gtactcgtgggagatgctg 123
           |||||||||||||||||||
Sbjct: 534 gtactcgtgggagatgctg 516
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>gb|BC009143.1| Mus musculus trans-golgi network protein, mRNA (cDNA clone
           MGC:11627 IMAGE:3157708), complete cds
          Length = 1704

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 806 ccttcctccagtgagaaccaaga 828
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>ref|NM_009443.3| Mus musculus trans-golgi network protein (Tgoln1), mRNA
          Length = 5025

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 81   ccttcctccggtgagaaccaaga 103
            ||||||||| |||||||||||||
Sbjct: 1071 ccttcctccagtgagaaccaaga 1093
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>gb|BC098512.1| Rattus norvegicus trans-golgi network protein 2, mRNA (cDNA clone
           MGC:108592 IMAGE:7382894), complete cds
          Length = 4744

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 818 ccttcctccagtgagaaccaaga 840
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>gb|AC125039.4| Mus musculus BAC clone RP23-335C3 from chromosome 6, complete sequence
          Length = 222535

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 81    ccttcctccggtgagaaccaaga 103
             ||||||||| |||||||||||||
Sbjct: 91072 ccttcctccagtgagaaccaaga 91050
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>emb|CT010269.1| Mus musculus full open reading frame cDNA clone RZPDo836F1051D for
           gene Tgoln1, Trans-golgi network protein; complete cds,
           incl. stopcodon
          Length = 1062

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 793 ccttcctccagtgagaaccaaga 815
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>gb|U13644.1| Caenorhabditis elegans cosmid F56D2, complete sequence
          Length = 19383

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   gcctcccgatccccctcgc 68
            |||||||||||||||||||
Sbjct: 6426 gcctcccgatccccctcgc 6444
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>ref|NM_138840.2| Rattus norvegicus trans-golgi network protein 2 (Tgoln2), mRNA
          Length = 4744

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 818 ccttcctccagtgagaaccaaga 840
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>emb|CR407567.2| Human DNA sequence from clone RP11-312O7 on chromosome 1 Contains a
             novel gene (MGC57827) and a CpG island, complete sequence
          Length = 90590

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    gatccccctcgcctcggcc 75
             |||||||||||||||||||
Sbjct: 79876 gatccccctcgcctcggcc 79858
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>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete
              sequence
          Length = 169508

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 134    tccacgatgggttcctgga 152
              |||||||||||||||||||
Sbjct: 132402 tccacgatgggttcctgga 132384
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>emb|AL357493.8| Human DNA sequence from clone RP11-439A17 on chromosome 1 Contains four
              novel genes, a novel gene (MGC57827), a ribosomal protein
              L22 (RPL22) pseudogene, a histone 2 H3c (HIST2H3C)
              pseudogene, the HIST2H2BB gene for histone 2 H2bb, the
              FCGR1B gene for Fc fragment of IgG high affinity Ib
              receptor for (CD64) and three CpG islands, complete
              sequence
          Length = 189539

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     gatccccctcgcctcggcc 75
              |||||||||||||||||||
Sbjct: 105962 gatccccctcgcctcggcc 105944
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>emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chromosome 13 Contains part
             of the ATP11A gene for ATPase Class VI type 11A (ATPIH
             ATPIS KIAA1021), a novel gene and four CpG islands,
             complete sequence
          Length = 143517

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 134   tccacgatgggttcctgga 152
             |||||||||||||||||||
Sbjct: 85194 tccacgatgggttcctgga 85176
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>emb|AL353689.26| Human DNA sequence from clone RP5-1087E8 on chromosome 1q42.11-42.2
              Contains the CABC1 gene for chaperone ABC1 activity of bc1
              complex like (S. pombe), a pseudogene similar to part of
              NADH dehydrogenase subunit 6 (ND6), a novel gene, the 3'
              end of the CDC42BPA gene for CDC42 binding protein kinase
              alpha (DMPK-like) and two CpG islands, complete sequence
          Length = 195829

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     atctgcagctagctgcctc 54
              |||||||||||||||||||
Sbjct: 155066 atctgcagctagctgcctc 155048
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>emb|AL109948.9|HSJ998N21 Human DNA sequence from clone RP5-998N21 on chromosome 1 Contains a
              ubiquitin-conjugating enzyme HBUCE1 pseudogene, the FCGR1C
              gene for Fc fragment of IgG high affinity Ic receptor for
              (CD64), two novel genes, the HIST2H2BA gene for histone 2
              H2ba, the gene for a novel protein similar to histone 2 H3c
              (HIST2H3C), a novel gene, a ribosomal protein L22 (RPL22)
              pseudogene, a novel gene and three CpG islands, complete
              sequence
          Length = 129426

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     gatccccctcgcctcggcc 75
              |||||||||||||||||||
Sbjct: 122206 gatccccctcgcctcggcc 122224
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>gb|AF539831.1| Marine ascomycete SAP142 strain SAP142 laccase gene, partial cds
          Length = 927

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                      
Query: 117 gatgctgtcgttcaacatccacgatgg 143
           ||||||||| |||||||||||||||||
Sbjct: 599 gatgctgtc-ttcaacatccacgatgg 574
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>gb|AF539830.1| Pleospora spartinae strain SAP146 laccase gene, partial cds
          Length = 925

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                      
Query: 117 gatgctgtcgttcaacatccacgatgg 143
           ||||||||| |||||||||||||||||
Sbjct: 597 gatgctgtc-ttcaacatccacgatgg 572
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>emb|CR589922.3| Human DNA sequence from clone WI2-2158M6 on chromosome 1, complete
             sequence
          Length = 43380

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    gatccccctcgcctcggcc 75
             |||||||||||||||||||
Sbjct: 35176 gatccccctcgcctcggcc 35158
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>dbj|AK133559.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
           enriched library, clone:5330402M17 product:Trans-Golgi
           network integral membrane protein 1 precursor (TGN38A),
           full insert sequence
          Length = 2895

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 819 ccttcctccagtgagaaccaaga 841
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>dbj|AK145212.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN
           full-length enriched library, clone:G930020M22
           product:Trans-Golgi network integral membrane protein 2
           precursor (TGN38B), full insert sequence
          Length = 1701

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 836 ccttcctccagtgagaaccaaga 858
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>dbj|AK162574.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630019P09 product:Trans-Golgi
           network integral membrane protein 1 precursor (TGN38A),
           full insert sequence
          Length = 1993

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 821 ccttcctccagtgagaaccaaga 843
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>dbj|AK161242.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921505F24 product:Trans-Golgi network
           integral membrane protein 1 precursor (TGN38A), full
           insert sequence
          Length = 4767

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 804 ccttcctccagtgagaaccaaga 826
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>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete
             sequence
          Length = 218767

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 134   tccacgatgggttcctgga 152
             |||||||||||||||||||
Sbjct: 64426 tccacgatgggttcctgga 64444
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>dbj|AK076586.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921524L19 product:Trans-Golgi network
            integral membrane protein 1 precursor (TGN38A), full
            insert sequence
          Length = 2972

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 81   ccttcctccggtgagaaccaaga 103
            ||||||||| |||||||||||||
Sbjct: 1072 ccttcctccagtgagaaccaaga 1094
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>ref|NM_065798.2| Caenorhabditis elegans F56D2.3 (F56D2.3) mRNA, complete cds
          Length = 1432

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  gcctcccgatccccctcgc 68
           |||||||||||||||||||
Sbjct: 289 gcctcccgatccccctcgc 307
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>dbj|AK041302.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530098D06 product:Trans-Golgi
           network integral membrane protein 1 precursor (TGN38A),
           full insert sequence
          Length = 2250

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 821 ccttcctccagtgagaaccaaga 843
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>emb|AL109844.14|HSJ636L22 Human DNA sequence from clone RP4-636L22 on chromosome 1, complete
              sequence
          Length = 136815

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     gatccccctcgcctcggcc 75
              |||||||||||||||||||
Sbjct: 108803 gatccccctcgcctcggcc 108785
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                      
Query: 1        tccaccgcatccgcngggcgcg 22
                |||||||||||||| |||||||
Sbjct: 20522266 tccaccgcatccgcggggcgcg 20522245
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>gb|AC004706.1|AC004706 Homo sapiens chromosome 17, clone hCIT.281_F_24, complete sequence
          Length = 125638

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ctgcagctagctgcctccc 56
             |||||||||||||||||||
Sbjct: 82061 ctgcagctagctgcctccc 82079
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 148     ctggaggcgatcgtgcggg 166
               |||||||||||||||||||
Sbjct: 4257403 ctggaggcgatcgtgcggg 4257421
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>dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0032E15
          Length = 120419

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     tccaccgcatccgcngggcgcg 22
             |||||||||||||| |||||||
Sbjct: 26227 tccaccgcatccgcggggcgcg 26206
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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0456B03
          Length = 152973

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 1      tccaccgcatccgcngggcgcg 22
              |||||||||||||| |||||||
Sbjct: 152896 tccaccgcatccgcggggcgcg 152875
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>gb|U76881.1|SMU76881 San Miguel sea lion virus capsid protein precursor mRNA, partial
           cds
          Length = 564

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 121 ctgtcgttcaacatccacgatgg 143
           |||||||||||||||||| ||||
Sbjct: 31  ctgtcgttcaacatccactatgg 53
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>gb|AY107950.1| Zea mays PCO076023 mRNA sequence
          Length = 1046

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 44 ctagctgcctcccgatccc 62
          |||||||||||||||||||
Sbjct: 25 ctagctgcctcccgatccc 43
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>emb|X64600.1|RNTGN41 R.norvegicus mRNA for the trans Golgi network specific integral
           membrane protein TGN41
          Length = 1200

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 816 ccttcctccagtgagaaccaaga 838
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>emb|X53565.1|RNTGN38 Rat mRNA for trans-Golgi network integral membrane protein TGN38
          Length = 2750

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 816 ccttcctccagtgagaaccaaga 838
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     gagatccttcctccggtga 94
              |||||||||||||||||||
Sbjct: 603344 gagatccttcctccggtga 603326
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>ref|NM_009444.1| Mus musculus trans-golgi network protein 2 (Tgoln2), mRNA
          Length = 2265

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 849 ccttcctccagtgagaaccaaga 871
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 148     ctggaggcgatcgtgcggg 166
               |||||||||||||||||||
Sbjct: 2634279 ctggaggcgatcgtgcggg 2634261
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>dbj|D50032.1|MUSTGN38B Mouse mRNA for TGN38B, complete cds
          Length = 2265

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 849 ccttcctccagtgagaaccaaga 871
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>dbj|D50031.1|MUSTGN38A Mouse mRNA for TGN38A, complete cds
          Length = 1673

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 81  ccttcctccggtgagaaccaaga 103
           ||||||||| |||||||||||||
Sbjct: 819 ccttcctccagtgagaaccaaga 841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,213,003
Number of Sequences: 3902068
Number of extensions: 1213003
Number of successful extensions: 54222
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 53963
Number of HSP's gapped (non-prelim): 261
length of query: 188
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 166
effective length of database: 17,147,199,772
effective search space: 2846435162152
effective search space used: 2846435162152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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