ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags28h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 756 Score = 287 bits (145), Expect = 1e-74 Identities = 255/292 (87%) Strand = Plus / Plus Query: 1 gctgtctgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctggcccgcatcca 60 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 123 gctgtccgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctcgcccgcctcca 182 Query: 61 catgctcaccatctccaaccgcctcaagaactacggcctgaggtacgacgacctgtacga 120 ||||| | |||||| |||||| ||| |||||||||||||||||||| |||||||| Sbjct: 183 catgcaggcgatctcctcgcgcctccggaaatacggcctgaggtacgacgatctgtacga 242 Query: 121 cccctacttcgatctggacatcaaggaggcgctcaccaggctgccccgggaggtggtcga 180 ||| | |||||||||||||||||||||||| ||||| ||| ||||||||||||| Sbjct: 243 cccgaagcatgatctggacatcaaggaggcgctcgagaggcttcccagggaggtggtcga 302 Query: 181 cgcccgccaccagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctccc 240 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 303 cgcccgccaccagcgcctcaagcgcgccatggacctctccatgaagcaccagtacctctc 362 Query: 241 cgacgacgtccgggcactgcagacaccattcaaaagctatttgagcgacatg 292 ||| ||| || ||| | ||||||||||||| | |||||||||| |||||| Sbjct: 363 cgaaaacgaccaggcgcaacagacaccattcagaggctatttgagtgacatg 414
>dbj|AK121708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075L07, full insert sequence Length = 738 Score = 287 bits (145), Expect = 1e-74 Identities = 255/292 (87%) Strand = Plus / Plus Query: 1 gctgtctgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctggcccgcatcca 60 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 112 gctgtccgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctcgcccgcctcca 171 Query: 61 catgctcaccatctccaaccgcctcaagaactacggcctgaggtacgacgacctgtacga 120 ||||| | |||||| |||||| ||| |||||||||||||||||||| |||||||| Sbjct: 172 catgcaggcgatctcctcgcgcctccggaaatacggcctgaggtacgacgatctgtacga 231 Query: 121 cccctacttcgatctggacatcaaggaggcgctcaccaggctgccccgggaggtggtcga 180 ||| | |||||||||||||||||||||||| ||||| ||| ||||||||||||| Sbjct: 232 cccgaagcatgatctggacatcaaggaggcgctcgagaggcttcccagggaggtggtcga 291 Query: 181 cgcccgccaccagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctccc 240 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 292 cgcccgccaccagcgcctcaagcgcgccatggacctctccatgaagcaccagtacctctc 351 Query: 241 cgacgacgtccgggcactgcagacaccattcaaaagctatttgagcgacatg 292 ||| ||| || ||| | ||||||||||||| | |||||||||| |||||| Sbjct: 352 cgaaaacgaccaggcgcaacagacaccattcagaggctatttgagtgacatg 403
>gb|AY108905.1| Zea mays PCO141867 mRNA sequence Length = 770 Score = 274 bits (138), Expect = 2e-70 Identities = 239/273 (87%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatgctcaccatctccaaccgcctc 85 ||||||||||||||||||||||| || ||| ||||||||| |||| ||||| |||||| Sbjct: 138 gtgaacccgcgccgcaacccgctcgcgcgcctccacatgcacaccgtctcctcgcgcctc 197 Query: 86 aagaactacggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaag 145 | ||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 198 aggaaatacgggctgaggtacgatgacctgtacgacccctacttcgacctggacatcaag 257 Query: 146 gaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgc 205 ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 258 gaggcgctcgggaggctgcctagggaggtggtcgacgcccgcatccagcgcctcaagcgc 317 Query: 206 gccatggacctntccatgaagcaccagtacctccccgacgacgtccgggcactgcagaca 265 ||||||||||| ||||||||||| |||||||||||||| ||| ||| ||||| |||| Sbjct: 318 gccatggacctctccatgaagcatcagtacctccccgaggacctccaggcacagcaggtc 377 Query: 266 ccattcaaaagctatttgagcgacatgctggct 298 ||||||| | | |||||||| |||||| ||||| Sbjct: 378 ccattcagaggatatttgagtgacatgttggct 410
>gb|AY106237.1| Zea mays PCO141868 mRNA sequence Length = 814 Score = 268 bits (135), Expect = 9e-69 Identities = 236/270 (87%) Strand = Plus / Plus Query: 28 gaacccgcgccgcaacccgctggcccgcatccacatgctcaccatctccaaccgcctcaa 87 |||||||||||||||||||||||| ||| ||||||||| | || ||||| ||||||| Sbjct: 184 gaacccgcgccgcaacccgctggcgcgcctccacatgcacgccgtctcctcgcgcctcag 243 Query: 88 gaactacggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaagga 147 ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 244 gaaatacggactgaggtacgacgacctctacgacccctacttcgatctggacatcaagga 303 Query: 148 ggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgc 207 ||||||| |||||||| |||||||||||||||||||| ||||||||||||||| || Sbjct: 304 ggcgctcggtaggctgcctagggaggtggtcgacgcccgcatccagcgcctcaagcgtgc 363 Query: 208 catggacctntccatgaagcaccagtacctccccgacgacgtccgggcactgcagacacc 267 ||||||||| ||||||||||||||||||||||| || ||| ||| ||||| |||| || Sbjct: 364 catggacctctccatgaagcaccagtacctcccggaggacctccaggcacagcaggttcc 423 Query: 268 attcaaaagctatttgagcgacatgctggc 297 ||||| | | |||||||| |||||| |||| Sbjct: 424 attcagaggatatttgagtgacatgttggc 453
>dbj|AK121368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125I03, full insert sequence Length = 703 Score = 194 bits (98), Expect = 1e-46 Identities = 187/217 (86%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatgctcaccatctccaaccgcctc 85 ||||||||||| || ||||||||||||||| |||||||| | || || || ||||||| Sbjct: 87 gtgaacccgcggcggaacccgctggcccgcctccacatgaacgccgtcgcctcccgcctc 146 Query: 86 aagaactacggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaag 145 || ||||| || |||||||||||||||||||||||||| ||| || ||||||||| Sbjct: 147 cgcaaatacgggctccggtacgacgacctgtacgacccctaccacgacctcgacatcaag 206 Query: 146 gaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgc 205 ||||| || | ||||||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct: 207 gaggccctggcgcggctgccgcgggaggtggtggacgcccgcaaccagcgcctcaagcgc 266 Query: 206 gccatggacctntccatgaagcaccagtacctccccg 242 ||||||||||| ||||||||||||||||||||||||| Sbjct: 267 gccatggacctctccatgaagcaccagtacctccccg 303
>dbj|AK103963.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F05, full insert sequence Length = 601 Score = 194 bits (98), Expect = 1e-46 Identities = 187/217 (86%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatgctcaccatctccaaccgcctc 85 ||||||||||| || ||||||||||||||| |||||||| | || || || ||||||| Sbjct: 119 gtgaacccgcggcggaacccgctggcccgcctccacatgaacgccgtcgcctcccgcctc 178 Query: 86 aagaactacggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaag 145 || ||||| || |||||||||||||||||||||||||| ||| || ||||||||| Sbjct: 179 cgcaaatacgggctccggtacgacgacctgtacgacccctaccacgacctcgacatcaag 238 Query: 146 gaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgc 205 ||||| || | ||||||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct: 239 gaggccctggcgcggctgccgcgggaggtggtggacgcccgcaaccagcgcctcaagcgc 298 Query: 206 gccatggacctntccatgaagcaccagtacctccccg 242 ||||||||||| ||||||||||||||||||||||||| Sbjct: 299 gccatggacctctccatgaagcaccagtacctccccg 335
>dbj|AK072032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105M20, full insert sequence Length = 1682 Score = 194 bits (98), Expect = 1e-46 Identities = 187/217 (86%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatgctcaccatctccaaccgcctc 85 ||||||||||| || ||||||||||||||| |||||||| | || || || ||||||| Sbjct: 1177 gtgaacccgcggcggaacccgctggcccgcctccacatgaacgccgtcgcctcccgcctc 1236 Query: 86 aagaactacggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaag 145 || ||||| || |||||||||||||||||||||||||| ||| || ||||||||| Sbjct: 1237 cgcaaatacgggctccggtacgacgacctgtacgacccctaccacgacctcgacatcaag 1296 Query: 146 gaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgc 205 ||||| || | ||||||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct: 1297 gaggccctggcgcggctgccgcgggaggtggtggacgcccgcaaccagcgcctcaagcgc 1356 Query: 206 gccatggacctntccatgaagcaccagtacctccccg 242 ||||||||||| ||||||||||||||||||||||||| Sbjct: 1357 gccatggacctctccatgaagcaccagtacctccccg 1393
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 186 bits (94), Expect = 3e-44 Identities = 135/149 (90%) Strand = Plus / Plus Query: 95 ggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaaggaggcgctc 154 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 33414963 ggcctgaggtacgacgatctgtacgacccgaagcatgatctggacatcaaggaggcgctc 33415022 Query: 155 accaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggac 214 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33415023 gagaggcttcccagggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggac 33415082 Query: 215 ctntccatgaagcaccagtacctccccga 243 || ||||||||||||||||||||| |||| Sbjct: 33415083 ctctccatgaagcaccagtacctctccga 33415111 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Plus Query: 1 gctgtctgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctggcccgcatcca 60 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 33414743 gctgtccgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctcgcccgcctcca 33414802 Query: 61 catgc 65 ||||| Sbjct: 33414803 catgc 33414807 Score = 42.1 bits (21), Expect = 1.00 Identities = 30/33 (90%) Strand = Plus / Plus Query: 260 cagacaccattcaaaagctatttgagcgacatg 292 ||||||||||||| | |||||||||| |||||| Sbjct: 33415623 cagacaccattcagaggctatttgagtgacatg 33415655
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 186 bits (94), Expect = 3e-44 Identities = 135/149 (90%) Strand = Plus / Minus Query: 95 ggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaaggaggcgctc 154 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 83148 ggcctgaggtacgacgatctgtacgacccgaagcatgatctggacatcaaggaggcgctc 83089 Query: 155 accaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggac 214 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83088 gagaggcttcccagggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggac 83029 Query: 215 ctntccatgaagcaccagtacctccccga 243 || ||||||||||||||||||||| |||| Sbjct: 83028 ctctccatgaagcaccagtacctctccga 83000 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 1 gctgtctgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctggcccgcatcca 60 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 83368 gctgtccgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctcgcccgcctcca 83309 Query: 61 catgc 65 ||||| Sbjct: 83308 catgc 83304 Score = 42.1 bits (21), Expect = 1.00 Identities = 30/33 (90%) Strand = Plus / Minus Query: 260 cagacaccattcaaaagctatttgagcgacatg 292 ||||||||||||| | |||||||||| |||||| Sbjct: 82488 cagacaccattcagaggctatttgagtgacatg 82456
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 186 bits (94), Expect = 3e-44 Identities = 135/149 (90%) Strand = Plus / Plus Query: 95 ggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaaggaggcgctc 154 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 33505473 ggcctgaggtacgacgatctgtacgacccgaagcatgatctggacatcaaggaggcgctc 33505532 Query: 155 accaggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggac 214 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33505533 gagaggcttcccagggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggac 33505592 Query: 215 ctntccatgaagcaccagtacctccccga 243 || ||||||||||||||||||||| |||| Sbjct: 33505593 ctctccatgaagcaccagtacctctccga 33505621 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Plus Query: 1 gctgtctgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctggcccgcatcca 60 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 33505253 gctgtccgcgttctcgcagtggttcgtgaacccgcgccgcaacccgctcgcccgcctcca 33505312 Query: 61 catgc 65 ||||| Sbjct: 33505313 catgc 33505317 Score = 42.1 bits (21), Expect = 1.00 Identities = 30/33 (90%) Strand = Plus / Plus Query: 260 cagacaccattcaaaagctatttgagcgacatg 292 ||||||||||||| | |||||||||| |||||| Sbjct: 33506133 cagacaccattcagaggctatttgagtgacatg 33506165
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 178 bits (90), Expect = 7e-42 Identities = 128/141 (90%) Strand = Plus / Plus Query: 102 ggtacgacgacctgtacgacccctacttcgatctggacatcaaggaggcgctcaccaggc 161 |||||||||||||||||||||||||| ||| || |||||||||||||| || | ||| Sbjct: 5687472 ggtacgacgacctgtacgacccctaccacgacctcgacatcaaggaggccctggcgcggc 5687531 Query: 162 tgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggacctntcca 221 |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 5687532 tgccgcgggaggtggtggacgcccgcaaccagcgcctcaagcgcgccatggacctctcca 5687591 Query: 222 tgaagcaccagtacctccccg 242 ||||||||||||||||||||| Sbjct: 5687592 tgaagcaccagtacctccccg 5687612 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatg 64 ||||||||||| || ||||||||||||||| |||||||| Sbjct: 5687296 gtgaacccgcggcggaacccgctggcccgcctccacatg 5687334
>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0431A02 Length = 165038 Score = 178 bits (90), Expect = 7e-42 Identities = 128/141 (90%) Strand = Plus / Plus Query: 102 ggtacgacgacctgtacgacccctacttcgatctggacatcaaggaggcgctcaccaggc 161 |||||||||||||||||||||||||| ||| || |||||||||||||| || | ||| Sbjct: 149164 ggtacgacgacctgtacgacccctaccacgacctcgacatcaaggaggccctggcgcggc 149223 Query: 162 tgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgccatggacctntcca 221 |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 149224 tgccgcgggaggtggtggacgcccgcaaccagcgcctcaagcgcgccatggacctctcca 149283 Query: 222 tgaagcaccagtacctccccg 242 ||||||||||||||||||||| Sbjct: 149284 tgaagcaccagtacctccccg 149304 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatg 64 ||||||||||| || ||||||||||||||| |||||||| Sbjct: 148988 gtgaacccgcggcggaacccgctggcccgcctccacatg 149026
>gb|AY112308.1| Zea mays CL21213_1 mRNA sequence Length = 557 Score = 141 bits (71), Expect = 1e-30 Identities = 156/182 (85%), Gaps = 2/182 (1%) Strand = Plus / Minus Query: 92 tacggcctgaggtacgacgacctgtacgacccctacttcgatctggacatcaaggaggcg 151 ||||| || ||||| |||||||| |||||||| ||| ||| || |||||||||| |||| Sbjct: 423 tacgggctcaggtatgacgacctctacgacccgtaccacgacctagacatcaagg-ggcg 365 Query: 152 ctcac-caggctgccccgggaggtggtcgacgcccgccaccagcgcctcaagcgcgccat 210 || | | ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| Sbjct: 364 ctggcncgggctgccgcgggaggtggtggacgcccgtaaccagcgcctcaagcgggccat 305 Query: 211 ggacctntccatgaagcaccagtacctccccgacgacgtccgggcactgcagacaccatt 270 |||||| |||||||||||||||||||| ||||||||||||| ||| | ||||| ||||| Sbjct: 304 ggacctctccatgaagcaccagtacctacccgacgacgtccaggctatacagacgccatt 245 Query: 271 ca 272 || Sbjct: 244 ca 243
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 109 bits (55), Expect = 5e-21 Identities = 93/106 (87%) Strand = Plus / Plus Query: 137 gacatcaaggaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgc 196 |||||||||||||| || | ||||||| ||||||||||| ||||||| | ||||||| Sbjct: 8949726 gacatcaaggaggccctggcgcggctgccgcgggaggtggtggacgcccacaaccagcgg 8949785 Query: 197 ctcaagcgcgccatggacctntccatgaagcaccagtacctccccg 242 ||||||||| |||||||||| |||| |||||||||||||||||||| Sbjct: 8949786 ctcaagcgcaccatggacctctccacgaagcaccagtacctccccg 8949831 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatg 64 ||||||| ||| ||||||||||||||||| |||||||| Sbjct: 8949527 gtgaacctgcgacgcaacccgctggcccgtctccacatg 8949565
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 109 bits (55), Expect = 5e-21 Identities = 93/106 (87%) Strand = Plus / Plus Query: 137 gacatcaaggaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgc 196 |||||||||||||| || | ||||||| ||||||||||| ||||||| | ||||||| Sbjct: 51388 gacatcaaggaggccctggcgcggctgccgcgggaggtggtggacgcccacaaccagcgg 51447 Query: 197 ctcaagcgcgccatggacctntccatgaagcaccagtacctccccg 242 ||||||||| |||||||||| |||| |||||||||||||||||||| Sbjct: 51448 ctcaagcgcaccatggacctctccacgaagcaccagtacctccccg 51493 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Plus Query: 26 gtgaacccgcgccgcaacccgctggcccgcatccacatg 64 ||||||| ||| ||||||||||||||||| |||||||| Sbjct: 51189 gtgaacctgcgacgcaacccgctggcccgtctccacatg 51227
>dbj|AK066263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059A14, full insert sequence Length = 1986 Score = 109 bits (55), Expect = 5e-21 Identities = 93/106 (87%) Strand = Plus / Plus Query: 137 gacatcaaggaggcgctcaccaggctgccccgggaggtggtcgacgcccgccaccagcgc 196 |||||||||||||| || | ||||||| ||||||||||| ||||||| | ||||||| Sbjct: 713 gacatcaaggaggccctggcgcggctgccgcgggaggtggtggacgcccacaaccagcgg 772 Query: 197 ctcaagcgcgccatggacctntccatgaagcaccagtacctccccg 242 ||||||||| |||||||||| |||| |||||||||||||||||||| Sbjct: 773 ctcaagcgcaccatggacctctccacgaagcaccagtacctccccg 818 Score = 40.1 bits (20), Expect = 3.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 29 aacccgcgccgcaacccgctggcccgcatccacatg 64 |||| ||| ||||||||||||||||| |||||||| Sbjct: 599 aacctgcgacgcaacccgctggcccgtctccacatg 634
>dbj|AB077108.1| Prunus persica mRNA, microsatellite marker M3b Length = 611 Score = 79.8 bits (40), Expect = 5e-12 Identities = 51/55 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctccccga 243 ||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||| Sbjct: 249 accagcgtctcaagcgcgccatggacctctccatgaagcacgagtaccttcccga 303 Score = 50.1 bits (25), Expect = 0.004 Identities = 41/47 (87%) Strand = Plus / Plus Query: 104 tacgacgacctgtacgacccctacttcgatctggacatcaaggaggc 150 |||||||| ||| |||| ||||||| |||| ||||||||||||||| Sbjct: 164 tacgacgatctgnacgatccctactacgattnggacatcaaggaggc 210
>ref|NM_179153.1| Arabidopsis thaliana ubiquinol-cytochrome-c reductase AT4G32470 transcript variant AT4G32470.2 mRNA, complete cds Length = 891 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 287 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 339
>ref|NM_119399.2| Arabidopsis thaliana ubiquinol-cytochrome-c reductase AT4G32470 transcript variant AT4G32470.1 mRNA, complete cds Length = 890 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 287 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 339
>gb|AF339695.1| Arabidopsis thaliana putative ubiquinol-cytochrome c reductase (At4g32470) mRNA, complete cds Length = 419 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 188 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 240
>gb|AF326874.1| Arabidopsis thaliana putative ubiquinol-cytochrome c reductase (At4g32470) mRNA, complete cds Length = 682 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 263 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 315
>emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77 Length = 197252 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Minus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 84806 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 84754
>emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4, BAC clone F8B4 (ESSA project) Length = 93257 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Minus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 71089 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 71037
>gb|AF361839.1| Arabidopsis thaliana AT4g32470/F8B4_170 mRNA, complete cds Length = 666 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 263 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 315
>gb|AY066050.1| Arabidopsis thaliana AT4g32470/F8B4_170 mRNA, complete cds Length = 369 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 188 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 240
>gb|AF324709.2|AF324709 Arabidopsis thaliana AT4g32470 (AT4g32470/F8B4_170) mRNA, complete cds Length = 666 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 263 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 315
>emb|BX828689.1|CNS0A4IX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL2ZE02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 621 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 241 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 293
>gb|AY087333.1| Arabidopsis thaliana clone 34310 mRNA, complete sequence Length = 688 Score = 75.8 bits (38), Expect = 7e-11 Identities = 49/53 (92%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctcccc 241 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct: 288 accagcgtctcaagcgtgccatggacctctccatgaagcacgagtacctcccc 340
>emb|X79276.1|STCR14 S.tuberosum (Desiree) cr14 mRNA Length = 662 Score = 65.9 bits (33), Expect = 7e-08 Identities = 47/52 (90%) Strand = Plus / Plus Query: 189 accagcgcctcaagcgcgccatggacctntccatgaagcaccagtacctccc 240 |||||||||| ||| ||||||||||| ||||||||||||||||||||||| Sbjct: 212 accagcgccttctgcgtgccatggacctctccatgaagcaccagtacctccc 263
>ref|NM_001024442.1| Danio rerio zgc:109893 (zgc:109893), mRNA Length = 488 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 cgcctcaagcgcgccatggacctntccatgaagcaccag 232 ||||||||| | |||||||| || ||||||||||||||| Sbjct: 208 cgcctcaagagagccatggatctttccatgaagcaccag 246
>ref|XM_690119.1| PREDICTED: Danio rerio similar to cohesin subunit Rad21 (LOC566831), mRNA Length = 2136 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 cgcctcaagcgcgccatggacctntccatgaagcaccag 232 ||||||||| | |||||||| || ||||||||||||||| Sbjct: 103 cgcctcaagagagccatggatctttccatgaagcaccag 141
>gb|BC095035.1| Danio rerio zgc:109893, mRNA (cDNA clone MGC:109893 IMAGE:7119360), complete cds Length = 488 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 cgcctcaagcgcgccatggacctntccatgaagcaccag 232 ||||||||| | |||||||| || ||||||||||||||| Sbjct: 208 cgcctcaagagagccatggatctttccatgaagcaccag 246
>emb|CR786578.9| Zebrafish DNA sequence from clone DKEY-231L1 in linkage group 19, complete sequence Length = 175254 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 cgcctcaagcgcgccatggacctntccatgaagcaccag 232 ||||||||| | |||||||| || ||||||||||||||| Sbjct: 25926 cgcctcaagagagccatggatctttccatgaagcaccag 25964
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cctcaagaactacggcctgag 102 ||||||||||||||||||||| Sbjct: 524708 cctcaagaactacggcctgag 524688
>gb|AF469049.1| Gallus gallus caspase-6 gene, complete cds Length = 18666 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 caggctgccccgggaggtggt 177 ||||||||||||||||||||| Sbjct: 8528 caggctgccccgggaggtggt 8548
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 acgcccgccaccagcgcctc 199 |||||||||||||||||||| Sbjct: 1567112 acgcccgccaccagcgcctc 1567131
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccgcaacccgctggcccgca 56 |||||||||||||||||||| Sbjct: 721481 ccgcaacccgctggcccgca 721500
>ref|XM_744444.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g04050) partial mRNA Length = 2388 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gaacccgcgccgcaacccgc 47 |||||||||||||||||||| Sbjct: 190 gaacccgcgccgcaacccgc 209
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccgcaacccgctggcccgca 56 |||||||||||||||||||| Sbjct: 35762 ccgcaacccgctggcccgca 35781
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccgcaacccgctggcccgca 56 |||||||||||||||||||| Sbjct: 54281 ccgcaacccgctggcccgca 54300
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gcctcaagcgcgccatggac 214 |||||||||||||||||||| Sbjct: 4049796 gcctcaagcgcgccatggac 4049815
>dbj|AP004717.1| Gallus gallus genomic DNA, chromosome 5, clone:161D9, complete sequence Length = 221022 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 caggctgccccgggaggtggtcga 180 |||||||||| ||||||||||||| Sbjct: 208540 caggctgcccagggaggtggtcga 208517
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gcctcaagcgcgccatggac 214 |||||||||||||||||||| Sbjct: 4052618 gcctcaagcgcgccatggac 4052637
>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete sequence Length = 237526 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 caggctgccccgggaggtggtcga 180 |||||||||| ||||||||||||| Sbjct: 119608 caggctgcccagggaggtggtcga 119585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,732,318 Number of Sequences: 3902068 Number of extensions: 1732318 Number of successful extensions: 34058 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33690 Number of HSP's gapped (non-prelim): 356 length of query: 301 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 279 effective length of database: 17,147,199,772 effective search space: 4784068736388 effective search space used: 4784068736388 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
