ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags28c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome... 232 1e-57
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 232 1e-57
3dbj|AK105629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
4dbj|AK072358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 232 1e-57
6gb|AY105330.1| Zea mays PCO100079 mRNA sequence 60 1e-05
7gb|AY109095.1| Zea mays PCO106166 mRNA sequence 56 2e-04
8ref|XM_493919.1| Oryza sativa (japonica cultivar-group), predic... 50 0.010
9gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome... 50 0.010
10gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 50 0.010
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
12dbj|AK121600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
13ref|NM_113593.2| Arabidopsis thaliana ubiquitin-protein ligase A... 44 0.64
14gb|BT010396.1| Arabidopsis thaliana At3g26830 mRNA, complete cds 44 0.64
15gb|AY062568.1| Arabidopsis thaliana transport inhibitor response... 44 0.64
16emb|BX823269.1|CNS0A7D0 Arabidopsis thaliana Full-length cDNA Co... 44 0.64
17ref|XM_578312.1| PREDICTED: Rattus norvegicus similar to monoclo... 44 0.64
18dbj|AB016889.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.64
19ref|XM_467902.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.5
20ref|XM_507533.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.5
21ref|XM_506986.2| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.5
22ref|XM_467901.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.5
23emb|AL139411.11| Human DNA sequence from clone RP11-222A5 on chr... 42 2.5
24emb|BX936438.22| Zebrafish DNA sequence from clone CH211-255D18 ... 42 2.5
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
26dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
27dbj|AK111900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
28dbj|AK111658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
29dbj|AK111630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
30dbj|AK111627.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
31dbj|AK100506.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
32dbj|AK073912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
33gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
34gb|DQ146364.1| Anopheles funestus mitochondrion, complete genome 40 9.9
35ref|XM_992160.1| PREDICTED: Mus musculus similar to Ig kappa cha... 40 9.9
36gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome... 40 9.9
37emb|AL357117.20| Human DNA sequence from clone RP11-436I24 on ch... 40 9.9
38gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
39dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
40gb|AC104065.3| Homo sapiens BAC clone RP11-140E17 from 4, comple... 40 9.9
41gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosom... 40 9.9
42gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, compl... 40 9.9
43emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chro... 40 9.9
44gb|AC115848.10| Mus musculus chromosome 3, clone RP24-248L23, co... 40 9.9
45gb|AF136711.1|AF136711 Amoeba proteus myosin heavy chain mRNA, c... 40 9.9
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9 
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0002A19, complete sequence
          Length = 139052

 Score =  232 bits (117), Expect = 1e-57
 Identities = 258/305 (84%)
 Strand = Plus / Minus

                                                                         
Query: 403   gtgacaggccagccactggatgagggttttggggcaattgtccggtcatgcaagggcctc 462
             |||||||| |||||| |||||||||||| ||||||||| || | ||||||||| ||||| 
Sbjct: 47186 gtgacagggcagccattggatgagggttatggggcaatcgtacagtcatgcaaaggcctt 47127

                                                                         
Query: 463   aggcgtctatctatgtctggccttctcacggacagcgtgttcctgtacatcggcatgtac 522
             || || |||| | ||||||| |||||||| ||||  |||||||| ||||| |||||||| 
Sbjct: 47126 agacggctatgtttgtctggacttctcacagacacagtgttcctctacattggcatgtat 47067

                                                                         
Query: 523   gctgagaggctggagacgctctctgttgcgtttgcaggagatagtgatgatggcatgatc 582
             |||||||||||||||| ||| ||||| || |||||||||||||  || |||||||||| |
Sbjct: 47066 gctgagaggctggagatgctttctgtagcatttgcaggagataccgacgatggcatgacc 47007

                                                                         
Query: 583   tacgtgctcaatggctgcaagaatctgaggaagctggagatgagaaactgcccgtttggc 642
             |||||||||||||||||||| ||||| | ||||||||| || ||  || | || ||||| 
Sbjct: 47006 tacgtgctcaatggctgcaaaaatctcaagaagctggaaatcagggacagtccttttggt 46947

                                                                         
Query: 643   gacacggcgcttcttgcaggcatgcacaggtacgaggcgatgcgctctctttggatgtcg 702
             ||||  ||||||||||||||||||||   ||||||||| |||||||| || ||| |||||
Sbjct: 46946 gacagcgcgcttcttgcaggcatgcatcagtacgaggcaatgcgctcactctggttgtcg 46887

                  
Query: 703   tcgtg 707
             |||||
Sbjct: 46886 tcgtg 46882



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 195/245 (79%), Gaps = 3/245 (1%)
 Strand = Plus / Minus

                                                                         
Query: 128   tagatcacattggcgatgcaggattgaaggttgtagcctcttgttgcctggagctgcaag 187
             ||||||||||||| |||| |||||||||  |||||||||| |  ||  |  |||| ||||
Sbjct: 47458 tagatcacattggtgatgaaggattgaaaattgtagcctcatcctgtatacagctccaag 47399

                                                                         
Query: 188   agttgagggtatttcctgcaaatgcagatgtgttagcaagcactgatgtgacagaggaag 247
             ||||||| ||||||||||| |||||| |||    |||||||||||   ||||||||||||
Sbjct: 47398 agttgagagtatttcctgcgaatgcaaatgccagagcaagcactg---tgacagaggaag 47342

                                                                         
Query: 248   ggctggttgcagtatcttcaggctgtcggaagctaagctctgttctctattcctgcagcc 307
             |||| |||||  ||||| ||||||||   ||| ||   ||||| |||||||  |||   |
Sbjct: 47341 ggctagttgccatatctgcaggctgtaacaagttacagtctgtgctctatttttgccaac 47282

                                                                         
Query: 308   gaatgactaattctgctctgattacggtggcaaagaattgctcgcgaatcacatccttca 367
             | ||||| || ||||| |||||||| || |||||||| ||| | ||| |||| |||||||
Sbjct: 47281 ggatgacaaactctgcactgattactgtcgcaaagaactgcccacgattcacgtccttca 47222

                  
Query: 368   gactg 372
             |||||
Sbjct: 47221 gactg 47217



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 20    tttgcaagaacctaacatgcttgaaccttagctatgctccaa 61
             |||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 48625 tttgcaagaatctaacgtgcttgaaccttagctctgctccaa 48584
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  232 bits (117), Expect = 1e-57
 Identities = 258/305 (84%)
 Strand = Plus / Minus

                                                                            
Query: 403      gtgacaggccagccactggatgagggttttggggcaattgtccggtcatgcaagggcctc 462
                |||||||| |||||| |||||||||||| ||||||||| || | ||||||||| ||||| 
Sbjct: 17886592 gtgacagggcagccattggatgagggttatggggcaatcgtacagtcatgcaaaggcctt 17886533

                                                                            
Query: 463      aggcgtctatctatgtctggccttctcacggacagcgtgttcctgtacatcggcatgtac 522
                || || |||| | ||||||| |||||||| ||||  |||||||| ||||| |||||||| 
Sbjct: 17886532 agacggctatgtttgtctggacttctcacagacacagtgttcctctacattggcatgtat 17886473

                                                                            
Query: 523      gctgagaggctggagacgctctctgttgcgtttgcaggagatagtgatgatggcatgatc 582
                |||||||||||||||| ||| ||||| || |||||||||||||  || |||||||||| |
Sbjct: 17886472 gctgagaggctggagatgctttctgtagcatttgcaggagataccgacgatggcatgacc 17886413

                                                                            
Query: 583      tacgtgctcaatggctgcaagaatctgaggaagctggagatgagaaactgcccgtttggc 642
                |||||||||||||||||||| ||||| | ||||||||| || ||  || | || ||||| 
Sbjct: 17886412 tacgtgctcaatggctgcaaaaatctcaagaagctggaaatcagggacagtccttttggt 17886353

                                                                            
Query: 643      gacacggcgcttcttgcaggcatgcacaggtacgaggcgatgcgctctctttggatgtcg 702
                ||||  ||||||||||||||||||||   ||||||||| |||||||| || ||| |||||
Sbjct: 17886352 gacagcgcgcttcttgcaggcatgcatcagtacgaggcaatgcgctcactctggttgtcg 17886293

                     
Query: 703      tcgtg 707
                |||||
Sbjct: 17886292 tcgtg 17886288



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 195/245 (79%), Gaps = 3/245 (1%)
 Strand = Plus / Minus

                                                                            
Query: 128      tagatcacattggcgatgcaggattgaaggttgtagcctcttgttgcctggagctgcaag 187
                ||||||||||||| |||| |||||||||  |||||||||| |  ||  |  |||| ||||
Sbjct: 17886864 tagatcacattggtgatgaaggattgaaaattgtagcctcatcctgtatacagctccaag 17886805

                                                                            
Query: 188      agttgagggtatttcctgcaaatgcagatgtgttagcaagcactgatgtgacagaggaag 247
                ||||||| ||||||||||| |||||| |||    |||||||||||   ||||||||||||
Sbjct: 17886804 agttgagagtatttcctgcgaatgcaaatgccagagcaagcactg---tgacagaggaag 17886748

                                                                            
Query: 248      ggctggttgcagtatcttcaggctgtcggaagctaagctctgttctctattcctgcagcc 307
                |||| |||||  ||||| ||||||||   ||| ||   ||||| |||||||  |||   |
Sbjct: 17886747 ggctagttgccatatctgcaggctgtaacaagttacagtctgtgctctatttttgccaac 17886688

                                                                            
Query: 308      gaatgactaattctgctctgattacggtggcaaagaattgctcgcgaatcacatccttca 367
                | ||||| || ||||| |||||||| || |||||||| ||| | ||| |||| |||||||
Sbjct: 17886687 ggatgacaaactctgcactgattactgtcgcaaagaactgcccacgattcacgtccttca 17886628

                     
Query: 368      gactg 372
                |||||
Sbjct: 17886627 gactg 17886623



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 20       tttgcaagaacctaacatgcttgaaccttagctatgctccaa 61
                |||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 17888031 tttgcaagaatctaacgtgcttgaaccttagctctgctccaa 17887990
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>dbj|AK105629.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D04, full
            insert sequence
          Length = 2170

 Score =  232 bits (117), Expect = 1e-57
 Identities = 258/305 (84%)
 Strand = Plus / Plus

                                                                        
Query: 403  gtgacaggccagccactggatgagggttttggggcaattgtccggtcatgcaagggcctc 462
            |||||||| |||||| |||||||||||| ||||||||| || | ||||||||| ||||| 
Sbjct: 1461 gtgacagggcagccattggatgagggttatggggcaatcgtacagtcatgcaaaggcctt 1520

                                                                        
Query: 463  aggcgtctatctatgtctggccttctcacggacagcgtgttcctgtacatcggcatgtac 522
            || || |||| | ||||||| |||||||| ||||  |||||||| ||||| |||||||| 
Sbjct: 1521 agacggctatgtttgtctggacttctcacagacacagtgttcctctacattggcatgtat 1580

                                                                        
Query: 523  gctgagaggctggagacgctctctgttgcgtttgcaggagatagtgatgatggcatgatc 582
            |||||||||||||||| ||| ||||| || |||||||||||||  || |||||||||| |
Sbjct: 1581 gctgagaggctggagatgctttctgtagcatttgcaggagataccgacgatggcatgacc 1640

                                                                        
Query: 583  tacgtgctcaatggctgcaagaatctgaggaagctggagatgagaaactgcccgtttggc 642
            |||||||||||||||||||| ||||| | ||||||||| || ||  || | || ||||| 
Sbjct: 1641 tacgtgctcaatggctgcaaaaatctcaagaagctggaaatcagggacagtccttttggt 1700

                                                                        
Query: 643  gacacggcgcttcttgcaggcatgcacaggtacgaggcgatgcgctctctttggatgtcg 702
            ||||  ||||||||||||||||||||   ||||||||| |||||||| || ||| |||||
Sbjct: 1701 gacagcgcgcttcttgcaggcatgcatcagtacgaggcaatgcgctcactctggttgtcg 1760

                 
Query: 703  tcgtg 707
            |||||
Sbjct: 1761 tcgtg 1765



 Score =  109 bits (55), Expect = 1e-20
 Identities = 279/353 (79%), Gaps = 3/353 (0%)
 Strand = Plus / Plus

                                                                        
Query: 20   tttgcaagaacctaacatgcttgaaccttagctatgctccaacgtttcagacagctgatc 79
            |||||||||| ||||| |||||||||||||||| |||||||| | |   ||  ||| |||
Sbjct: 1081 tttgcaagaatctaacgtgcttgaaccttagctctgctccaatggtcaggagtgcttatc 1140

                                                                        
Query: 80   ttattggagctattcgccattgtcagaatctccgacacttgtgggtactagatcacattg 139
            |||||| |  |||| | || ||  |||| |||| ||| ||||||||  ||||||||||||
Sbjct: 1141 ttattgaatttatttgtcaatgcaagaaactccaacaattgtgggtgttagatcacattg 1200

                                                                        
Query: 140  gcgatgcaggattgaaggttgtagcctcttgttgcctggagctgcaagagttgagggtat 199
            | |||| |||||||||  |||||||||| |  ||  |  |||| ||||||||||| ||||
Sbjct: 1201 gtgatgaaggattgaaaattgtagcctcatcctgtatacagctccaagagttgagagtat 1260

                                                                        
Query: 200  ttcctgcaaatgcagatgtgttagcaagcactgatgtgacagaggaagggctggttgcag 259
            ||||||| |||||| |||    |||||||||||   |||||||||||||||| |||||  
Sbjct: 1261 ttcctgcgaatgcaaatgccagagcaagcactg---tgacagaggaagggctagttgcca 1317

                                                                        
Query: 260  tatcttcaggctgtcggaagctaagctctgttctctattcctgcagccgaatgactaatt 319
            ||||| ||||||||   ||| ||   ||||| |||||||  |||   || ||||| || |
Sbjct: 1318 tatctgcaggctgtaacaagttacagtctgtgctctatttttgccaacggatgacaaact 1377

                                                                 
Query: 320  ctgctctgattacggtggcaaagaattgctcgcgaatcacatccttcagactg 372
            |||| |||||||| || |||||||| ||| | ||| |||| ||||||||||||
Sbjct: 1378 ctgcactgattactgtcgcaaagaactgcccacgattcacgtccttcagactg 1430
to top
>dbj|AK072358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H23, full
            insert sequence
          Length = 2987

 Score =  232 bits (117), Expect = 1e-57
 Identities = 258/305 (84%)
 Strand = Plus / Plus

                                                                        
Query: 403  gtgacaggccagccactggatgagggttttggggcaattgtccggtcatgcaagggcctc 462
            |||||||| |||||| |||||||||||| ||||||||| || | ||||||||| ||||| 
Sbjct: 1463 gtgacagggcagccattggatgagggttatggggcaatcgtacagtcatgcaaaggcctt 1522

                                                                        
Query: 463  aggcgtctatctatgtctggccttctcacggacagcgtgttcctgtacatcggcatgtac 522
            || || |||| | ||||||| |||||||| ||||  |||||||| ||||| |||||||| 
Sbjct: 1523 agacggctatgtttgtctggacttctcacagacacagtgttcctctacattggcatgtat 1582

                                                                        
Query: 523  gctgagaggctggagacgctctctgttgcgtttgcaggagatagtgatgatggcatgatc 582
            |||||||||||||||| ||| ||||| || |||||||||||||  || |||||||||| |
Sbjct: 1583 gctgagaggctggagatgctttctgtagcatttgcaggagataccgacgatggcatgacc 1642

                                                                        
Query: 583  tacgtgctcaatggctgcaagaatctgaggaagctggagatgagaaactgcccgtttggc 642
            |||||||||||||||||||| ||||| | ||||||||| || ||  || | || ||||| 
Sbjct: 1643 tacgtgctcaatggctgcaaaaatctcaagaagctggaaatcagggacagtccttttggt 1702

                                                                        
Query: 643  gacacggcgcttcttgcaggcatgcacaggtacgaggcgatgcgctctctttggatgtcg 702
            ||||  ||||||||||||||||||||   ||||||||| |||||||| || ||| |||||
Sbjct: 1703 gacagcgcgcttcttgcaggcatgcatcagtacgaggcaatgcgctcactctggttgtcg 1762

                 
Query: 703  tcgtg 707
            |||||
Sbjct: 1763 tcgtg 1767



 Score =  109 bits (55), Expect = 1e-20
 Identities = 279/353 (79%), Gaps = 3/353 (0%)
 Strand = Plus / Plus

                                                                        
Query: 20   tttgcaagaacctaacatgcttgaaccttagctatgctccaacgtttcagacagctgatc 79
            |||||||||| ||||| |||||||||||||||| |||||||| | |   ||  ||| |||
Sbjct: 1083 tttgcaagaatctaacgtgcttgaaccttagctctgctccaatggtcaggagtgcttatc 1142

                                                                        
Query: 80   ttattggagctattcgccattgtcagaatctccgacacttgtgggtactagatcacattg 139
            |||||| |  |||| | || ||  |||| |||| ||| ||||||||  ||||||||||||
Sbjct: 1143 ttattgaatttatttgtcaatgcaagaaactccaacaattgtgggtgttagatcacattg 1202

                                                                        
Query: 140  gcgatgcaggattgaaggttgtagcctcttgttgcctggagctgcaagagttgagggtat 199
            | |||| |||||||||  |||||||||| |  ||  |  |||| ||||||||||| ||||
Sbjct: 1203 gtgatgaaggattgaaaattgtagcctcatcctgtatacagctccaagagttgagagtat 1262

                                                                        
Query: 200  ttcctgcaaatgcagatgtgttagcaagcactgatgtgacagaggaagggctggttgcag 259
            ||||||| |||||| |||    |||||||||||   |||||||||||||||| |||||  
Sbjct: 1263 ttcctgcgaatgcaaatgccagagcaagcactg---tgacagaggaagggctagttgcca 1319

                                                                        
Query: 260  tatcttcaggctgtcggaagctaagctctgttctctattcctgcagccgaatgactaatt 319
            ||||| ||||||||   ||| ||   ||||| |||||||  |||   || ||||| || |
Sbjct: 1320 tatctgcaggctgtaacaagttacagtctgtgctctatttttgccaacggatgacaaact 1379

                                                                 
Query: 320  ctgctctgattacggtggcaaagaattgctcgcgaatcacatccttcagactg 372
            |||| |||||||| || |||||||| ||| | ||| |||| ||||||||||||
Sbjct: 1380 ctgcactgattactgtcgcaaagaactgcccacgattcacgtccttcagactg 1432
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  232 bits (117), Expect = 1e-57
 Identities = 258/305 (84%)
 Strand = Plus / Minus

                                                                            
Query: 403      gtgacaggccagccactggatgagggttttggggcaattgtccggtcatgcaagggcctc 462
                |||||||| |||||| |||||||||||| ||||||||| || | ||||||||| ||||| 
Sbjct: 17980311 gtgacagggcagccattggatgagggttatggggcaatcgtacagtcatgcaaaggcctt 17980252

                                                                            
Query: 463      aggcgtctatctatgtctggccttctcacggacagcgtgttcctgtacatcggcatgtac 522
                || || |||| | ||||||| |||||||| ||||  |||||||| ||||| |||||||| 
Sbjct: 17980251 agacggctatgtttgtctggacttctcacagacacagtgttcctctacattggcatgtat 17980192

                                                                            
Query: 523      gctgagaggctggagacgctctctgttgcgtttgcaggagatagtgatgatggcatgatc 582
                |||||||||||||||| ||| ||||| || |||||||||||||  || |||||||||| |
Sbjct: 17980191 gctgagaggctggagatgctttctgtagcatttgcaggagataccgacgatggcatgacc 17980132

                                                                            
Query: 583      tacgtgctcaatggctgcaagaatctgaggaagctggagatgagaaactgcccgtttggc 642
                |||||||||||||||||||| ||||| | ||||||||| || ||  || | || ||||| 
Sbjct: 17980131 tacgtgctcaatggctgcaaaaatctcaagaagctggaaatcagggacagtccttttggt 17980072

                                                                            
Query: 643      gacacggcgcttcttgcaggcatgcacaggtacgaggcgatgcgctctctttggatgtcg 702
                ||||  ||||||||||||||||||||   ||||||||| |||||||| || ||| |||||
Sbjct: 17980071 gacagcgcgcttcttgcaggcatgcatcagtacgaggcaatgcgctcactctggttgtcg 17980012

                     
Query: 703      tcgtg 707
                |||||
Sbjct: 17980011 tcgtg 17980007



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 195/245 (79%), Gaps = 3/245 (1%)
 Strand = Plus / Minus

                                                                            
Query: 128      tagatcacattggcgatgcaggattgaaggttgtagcctcttgttgcctggagctgcaag 187
                ||||||||||||| |||| |||||||||  |||||||||| |  ||  |  |||| ||||
Sbjct: 17980583 tagatcacattggtgatgaaggattgaaaattgtagcctcatcctgtatacagctccaag 17980524

                                                                            
Query: 188      agttgagggtatttcctgcaaatgcagatgtgttagcaagcactgatgtgacagaggaag 247
                ||||||| ||||||||||| |||||| |||    |||||||||||   ||||||||||||
Sbjct: 17980523 agttgagagtatttcctgcgaatgcaaatgccagagcaagcactg---tgacagaggaag 17980467

                                                                            
Query: 248      ggctggttgcagtatcttcaggctgtcggaagctaagctctgttctctattcctgcagcc 307
                |||| |||||  ||||| ||||||||   ||| ||   ||||| |||||||  |||   |
Sbjct: 17980466 ggctagttgccatatctgcaggctgtaacaagttacagtctgtgctctatttttgccaac 17980407

                                                                            
Query: 308      gaatgactaattctgctctgattacggtggcaaagaattgctcgcgaatcacatccttca 367
                | ||||| || ||||| |||||||| || |||||||| ||| | ||| |||| |||||||
Sbjct: 17980406 ggatgacaaactctgcactgattactgtcgcaaagaactgcccacgattcacgtccttca 17980347

                     
Query: 368      gactg 372
                |||||
Sbjct: 17980346 gactg 17980342



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 20       tttgcaagaacctaacatgcttgaaccttagctatgctccaa 61
                |||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 17981750 tttgcaagaatctaacgtgcttgaaccttagctctgctccaa 17981709
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>gb|AY105330.1| Zea mays PCO100079 mRNA sequence
          Length = 915

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 448 tcatgcaagggcctcaggcgtctatctatgtctggccttctcacggacag 497
           |||||||||||||||||||| || ||| | || |||||||||||||||||
Sbjct: 600 tcatgcaagggcctcaggcggctttctgtttcaggccttctcacggacag 649
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>gb|AY109095.1| Zea mays PCO106166 mRNA sequence
          Length = 904

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 553 tttgcaggagatagtgatgatggcatgatctacgtgctcaatggctgcaagaatctgagg 612
           ||||| |||||||||||| | || |||||  ||||| | || || |||||||||||||||
Sbjct: 39  tttgctggagatagtgataaggggatgatggacgtgatgaacgggtgcaagaatctgagg 98

                                           
Query: 613 aagctggagatgagaaactgcccgtttggcga 644
           ||||| ||||| ||| || | || ||||||||
Sbjct: 99  aagcttgagatcagagacagtccatttggcga 130
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>ref|XM_493919.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1764

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                         
Query: 447  gtcatgcaagggcctcaggcgtctatctatgtctggccttctcac 491
            |||||||| |||||| |||||||| ||||| || |||||||||||
Sbjct: 1311 gtcatgcaggggccttaggcgtctctctatctcaggccttctcac 1355
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>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 447   gtcatgcaagggcctcaggcgtctatctatgtctggccttctcac 491
             |||||||| |||||| |||||||| ||||| || |||||||||||
Sbjct: 27835 gtcatgcaggggccttaggcgtctctctatctcaggccttctcac 27791
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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 447   gtcatgcaagggcctcaggcgtctatctatgtctggccttctcac 491
             |||||||| |||||| |||||||| ||||| || |||||||||||
Sbjct: 34566 gtcatgcaggggccttaggcgtctctctatctcaggccttctcac 34610
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 447     gtcatgcaagggcctcaggcgtctatctatgtctggccttctcac 491
               |||||||| |||||| |||||||| ||||| || |||||||||||
Sbjct: 2833224 gtcatgcaggggccttaggcgtctctctatctcaggccttctcac 2833180
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>dbj|AK121600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040K05, full
            insert sequence
          Length = 4936

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                         
Query: 447  gtcatgcaagggcctcaggcgtctatctatgtctggccttctcac 491
            |||||||| |||||| |||||||| ||||| || |||||||||||
Sbjct: 4016 gtcatgcaggggccttaggcgtctctctatctcaggccttctcac 4060
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>ref|NM_113593.2| Arabidopsis thaliana ubiquitin-protein ligase AT3G26810 mRNA,
            complete cds
          Length = 2401

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 634  ccgtttggcgacacggcgcttcttgc 659
            |||||||| |||||||||||||||||
Sbjct: 1956 ccgtttggggacacggcgcttcttgc 1981
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>gb|BT010396.1| Arabidopsis thaliana At3g26830 mRNA, complete cds
          Length = 1728

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 634  ccgtttggcgacacggcgcttcttgc 659
            |||||||| |||||||||||||||||
Sbjct: 1459 ccgtttggggacacggcgcttcttgc 1484
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>gb|AY062568.1| Arabidopsis thaliana transport inhibitor response-like protein
            (At3g26830; MDJ14.12) mRNA, complete cds
          Length = 2382

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 634  ccgtttggcgacacggcgcttcttgc 659
            |||||||| |||||||||||||||||
Sbjct: 1960 ccgtttggggacacggcgcttcttgc 1985
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>emb|BX823269.1|CNS0A7D0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS18ZF11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2348

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 634  ccgtttggcgacacggcgcttcttgc 659
            |||||||| |||||||||||||||||
Sbjct: 1965 ccgtttggggacacggcgcttcttgc 1990
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>ref|XM_578312.1| PREDICTED: Rattus norvegicus similar to monoclonal antibody kappa
           light chain (LOC502813), mRNA
          Length = 915

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 252 ggttgcagtatcttcaggctgt 273
           ||||||||||||||||||||||
Sbjct: 315 ggttgcagtatcttcaggctgt 294
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>dbj|AB016889.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDJ14
          Length = 87630

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 634   ccgtttggcgacacggcgcttcttgc 659
             |||||||| |||||||||||||||||
Sbjct: 36662 ccgtttggggacacggcgcttcttgc 36687
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>ref|XM_467902.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1909

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1365 tggatgatggttttggggcaattgt 1389
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>ref|XM_507533.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1175_B01.8-1 mRNA
          Length = 2581

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1534 tggatgatggttttggggcaattgt 1558
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>ref|XM_506986.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1175_B01.8-1 mRNA
          Length = 2610

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1534 tggatgatggttttggggcaattgt 1558
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>ref|XM_467901.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2124

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1536 tggatgatggttttggggcaattgt 1560
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>emb|AL139411.11| Human DNA sequence from clone RP11-222A5 on chromosome 1q23.1-25.3
             Contains a novel gene, complete sequence
          Length = 116304

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   ctgcaaatgcagatgtgttag 223
             |||||||||||||||||||||
Sbjct: 17448 ctgcaaatgcagatgtgttag 17468
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>emb|BX936438.22| Zebrafish DNA sequence from clone CH211-255D18 in linkage group 20
              Contains the lsm4 gene for LSM4 homolog U6 small nuclear
              RNA associated (S. cerevisiae), the gene for a novel
              protein similar to vertebrate phosphodiesterase 4 family
              cAMP-specific (phosphodiesterase E3 dunce homolog,
              Drosophila) (PDE4), the ddx49 gene for DEAD
              (Asp-Glu-Ala-Asp) box polypeptide 49, the gene for a novel
              protein similar to vertebrate RAB3A member RAS oncogene
              family (RAB3A), the 5' end of a novel gene, two novel genes
              and four CpG islands, complete sequence
          Length = 188269

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 202    cctgcaaatgcagatgtgtta 222
              |||||||||||||||||||||
Sbjct: 175783 cctgcaaatgcagatgtgtta 175803
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 419      tggatgagggttttggggcaattgt 443
                ||||||| |||||||||||||||||
Sbjct: 32006834 tggatgatggttttggggcaattgt 32006858
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1175_B01
          Length = 96191

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 419   tggatgagggttttggggcaattgt 443
             ||||||| |||||||||||||||||
Sbjct: 27209 tggatgatggttttggggcaattgt 27233
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>dbj|AK111900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038B16, full
            insert sequence
          Length = 2609

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1533 tggatgatggttttggggcaattgt 1557
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>dbj|AK111658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149F16, full
           insert sequence
          Length = 1295

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 419 tggatgagggttttggggcaattgt 443
           ||||||| |||||||||||||||||
Sbjct: 740 tggatgatggttttggggcaattgt 764
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>dbj|AK111630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121D06, full
            insert sequence
          Length = 1908

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1364 tggatgatggttttggggcaattgt 1388
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>dbj|AK111627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115M15, full
            insert sequence
          Length = 2579

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1532 tggatgatggttttggggcaattgt 1556
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>dbj|AK100506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099L12, full
            insert sequence
          Length = 2123

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1535 tggatgatggttttggggcaattgt 1559
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>dbj|AK073912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H14, full
            insert sequence
          Length = 2655

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 419  tggatgagggttttggggcaattgt 443
            ||||||| |||||||||||||||||
Sbjct: 1629 tggatgatggttttggggcaattgt 1653
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>gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0056A20, complete sequence
          Length = 151163

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   gatagtgatgatggcatgat 581
             ||||||||||||||||||||
Sbjct: 94728 gatagtgatgatggcatgat 94747
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>gb|DQ146364.1| Anopheles funestus mitochondrion, complete genome
          Length = 15354

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   attcattatatttgcaagaa 29
            ||||||||||||||||||||
Sbjct: 6406 attcattatatttgcaagaa 6387
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>ref|XM_992160.1| PREDICTED: Mus musculus similar to Ig kappa chain V-I region Walker
           precursor (LOC435898), mRNA
          Length = 366

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 ggttgcagtatcttcaggct 271
           ||||||||||||||||||||
Sbjct: 315 ggttgcagtatcttcaggct 296
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>gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome 15, complete sequence
          Length = 197376

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 598   tgcaagaatctgaggaagct 617
             ||||||||||||||||||||
Sbjct: 23381 tgcaagaatctgaggaagct 23362
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>emb|AL357117.20| Human DNA sequence from clone RP11-436I24 on chromosome 6 Contains part
             of the gene for a novel protein (contains KIAA0680), a
             novel gene and a CpG island, complete sequence
          Length = 139627

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   gacagcgtgttcctgtacat 512
             ||||||||||||||||||||
Sbjct: 76864 gacagcgtgttcctgtacat 76845
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 562     gatagtgatgatggcatgat 581
               ||||||||||||||||||||
Sbjct: 1576155 gatagtgatgatggcatgat 1576174
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 562     gatagtgatgatggcatgat 581
               ||||||||||||||||||||
Sbjct: 1576155 gatagtgatgatggcatgat 1576174
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>gb|AC104065.3| Homo sapiens BAC clone RP11-140E17 from 4, complete sequence
          Length = 77127

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 608   tgaggaagctggagatgaga 627
             ||||||||||||||||||||
Sbjct: 37114 tgaggaagctggagatgaga 37133
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>gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosome 15, complete sequence
          Length = 177253

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 598    tgcaagaatctgaggaagct 617
              ||||||||||||||||||||
Sbjct: 112298 tgcaagaatctgaggaagct 112279
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>gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, complete sequence
          Length = 210315

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   ggttgcagtatcttcaggct 271
             ||||||||||||||||||||
Sbjct: 47659 ggttgcagtatcttcaggct 47640
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>emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chromosome 2, complete
              sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     attcattatatttgcaagaa 29
              ||||||||||||||||||||
Sbjct: 106133 attcattatatttgcaagaa 106114
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>gb|AC115848.10| Mus musculus chromosome 3, clone RP24-248L23, complete sequence
          Length = 143257

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   atggctgcaagaatctgagg 612
             ||||||||||||||||||||
Sbjct: 26757 atggctgcaagaatctgagg 26776
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>gb|AF136711.1|AF136711 Amoeba proteus myosin heavy chain mRNA, complete cds
          Length = 6499

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 564  tagtgatgatggcatgatct 583
            ||||||||||||||||||||
Sbjct: 1140 tagtgatgatggcatgatct 1121
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 562     gatagtgatgatggcatgat 581
               ||||||||||||||||||||
Sbjct: 1576152 gatagtgatgatggcatgat 1576171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,484,239
Number of Sequences: 3902068
Number of extensions: 5484239
Number of successful extensions: 101509
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101224
Number of HSP's gapped (non-prelim): 275
length of query: 726
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 703
effective length of database: 17,143,297,704
effective search space: 12051738285912
effective search space used: 12051738285912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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