ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags28b24 |
|---|---|
| Clone Library Name | barley_pub |
>YK17_SCHPO (Q9HDY3) Membrane protein PB1A10.07c| Length = 441 Score = 93.2 bits (230), Expect = 5e-19 Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 11/181 (6%) Frame = +3 Query: 66 LLPASVIGLYCTYLCYSGLSSEPRDYECNGLHNHSKAMXXXXXXXXXXXXXXXVVYSAVR 245 L +S++ Y YL S L++ P + +CN N + ++YSAVR Sbjct: 264 LAQSSMVMCYTCYLILSALANRPDEGQCNPWGNSASGTREFSKVIGAAFTFFTILYSAVR 323 Query: 246 AGSSATVLSA-----PDSPRAGADKPLLPFSKADEEETKDVAKPVTYSYSFFHLIFSLAS 410 A SS + DS G PL S +++ D Y++ +FH++F LA+ Sbjct: 324 AASSRESDDSYSYLYADSHDMGVSTPLEDGSSEEDKHQSD------YNFIWFHIVFVLAA 377 Query: 411 MYSAMLLTGWST-SVGES---GMLVDVG--WPSVWVRIATQWATAGLFIWSLVAPLLFPD 572 Y+A LLT W+T SV E+ + V +G + +VWV+I T W GL++WS +AP+ FP Sbjct: 378 FYTASLLTNWNTTSVYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLYVWSCLAPVFFPY 437 Query: 573 R 575 R Sbjct: 438 R 438
>SERC2_MOUSE (Q8K0E7) Serine incorporator 2 (Tumor differentially expressed| 2-like) Length = 450 Score = 87.4 bits (215), Expect = 3e-17 Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 13/188 (6%) Frame = +3 Query: 57 NGSLLPASVIGLYCTYLCYSGLSSEPRDYECN------------GLHNHSKAMXXXXXXX 200 N LL ASVI LY ++ +S LS+ P D +CN L ++S Sbjct: 265 NSGLLQASVITLYTMFVTWSALSNVP-DQKCNPHLPTKNGTGQVDLEDYSTVWWDAPSIV 323 Query: 201 XXXXXXXXVVYSAVRAGSSATVLSAPDSPRAGADK-PLLPFSKADEEETKDVAKPVTYSY 377 + ++R+ V S + A+ + +D + VTYSY Sbjct: 324 GLVIFILCTFFISLRSSDHRQVNSLMQTEECPAEMVQQQQVAVSDGRAYDNEQDGVTYSY 383 Query: 378 SFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSLVAP 557 SFFH LAS++ M LT W S GE+ ++ W SVWV+I WA L++W+LVAP Sbjct: 384 SFFHFCLVLASLHVMMTLTNWY-SPGETRKMIST-WTSVWVKICASWAGLFLYLWTLVAP 441 Query: 558 LLFPDREF 581 LL P+R+F Sbjct: 442 LLLPNRDF 449
>SERC3_HUMAN (Q13530) Serine incorporator 3 (Tumor differentially expressed| protein 1) Length = 473 Score = 78.6 bits (192), Expect = 1e-14 Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 34/206 (16%) Frame = +3 Query: 66 LLPASVIGLYCTYLCYSGLSSEPRDYECNGL---------------------------HN 164 LL +S+I LY YL +S +S+EP D CN + Sbjct: 269 LLQSSLITLYTMYLTWSAMSNEP-DRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPS 327 Query: 165 HSKAMXXXXXXXXXXXXXXXVVYSAVRAGSSATV----LSAPDSPRAGADKPLLPFSKAD 332 S ++ ++YS++R +++ V LS DS G + D Sbjct: 328 KSGSLLDSDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEED 387 Query: 333 EEETKDV---AKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVR 503 + + V + V YSYS FHL+ LAS+Y M LT W + + + WP+VWV+ Sbjct: 388 GQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSK-WPAVWVK 446 Query: 504 IATQWATAGLFIWSLVAPLLFPDREF 581 I++ W L++W+LVAPL+ R+F Sbjct: 447 ISSSWVCLLLYVWTLVAPLVLTSRDF 472
>SERC2_HUMAN (Q96SA4) Serine incorporator 2 (Tumor differentially expressed| 2-like) Length = 456 Score = 77.0 bits (188), Expect = 4e-14 Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 25/200 (12%) Frame = +3 Query: 57 NGSLLPASVIGLYCTYLCYSGLSSEPRDYECN--------------GLHNHSKAMXXXXX 194 N LL ASVI LY ++ +S LSS P + +CN G + Sbjct: 265 NSGLLQASVITLYTMFVTWSALSSIP-EQKCNPHLPTQLGNETVVAGPEGYETQWWDAPS 323 Query: 195 XXXXXXXXXXVVYSAVRAGSSATVLSAPDSPRAGADKPLLPFSKADEEETKDVAK----- 359 ++ ++R+ V S + P A +++ + VA Sbjct: 324 IVGLIIFLLCTLFISLRSSDHRQVNSLMQTEECP------PMLDATQQQQQQVAACEGRA 377 Query: 360 ------PVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWA 521 VTYSYSFFH LAS++ M LT W GE+ ++ W +VWV+I WA Sbjct: 378 FDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYKP-GETRKMIST-WTAVWVKICASWA 435 Query: 522 TAGLFIWSLVAPLLFPDREF 581 L++W+LVAPLL +R+F Sbjct: 436 GLLLYLWTLVAPLLLRNRDF 455
>SERC1_HUMAN (Q9NRX5) Serine incorporator 1 (Tumor differentially expressed| protein 2) (Tumor differentially expressed 1 protein-like) Length = 453 Score = 73.6 bits (179), Expect = 4e-13 Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 34/212 (16%) Frame = +3 Query: 48 PKVNGS-----LLPASVIGLYCTYLCYSGLSSEPRDYECNGL---------------HNH 167 PK+ S LL +SVI +Y YL +S +++EP + CN Sbjct: 250 PKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEP-ETNCNPSLLSIIGYNTTSTVPKEGQ 308 Query: 168 SKAMXXXXXXXXXXXXXXXVVYSAVRAGSSATV----LSAPDSPR---AGADKPLLPFSK 326 S V YS++R +++ V L++ +S GA S Sbjct: 309 SVQWWHAQGIIGLILFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIEDGGAR------SD 362 Query: 327 ADEEETKDVAKPV-------TYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGW 485 E+ DV + V TYSYSFFH + LAS+Y M LT W E + W Sbjct: 363 GSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQW 420 Query: 486 PSVWVRIATQWATAGLFIWSLVAPLLFPDREF 581 +VWV+I++ W L++W+LVAPL+ +R+F Sbjct: 421 TAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452
>SERC1_MOUSE (Q9QZI8) Serine incorporator 1 (Tumor differentially expressed| protein 2) (Tumor differentially expressed 1 protein-like) (Membrane protein TMS-2) (Axotomy-induced glyco/Golgi protein 2) Length = 453 Score = 73.2 bits (178), Expect = 6e-13 Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 28/206 (13%) Frame = +3 Query: 48 PKVNGS-----LLPASVIGLYCTYLCYSGLSSEPRDYECN-------GLHN--------H 167 PK+ S LL +SVI +Y YL +S +++EP + CN G + Sbjct: 250 PKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEP-ETNCNPSLLSIIGFNTTRPIPKDGQ 308 Query: 168 SKAMXXXXXXXXXXXXXXXVVYSAVRAGSSATV----LSAPDSPRA----GADKPLLPFS 323 S V YS++R +++ V L++ +S G L Sbjct: 309 SVQWWHPQGIIGLVLFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIEDGNGRSDGSLDDG 368 Query: 324 KADEEETKDVAKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVR 503 + VTYSYSFFH + LAS+Y M LT W E + W +VWV+ Sbjct: 369 DGIHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVK 426 Query: 504 IATQWATAGLFIWSLVAPLLFPDREF 581 I++ W L++W+LVAPL+ +R+F Sbjct: 427 ISSSWIGLVLYVWTLVAPLVLTNRDF 452
>SERC3_MOUSE (Q9QZI9) Serine incorporator 3 (Tumor differentially expressed| protein 1) (Membrane protein TMS-1) (Axotomy-induced glycoprotein 1) (Axotomy-induced glyco/Golgi protein 1) (AIGP-1) Length = 472 Score = 67.8 bits (164), Expect = 2e-11 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 36/208 (17%) Frame = +3 Query: 66 LLPASVIGLYCTYLCYSGLSSEPRDYECN----GLHNHSKAMXXXXXXXXXXXXXXX--- 224 LL +S+I LY YL +S +++EP + CN + H + Sbjct: 269 LLQSSIITLYTLYLTWSAMTNEP-ERSCNPSLMSIITHLTSPTVSPANSTTLAPAYAPPS 327 Query: 225 --------------------VVYSAVRAGSSATVLSAPDSPRAGADKPLL--PFSKADEE 338 ++YS+ R S++ V S G+D +L + A++E Sbjct: 328 QSGHFMNLDDIWGLIIFVFCLIYSSFRTSSNSQVNKLTLS---GSDSVILGDTTNGANDE 384 Query: 339 E-------TKDVAKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVW 497 E + + V YSYSFFHL+ AS+Y M +T W S V W +VW Sbjct: 385 EDGQPRRAVDNEKEGVQYSYSFFHLMLCCASLYIMMTITSWY-SPDAKFQKVSSKWLAVW 443 Query: 498 VRIATQWATAGLFIWSLVAPLLFPDREF 581 ++ + W L++W+LVAPL+ R+F Sbjct: 444 FKMGSSWLCLLLYLWTLVAPLVLTGRDF 471
>TMS1_YEAST (Q12116) Membrane protein TMS1| Length = 473 Score = 64.7 bits (156), Expect = 2e-10 Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 42/212 (19%) Frame = +3 Query: 66 LLPASVIGLYCTYLCYSGLSSEPRDYECNGLHNHSKAMXXXXXXXXXXXXXXXVVYSAVR 245 L +S++ +YCTYL S +SSEP D CN L S + Y+ R Sbjct: 257 LAQSSMVSVYCTYLTMSAMSSEPDDKMCNPLVR-SSGTRKFSIILGSLFTFIAIAYTTTR 315 Query: 246 AGSSATVLSAP--------------------------DSPRAGADKPLLPFSK------- 326 A +++ ++ + ++ LP S Sbjct: 316 AAANSAFQGTNTNGAIYLGNDIEYEGLGGQTRNQLRYEAIKQAVEEGSLPESALYDTAWL 375 Query: 327 -------ADEEETKDVAKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVG- 482 A + + D Y+Y+ FH+IF LA+ + A+LLT + + + G + VG Sbjct: 376 GTSSPTGAMDNQNDDERTGTKYNYTLFHVIFFLATQWIAILLT-INVTQDDVGDFIPVGR 434 Query: 483 -WPSVWVRIATQWATAGLFIWSLVAPLLFPDR 575 + WV+I + W L+ W++VAP + PDR Sbjct: 435 TYFYSWVKIVSAWICYALYGWTVVAPAIMPDR 466
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Anion exchanger 3 brain isoform) Length = 1233 Score = 30.8 bits (68), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -2 Query: 473 DKHSALPNRGRPASQEHGRVHACQGEDEVEE 381 +K SA P+ G P QE G A +GE+E EE Sbjct: 113 EKTSAPPSEGTPPIQEEGGAGAHEGEEEEEE 143
>RDRP_TVCV (Q88920) RNA-directed RNA polymerase (EC 2.7.7.48) (180 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (125 kDa protein)] Length = 1601 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/56 (25%), Positives = 31/56 (55%) Frame = +3 Query: 240 VRAGSSATVLSAPDSPRAGADKPLLPFSKADEEETKDVAKPVTYSYSFFHLIFSLA 407 V+ A + P+ AD+ +L + KA+E ++ D++KP+ S +++ + L+ Sbjct: 508 VKVAEQALEIKVPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELS 563
>CLC4F_HUMAN (Q8N1N0) C-type lectin domain family 4 member F (C-type lectin| superfamily member 13) (C-type lectin 13) Length = 539 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +1 Query: 121 SPVSQGIMSATVFTITPKLCQPVALHWDYAPPSFLWSTLLFVLALLQLCSQHQTHHAPVP 300 SP Q + S + PK+ + V A P+F+ TL+F L L + Q QT P P Sbjct: 16 SPHPQEVDSVAMAPAAPKIPRLVQ-----ATPAFMAVTLVFSLVTLFVVVQQQTRPVPKP 70 Query: 301 I 303 + Sbjct: 71 V 71
>CCSA_CYAPA (P48257) Cytochrome c biogenesis protein ccsA| Length = 322 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +3 Query: 366 TYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWS 545 T+S+ F + I + A+ W + SGML+ S+++ + T+W TAG F S Sbjct: 12 TFSF-FIYFILTFLFFAQAIFKNHWLKTFNFSGMLI--ANVSIFLLLITRWITAGYFPIS 68 Query: 546 LVAPLLF 566 + LF Sbjct: 69 NLYESLF 75
>PA2GD_MOUSE (Q9WVF6) Group IID secretory phospholipase A2 precursor (EC| 3.1.1.4) (Phosphatidylcholine 2-acylhydrolase GIID) (GIID sPLA2) (PLA2IID) (sPLA(2)-IID) (Secretory-type PLA, stroma-associated homolog) Length = 144 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 452 WGERNACRC--RVAVCLGQDRDPVGNSRPVHLVPRCSPPVP 568 W ER C C VA+CL Q+ D + PRC P Sbjct: 102 WCERQLCACDKEVALCLKQNLDSYNKRLRYYWRPRCKGKTP 142
>NUOA_SHIFL (P0AFC6) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +3 Query: 369 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 548 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 549 VAPLLF 566 +A L++ Sbjct: 111 LAGLVY 116
>NUOA_ECOLI (P0AFC3) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +3 Query: 369 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 548 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 549 VAPLLF 566 +A L++ Sbjct: 111 LAGLVY 116
>NUOA_ECOL6 (P0AFC4) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +3 Query: 369 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 548 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 549 VAPLLF 566 +A L++ Sbjct: 111 LAGLVY 116
>NUOA_ECO57 (P0AFC5) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +3 Query: 369 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 548 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 549 VAPLLF 566 +A L++ Sbjct: 111 LAGLVY 116
>PPHLN_MOUSE (Q8K2H1) Periphilin-1| Length = 381 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -3 Query: 508 AILTQTDGHPTSTSIPLSPTEVDQPVRSMAEYMLAREKMRWKNE 377 ++ T D P+S+S S +D+P R + E LA + +W NE Sbjct: 211 SVKTSRDASPSSSSAVASSKALDKPSR-LTEKELAEAESKWANE 253
>UHPT_CHLTR (O84548) Probable hexose phosphate transport protein| Length = 456 Score = 29.3 bits (64), Expect = 9.4 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Frame = +3 Query: 339 ETKDVAKPVTYSYSFFHLIFSLASMYSAMLLTGW---STSVGESGMLVDVGWPSVWVRIA 509 ETKD + T + +F + ++ MLL GW + S G+ G + V + V I Sbjct: 291 ETKDYS---TVKANLCVSLFEIGGLFG-MLLAGWLSDTISKGKRGPMNVVFSLGLLVSIL 346 Query: 510 TQWATAGLFIWSLVAPLLF 566 W T F+W + LF Sbjct: 347 GLWGTRDYFVWWIDGTFLF 365 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,536,456 Number of Sequences: 219361 Number of extensions: 1661630 Number of successful extensions: 5536 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5278 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5526 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
