ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags28a23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103755.1| Zea mays PCO153089 mRNA sequence Length = 916 Score = 283 bits (143), Expect = 1e-73 Identities = 186/199 (93%), Gaps = 1/199 (0%) Strand = Plus / Plus Query: 1 gcgtgctgctgccgcccaatcagnaaggacgtgacgtcgccgctgccggggtggatcatc 60 ||||||||||||| ||||| ||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 281 gcgtgctgctgccccccaagcag-aaggacgcgacgtcgccgctgcccggctggatcatc 339 Query: 61 gagtcgctcaaggcggtgcggtacatcgacgcggcccacttctcggtgccggcggggcag 120 |||||||||||||||||||||| |||||||||||| |||||||| || || ||||||||| Sbjct: 340 gagtcgctcaaggcggtgcggttcatcgacgcggctcacttctctgtccccgcggggcag 399 Query: 121 tacgcggtggagctggtggccgggcgggagagcgccatcgcgcaggtcatccgcaccgtg 180 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 tatgcggtggagctggtggccgggcgggagagcgccatcgcgcaggtcatccgcaccgtt 459 Query: 181 cccaaccgcgcctacaacc 199 ||||||||||||||||||| Sbjct: 460 cccaaccgcgcctacaacc 478
>ref|XM_470036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1474 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Plus Query: 25 aaggacgtgacgtcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtac 84 ||||||| |||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct: 830 aaggacgcgacgtcgccgctcccgggctggatcatcgagtcgctcaaggccgtccgcttc 889 Query: 85 atcgacgcggcccacttctcggtgccggcggggcagtacgcggtggagctggtggccggg 144 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 890 atcgacgcggcgcacttctccgtcccggcggggcagtacgccgtggagctcgtcgccggc 949 Query: 145 cgggagagcgccatcgcgcaggtcatccgcaccgtgcccaaccgcgcctacaacc 199 |||||||||||||||||||||| |||||||| ||| | |||||||||||||||| Sbjct: 950 agggagagcgccatcgcgcaggtgatccgcacggtggcgaaccgcgcctacaacc 1004
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Plus Query: 25 aaggacgtgacgtcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtac 84 ||||||| |||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct: 33463209 aaggacgcgacgtcgccgctcccgggctggatcatcgagtcgctcaaggccgtccgcttc 33463268 Query: 85 atcgacgcggcccacttctcggtgccggcggggcagtacgcggtggagctggtggccggg 144 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 33463269 atcgacgcggcgcacttctccgtcccggcggggcagtacgccgtggagctcgtcgccggc 33463328 Query: 145 cgggagagcgccatcgcgcaggtcatccgcaccgtgcccaaccgcgcctacaacc 199 |||||||||||||||||||||| |||||||| ||| | |||||||||||||||| Sbjct: 33463329 agggagagcgccatcgcgcaggtgatccgcacggtggcgaaccgcgcctacaacc 33463383
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Minus Query: 25 aaggacgtgacgtcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtac 84 ||||||| |||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct: 34902 aaggacgcgacgtcgccgctcccgggctggatcatcgagtcgctcaaggccgtccgcttc 34843 Query: 85 atcgacgcggcccacttctcggtgccggcggggcagtacgcggtggagctggtggccggg 144 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 34842 atcgacgcggcgcacttctccgtcccggcggggcagtacgccgtggagctcgtcgccggc 34783 Query: 145 cgggagagcgccatcgcgcaggtcatccgcaccgtgcccaaccgcgcctacaacc 199 |||||||||||||||||||||| |||||||| ||| | |||||||||||||||| Sbjct: 34782 agggagagcgccatcgcgcaggtgatccgcacggtggcgaaccgcgcctacaacc 34728
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Plus Query: 25 aaggacgtgacgtcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtac 84 ||||||| |||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct: 33553719 aaggacgcgacgtcgccgctcccgggctggatcatcgagtcgctcaaggccgtccgcttc 33553778 Query: 85 atcgacgcggcccacttctcggtgccggcggggcagtacgcggtggagctggtggccggg 144 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 33553779 atcgacgcggcgcacttctccgtcccggcggggcagtacgccgtggagctcgtcgccggc 33553838 Query: 145 cgggagagcgccatcgcgcaggtcatccgcaccgtgcccaaccgcgcctacaacc 199 |||||||||||||||||||||| |||||||| ||| | |||||||||||||||| Sbjct: 33553839 agggagagcgccatcgcgcaggtgatccgcacggtggcgaaccgcgcctacaacc 33553893
>dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P15, full insert sequence Length = 1182 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Plus Query: 25 aaggacgtgacgtcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtac 84 ||||||| |||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct: 615 aaggacgcgacgtcgccgctcccgggctggatcatcgagtcgctcaaggccgtccgcttc 674 Query: 85 atcgacgcggcccacttctcggtgccggcggggcagtacgcggtggagctggtggccggg 144 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 675 atcgacgcggcgcacttctccgtcccggcggggcagtacgccgtggagctcgtcgccggc 734 Query: 145 cgggagagcgccatcgcgcaggtcatccgcaccgtgcccaaccgcgcctacaacc 199 |||||||||||||||||||||| |||||||| ||| | |||||||||||||||| Sbjct: 735 agggagagcgccatcgcgcaggtgatccgcacggtggcgaaccgcgcctacaacc 789
>dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D10, full insert sequence Length = 1396 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Plus Query: 25 aaggacgtgacgtcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtac 84 ||||||| |||||||||||| ||||| ||||||||||||||||||||||| || || | | Sbjct: 829 aaggacgcgacgtcgccgctcccgggctggatcatcgagtcgctcaaggccgtccgcttc 888 Query: 85 atcgacgcggcccacttctcggtgccggcggggcagtacgcggtggagctggtggccggg 144 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 889 atcgacgcggcgcacttctccgtcccggcggggcagtacgccgtggagctcgtcgccggc 948 Query: 145 cgggagagcgccatcgcgcaggtcatccgcaccgtgcccaaccgcgcctacaacc 199 |||||||||||||||||||||| |||||||| ||| | |||||||||||||||| Sbjct: 949 agggagagcgccatcgcgcaggtgatccgcacggtggcgaaccgcgcctacaacc 1003
>ref|XM_464560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1499 Score = 109 bits (55), Expect = 3e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtacatcgacgcggcc 96 |||||||||||||||||||| | |||||||||||||||||| |||||||||| | | Sbjct: 839 tcgccgctgccggggtggatggtggagtcgctcaaggcggtgaagtacatcgacagcgac 898 Query: 97 cacttctcggtgccggcggggcagtacgcggtggagctggtggccgggcgggagagcgcc 156 |||||| |||||||| |||| | ||| || |||||| |||| |||||||||||||| Sbjct: 899 cacttcgcggtgccgcgcgggcggcgcgctgtcgagctgctggcggggcgggagagcgcg 958 Query: 157 atcgcgcaggtcatccgcaccgt 179 ||||||||||| ||||||||||| Sbjct: 959 atcgcgcaggtgatccgcaccgt 981
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 109 bits (55), Expect = 3e-21 Identities = 148/178 (83%), Gaps = 1/178 (0%) Strand = Plus / Plus Query: 1 gcgtgctgctgccgcccaatcagnaaggacgtgacgtcgccgctgccggggtggatcatc 60 |||||||||||||||| || | | ||||||| ||||||||||||||||||||||||| || Sbjct: 5802841 gcgtgctgctgccgccgaagc-ggaaggacgcgacgtcgccgctgccggggtggatcgtc 5802899 Query: 61 gagtcgctcaaggcggtgcggtacatcgacgcggcccacttctcggtgccggcggggcag 120 ||||||||| | || || | |||||||| | |||||| |||||||| ||||||| Sbjct: 5802900 gagtcgctccgccccgtccgcctcgtcgacgcgccgcacttcgcggtgccgcaggggcag 5802959 Query: 121 tacgcggtggagctggtggccgggcgggagagcgccatcgcgcaggtcatccgcaccg 178 ||| |||||||| || |||||||||||| |||| |||||||||| |||||||||| Sbjct: 5802960 cgcgccgtggagctcgtcgccgggcgggagggcgcggtcgcgcaggtgatccgcaccg 5803017
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 109 bits (55), Expect = 3e-21 Identities = 121/143 (84%) Strand = Plus / Minus Query: 37 tcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtacatcgacgcggcc 96 |||||||||||||||||||| | |||||||||||||||||| |||||||||| | | Sbjct: 5913273 tcgccgctgccggggtggatggtggagtcgctcaaggcggtgaagtacatcgacagcgac 5913214 Query: 97 cacttctcggtgccggcggggcagtacgcggtggagctggtggccgggcgggagagcgcc 156 |||||| |||||||| |||| | ||| || |||||| |||| |||||||||||||| Sbjct: 5913213 cacttcgcggtgccgcgcgggcggcgcgctgtcgagctgctggcggggcgggagagcgcg 5913154 Query: 157 atcgcgcaggtcatccgcaccgt 179 ||||||||||| ||||||||||| Sbjct: 5913153 atcgcgcaggtgatccgcaccgt 5913131
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 109 bits (55), Expect = 3e-21 Identities = 148/178 (83%), Gaps = 1/178 (0%) Strand = Plus / Plus Query: 1 gcgtgctgctgccgcccaatcagnaaggacgtgacgtcgccgctgccggggtggatcatc 60 |||||||||||||||| || | | ||||||| ||||||||||||||||||||||||| || Sbjct: 109869 gcgtgctgctgccgccgaagc-ggaaggacgcgacgtcgccgctgccggggtggatcgtc 109927 Query: 61 gagtcgctcaaggcggtgcggtacatcgacgcggcccacttctcggtgccggcggggcag 120 ||||||||| | || || | |||||||| | |||||| |||||||| ||||||| Sbjct: 109928 gagtcgctccgccccgtccgcctcgtcgacgcgccgcacttcgcggtgccgcaggggcag 109987 Query: 121 tacgcggtggagctggtggccgggcgggagagcgccatcgcgcaggtcatccgcaccg 178 ||| |||||||| || |||||||||||| |||| |||||||||| |||||||||| Sbjct: 109988 cgcgccgtggagctcgtcgccgggcgggagggcgcggtcgcgcaggtgatccgcaccg 110045
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 109 bits (55), Expect = 3e-21 Identities = 121/143 (84%) Strand = Plus / Minus Query: 37 tcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtacatcgacgcggcc 96 |||||||||||||||||||| | |||||||||||||||||| |||||||||| | | Sbjct: 91494 tcgccgctgccggggtggatggtggagtcgctcaaggcggtgaagtacatcgacagcgac 91435 Query: 97 cacttctcggtgccggcggggcagtacgcggtggagctggtggccgggcgggagagcgcc 156 |||||| |||||||| |||| | ||| || |||||| |||| |||||||||||||| Sbjct: 91434 cacttcgcggtgccgcgcgggcggcgcgctgtcgagctgctggcggggcgggagagcgcg 91375 Query: 157 atcgcgcaggtcatccgcaccgt 179 ||||||||||| ||||||||||| Sbjct: 91374 atcgcgcaggtgatccgcaccgt 91352
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 109 bits (55), Expect = 3e-21 Identities = 121/143 (84%) Strand = Plus / Minus Query: 37 tcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtacatcgacgcggcc 96 |||||||||||||||||||| | |||||||||||||||||| |||||||||| | | Sbjct: 143075 tcgccgctgccggggtggatggtggagtcgctcaaggcggtgaagtacatcgacagcgac 143016 Query: 97 cacttctcggtgccggcggggcagtacgcggtggagctggtggccgggcgggagagcgcc 156 |||||| |||||||| |||| | ||| || |||||| |||| |||||||||||||| Sbjct: 143015 cacttcgcggtgccgcgcgggcggcgcgctgtcgagctgctggcggggcgggagagcgcg 142956 Query: 157 atcgcgcaggtcatccgcaccgt 179 ||||||||||| ||||||||||| Sbjct: 142955 atcgcgcaggtgatccgcaccgt 142933
>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full insert sequence Length = 1498 Score = 93.7 bits (47), Expect = 2e-16 Identities = 120/143 (83%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggatcatcgagtcgctcaaggcggtgcggtacatcgacgcggcc 96 |||||||||||||||||||| | |||||||||||||||||| |||||||||| | | Sbjct: 839 tcgccgctgccggggtggatggtggagtcgctcaaggcggtgaagtacatcgacagcgac 898 Query: 97 cacttctcggtgccggcggggcagtacgcggtggagctggtggccgggcgggagagcgcc 156 |||||| |||||||| |||| | | | || |||||| |||| |||||||||||||| Sbjct: 899 cacttcgcggtgccgcgcgggcggcgc-ctgtcgagctgctggcggggcgggagagcgcg 957 Query: 157 atcgcgcaggtcatccgcaccgt 179 ||||||||||| ||||||||||| Sbjct: 958 atcgcgcaggtgatccgcaccgt 980
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.16 Identities = 28/30 (93%) Strand = Plus / Plus Query: 127 gtggagctggtggccgggcgggagagcgcc 156 |||||||||||||| ||||||| ||||||| Sbjct: 1149625 gtggagctggtggcggggcgggtgagcgcc 1149654
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 cgcggtggagctggtggccgg 143 ||||||||||||||||||||| Sbjct: 765 cgcggtggagctggtggccgg 785
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 cgcggtggagctggtggccgg 143 ||||||||||||||||||||| Sbjct: 24721089 cgcggtggagctggtggccgg 24721109 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 24723200 tcgccgctgccggggtggat 24723219 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 24703256 tcgccgctgccggggtggat 24703275 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgccgctgccggggtggatc 57 |||||||||||||||||||| Sbjct: 14264397 cgccgctgccggggtggatc 14264378
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 cgcggtggagctggtggccgg 143 ||||||||||||||||||||| Sbjct: 886 cgcggtggagctggtggccgg 906
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 cgcggtggagctggtggccgg 143 ||||||||||||||||||||| Sbjct: 110612 cgcggtggagctggtggccgg 110632 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 112723 tcgccgctgccggggtggat 112742 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 92779 tcgccgctgccggggtggat 92798
>ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 682 tcgccgctgccggggtggat 701
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 679 tcgccgctgccggggtggat 698
>ref|XM_959423.1| Neurospora crassa OR74A hypothetical protein (NCU02157.1) partial mRNA Length = 1044 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcggtgcggtacatcgacg 91 |||||||||||||||||||| Sbjct: 492 ggcggtgcggtacatcgacg 511
>ref|XM_329346.1| Neurospora crassa OR74A hypothetical protein (NCU02157.1) partial mRNA Length = 1044 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcggtgcggtacatcgacg 91 |||||||||||||||||||| Sbjct: 492 ggcggtgcggtacatcgacg 511
>gb|AY576486.1| Neurospora crassa COQ4 mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggcggtgcggtacatcgacg 91 |||||||||||||||||||| Sbjct: 492 ggcggtgcggtacatcgacg 511
>gb|AC166566.2| Spironucleus vortens clone JGIBAWF-9N13, complete sequence Length = 39842 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cacttctcggtgccggcggg 116 |||||||||||||||||||| Sbjct: 5537 cacttctcggtgccggcggg 5518
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gtgacgtcgccgctgccggg 50 |||||||||||||||||||| Sbjct: 2880 gtgacgtcgccgctgccggg 2861
>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09, complete sequence Length = 146506 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgccgctgccggggtggatc 57 |||||||||||||||||||| Sbjct: 102162 cgccgctgccggggtggatc 102143
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggtggagctggtggccgggc 145 |||||||||||||||||||| Sbjct: 632420 ggtggagctggtggccgggc 632439
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 agcgccatcgcgcaggtcatccgc 174 ||||||||||||||||| |||||| Sbjct: 3655687 agcgccatcgcgcaggtgatccgc 3655710
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gcggtggagctggtggccgg 143 |||||||||||||||||||| Sbjct: 1135431 gcggtggagctggtggccgg 1135450
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tcgccgctgccggggtggat 56 |||||||||||||||||||| Sbjct: 810 tcgccgctgccggggtggat 829
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 690737 cgccatcgcgcaggtcatc 690719
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 gctcaaggcggtgcggtac 84 ||||||||||||||||||| Sbjct: 1972461 gctcaaggcggtgcggtac 1972443
>ref|NM_192934.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1155 Score = 38.2 bits (19), Expect = 9.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 65 cgctcaaggcggtgcggtacatcgacgcggc 95 ||||||||||||||||| |||||| ||||| Sbjct: 416 cgctcaaggcggtgcgggccatcgaggcggc 446
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 gcggtggagctggtggccg 142 ||||||||||||||||||| Sbjct: 2644608 gcggtggagctggtggccg 2644626
>gb|AY596618.1| Saccharum officinarum clone SCCCCL4009G04, complete sequence Length = 811 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 25 aaggacgtgacgtcgccgctgcc 47 ||||||| ||||||||||||||| Sbjct: 786 aaggacgcgacgtcgccgctgcc 808
>ref|XM_756223.1| Ustilago maydis 521 hypothetical protein (UM05169.1) partial mRNA Length = 2766 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gtgctgctgccgcccaatc 21 ||||||||||||||||||| Sbjct: 2162 gtgctgctgccgcccaatc 2144
>ref|XM_747399.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g11270) partial mRNA Length = 1608 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 cttctcggtgccggcgggg 117 ||||||||||||||||||| Sbjct: 1056 cttctcggtgccggcgggg 1038
>gb|AC004887.2| Homo sapiens PAC clone RP4-789I5 from 7, complete sequence Length = 176929 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 ggtggagctggtggccggg 144 ||||||||||||||||||| Sbjct: 65798 ggtggagctggtggccggg 65780
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 700375 cgccatcgcgcaggtcatc 700393
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 642235 cgccatcgcgcaggtcatc 642253
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 659007 cgccatcgcgcaggtcatc 659025
>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3 Length = 345637 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 cttctcggtgccggcgggg 117 ||||||||||||||||||| Sbjct: 17501 cttctcggtgccggcgggg 17519
>emb|AL606488.15| Mouse DNA sequence from clone RP23-90E8 on chromosome 13 Contains part of a novel gene, complete sequence Length = 188423 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 ggtggagctggtggccggg 144 ||||||||||||||||||| Sbjct: 100683 ggtggagctggtggccggg 100665
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 660206 cgccatcgcgcaggtcatc 660224
>gb|AE005961.1| Caulobacter crescentus CB15 section 287 of 359 of the complete genome Length = 10252 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 gacgtcgccgctgccggggtgga 55 ||||||||||| ||||||||||| Sbjct: 2238 gacgtcgccgcggccggggtgga 2260
>gb|DQ220740.1| Aegilops sharonensis genomic sequence Length = 3804 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gccgctgccggggtggatc 57 ||||||||||||||||||| Sbjct: 3662 gccgctgccggggtggatc 3644
>dbj|AK134613.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330501G13 product:regulating synaptic membrane exocytosis 4, full insert sequence Length = 744 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 124 gcggtggagctggtggccgggcg 146 ||||||| ||||||||||||||| Sbjct: 120 gcggtggggctggtggccgggcg 98
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 65 cgctcaaggcggtgcggtacatcgacgcggc 95 ||||||||||||||||| |||||| ||||| Sbjct: 25231428 cgctcaaggcggtgcgggccatcgaggcggc 25231458
>gb|U82598.1|ECU82598 Escherichia coli genomic sequence of minutes 9 to 12 Length = 136742 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 100414 cgccatcgcgcaggtcatc 100432
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158C05 Length = 145514 Score = 38.2 bits (19), Expect = 9.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 65 cgctcaaggcggtgcggtacatcgacgcggc 95 ||||||||||||||||| |||||| ||||| Sbjct: 28472 cgctcaaggcggtgcgggccatcgaggcggc 28502
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 159 cgcgcaggtcatccgcacc 177 ||||||||||||||||||| Sbjct: 217608 cgcgcaggtcatccgcacc 217626
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 686969 cgccatcgcgcaggtcatc 686951
>dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0035I14 Length = 117919 Score = 38.2 bits (19), Expect = 9.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 65 cgctcaaggcggtgcggtacatcgacgcggc 95 ||||||||||||||||| |||||| ||||| Sbjct: 97437 cgctcaaggcggtgcgggccatcgaggcggc 97467
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 138 ggccgggcgggagagcgccatcg 160 ||||||| ||||||||||||||| Sbjct: 3609731 ggccgggtgggagagcgccatcg 3609709
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 gcggtggagctggtggccg 142 ||||||||||||||||||| Sbjct: 3988263 gcggtggagctggtggccg 3988281
>gb|U60417.1|SPU60417 Streptomyces pristinaespiralis 4-dimethylamino-L-phenylalanine precursor biosynthesis (papA, papC, papB, papM) genes, complete cds Length = 4740 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 ggtggagctggtggccggg 144 ||||||||||||||||||| Sbjct: 2918 ggtggagctggtggccggg 2900
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 gtgacgtcgccgctgccgg 49 ||||||||||||||||||| Sbjct: 689188 gtgacgtcgccgctgccgg 689170
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 740921 cgccatcgcgcaggtcatc 740939
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 741140 cgccatcgcgcaggtcatc 741158
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 532450 cgccatcgcgcaggtcatc 532468
>gb|L07636.1|ECOLIPAB E.coli lipoic acid biosynthesis lipA, lipB, and ORFs 1, 2 and 3 genes, complete cds; dacA gene, 3' end Length = 4534 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 3511 cgccatcgcgcaggtcatc 3493
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 510194 cgccatcgcgcaggtcatc 510212
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 621066 cgccatcgcgcaggtcatc 621084
>gb|M82805.1|ECOLIP Escherichia coli lipoic acid synthetase (lip) gene, complete cds Length = 1445 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 153 cgccatcgcgcaggtcatc 171 ||||||||||||||||||| Sbjct: 465 cgccatcgcgcaggtcatc 447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,038,658 Number of Sequences: 3902068 Number of extensions: 1038658 Number of successful extensions: 81734 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79116 Number of HSP's gapped (non-prelim): 2611 length of query: 199 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 177 effective length of database: 17,147,199,772 effective search space: 3035054359644 effective search space used: 3035054359644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
