| Clone Name | bags27l06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-methionine: L-methionine S-methyltransferase, complete cds Length = 3543 Score = 1261 bits (636), Expect = 0.0 Identities = 636/636 (100%) Strand = Plus / Plus Query: 17 gtggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgt 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2731 gtggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgt 2790 Query: 77 cctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgat 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2791 cctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgat 2850 Query: 137 tatgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccaca 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2851 tatgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccaca 2910 Query: 197 cagcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagca 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2911 cagcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagca 2970 Query: 257 tttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgat 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2971 tttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgat 3030 Query: 317 caagatgcttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgct 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3031 caagatgcttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgct 3090 Query: 377 tgcaaaaccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagct 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3091 tgcaaaaccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagct 3150 Query: 437 ggacagccacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcag 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3151 ggacagccacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcag 3210 Query: 497 cgggtggacaggggtgccggactactgccgcttcagctttgctctggagagcggcgactt 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3211 cgggtggacaggggtgccggactactgccgcttcagctttgctctggagagcggcgactt 3270 Query: 557 cgaccgggccatggagtgcatcgcccggttcagggagctggtccttggtggcggtgctaa 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3271 cgaccgggccatggagtgcatcgcccggttcagggagctggtccttggtggcggtgctaa 3330 Query: 617 ggtgaatggtagcaactaggggttgttgggtgggtc 652 |||||||||||||||||||||||||||||||||||| Sbjct: 3331 ggtgaatggtagcaactaggggttgttgggtgggtc 3366
>ref|XM_475069.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3255 Score = 274 bits (138), Expect = 3e-70 Identities = 441/542 (81%) Strand = Plus / Plus Query: 18 tggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgtc 77 |||||||||||||||||||||||| ||| || | | |||| ||||||||||| || | Sbjct: 2635 tggaatttggaaagatgtctttctgctgtgaattgtccaaaaccctcgttctctgtagct 2694 Query: 78 ctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgatt 137 || |||||||| ||||||||||||||||| | || |||| ||| || |||||||||||| Sbjct: 2695 cttctcggagaactgtcctttgagctgactgctgcagggcatgactttgggtttctgatt 2754 Query: 138 atgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccacac 197 ||| ||||| |||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct: 2755 ttgaatgactcatccttggttgacacatttcacagtttcccaagcttgagtcgtccccac 2814 Query: 198 agcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagcat 257 || ||| ||||||||||||||| || || |||| || ||||| ||||||||| | || Sbjct: 2815 agtacgctgaagtacactttcaaaaaactactgggcctcaagaatcagaaggatgaacac 2874 Query: 258 ttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgatc 317 ||||| ||||||| | ||||||||||| || | |||| |||||| ||||| ||||| Sbjct: 2875 ttctccaatctcattatggagcagaaggacacactaaagagtcgtgctgaccacttgata 2934 Query: 318 aagatgcttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgctt 377 |||| |||||| |||| |||||||| | || ||| | ||||| ||||| |||||||| Sbjct: 2935 aagacacttgagggctgtggctgggatgttgctggcagtcatggtggcatatcgatgctg 2994 Query: 378 gcaaaaccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagctg 437 || |||||||| |||||||| |||||| |||||||||| || ||||| |||||||| Sbjct: 2995 gcgaaaccgactgcctacatcggcaaaataatcaaggtggatggttttgatggcaagcta 3054 Query: 438 gacagccacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcagc 497 || || |||||| | ||||||| | || |||||||||||| ||||||| | ||||||| Sbjct: 3055 gatggctgcaacatcaaggaagccattctcaggtccaccgggttgtgcataaacagcagc 3114 Query: 498 gggtggacaggggtgccggactactgccgcttcagctttgctctggagagcggcgacttc 557 |||||||| | ||||| |||| || ||||||||||||||||||||| |||| ||| Sbjct: 3115 tcatggacaggaataccggatcactgtcggttcagctttgctctggagagcagcgaattc 3174 Query: 558 ga 559 || Sbjct: 3175 ga 3176
>dbj|AK121285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108O11, full insert sequence Length = 3542 Score = 274 bits (138), Expect = 3e-70 Identities = 441/542 (81%) Strand = Plus / Plus Query: 18 tggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgtc 77 |||||||||||||||||||||||| ||| || | | |||| ||||||||||| || | Sbjct: 2713 tggaatttggaaagatgtctttctgctgtgaattgtccaaaaccctcgttctctgtagct 2772 Query: 78 ctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgatt 137 || |||||||| ||||||||||||||||| | || |||| ||| || |||||||||||| Sbjct: 2773 cttctcggagaactgtcctttgagctgactgctgcagggcatgactttgggtttctgatt 2832 Query: 138 atgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccacac 197 ||| ||||| |||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct: 2833 ttgaatgactcatccttggttgacacatttcacagtttcccaagcttgagtcgtccccac 2892 Query: 198 agcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagcat 257 || ||| ||||||||||||||| || || |||| || ||||| ||||||||| | || Sbjct: 2893 agtacgctgaagtacactttcaaaaaactactgggcctcaagaatcagaaggatgaacac 2952 Query: 258 ttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgatc 317 ||||| ||||||| | ||||||||||| || | |||| |||||| ||||| ||||| Sbjct: 2953 ttctccaatctcattatggagcagaaggacacactaaagagtcgtgctgaccacttgata 3012 Query: 318 aagatgcttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgctt 377 |||| |||||| |||| |||||||| | || ||| | ||||| ||||| |||||||| Sbjct: 3013 aagacacttgagggctgtggctgggatgttgctggcagtcatggtggcatatcgatgctg 3072 Query: 378 gcaaaaccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagctg 437 || |||||||| |||||||| |||||| |||||||||| || ||||| |||||||| Sbjct: 3073 gcgaaaccgactgcctacatcggcaaaataatcaaggtggatggttttgatggcaagcta 3132 Query: 438 gacagccacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcagc 497 || || |||||| | ||||||| | || |||||||||||| ||||||| | ||||||| Sbjct: 3133 gatggctgcaacatcaaggaagccattctcaggtccaccgggttgtgcataaacagcagc 3192 Query: 498 gggtggacaggggtgccggactactgccgcttcagctttgctctggagagcggcgacttc 557 |||||||| | ||||| |||| || ||||||||||||||||||||| |||| ||| Sbjct: 3193 tcatggacaggaataccggatcactgtcggttcagctttgctctggagagcagcgaattc 3252 Query: 558 ga 559 || Sbjct: 3253 ga 3254
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 180 bits (91), Expect = 4e-42 Identities = 247/299 (82%) Strand = Plus / Minus Query: 18 tggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgtc 77 |||||||||||||||||||||||| ||| || | | |||| ||||||||||| || | Sbjct: 13317 tggaatttggaaagatgtctttctgctgtgaattgtccaaaaccctcgttctctgtagct 13258 Query: 78 ctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgatt 137 || |||||||| ||||||||||||||||| | || |||| ||| || |||||||||||| Sbjct: 13257 cttctcggagaactgtcctttgagctgactgctgcagggcatgactttgggtttctgatt 13198 Query: 138 atgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccacac 197 ||| ||||| |||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct: 13197 ttgaatgactcatccttggttgacacatttcacagtttcccaagcttgagtcgtccccac 13138 Query: 198 agcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagcat 257 || ||| ||||||||||||||| || || |||| || ||||| ||||||||| | || Sbjct: 13137 agtacgctgaagtacactttcaaaaaactactgggcctcaagaatcagaaggatgaacac 13078 Query: 258 ttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgat 316 ||||| ||||||| | ||||||||||| || | |||| |||||| ||||| ||||| Sbjct: 13077 ttctccaatctcattatggagcagaaggacacactaaagagtcgtgctgaccacttgat 13019 Score = 103 bits (52), Expect = 7e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 324 cttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgcttgcaaaa 383 |||||| |||| |||||||| | || ||| | ||||| ||||| |||||||| || ||| Sbjct: 12683 cttgagggctgtggctgggatgttgctggcagtcatggtggcatatcgatgctggcgaaa 12624 Query: 384 ccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagctggacagc 443 ||||| |||||||| |||||| |||||||||| || ||||| |||||||| || || Sbjct: 12623 ccgactgcctacatcggcaaaataatcaaggtggatggttttgatggcaagctagatggc 12564 Query: 444 cacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcagcgggtgg 503 |||||| | ||||||| | || |||||||||||| ||||||| | ||||||| ||| Sbjct: 12563 tgcaacatcaaggaagccattctcaggtccaccgggttgtgcataaacagcagctcatgg 12504 Query: 504 acaggggtgccggactactgccgcttcagctttgctctggagagcggcgacttcga 559 ||||| | ||||| |||| || ||||||||||||||||||||| |||| ||||| Sbjct: 12503 acaggaataccggatcactgtcggttcagctttgctctggagagcagcgaattcga 12448
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 180 bits (91), Expect = 4e-42 Identities = 247/299 (82%) Strand = Plus / Minus Query: 18 tggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgtc 77 |||||||||||||||||||||||| ||| || | | |||| ||||||||||| || | Sbjct: 237797 tggaatttggaaagatgtctttctgctgtgaattgtccaaaaccctcgttctctgtagct 237738 Query: 78 ctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgatt 137 || |||||||| ||||||||||||||||| | || |||| ||| || |||||||||||| Sbjct: 237737 cttctcggagaactgtcctttgagctgactgctgcagggcatgactttgggtttctgatt 237678 Query: 138 atgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccacac 197 ||| ||||| |||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct: 237677 ttgaatgactcatccttggttgacacatttcacagtttcccaagcttgagtcgtccccac 237618 Query: 198 agcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagcat 257 || ||| ||||||||||||||| || || |||| || ||||| ||||||||| | || Sbjct: 237617 agtacgctgaagtacactttcaaaaaactactgggcctcaagaatcagaaggatgaacac 237558 Query: 258 ttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgat 316 ||||| ||||||| | ||||||||||| || | |||| |||||| ||||| ||||| Sbjct: 237557 ttctccaatctcattatggagcagaaggacacactaaagagtcgtgctgaccacttgat 237499 Score = 103 bits (52), Expect = 7e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 324 cttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgcttgcaaaa 383 |||||| |||| |||||||| | || ||| | ||||| ||||| |||||||| || ||| Sbjct: 237163 cttgagggctgtggctgggatgttgctggcagtcatggtggcatatcgatgctggcgaaa 237104 Query: 384 ccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagctggacagc 443 ||||| |||||||| |||||| |||||||||| || ||||| |||||||| || || Sbjct: 237103 ccgactgcctacatcggcaaaataatcaaggtggatggttttgatggcaagctagatggc 237044 Query: 444 cacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcagcgggtgg 503 |||||| | ||||||| | || |||||||||||| ||||||| | ||||||| ||| Sbjct: 237043 tgcaacatcaaggaagccattctcaggtccaccgggttgtgcataaacagcagctcatgg 236984 Query: 504 acaggggtgccggactactgccgcttcagctttgctctggagagcggcgacttcga 559 ||||| | ||||| |||| || ||||||||||||||||||||| |||| ||||| Sbjct: 236983 acaggaataccggatcactgtcggttcagctttgctctggagagcagcgaattcga 236928
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 180 bits (91), Expect = 4e-42 Identities = 247/299 (82%) Strand = Plus / Minus Query: 18 tggaatttggaaagatgtctttctaatgtcaagtcttcaaagccctcgttctccgttgtc 77 |||||||||||||||||||||||| ||| || | | |||| ||||||||||| || | Sbjct: 119981 tggaatttggaaagatgtctttctgctgtgaattgtccaaaaccctcgttctctgtagct 119922 Query: 78 ctgctcggagagctgtcctttgagctgaccacggctgggcttgatttcgggtttctgatt 137 || |||||||| ||||||||||||||||| | || |||| ||| || |||||||||||| Sbjct: 119921 cttctcggagaactgtcctttgagctgactgctgcagggcatgactttgggtttctgatt 119862 Query: 138 atgagcgactcgtccttggttgacacattttacagtttcccaagcttgagtcggccacac 197 ||| ||||| |||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct: 119861 ttgaatgactcatccttggttgacacatttcacagtttcccaagcttgagtcgtccccac 119802 Query: 198 agcacgttgaagtacactttcaggaagctgttgggtcttaagaaccagaaggatcagcat 257 || ||| ||||||||||||||| || || |||| || ||||| ||||||||| | || Sbjct: 119801 agtacgctgaagtacactttcaaaaaactactgggcctcaagaatcagaaggatgaacac 119742 Query: 258 ttctctgatctcatccttgagcagaaggagacgttgaagaatcgtgccgaccagttgat 316 ||||| ||||||| | ||||||||||| || | |||| |||||| ||||| ||||| Sbjct: 119741 ttctccaatctcattatggagcagaaggacacactaaagagtcgtgctgaccacttgat 119683 Score = 103 bits (52), Expect = 7e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 324 cttgagagctgcggctgggacgctgtgggctgccatggcggcatctcgatgcttgcaaaa 383 |||||| |||| |||||||| | || ||| | ||||| ||||| |||||||| || ||| Sbjct: 119347 cttgagggctgtggctgggatgttgctggcagtcatggtggcatatcgatgctggcgaaa 119288 Query: 384 ccgaccgcctacattggcaaatcgctcaaggtggacggctttgagggcaagctggacagc 443 ||||| |||||||| |||||| |||||||||| || ||||| |||||||| || || Sbjct: 119287 ccgactgcctacatcggcaaaataatcaaggtggatggttttgatggcaagctagatggc 119228 Query: 444 cacaacatgagggaagccctcctgaggtccaccgggctgtgcattagcagcagcgggtgg 503 |||||| | ||||||| | || |||||||||||| ||||||| | ||||||| ||| Sbjct: 119227 tgcaacatcaaggaagccattctcaggtccaccgggttgtgcataaacagcagctcatgg 119168 Query: 504 acaggggtgccggactactgccgcttcagctttgctctggagagcggcgacttcga 559 ||||| | ||||| |||| || ||||||||||||||||||||| |||| ||||| Sbjct: 119167 acaggaataccggatcactgtcggttcagctttgctctggagagcagcgaattcga 119112
>gb|AF144079.1|AF144079 Zea mays S-adenosyl-L-methionine:L-methionine S-methyltransferase mRNA, complete cds Length = 3527 Score = 174 bits (88), Expect = 2e-40 Identities = 244/296 (82%) Strand = Plus / Plus Query: 53 ttcaaagccctcgttctccgttgtcctgctcggagagctgtcctttgagctgaccacggc 112 |||| |||| |||||||| || ||||||||||||||||||||||||| |||||| | | Sbjct: 2703 ttcagagccatcgttctctgtggtcctgctcggagagctgtcctttgcgctgactgcagg 2762 Query: 113 tgggcttgatttcgggtttctgattatgagcgactcgtccttggttgacacattttacag 172 ||||| ||| || |||||| |||| || | |||||||| |||| ||| || || | || Sbjct: 2763 tgggcatgactttgggtttgtgatattgggtgactcgtcgttggctgagacgttccatag 2822 Query: 173 tttcccaagcttgagtcggccacacagcacgttgaagtacactttcaggaagctgttggg 232 ||| | ||||||||||| || |||| ||| |||||||||||||||| ||||||| |||| Sbjct: 2823 tttttctagcttgagtcgaccgcacaccacattgaagtacactttcaagaagctgctggg 2882 Query: 233 tcttaagaaccagaaggatcagcatttctctgatctcatccttgagcagaaggagacgtt 292 ||||||||||||||||| ||||||||||| ||||| || | |||||||||||| | | Sbjct: 2883 gcttaagaaccagaaggaccagcatttctcggatctgatagtggagcagaaggaggagct 2942 Query: 293 gaagaatcgtgccgaccagttgatcaagatgcttgagagctgcggctgggacgctg 348 ||||||||| ||| |||||||||| ||| || |||||||| |||||||| |||| Sbjct: 2943 gaagaatcgcgccaaccagttgatacagacactggagagctgtggctgggaagctg 2998 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 454 gggaagccctcctgaggtccaccgggctgtgcattagcagcagcgggtggacaggggtgc 513 |||||||| |||||||| |||| ||||||||||| | ||||||| ||||| ||| | | Sbjct: 3104 gggaagccatcctgagggccactgggctgtgcataaacagcagctcctggacggggatcc 3163 Query: 514 cggactactgccgcttcagctttgctctggagagcggcgacttcgaccgggccatggagt 573 | | ||||||||| |||||||||||||||||||| || || ||||| || || |||| | Sbjct: 3164 ctggctactgccggttcagctttgctctggagaggggggaattcgagcgtgcgatgggat 3223 Query: 574 gcatcgcccggttcagggagctggt 598 |||| || ||||||| ||||||||| Sbjct: 3224 gcatagctcggttcaaggagctggt 3248
>gb|AY109558.1| Zea mays CL1511_1 mRNA sequence Length = 3458 Score = 163 bits (82), Expect = 9e-37 Identities = 242/296 (81%) Strand = Plus / Plus Query: 53 ttcaaagccctcgttctccgttgtcctgctcggagagctgtcctttgagctgaccacggc 112 |||| |||| |||||||| || ||||||||||||||||||||||||| |||||| | | Sbjct: 2703 ttcagagccatcgttctctgtggtcctgctcggagagctgtcctttgcgctgactgcagg 2762 Query: 113 tgggcttgatttcgggtttctgattatgagcgactcgtccttggttgacacattttacag 172 ||||| ||| || |||||| ||| || | |||||||| |||| ||| || || | || Sbjct: 2763 tgggcatgactttgggtttgngatattgggtgactcgtcgttggctgagacgttccatag 2822 Query: 173 tttcccaagcttgagtcggccacacagcacgttgaagtacactttcaggaagctgttggg 232 || | ||||||||||| || |||| ||| |||||||||||||||| ||||||| |||| Sbjct: 2823 nttttctagcttgagtcgaccgcacaccacattgaagtacactttcaagaagctgctggg 2882 Query: 233 tcttaagaaccagaaggatcagcatttctctgatctcatccttgagcagaaggagacgtt 292 ||||||||||||||||| ||||||||||| ||||| || | |||||||||||| | | Sbjct: 2883 gcttaagaaccagaaggaccagcatttctcggatctgatagtggagcagaaggaggagct 2942 Query: 293 gaagaatcgtgccgaccagttgatcaagatgcttgagagctgcggctgggacgctg 348 ||||||||| ||| |||||||||| ||| || |||||||| |||||||| |||| Sbjct: 2943 gaagaatcgcgccaaccagttgatacagacactggagagctgtggctgggaagctg 2998 Score = 73.8 bits (37), Expect = 6e-10 Identities = 79/93 (84%) Strand = Plus / Plus Query: 454 gggaagccctcctgaggtccaccgggctgtgcattagcagcagcgggtggacaggggtgc 513 |||||||| |||||||| |||| ||||||||||| | ||||||| ||||| ||| | | Sbjct: 3104 gggaagccatcctgagggccactgggctgtgcataaacagcagctcctggacggggatcc 3163 Query: 514 cggactactgccgcttcagctttgctctggaga 546 | | ||||||||| ||||||||||||||||||| Sbjct: 3164 ctggctactgccggttcagctttgctctggaga 3196
>emb|AL954642.9| Human DNA sequence from clone RP11-885N19 on chromosome 9 Contains the 3' end of the CACNA1B gene for alpha 1B subunit of L type voltage-dependent calcium channel, a pseudogene similar to part of interleukin 9 receptor (ILR9), a tubulin, beta polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG islands, complete sequence Length = 154372 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 38798 ggaagccctcctgaggtccac 38778
>emb|AL713922.12| Human DNA sequence from clone RP11-631M21 on chromosome 10 Contains a novel gene, the gene for a novel protein similar to beta-tubulin 4Q (TUBB4Q) (LOC253936), the interleukin 9 receptor (IL9R) pseudogene (IL9RP2), the 5' end of the gene for adenovirus 5 E1A binding protein (BS69), a novel pseudogene (FLJ40100) and four CpG islands, complete sequence Length = 164405 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 67002 ggaagccctcctgaggtccac 67022
>emb|AL591424.12| Human DNA sequence from clone RP11-424E7 on chromosome 9 Contains the 3' end of the CACNA1B gene for alpha 1B subunit of L type voltage-dependent calcium channel, a pseudogene similar to part of interleukin 9 receptor (ILR9), a tubulin, beta polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG islands, complete sequence Length = 201853 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 49515 ggaagccctcctgaggtccac 49535
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catggcggcatctcgatgctt 377 ||||||||||||||||||||| Sbjct: 2417236 catggcggcatctcgatgctt 2417256
>emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region; segment 2/2 Length = 158661 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 137476 ggaagccctcctgaggtccac 137456
>gb|AE006462.1| Homo sapiens 16p13.3 sequence section 1 of 8 Length = 258002 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 20038 ggaagccctcctgaggtccac 20058
>gb|AC010552.6| Homo sapiens chromosome 16 clone RP11-568F1, complete sequence Length = 202889 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 89246 ggaagccctcctgaggtccac 89266
>gb|AY071830.1| Homo sapiens interleukin 9 receptor (IL9R) gene, complete cds Length = 15446 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 13577 ggaagccctcctgaggtccac 13557
>ref|NG_002764.1| Homo sapiens interleukin 9 receptor pseudogene 4 (IL9RP4) on chromosome 18 Length = 7317 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 731 ggaagccctcctgaggtccac 751
>emb|Z96384.1|HS18PT017 H.sapiens telomeric DNA sequence, clone 18PTEL017, read 18PTELOO017.seq Length = 1164 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 136 ggaagccctcctgaggtccac 156
>dbj|AP001005.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-683L23, complete sequence Length = 137001 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 64599 ggaagccctcctgaggtccac 64619
>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence Length = 212724 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 atgtctttctaatgtcaagtc 52 ||||||||||||||||||||| Sbjct: 51700 atgtctttctaatgtcaagtc 51680
>gb|L39064.1|HUMIL9RA Homo sapiens interleukin 9 receptor precursor (IL9R) gene, complete cds Length = 17073 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 13727 ggaagccctcctgaggtccac 13707
>gb|L39063.1|HUMIL9RPS Homo sapiens interleukin 9 receptor (IL9R) pseudogene, exons 1-9 Length = 10550 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 8456 ggaagccctcctgaggtccac 8436
>gb|L39062.1|HUMIL9R Homo sapiens interleukin 9 receptor IL9R pseudogene, exons 1-9 Length = 13649 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 9632 ggaagccctcctgaggtccac 9612
>emb|Z84723.1|HSLAW2 Human DNA sequence from phage LAW2 from a contig from the tip of the short arm of chromosome 16, spanning 2Mb of 16p13.3 Contains Interleukin 9 receptor pseudogene Length = 17000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 9400 ggaagccctcctgaggtccac 9420
>gb|M84017.1|HUMSUBTDB Human subtelomeric DNA sequence Length = 750 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 587 ggaagccctcctgaggtccac 607
>gb|M84016.1|HUMSUBTDA Human subtelomeric DNA sequence Length = 2930 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggaagccctcctgaggtccac 475 ||||||||||||||||||||| Sbjct: 631 ggaagccctcctgaggtccac 651
>gb|AC121303.24| Mus musculus chromosome 8, clone RP23-335A5, complete sequence Length = 205158 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 acactttcaggaagctgttg 230 |||||||||||||||||||| Sbjct: 101589 acactttcaggaagctgttg 101608
>gb|AC006366.4| Homo sapiens BAC clone RP11-86G22 from Y, complete sequence Length = 166458 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cagcatttctctgatctcat 271 |||||||||||||||||||| Sbjct: 88421 cagcatttctctgatctcat 88440
>emb|CR733867.2|CNS0GT16 Tetraodon nigroviridis full-length cDNA Length = 1777 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 gctgcggctgggacgctgtgggct 354 |||| ||||||||||||||||||| Sbjct: 740 gctggggctgggacgctgtgggct 763
>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence Length = 171537 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 atcagcatttctctgatctcatcc 273 |||| ||||||||||||||||||| Sbjct: 149572 atcaccatttctctgatctcatcc 149549
>gb|AC146202.3| Pan troglodytes BAC clone RP43-35A11 from 7, complete sequence Length = 161532 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 atcagcatttctctgatctcatcc 273 |||| ||||||||||||||||||| Sbjct: 132474 atcaccatttctctgatctcatcc 132451
>emb|AL512368.9| Human DNA sequence from clone RP11-387L5 on chromosome 6, complete sequence Length = 147619 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 atgtctttctaatgtcaagt 51 |||||||||||||||||||| Sbjct: 127716 atgtctttctaatgtcaagt 127697
>emb|AL353574.8| Human DNA sequence from clone RP11-551M18 on chromosome 13 Contains the 5' end of the SLC15A1 gene for solute carrier family 15 (oligopeptide transporter) member 1 and a CpG island, complete sequence Length = 89515 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aaagatgtctttctaatgtc 47 |||||||||||||||||||| Sbjct: 82876 aaagatgtctttctaatgtc 82895
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 gaatttggaaagatgtctttctaa 43 |||||||||||||||||| ||||| Sbjct: 1410171 gaatttggaaagatgtctatctaa 1410148
>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence Length = 184007 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 atcagcatttctctgatctcatcc 273 |||| ||||||||||||||||||| Sbjct: 159621 atcaccatttctctgatctcatcc 159598
>gb|AC148314.3| Pan troglodytes BAC clone CH251-527C13 from chromosome 7, complete sequence Length = 172090 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 atcagcatttctctgatctcatcc 273 |||| ||||||||||||||||||| Sbjct: 48637 atcaccatttctctgatctcatcc 48614
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gggcaagctggacagccaca 447 |||||||||||||||||||| Sbjct: 3335666 gggcaagctggacagccaca 3335647
>gb|AC154351.2| Mus musculus BAC clone RP24-536C5 from chromosome 17, complete sequence Length = 188013 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 aggatcagcatttctctgatctca 270 |||||||||||||||||| ||||| Sbjct: 185083 aggatcagcatttctctgttctca 185060
>gb|AC022459.6|AC022459 Homo sapiens BAC clone RP11-28I21 from 1, complete sequence Length = 163291 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 atcagcatttctctgatctcatcc 273 |||| ||||||||||||||||||| Sbjct: 20167 atcaccatttctctgatctcatcc 20144
>gb|AC011238.8| Homo sapiens BAC clone RP11-374C5 from 2, complete sequence Length = 155764 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 cagcagcgggtggacaggggtgcc 514 ||||||||||||| |||||||||| Sbjct: 69914 cagcagcgggtgggcaggggtgcc 69891
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cagcatttctctgatctcat 271 |||||||||||||||||||| Sbjct: 1129054 cagcatttctctgatctcat 1129035
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 cagcagcgggtggacagggg 510 |||||||||||||||||||| Sbjct: 2383259 cagcagcgggtggacagggg 2383240
>emb|CT030001.16| Mouse DNA sequence from clone RP23-225D15 on chromosome 17, complete sequence Length = 180961 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 aggatcagcatttctctgatctca 270 |||||||||||||||||| ||||| Sbjct: 33348 aggatcagcatttctctgttctca 33371
>emb|AL935336.11| Mouse DNA sequence from clone RP23-273K21 on chromosome 4, complete sequence Length = 168599 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 atttctctgatctcatcctt 275 |||||||||||||||||||| Sbjct: 90202 atttctctgatctcatcctt 90221 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,917,186 Number of Sequences: 3902068 Number of extensions: 4917186 Number of successful extensions: 89962 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89724 Number of HSP's gapped (non-prelim): 233 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)