>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor|
           (Clone PC13III)
          Length = 320

 Score =  132 bits (332), Expect = 6e-31
 Identities = 64/79 (81%), Positives = 66/79 (83%)
 Frame = +3

Query: 15  MLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYY 194
           ML DGA+EYEDG PATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF          YY
Sbjct: 242 MLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYY 301

Query: 195 RRMRWSVLKSRKLVLDVVN 251
           RR+RWSVLKSRKLVLDVVN
Sbjct: 302 RRLRWSVLKSRKLVLDVVN 320

>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor|
           (Clone PC18I) (Fragment)
          Length = 260

 Score =  131 bits (330), Expect = 1e-30
 Identities = 63/79 (79%), Positives = 66/79 (83%)
 Frame = +3

Query: 15  MLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYY 194
           ML DGA+EYEDG PATEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF          YY
Sbjct: 182 MLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYY 241

Query: 195 RRMRWSVLKSRKLVLDVVN 251
           RR+RWSVLKSRKLVLDVVN
Sbjct: 242 RRLRWSVLKSRKLVLDVVN 260

>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 332

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 40/76 (52%), Positives = 54/76 (71%)
 Frame = +3

Query: 15  MLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYY 194
           +L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG+K +           Y 
Sbjct: 237 VLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYV 296

Query: 195 RRMRWSVLKSRKLVLD 242
           +R +W+ LKSRK+V D
Sbjct: 297 KRYKWAWLKSRKIVYD 312

>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 309

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 33/76 (43%), Positives = 50/76 (65%)
 Frame = +3

Query: 15  MLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYY 194
           +L D  +EYEDGTPAT +QM KDV +FL+W AEPE +ERK +G+K +           + 
Sbjct: 228 VLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWV 287

Query: 195 RRMRWSVLKSRKLVLD 242
           ++ +W+ +K+RK V +
Sbjct: 288 KKFKWAGIKTRKFVFN 303

>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 292

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 33/76 (43%), Positives = 50/76 (65%)
 Frame = +3

Query: 15  MLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYY 194
           +L D  +EYEDGTPAT +QM KDV +FL W +EPE +ERK +G+K +           + 
Sbjct: 213 VLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWV 272

Query: 195 RRMRWSVLKSRKLVLD 242
           ++ +W+ +KSRK+V +
Sbjct: 273 KKFKWASIKSRKIVFN 288

>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 34/67 (50%), Positives = 45/67 (67%)
 Frame = +3

Query: 33  IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWS 212
           +EY+DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K +             +R +WS
Sbjct: 253 LEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWS 312

Query: 213 VLKSRKL 233
           VLKSRKL
Sbjct: 313 VLKSRKL 319

>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome|
           c-1)
          Length = 241

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 34/67 (50%), Positives = 45/67 (67%)
 Frame = +3

Query: 33  IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWS 212
           +E++DGTPAT +Q+ KDV +FL WAAEPE + RK MG+K +             +R +WS
Sbjct: 169 LEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWS 228

Query: 213 VLKSRKL 233
           VLKSRKL
Sbjct: 229 VLKSRKL 235

>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 33/67 (49%), Positives = 45/67 (67%)
 Frame = +3

Query: 33  IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWS 212
           +E++DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K +             +R +WS
Sbjct: 253 LEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWS 312

Query: 213 VLKSRKL 233
           VLKSRKL
Sbjct: 313 VLKSRKL 319

>CY1_EUGGR (P20114) Cytochrome c1, heme protein|
          Length = 243

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 34/78 (43%), Positives = 41/78 (52%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYR 197
           L D  IEYEDGTPA+  QM KDV  FL W + P  +ERKL+G K I           YY 
Sbjct: 163 LTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYN 222

Query: 198 RMRWSVLKSRKLVLDVVN 251
           R    + +SR+L     N
Sbjct: 223 RFLSGLWRSRRLAFRPFN 240

>CY1_RHORU (P23135) Cytochrome c1 precursor|
          Length = 272

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 149
           LMD  I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K
Sbjct: 204 LMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247

>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]|
          Length = 687

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 143
           L DG + Y+DG+PAT AQ  KDV +FL W AEP ME RK +G
Sbjct: 620 LSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLG 661

>CY1_RHOCA (P08501) Cytochrome c1 precursor|
          Length = 279

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/71 (39%), Positives = 38/71 (53%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYR 197
           L+D  + YEDGTPAT  QM +DV +FL WAAEP++  RK MG+  +              
Sbjct: 208 LVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTN 267

Query: 198 RMRWSVLKSRK 230
           +  W+  K  K
Sbjct: 268 KRLWAPYKGHK 278

>CY1_PARDE (P13627) Cytochrome c1 precursor|
          Length = 450

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 26/68 (38%), Positives = 34/68 (50%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYR 197
           L D  + YEDGTPAT  QM  DV +FL W AEP+M +RK +G   +              
Sbjct: 377 LSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTN 436

Query: 198 RMRWSVLK 221
           +  W  +K
Sbjct: 437 KKLWQPIK 444

>CY1_RHOVI (P81379) Cytochrome c1 precursor|
          Length = 282

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 143
           + DG + Y DGTP T+ Q  KDV +FL WAAEP ++ RK +G
Sbjct: 211 IADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252

>CY1_RHOSH (Q02760) Cytochrome c1 precursor|
          Length = 285

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 18  LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYR 197
           LMD  +EY DG  A+   M +DV +FL WAAEP++  RK  G   +              
Sbjct: 211 LMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTN 270

Query: 198 RMRWSVLKSRK 230
           +  W+ +K +K
Sbjct: 271 KRLWAGVKGKK 281

>MLTE_BUCAI (P57352) Membrane-bound lytic murein transglycosylase E (EC|
           3.2.1.-) (Murein hydrolase E)
          Length = 221

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +1

Query: 364 LGTISFVFFLCCKSISLKGAVIFEYFFAS*YLNGTNILL------TEELMKFINALKKK 522
           +GT S++ FL  K IS+K   +  Y     Y+NGT+ LL       +E +  IN + KK
Sbjct: 146 IGT-SYISFLQKKFISIKNKDVMRYAIIVAYVNGTSALLKTFSKSRKEAINIINTMTKK 203

>IMB3_MOUSE (Q8BKC5) Importin beta-3 (Karyopherin beta-3) (Ran-binding protein|
           5) (RanBP5)
          Length = 1097

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 509 AFMNFINSSVRSMLVPFRYQLAKKYSKITAPLREMLLQQRKKTKEIVPKV*WETTRVAKY 330
           A +NF     +S+L+P+   L K    I     + L+Q  K TK ++ +V      VA  
Sbjct: 465 ALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQ--KGTKLVLEQVVTSIASVADT 522

Query: 329 TTES--PYFDRF 300
             E   PY+D F
Sbjct: 523 AEEKFVPYYDLF 534

>IMB3_HUMAN (O00410) Importin beta-3 (Karyopherin beta-3) (Ran-binding protein|
           5) (RanBP5)
          Length = 1097

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 509 AFMNFINSSVRSMLVPFRYQLAKKYSKITAPLREMLLQQRKKTKEIVPKV*WETTRVAKY 330
           A +NF     +S+L+P+   L K    I     + L+Q  K TK ++ +V      VA  
Sbjct: 465 ALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQ--KGTKLVLEQVVTSIASVADT 522

Query: 329 TTES--PYFDRF 300
             E   PY+D F
Sbjct: 523 AEEKFVPYYDLF 534

>SC11A_HUMAN (Q9UI33) Sodium channel protein type 11 alpha subunit (Sodium channel|
            protein type XI alpha subunit) (Voltage-gated sodium
            channel alpha subunit Nav1.9) (Sensory neuron sodium
            channel 2) (Peripheral nerve sodium channel 5) (hNaN)
          Length = 1791

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 358  HTLGTISFVFFLCCKSISLK----GAVIFEYFFAS*YLNGTNILLTEELMKFINALKK 519
            ++LG I FV F+   S        G +I  +      L G +I +TEE  K+ NA+KK
Sbjct: 1281 NSLGYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDIFMTEEQKKYYNAMKK 1338

>RSH1_MAIZE (Q41853) Homeobox protein rough sheath 1|
          Length = 351

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
 Frame = -2

Query: 458 RYQLAKKYSKITAPLREMLLQQRKKTKEIVPK------V*W-----------ETTRVAKY 330
           +YQL KKYS   + LR+   +++KK K  +PK      + W           ET ++A  
Sbjct: 234 KYQLLKKYSGYLSSLRQEFSKKKKKGK--LPKEARQKLLHWWELHYKWPYPSETEKIA-- 289

Query: 329 TTESPYFDRFCLKTRCCNRKKKQWSLVDDV 240
             ES   D+  +     N++K+ W   +D+
Sbjct: 290 LAESTGLDQKQINNWFINQRKRHWKPSEDM 319

>NCAH_DROME (P42325) Neurocalcin homolog (DrosNCa)|
          Length = 189

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 367 GTISFVFFLCCKSISLKGAV--IFEYFFAS*YLNGTNILLTEELMKFINALKK 519
           GTI F  FLC  S++ +G +    ++ F+   L+G   +  +E+++ + A+ K
Sbjct: 77  GTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIYK 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,842,314
Number of Sequences: 219361
Number of extensions: 1475932
Number of successful extensions: 4015
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4013
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)