| Clone Name | bags27k11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY090551.1| Deschampsia antarctica clone Dacor 1.1 cytochrome c1 precursor mRNA, 3' UTR and partial cds Length = 418 Score = 515 bits (260), Expect = e-143 Identities = 369/404 (91%), Gaps = 1/404 (0%) Strand = Plus / Plus Query: 27 ggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtc 86 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggagctgttgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtt 60 Query: 87 gtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggtgtc 146 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtgtcattcttgtcatgggcggctgagcctgaaatggaagagaggaaactgatgggtgtc 120 Query: 147 aaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatgagg 206 |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 121 aaatggatcttcctactgtcacttgcacttatccaagctgcatactaccgtcgcatgagg 180 Query: 207 tggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaactagtgaccattgttt 266 ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 181 tggtcggtcctcaagtcccgcaagctggtcctggatgtcgtcaactgatgaccattgttt 240 Query: 267 cttctttctattgcaacatcgagtctttaagcagaagcgatcgaaataaggactttccgt 326 ||||||| || | |||| | |||||||||||||||||| |||||||||| ||||||| || Sbjct: 241 cttctttttactacaacgttgagtctttaagcagaagctatcgaaataatgactttctgt 300 Query: 327 tgtatattttgctactctggttgtctcccatcataccttgggtacaatctcttttgtttt 386 |||| ||||||| ||| |||||||||||||||| || || || ||| |||| |||||| Sbjct: 301 tgtacattttgccactggggttgtctcccatcatcccctgcctagaatttcttctgtttt 360 Query: 387 cttcctctgctgcaaaagcatttctcttaagggagcagttattt 430 | || ||||||||||||||||||||| |||||||||||||||| Sbjct: 361 cctcttctgctgcaaaagcatttctc-caagggagcagttattt 403
>dbj|AK070578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061F14, full insert sequence Length = 1367 Score = 341 bits (172), Expect = 1e-90 Identities = 236/256 (92%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccagatg 74 |||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 880 atgcttatagatggagctgttgaatatgaagatggtactcctgccactgaagcccagatg 939 Query: 75 ggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaa 134 |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct: 940 ggcaaggatgtcgtttcgttcttgtcatgggcagctgaacctgagatggaagagaggaaa 999 Query: 135 ctgatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactac 194 |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1000 ctgatgggagtgaaatggatcttcctactgtcacttgcacttctccaagccgcatactac 1059 Query: 195 cgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaact-a 253 ||||||||||||||||| ||||| ||||| |||||||||||||| || || ||||||| | Sbjct: 1060 cgtcgcatgaggtggtccgtcctgaagtcacgcaagctggtccttgatgttgtcaactga 1119 Query: 254 gtgaccattgtttctt 269 | ||||| |||||||| Sbjct: 1120 gggaccactgtttctt 1135 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 381 tgttttcttcctctgctgcaaaagcattt 409 ||||||||||||||||||||||||||||| Sbjct: 1234 tgttttcttcctctgctgcaaaagcattt 1262
>gb|BT016510.1| Zea mays clone Contig343 mRNA sequence Length = 1417 Score = 268 bits (135), Expect = 2e-68 Identities = 223/251 (88%), Gaps = 1/251 (0%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||| ||| ||||||| ||||||||| |||||||||| |||||||| |||||||| Sbjct: 785 gccatgccgaag-atgcttaatgatggagctgttgagtatgaggatggtacacctgcaac 843 Query: 62 tgaagcccagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaat 121 ||||||||||||||| ||||||||||| || ||| | |||||||||||||||||||| || Sbjct: 844 tgaagcccagatgggtaaggatgtcgtatcattcctttcgtgggcagctgagcctgagat 903 Query: 122 ggaagagaggaaactgatgggtgtcaaatggatcttcctactgtcacttgctcttctcca 181 ||||||||| || |||||||| || ||||||||||| ||||| ||||| || |||||||| Sbjct: 904 ggaagagagaaagctgatgggagtgaaatggatctttctactatcactagcgcttctcca 963 Query: 182 agccgcatactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctgga 241 ||| || |||||||| |||||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 964 agctgcctactaccgccgcatgaggtggtcagtcctgaagtcccgaaagctggtcctgga 1023 Query: 242 cgtcgtcaact 252 |||||||||| Sbjct: 1024 tgtcgtcaact 1034
>gb|AY103572.1| Zea mays PCO092029 mRNA sequence Length = 1394 Score = 240 bits (121), Expect = 4e-60 Identities = 202/229 (88%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 850 gatggagctgttgagtatgaggatggtactcctgcaactgaagcccagatgggtaaggat 909 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 || || || ||| | || ||||||||||||||||| ||||||||||| || |||||||| Sbjct: 910 gttgtatcattcctttcatgggcagctgagcctgagatggaagagagaaagctgatggga 969 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 || ||||||||||| ||||| ||||| || ||||| ||||| ||||||||||| |||||| Sbjct: 970 gtgaaatggatctttctactatcactagcgcttcttcaagctgcatactaccgccgcatg 1029 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaact 252 |||||||| ||| | |||||||| |||||||||||||| || ||||||| Sbjct: 1030 aggtggtcagtcttgaagtcccgtaagctggtcctggatgttgtcaact 1078
>gb|BT012926.1| Lycopersicon esculentum clone 114089R, mRNA sequence Length = 1382 Score = 186 bits (94), Expect = 5e-44 Identities = 202/238 (84%) Strand = Plus / Plus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccagatg 74 ||||||| ||||| ||| |||||||||||||||||| ||||||||||| || || ||| Sbjct: 893 atgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatg 952 Query: 75 ggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaa 134 || || ||||| |||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 953 ggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaag 1012 Query: 135 ctgatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactac 194 ||||||||| |||||||||| ||| | | |||||||| ||||||||||| || |||||| Sbjct: 1013 ctgatgggtttcaaatggatattcgtcttatcacttgcacttctccaagcagcttactac 1072 Query: 195 cgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaact 252 |||||| |||| ||||||||||| || || ||||| ||||||| || || ||||||| Sbjct: 1073 cgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaact 1130
>ref|NM_190059.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 176 bits (89), Expect = 5e-41 Identities = 201/237 (84%), Gaps = 1/237 (0%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||| ||| |||||||| |||||||| | |||||||||||||| ||||| || || Sbjct: 664 gccatgcccaag-atgcttattgatggagcagtcgagtatgaagatggcactccagctac 722 Query: 62 tgaagcccagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaat 121 |||||||||||||| || ||||| || ||||||||||| ||||| || |||||||| || Sbjct: 723 agaagcccagatgggaaaagatgttgtctcgttcttgtcatgggcggcggagcctgagat 782 Query: 122 ggaagagaggaaactgatgggtgtcaaatggatcttcctactgtcacttgctcttctcca 181 ||||||||| ||||||||||| || |||||||| || ||||| || || || ||||| || Sbjct: 783 ggaagagagaaaactgatgggagtgaaatggatttttctactctccctcgcacttctgca 842 Query: 182 agccgcatactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcct 238 ||| ||||| ||||| ||||||| |||||| ||| |||||| |||||||||||||| Sbjct: 843 agctgcatattaccggcgcatgaagtggtccgtctacaagtcgcgcaagctggtcct 899
>dbj|AK069403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013M20, full insert sequence Length = 1379 Score = 176 bits (89), Expect = 5e-41 Identities = 201/237 (84%), Gaps = 1/237 (0%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||| ||| |||||||| |||||||| | |||||||||||||| ||||| || || Sbjct: 812 gccatgcccaag-atgcttattgatggagcagtcgagtatgaagatggcactccagctac 870 Query: 62 tgaagcccagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaat 121 |||||||||||||| || ||||| || ||||||||||| ||||| || |||||||| || Sbjct: 871 agaagcccagatgggaaaagatgttgtctcgttcttgtcatgggcggcggagcctgagat 930 Query: 122 ggaagagaggaaactgatgggtgtcaaatggatcttcctactgtcacttgctcttctcca 181 ||||||||| ||||||||||| || |||||||| || ||||| || || || ||||| || Sbjct: 931 ggaagagagaaaactgatgggagtgaaatggatttttctactctccctcgcacttctgca 990 Query: 182 agccgcatactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcct 238 ||| ||||| ||||| ||||||| |||||| ||| |||||| |||||||||||||| Sbjct: 991 agctgcatattaccggcgcatgaagtggtccgtctacaagtcgcgcaagctggtcct 1047
>gb|AY805120.1| Ornithogalum virens clone 3OvF39 putative cytochrome c1 precursor protein mRNA, partial cds Length = 923 Score = 168 bits (85), Expect = 1e-38 Identities = 187/221 (84%) Strand = Plus / Plus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccagatg 74 |||||||| ||||||||| | ||||||||||||||||| |||||||||||||| |||||| Sbjct: 319 atgcttatagatggagctttagagtatgaagatggtacccctgcaactgaagctcagatg 378 Query: 75 ggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaa 134 || ||||| ||||| || || || ||||||||||| ||||| || ||||||||| | ||| Sbjct: 379 gggaaggacgtcgtttcatttttatcgtgggcagcggagcccgagatggaagagcgcaaa 438 Query: 135 ctgatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactac 194 |||||||| |||||||||| ||| | || ||||| || || || ||||| | ||| ||| Sbjct: 439 ctgatgggattcaaatggattttcgtgctatcactggcgctccttcaagctggatattac 498 Query: 195 cgtcgcatgaggtggtctgtcctcaagtcccgcaagctggt 235 ||||| || ||||||||||| ||||||| ||||||||||| Sbjct: 499 cgtcgtttgcggtggtctgtcttcaagtcacgcaagctggt 539
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 163 bits (82), Expect = 7e-37 Identities = 122/134 (91%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 137 gatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccg 196 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 93428 gatgggagtgaaatggatcttcctactgtcacttgcacttctccaagccgcatactaccg 93369 Query: 197 tcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaact-agt 255 ||||||||||||||| ||||| ||||| |||||||||||||| || || ||||||| || Sbjct: 93368 tcgcatgaggtggtccgtcctgaagtcacgcaagctggtccttgatgttgtcaactgagg 93309 Query: 256 gaccattgtttctt 269 ||||| |||||||| Sbjct: 93308 gaccactgtttctt 93295 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 69 cagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagag 128 |||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| Sbjct: 93580 cagatgggcaaggatgtcgtttcgttcttgtcatgggcagctgaacctgagatggaagag 93521 Query: 129 aggaaactg 137 ||||||||| Sbjct: 93520 aggaaactg 93512 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccag 71 |||||||| ||||||||| |||| |||||||||||||||||||| |||||||||||| Sbjct: 93728 atgcttatagatggagctgttgaatatgaagatggtactcctgccactgaagcccag 93672 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 381 tgttttcttcctctgctgcaaaagcattt 409 ||||||||||||||||||||||||||||| Sbjct: 93196 tgttttcttcctctgctgcaaaagcattt 93168 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 454 tacctgaatggtaccaacatacttctaacagaa 486 |||||||||||||||| || |||||||||||| Sbjct: 93133 tacctgaatggtaccagcaagcttctaacagaa 93101
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 163 bits (82), Expect = 7e-37 Identities = 122/134 (91%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 137 gatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccg 196 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 13409965 gatgggagtgaaatggatcttcctactgtcacttgcacttctccaagccgcatactaccg 13409906 Query: 197 tcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaact-agt 255 ||||||||||||||| ||||| ||||| |||||||||||||| || || ||||||| || Sbjct: 13409905 tcgcatgaggtggtccgtcctgaagtcacgcaagctggtccttgatgttgtcaactgagg 13409846 Query: 256 gaccattgtttctt 269 ||||| |||||||| Sbjct: 13409845 gaccactgtttctt 13409832 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 69 cagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagag 128 |||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| Sbjct: 13410117 cagatgggcaaggatgtcgtttcgttcttgtcatgggcagctgaacctgagatggaagag 13410058 Query: 129 aggaaactg 137 ||||||||| Sbjct: 13410057 aggaaactg 13410049 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccag 71 |||||||| ||||||||| |||| |||||||||||||||||||| |||||||||||| Sbjct: 13410265 atgcttatagatggagctgttgaatatgaagatggtactcctgccactgaagcccag 13410209 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 381 tgttttcttcctctgctgcaaaagcattt 409 ||||||||||||||||||||||||||||| Sbjct: 13409733 tgttttcttcctctgctgcaaaagcattt 13409705 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 454 tacctgaatggtaccaacatacttctaacagaa 486 |||||||||||||||| || |||||||||||| Sbjct: 13409670 tacctgaatggtaccagcaagcttctaacagaa 13409638
>gb|AY088099.1| Arabidopsis thaliana clone 41320 mRNA, complete sequence Length = 1361 Score = 147 bits (74), Expect = 4e-32 Identities = 191/230 (83%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 807 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 866 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || |||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 867 attgtatcattcttggcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 926 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || || Sbjct: 927 ttcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgactg 986 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 987 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 1036
>ref|NM_113638.2| Arabidopsis thaliana electron transporter/ electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex AT3G27240 mRNA, complete cds Length = 1414 Score = 139 bits (70), Expect = 1e-29 Identities = 190/230 (82%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 829 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 888 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || |||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 889 attgtatcattcttggcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 948 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || | Sbjct: 949 ttcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgacta 1008 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 1009 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 1058
>gb|AF458338.1|AF458338 Arabidopsis thaliana AT3g27240/K17E12_6 mRNA, complete cds Length = 924 Score = 139 bits (70), Expect = 1e-29 Identities = 190/230 (82%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 694 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 753 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || |||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 754 attgtatcattcttggcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 813 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || | Sbjct: 814 ttcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgacta 873 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 874 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 923
>gb|AY054246.1| Arabidopsis thaliana AT3g27240/K17E12_6 mRNA, complete cds Length = 1414 Score = 139 bits (70), Expect = 1e-29 Identities = 190/230 (82%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 829 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 888 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || |||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 889 attgtatcattcttggcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 948 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || | Sbjct: 949 ttcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgacta 1008 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 1009 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 1058
>emb|BX824887.1|CNS0A6WM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZA02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1297 Score = 139 bits (70), Expect = 1e-29 Identities = 190/230 (82%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 778 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 837 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || |||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 838 attgtatcattcttggcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 897 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || | Sbjct: 898 ttcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgacta 957 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 958 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 1007
>emb|BX824618.1|CNS0A4TF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZA03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1238 Score = 139 bits (70), Expect = 1e-29 Identities = 190/230 (82%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 777 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 836 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || |||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 837 attgtatcattcttggcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 896 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || | Sbjct: 897 ttcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgacta 956 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 957 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 1006
>emb|BX823783.1|CNS0A6LU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1366 Score = 131 bits (66), Expect = 3e-27 Identities = 189/230 (82%) Strand = Plus / Plus Query: 24 gatggagctattgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggat 83 |||| |||| ||||||||||||||||| || || || || || |||||||| || ||| Sbjct: 795 gatgaagctgttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagat 854 Query: 84 gtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggt 143 | || || ||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 855 attgtatcattcttcgcctgggcagctgaaccagaaatggaagagaggaaactgatgggt 914 Query: 144 gtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatg 203 |||||||||| |||||||| || || |||||||||||||| || |||||| | || | Sbjct: 915 ctcaaatggatattcctactctctctcgctcttctccaagctgcttactacaggcgacta 974 Query: 204 aggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 975 aaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 1024
>gb|BT014041.1| Lycopersicon esculentum clone 133106F, mRNA sequence Length = 1437 Score = 127 bits (64), Expect = 4e-26 Identities = 184/224 (82%) Strand = Plus / Plus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccagatg 74 ||||||| ||||| ||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 843 atgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatg 902 Query: 75 ggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaa 134 || || ||||| ||||| || || | ||||| ||||| || |||||||||||||| ||| Sbjct: 903 gggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaa 962 Query: 135 ctgatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactac 194 |||||||| |||| ||||| || ||||||| ||||| || || ||||| || |||||| Sbjct: 963 ctgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactac 1022 Query: 195 cgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcct 238 | || ||||||||||||| |||||||| || ||||||||||| Sbjct: 1023 aggcgtttgaggtggtctgttctcaagtcacgtaagctggtcct 1066
>ref|NM_123446.3| Arabidopsis thaliana electron transporter/ electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex AT5G40810 mRNA, complete cds Length = 1366 Score = 119 bits (60), Expect = 1e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 39 tatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtcgtgtcgttcttg 98 ||||||||||| ||||||||||| ||||| |||||||| || ||||| || || |||||| Sbjct: 834 tatgaagatggaactcctgcaacagaagcacagatgggtaaagatgttgtatccttcttg 893 Query: 99 tcgtgggcagctgagcctgaaatggaagagaggaaactgatgggtgtcaaatggatcttc 158 || ||||||||||| || || ||||||||||||||| ||||||| |||||||||| ||| Sbjct: 894 tcctgggcagctgaaccagagatggaagagaggaaattgatggggttcaaatggatattc 953 Query: 159 ctactgtc 166 ||||||| Sbjct: 954 ttactgtc 961
>gb|AY116937.1| Arabidopsis thaliana AT5g40810/MHK7_4 mRNA, complete cds Length = 924 Score = 119 bits (60), Expect = 1e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 39 tatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtcgtgtcgttcttg 98 ||||||||||| ||||||||||| ||||| |||||||| || ||||| || || |||||| Sbjct: 709 tatgaagatggaactcctgcaacagaagcacagatgggtaaagatgttgtatccttcttg 768 Query: 99 tcgtgggcagctgagcctgaaatggaagagaggaaactgatgggtgtcaaatggatcttc 158 || ||||||||||| || || ||||||||||||||| ||||||| |||||||||| ||| Sbjct: 769 tcctgggcagctgaaccagagatggaagagaggaaattgatggggttcaaatggatattc 828 Query: 159 ctactgtc 166 ||||||| Sbjct: 829 ttactgtc 836
>gb|AY050340.1| Arabidopsis thaliana AT5g40810/MHK7_4 mRNA, complete cds Length = 1238 Score = 119 bits (60), Expect = 1e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 39 tatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtcgtgtcgttcttg 98 ||||||||||| ||||||||||| ||||| |||||||| || ||||| || || |||||| Sbjct: 781 tatgaagatggaactcctgcaacagaagcacagatgggtaaagatgttgtatccttcttg 840 Query: 99 tcgtgggcagctgagcctgaaatggaagagaggaaactgatgggtgtcaaatggatcttc 158 || ||||||||||| || || ||||||||||||||| ||||||| |||||||||| ||| Sbjct: 841 tcctgggcagctgaaccagagatggaagagaggaaattgatggggttcaaatggatattc 900 Query: 159 ctactgtc 166 ||||||| Sbjct: 901 ttactgtc 908
>emb|BX829693.1|CNS0A056 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1241 Score = 119 bits (60), Expect = 1e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 39 tatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtcgtgtcgttcttg 98 ||||||||||| ||||||||||| ||||| |||||||| || ||||| || || |||||| Sbjct: 834 tatgaagatggaactcctgcaacagaagcacagatgggtaaagatgttgtatccttcttg 893 Query: 99 tcgtgggcagctgagcctgaaatggaagagaggaaactgatgggtgtcaaatggatcttc 158 || ||||||||||| || || ||||||||||||||| ||||||| |||||||||| ||| Sbjct: 894 tcctgggcagctgaaccagagatggaagagaggaaattgatggggttcaaatggatattc 953 Query: 159 ctactgtc 166 ||||||| Sbjct: 954 ttactgtc 961
>emb|X79597.1|STCYC1 S.tuberosum (Desiree) cyc1 II mRNA. for cytochrome c1 Length = 1014 Score = 119 bits (60), Expect = 1e-23 Identities = 183/224 (81%) Strand = Plus / Plus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccagatg 74 ||||||| ||||| ||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 546 atgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatg 605 Query: 75 ggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaa 134 || || ||||| ||||| || || | ||||| ||||| || || ||||||||||| ||| Sbjct: 606 gggaaagatgtggtgtcatttttaacttgggctgctgaaccagagatggaagagagaaaa 665 Query: 135 ctgatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactac 194 |||||||| |||| ||||| || ||||||| ||||| || || ||||| || |||||| Sbjct: 666 ctgatgggcttcaagtggatatttgtactgtcccttgcactacttcaagctgcttactac 725 Query: 195 cgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcct 238 | || ||||||||||||| |||||||| || ||||||||||| Sbjct: 726 aggcgtttgaggtggtctgttctcaagtcacggaagctggtcct 769
>emb|BX824810.1|CNS0A6Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1267 Score = 113 bits (57), Expect = 6e-22 Identities = 181/221 (81%), Gaps = 1/221 (0%) Strand = Plus / Plus Query: 34 ttgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtcgtgtcgt 93 ||||||||||||||||| || || || || || |||||||| || ||| | || || | Sbjct: 762 ttgagtatgaagatggtgtccccgccacagaggcacagatgggtaaagatattgtatcat 821 Query: 94 tcttgtcgtgggcagctgagcctgaaatggaagagaggaaactga-tgggtgtcaaatgg 152 ||||| | ||||||||||| || |||||||||||||||||||||| ||||| |||||||| Sbjct: 822 tcttggcctgggcagctgaaccagaaatggaagagaggaaactgattgggtttcaaatgg 881 Query: 153 atcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatgaggtggtct 212 || |||||||| | || |||||||||||||| || |||||| | || | | ||||| Sbjct: 882 atattcctactatatctcgctcttctccaagctgcttactacaggcgactaaaatggtcg 941 Query: 213 gtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 || |||||||||||||||||||| || ||||| || ||||| Sbjct: 942 gttctcaagtcccgcaagctggttcttgacgtggttaacta 982
>emb|X62124.1|STCYC1G S.tuberosum cycl gene encoding cytochrome c1 Length = 1264 Score = 101 bits (51), Expect = 2e-18 Identities = 177/219 (80%) Strand = Plus / Plus Query: 34 ttgagtatgaagatggtactcctgcaactgaagcccagatgggcaaggatgtcgtgtcgt 93 |||||||||| ||||| | |||||||| || || |||||||| || ||||| || || | Sbjct: 855 ttgagtatgaggatggcatccctgcaaccgaggcacagatgggaaaagatgttgtctcat 914 Query: 94 tcttgtcgtgggcagctgagcctgaaatggaagagaggaaactgatgggtgtcaaatgga 153 ||||||| ||||| || ||||| || ||||||||||| || ||||||||| ||||||||| Sbjct: 915 tcttgtcctgggctgcggagccagagatggaagagagaaagctgatgggtttcaaatgga 974 Query: 154 tcttcctactgtcacttgctcttctccaagccgcatactaccgtcgcatgaggtggtctg 213 | || | | || || || ||||||||||| || |||||||| || |||| ||||||| Sbjct: 975 tatttgttttatctctcgcacttctccaagcagcttactaccgccgtttgagatggtctg 1034 Query: 214 tcctcaagtcccgcaagctggtcctggacgtcgtcaact 252 ||||||| || |||||| |||| || || || ||||||| Sbjct: 1035 tcctcaaatctcgcaagttggttcttgatgttgtcaact 1073
>gb|L41695.1|PS300038E Eucalyptus globulus bicostata symbiont (F00060) mRNA, ESTun038 Length = 330 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Plus Query: 15 atgcttatggatggagctattgagtatgaagatggtactcctgcaactgaagcccagatg 74 |||||||| ||||| ||| | |||||||||||||| || || ||||| ||||| |||||| Sbjct: 94 atgcttattgatggtgctgtcgagtatgaagatgggaccccagcaacagaagctcagatg 153 Query: 75 ggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagaggaaa 134 || || |||||||| | ||||| || ||||| || || |||||||||||||| || || Sbjct: 154 gggaaagatgtcgtaacattcttatcatgggctgcagaacctgaaatggaagaaagaaag 213 Query: 135 ctgatgggtgtcaaatggat 154 |||||||| |||||||||| Sbjct: 214 ctgatgggattcaaatggat 233
>gb|DQ294620.1| Arachis hypogaea cytochrome c1-like mRNA, partial sequence Length = 615 Score = 81.8 bits (41), Expect = 2e-12 Identities = 117/141 (82%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 ||||||||||| ||||||| ||||| ||| |||| ||||| ||||||||||| || || Sbjct: 367 gccatgcctaaa-atgcttaacgatggtgctgttgaatatgaggatggtactcccgccac 425 Query: 62 tgaagcccagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaat 121 |||| | |||||||| || ||||| ||||| ||||| || ||||| || || || || || Sbjct: 426 tgaatctcagatggggaaagatgttgtgtcattcttatcttgggctgccgaaccggagat 485 Query: 122 ggaagagaggaaactgatggg 142 ||||||||| ||||||||||| Sbjct: 486 ggaagagagaaaactgatggg 506 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 189 tactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtc 248 |||||||||||| | ||||||||||| || ||||| ||||||||||| || || |||||| Sbjct: 553 tactaccgtcgccttaggtggtctgttctaaagtctcgcaagctggttcttgatgtcgtc 612 Query: 249 aa 250 || Sbjct: 613 aa 614
>dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12 Length = 63604 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 137 gatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccg 196 ||||||| |||||||||| |||||||| || || |||||||||||||| || |||||| | Sbjct: 20130 gatgggtttcaaatggatattcctactctctctcgctcttctccaagctgcttactacag 20071 Query: 197 tcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctggacgtcgtcaacta 253 || | | ||||| || |||||||||||||||||||| || ||||| || ||||| Sbjct: 20070 gcgactaaaatggtcggttctcaagtcccgcaagctggttcttgacgtggttaacta 20014 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 93 ttcttgtcgtgggcagctgagcctgaaatggaagagaggaaactg 137 |||||| | ||||||||||| || ||||||||||||||||||||| Sbjct: 20472 ttcttggcctgggcagctgaaccagaaatggaagagaggaaactg 20428
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 137 gatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccg 196 |||||| || |||||||| || ||||| || || || ||||| ||||| ||||| ||||| Sbjct: 41071188 gatgggagtgaaatggatttttctactctccctcgcacttctgcaagctgcatattaccg 41071247 Query: 197 tcgcatgaggtggtctgtcctcaagtcccgcaagctggtcct 238 ||||||| |||||| ||| |||||| |||||||||||||| Sbjct: 41071248 gcgcatgaagtggtccgtctacaagtcgcgcaagctggtcct 41071289 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 70 agatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagaga 129 ||||||| || ||||| || ||||||||||| ||||| || |||||||| |||||||||| Sbjct: 41071037 agatgggaaaagatgttgtctcgttcttgtcatgggcggcggagcctgagatggaagaga 41071096 Query: 130 ggaaactg 137 | |||||| Sbjct: 41071097 gaaaactg 41071104 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/70 (85%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||| ||| |||||||| |||||||| | |||||||||||||| ||||| || || Sbjct: 41070874 gccatgcccaag-atgcttattgatggagcagtcgagtatgaagatggcactccagctac 41070932 Query: 62 tgaagcccag 71 ||||||||| Sbjct: 41070933 agaagcccag 41070942 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 atcataccttgggtacaatct 376 ||||||||||||||||||||| Sbjct: 13388389 atcataccttgggtacaatct 13388369
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 137 gatgggtgtcaaatggatcttcctactgtcacttgctcttctccaagccgcatactaccg 196 |||||| || |||||||| || ||||| || || || ||||| ||||| ||||| ||||| Sbjct: 108118 gatgggagtgaaatggatttttctactctccctcgcacttctgcaagctgcatattaccg 108177 Query: 197 tcgcatgaggtggtctgtcctcaagtcccgcaagctggtcct 238 ||||||| |||||| ||| |||||| |||||||||||||| Sbjct: 108178 gcgcatgaagtggtccgtctacaagtcgcgcaagctggtcct 108219 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 70 agatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagaga 129 ||||||| || ||||| || ||||||||||| ||||| || |||||||| |||||||||| Sbjct: 107967 agatgggaaaagatgttgtctcgttcttgtcatgggcggcggagcctgagatggaagaga 108026 Query: 130 ggaaactg 137 | |||||| Sbjct: 108027 gaaaactg 108034 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/70 (85%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||| ||| |||||||| |||||||| | |||||||||||||| ||||| || || Sbjct: 107804 gccatgcccaag-atgcttattgatggagcagtcgagtatgaagatggcactccagctac 107862 Query: 62 tgaagcccag 71 ||||||||| Sbjct: 107863 agaagcccag 107872
>gb|S66866.1|S66866 Solanum tuberosum cytochrome c1 precursor, gene, complete cds; mitochondrial gene for mitochondrial product Length = 6007 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 174 cttctccaagccgcatactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctg 233 ||||||||||| || |||||||| || |||| |||||||||||||| || |||||| || Sbjct: 5463 cttctccaagcagcttactaccgccgtttgagatggtctgtcctcaaatctcgcaagttg 5522 Query: 234 gtcctggacgtcgtcaact 252 ||||| || || ||||||| Sbjct: 5523 gtccttgatgttgtcaact 5541 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 72 atgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagagag 130 ||||| || ||||| || || |||||||| ||||| |||||||| || ||||||||||| Sbjct: 5058 atgggaaaagatgttgtctcattcttgtcatgggctgctgagccagagatggaagagag 5116
>dbj|AB011477.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHK7 Length = 78181 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 69 cagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagag 128 |||||||| || ||||| || || |||||||| ||||||||||| || || ||||||||| Sbjct: 16113 cagatgggtaaagatgttgtatccttcttgtcctgggcagctgaaccagagatggaagag 16172 Query: 129 aggaaa 134 |||||| Sbjct: 16173 aggaaa 16178 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 tatgaagatggtactcctgcaactgaagc 67 ||||||||||| ||||||||||| ||||| Sbjct: 15963 tatgaagatggaactcctgcaacagaagc 15991
>gb|AC185524.1| Medicago truncatula clone mth2-62g23, complete sequence Length = 40651 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 69 cagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagag 128 |||||||| || ||||| ||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 10454 cagatggggaaagatgttgtgtcatttttgtcttgggcagcggaacctgagatggaagag 10513 Query: 129 aggaaactg 137 || |||||| Sbjct: 10514 agaaaactg 10522 Score = 52.0 bits (26), Expect = 0.002 Identities = 57/66 (86%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||||||| ||||||| ||||| ||| |||| |||||||||||||| ||||| || Sbjct: 10275 gccatgcctaag-atgcttaatgatggcgctgttgaatatgaagatggtacccctgctac 10333 Query: 62 tgaagc 67 ||||| Sbjct: 10334 cgaagc 10339 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Plus Query: 180 caagccgcatactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctg 239 |||||||||||||| ||||| | |||||||||| || ||||| |||||| |||| || Sbjct: 10646 caagccgcatactatcgtcgtcttcggtggtctgttcttaagtctcgcaagttggttctt 10705 Query: 240 gacgtcgtcaactag 254 || || ||||||||| Sbjct: 10706 gatgttgtcaactag 10720
>gb|AC138464.19| Medicago truncatula clone mth2-29i23, complete sequence Length = 134105 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 69 cagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagag 128 |||||||| || ||||| ||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 106846 cagatggggaaagatgttgtgtcatttttgtcttgggcagcggaacctgagatggaagag 106905 Query: 129 aggaaactg 137 || |||||| Sbjct: 106906 agaaaactg 106914 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 69 cagatgggcaaggatgtcgtgtcgttcttgtcgtgggcagctgagcctgaaatggaagag 128 |||||||| || ||||| ||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 78037 cagatggggaaagatgttgtgtcatttttgtcttgggcagcagaacctgagatggaagag 78096 Query: 129 aggaaactg 137 || |||||| Sbjct: 78097 agaaaactg 78105 Score = 52.0 bits (26), Expect = 0.002 Identities = 57/66 (86%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 2 gccatgcctaagcatgcttatggatggagctattgagtatgaagatggtactcctgcaac 61 |||||||||||| ||||||| ||||| ||| |||| |||||||||||||| ||||| || Sbjct: 106667 gccatgcctaag-atgcttaatgatggcgctgttgaatatgaagatggtacccctgctac 106725 Query: 62 tgaagc 67 ||||| Sbjct: 106726 cgaagc 106731 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Plus Query: 180 caagccgcatactaccgtcgcatgaggtggtctgtcctcaagtcccgcaagctggtcctg 239 |||||||||||||| ||||| | |||||||||| || ||||| |||||| |||| || Sbjct: 107038 caagccgcatactatcgtcgtcttcggtggtctgttcttaagtctcgcaagttggttctt 107097 Query: 240 gacgtcgtcaactag 254 || || ||||||||| Sbjct: 107098 gatgttgtcaactag 107112
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 176422 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 374 tctcttttgttttcttcctctg 395 |||||||||||||||||||||| Sbjct: 83099 tctcttttgttttcttcctctg 83078
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete sequence Length = 205589 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Plus Query: 108 gctgagcctgaaatggaagagaggaaactgatgg 141 |||||| ||||||||||| |||||||||||||| Sbjct: 36878 gctgagactgaaatggaaatgaggaaactgatgg 36911
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 atcataccttgggtacaatct 376 ||||||||||||||||||||| Sbjct: 84537 atcataccttgggtacaatct 84517
>gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosome 7, complete sequence Length = 157795 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 gagaggaaactgatgggtgtc 146 ||||||||||||||||||||| Sbjct: 66559 gagaggaaactgatgggtgtc 66539
>emb|BX927158.14| Zebrafish DNA sequence from clone DKEY-106K1 in linkage group 5, complete sequence Length = 144909 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 tggttgtctcccatcataccttggg 368 |||| |||||||||||||||||||| Sbjct: 34603 tggtggtctcccatcataccttggg 34579
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 atctcttttgttttcttcctc 393 ||||||||||||||||||||| Sbjct: 186991 atctcttttgttttcttcctc 186971
>emb|AL590503.11| Mouse DNA sequence from clone RP23-128M23 on chromosome 13, complete sequence Length = 169547 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 tcaaatggatcttcctactgt 165 ||||||||||||||||||||| Sbjct: 112358 tcaaatggatcttcctactgt 112378
>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence Length = 183066 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ctgaaatggaagagaggaaac 135 ||||||||||||||||||||| Sbjct: 103592 ctgaaatggaagagaggaaac 103612
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 gtgggcagctgagcctgaaatggaa 125 |||||||||||||||||| |||||| Sbjct: 522260 gtgggcagctgagcctgagatggaa 522284
>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence Length = 212484 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 gagaggaaactgatgggtgtc 146 ||||||||||||||||||||| Sbjct: 15264 gagaggaaactgatgggtgtc 15284
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 atcataccttgggtacaatct 376 ||||||||||||||||||||| Sbjct: 7913411 atcataccttgggtacaatct 7913431
>gb|AY177663.1| Homo sapiens desmoglein 4 preproprotein (DSG4) gene, complete cds Length = 37140 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 ctgaaatggaagagaggaaac 135 ||||||||||||||||||||| Sbjct: 29300 ctgaaatggaagagaggaaac 29280
>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1111_G12 Length = 112664 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 atcataccttgggtacaatct 376 ||||||||||||||||||||| Sbjct: 32942 atcataccttgggtacaatct 32922
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 atcataccttgggtacaatct 376 ||||||||||||||||||||| Sbjct: 128747 atcataccttgggtacaatct 128727
>dbj|AP003499.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-178H8, complete sequence Length = 193227 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 ccattgtttcttctttctatt 278 ||||||||||||||||||||| Sbjct: 31087 ccattgtttcttctttctatt 31107
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 atcataccttgggtacaatct 376 ||||||||||||||||||||| Sbjct: 7983498 atcataccttgggtacaatct 7983518
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete sequence Length = 188772 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ctgagcctgaaatggaagagaggaa 133 ||||||||||||||| ||||||||| Sbjct: 154647 ctgagcctgaaatgggagagaggaa 154671
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tgggcagctgagcctgaaatggaa 125 |||||||||||||| ||||||||| Sbjct: 332057 tgggcagctgagccggaaatggaa 332080
>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete sequence Length = 168197 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tggaagagaggaaactgatgggtg 144 ||||||||||||||||||| |||| Sbjct: 123518 tggaagagaggaaactgatcggtg 123541
>gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, complete sequence Length = 209459 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 tctcttttgttttcttcctctgct 397 ||||||| |||||||||||||||| Sbjct: 187567 tctctttagttttcttcctctgct 187590
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 tgggcagctgagcctgaaatggaa 125 |||||||||||||| ||||||||| Sbjct: 1068537 tgggcagctgagccagaaatggaa 1068514
>emb|AL365444.11| Human DNA sequence from clone RP11-115P16 on chromosome 1 Contains the 3' UTR of a novel gene (DKFZp761P211), the ITPKB gene for inositol 1,4,5-trisphosphate 3-kinase B, two novel genes, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene and a CpG island, complete sequence Length = 181144 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gtggtctgtcctcaagtccc 225 |||||||||||||||||||| Sbjct: 144686 gtggtctgtcctcaagtccc 144667
>emb|AL133475.14| Human DNA sequence from clone RP3-357D13 on chromosome 6 Contains the 5' end of the ELOVL4 gene for elongation of very long chain fatty acids (FEN1/ELo2, SUR4/ELo3, yeast)-like 4, a GAPD (glyceraldehyde-3-phosphate dehydrogenase) pseudogene, an RPL35A (60S ribosomal protein L35A) pseudogene, the TTK gene for TTK protein kinase and a putative CpG island, complete sequence Length = 119318 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ttgtatattttgctactctg 345 |||||||||||||||||||| Sbjct: 52518 ttgtatattttgctactctg 52499
>ref|XM_961529.1| PREDICTED: Tribolium castaneum similar to CG9924-PC, isoform C (LOC655033), mRNA Length = 1563 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tgaaatggaagagaggaaac 135 |||||||||||||||||||| Sbjct: 918 tgaaatggaagagaggaaac 937
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence Length = 134519 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ttcttctttctattgcaaca 284 |||||||||||||||||||| Sbjct: 18098 ttcttctttctattgcaaca 18079
>gb|AC109821.5| Homo sapiens BAC clone RP11-509D19 from 4, complete sequence Length = 106123 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 ctctggttgtctcccatcat 360 |||||||||||||||||||| Sbjct: 20747 ctctggttgtctcccatcat 20728
>gb|AC095053.3| Homo sapiens BAC clone RP11-352E8 from 4, complete sequence Length = 112123 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ctgcaactgaagcccagatg 74 |||||||||||||||||||| Sbjct: 20691 ctgcaactgaagcccagatg 20710
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 gtgggcagctgagcctgaaatgga 124 |||||| ||||||||||||||||| Sbjct: 416142 gtgggctgctgagcctgaaatgga 416165
>gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115345 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gtgaccattgtttcttcttt 273 |||||||||||||||||||| Sbjct: 43413 gtgaccattgtttcttcttt 43432
>dbj|AK024933.1| Homo sapiens cDNA: FLJ21280 fis, clone COL01884 Length = 2604 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gtgaccattgtttcttcttt 273 |||||||||||||||||||| Sbjct: 2197 gtgaccattgtttcttcttt 2178
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 agtgaccattgtttcttctt 272 |||||||||||||||||||| Sbjct: 3750921 agtgaccattgtttcttctt 3750940
>emb|AL133168.6|CNS01DU7 Human chromosome 14 DNA sequence BAC R-187K17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195115 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 tcttttgttttcttcctctg 395 |||||||||||||||||||| Sbjct: 52220 tcttttgttttcttcctctg 52201
>emb|AL669851.8| Mouse DNA sequence from clone RP23-18K13 on chromosome X, complete sequence Length = 204557 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ctcttttgttttcttcctct 394 |||||||||||||||||||| Sbjct: 22494 ctcttttgttttcttcctct 22475 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,343,289 Number of Sequences: 3902068 Number of extensions: 5343289 Number of successful extensions: 115635 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115283 Number of HSP's gapped (non-prelim): 342 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)