ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags27k08 |
|---|---|
| Clone Library Name | barley_pub |
>PDI_HORVU (P80284) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| (Endosperm protein E-1) Length = 513 Score = 336 bits (862), Expect(2) = 1e-92 Identities = 166/166 (100%), Positives = 166/166 (100%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD Sbjct: 202 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 261 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF Sbjct: 262 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 321 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKLT 545 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKLT Sbjct: 322 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKLT 367 Score = 23.5 bits (49), Expect(2) = 1e-92 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = +1 Query: 13 AEKLRSDYDFG 45 AEKLRS YDFG Sbjct: 190 AEKLRSYYDFG 200
>PDI_WHEAT (P52589) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 515 Score = 320 bits (819), Expect(2) = 9e-89 Identities = 158/166 (95%), Positives = 161/166 (96%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 TVHANHLPRGDAAVERP+VRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVV FDKNPD Sbjct: 203 TVHANHLPRGDAAVERPLVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVTFDKNPD 262 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHPYLLK+FQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIE+SQGAF Sbjct: 263 NHPYLLKYFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIEASQGAF 322 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKLT 545 QY GLK DQAPLILIQD DSKKFLKE VEAGQIVAWLKDYFDGKLT Sbjct: 323 QYNGLKEDQAPLILIQDSDSKKFLKEQVEAGQIVAWLKDYFDGKLT 368 Score = 26.9 bits (58), Expect(2) = 9e-89 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = +1 Query: 13 AEKLRSDYDFG 45 AEKLRSDYDFG Sbjct: 191 AEKLRSDYDFG 201
>PDI_MAIZE (P52588) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 513 Score = 292 bits (747), Expect(2) = 2e-80 Identities = 141/166 (84%), Positives = 153/166 (92%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 T+HANHLPRGDAAVERP+VRL KPFDELVVDSKDFDV+AL KFIDAS+ P+VV FDKNPD Sbjct: 199 TLHANHLPRGDAAVERPLVRLLKPFDELVVDSKDFDVAALMKFIDASTIPRVVTFDKNPD 258 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHPYL+KFFQS+APKAMLFLNFSTGPF+SFKSAY A EEF K++KFLIGDIE+SQGAF Sbjct: 259 NHPYLMKFFQSSAPKAMLFLNFSTGPFDSFKSAYSAAAEEFKDKEIKFLIGDIEASQGAF 318 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKLT 545 QYFGLK DQ PLILIQDGDSKKFLK HVEA QIVAWLK+YFDGKLT Sbjct: 319 QYFGLKEDQTPLILIQDGDSKKFLKVHVEADQIVAWLKEYFDGKLT 364 Score = 26.9 bits (58), Expect(2) = 2e-80 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = +1 Query: 13 AEKLRSDYDFG 45 AEKLRSDYDFG Sbjct: 187 AEKLRSDYDFG 197
>PDI_MEDSA (P29828) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 512 Score = 209 bits (533), Expect(2) = 4e-55 Identities = 99/165 (60%), Positives = 126/165 (76%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 T++A HLP+GD++V PVVRLFKPFDEL VDSKDF+V ALEKFI+ SSTP V +F+ P Sbjct: 198 TLNAKHLPKGDSSVSGPVVRLFKPFDELFVDSKDFNVEALEKFIEESSTPIVTVFNNEPS 257 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHP+++KFF S KAMLF+NF+T ESFK+ Y+ E++ + V FL+GD+ESSQGAF Sbjct: 258 NHPFVVKFFNSPNAKAMLFINFTTEGAESFKTKYHEVAEQYKQQGVSFLVGDVESSQGAF 317 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKL 542 QYFGLK +Q PLI+IQ D KKF K ++E Q+ WLK Y DGK+ Sbjct: 318 QYFGLKEEQVPLIIIQHNDGKKFFKPNLELDQLPTWLKAYKDGKV 362 Score = 24.6 bits (52), Expect(2) = 4e-55 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = +1 Query: 13 AEKLRSDYDF 42 AEKLRSDYDF Sbjct: 186 AEKLRSDYDF 195
>PDI_DATGL (Q9XF61) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 507 Score = 196 bits (498), Expect(2) = 3e-51 Identities = 95/166 (57%), Positives = 124/166 (74%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 T+ A LPRG+++V PVVRLFKPFDEL VD +DFDV+ALEK ++ SS P V IFDK+P Sbjct: 198 TLDAKLLPRGESSVSGPVVRLFKPFDELFVDFQDFDVNALEKLVEESSVPTVTIFDKDPS 257 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHP+++KFF + KAMLFLNF++ ESF+S Y E+ G+ + FLIGD ESSQGAF Sbjct: 258 NHPFVVKFFNNANAKAMLFLNFTSEVVESFRSIYREVAEKNKGEGISFLIGDTESSQGAF 317 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKLT 545 QYFGL+ DQ PLI+IQ+ D K+LK ++E I +W+K+Y D KL+ Sbjct: 318 QYFGLRDDQVPLIVIQNNDGTKYLKPNLEPDHIASWVKEYKDCKLS 363 Score = 25.4 bits (54), Expect(2) = 3e-51 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +1 Query: 13 AEKLRSDYDFG 45 AEKLRSDY+FG Sbjct: 186 AEKLRSDYEFG 196
>PDI1_ARATH (Q9XI01) Probable protein disulfide-isomerase 1 precursor (EC| 5.3.4.1) (PDI 1) Length = 501 Score = 193 bits (491), Expect = 2e-49 Identities = 94/165 (56%), Positives = 119/165 (72%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 T A LPRG+++V PVVRLFKPFDE VDSKDFD ALEKF+ SS P + +FDK+P+ Sbjct: 195 TSDAKLLPRGESSVTGPVVRLFKPFDEQFVDSKDFDGEALEKFVKESSIPLITVFDKDPN 254 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHPY++KFF+S KAMLF+NF+ ES KS Y G+ + FL+GD E+SQGAF Sbjct: 255 NHPYVIKFFESTNTKAMLFINFTGEGAESLKSKYREVATSNKGQGLSFLLGDAENSQGAF 314 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKL 542 QYFGL+ Q PLI+IQ D KK+LK +VE QI +W+KD+ DGK+ Sbjct: 315 QYFGLEESQVPLIIIQTADDKKYLKTNVEVDQIESWVKDFKDGKI 359
>PDI_RICCO (Q43116) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 498 Score = 191 bits (484), Expect(2) = 2e-49 Identities = 89/165 (53%), Positives = 120/165 (72%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 T+ A HLP+G+++V PVVRLFKPFDEL VD KDF+V ALEKF++ SS P V +F+ +P Sbjct: 197 TLDAKHLPQGESSVTGPVVRLFKPFDELFVDFKDFNVDALEKFVEESSMPVVTVFNSDPS 256 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHP+++KFF S KAMLF+NF+ +S KS Y +F G+ + L+GD+E+SQGAF Sbjct: 257 NHPFVIKFFNSPDAKAMLFMNFNGEAADSIKSKYQEVAHQFKGEGIILLLGDVEASQGAF 316 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKL 542 QYFGLK DQ PLI+IQ D +K+LK ++E I W+K Y +GK+ Sbjct: 317 QYFGLKEDQVPLIIIQTNDGQKYLKANLEPDHIAPWVKAYKEGKV 361 Score = 24.3 bits (51), Expect(2) = 2e-49 Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = +1 Query: 13 AEKLRSDYDFG 45 A+KLRSDY+FG Sbjct: 185 ADKLRSDYEFG 195
>PDI2_ARATH (Q9SRG3) Probable protein disulfide-isomerase 2 precursor (EC| 5.3.4.1) (PDI 2) Length = 508 Score = 186 bits (473), Expect(2) = 8e-48 Identities = 93/165 (56%), Positives = 118/165 (71%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPD 227 T+ A LPRG++ VE P VRLFKPFDEL VDSKDF+ ALEKF+ SS P V +FD +P+ Sbjct: 194 TLDAKFLPRGES-VEGPAVRLFKPFDELFVDSKDFNGEALEKFVKESSIPLVTVFDSDPN 252 Query: 228 NHPYLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAF 407 NHPY+ KFF+S A KAM+F+NF+ E+ KS Y + + FL+GD ESSQGAF Sbjct: 253 NHPYVAKFFESPATKAMMFVNFTGATAEALKSKYREVATSNKDQSLAFLVGDAESSQGAF 312 Query: 408 QYFGLKVDQAPLILIQDGDSKKFLKEHVEAGQIVAWLKDYFDGKL 542 QYFGL+ Q PLI+IQ D+KK+LK +VE QI +W KD+ DGK+ Sbjct: 313 QYFGLEESQVPLIIIQTPDNKKYLKVNVEVDQIESWFKDFQDGKV 357 Score = 23.5 bits (49), Expect(2) = 8e-48 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +1 Query: 13 AEKLRSDYDF 42 AEKLR+DYDF Sbjct: 182 AEKLRADYDF 191
>PDIA1_BOVIN (P05307) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| (Prolyl 4-hydroxylase beta subunit) (Cellular thyroid hormone-binding protein) (p55) Length = 510 Score = 42.4 bits (98), Expect = 9e-04 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 14/166 (8%) Frame = +3 Query: 87 VERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSNA 266 +++ V LFK FDE F + K++ F K+ + P +++F + A Sbjct: 200 LDKDGVVLFKKFDE-----------GRNNFEGEVTKEKLLDFIKH-NQLPLVIEFTEQTA 247 Query: 267 PKA---------MLFLNFSTGPFESFKSAYYGAVEEFSGKDV-KFLIGDIESSQGAFQYF 416 PK +LFL S +E S + A E F GK + F+ D +Q ++F Sbjct: 248 PKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGKILFIFIDSDHTDNQRILEFF 307 Query: 417 GLKVDQAP---LILIQDGDSK-KFLKEHVEAGQIVAWLKDYFDGKL 542 GLK ++ P LI +++ +K K + + A +I + + +GK+ Sbjct: 308 GLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353
>PDIA1_MOUSE (P09103) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| (Prolyl 4-hydroxylase beta subunit) (Cellular thyroid hormone-binding protein) (p55) (Erp59) Length = 509 Score = 41.6 bits (96), Expect = 0.001 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 14/166 (8%) Frame = +3 Query: 87 VERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSNA 266 +++ V LFK FDE F + K++ F K+ + P +++F + A Sbjct: 200 LDKDGVVLFKKFDE-----------GRNNFEGEITKEKLLDFIKH-NQLPLVIEFTEQTA 247 Query: 267 PKA---------MLFLNFSTGPFESFKSAYYGAVEEFSGKDV-KFLIGDIESSQGAFQYF 416 PK +LFL S ++ S++ A E F GK + F+ D +Q ++F Sbjct: 248 PKIFGGEIKTHILLFLPKSVSDYDGKLSSFKRAAEGFKGKILFIFIDSDHTDNQRILEFF 307 Query: 417 GLKVDQAP---LILIQDGDSK-KFLKEHVEAGQIVAWLKDYFDGKL 542 GLK ++ P LI +++ +K K + + A +I + + +GK+ Sbjct: 308 GLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353
>PDIA1_PONPY (Q5R5B6) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| (Prolyl 4-hydroxylase beta subunit) Length = 508 Score = 40.4 bits (93), Expect = 0.003 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%) Frame = +3 Query: 87 VERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSNA 266 +++ V LFK FDE F + ++ F K+ + P +++F + A Sbjct: 198 LDKDGVVLFKKFDE-----------GRNNFEGEVTKENLLDFIKH-NQLPLVIEFTEQTA 245 Query: 267 PKA---------MLFLNFSTGPFESFKSAYYGAVEEFSGKDV-KFLIGDIESSQGAFQYF 416 PK +LFL S ++ S + A E F GK + F+ D +Q ++F Sbjct: 246 PKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFF 305 Query: 417 GLKVDQAP---LILIQDGDSK-KFLKEHVEAGQIVAWLKDYFDGKL 542 GLK ++ P LI +++ +K K E + A +I + + +GK+ Sbjct: 306 GLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 351
>PDIA1_HUMAN (P07237) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| (Prolyl 4-hydroxylase beta subunit) (Cellular thyroid hormone-binding protein) (p55) Length = 508 Score = 40.4 bits (93), Expect = 0.003 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%) Frame = +3 Query: 87 VERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSNA 266 +++ V LFK FDE F + ++ F K+ + P +++F + A Sbjct: 198 LDKDGVVLFKKFDE-----------GRNNFEGEVTKENLLDFIKH-NQLPLVIEFTEQTA 245 Query: 267 PKA---------MLFLNFSTGPFESFKSAYYGAVEEFSGKDV-KFLIGDIESSQGAFQYF 416 PK +LFL S ++ S + A E F GK + F+ D +Q ++F Sbjct: 246 PKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFF 305 Query: 417 GLKVDQAP---LILIQDGDSK-KFLKEHVEAGQIVAWLKDYFDGKL 542 GLK ++ P LI +++ +K K E + A +I + + +GK+ Sbjct: 306 GLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 351
>PDI_HUMIN (P55059) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 505 Score = 38.1 bits (87), Expect(2) = 0.005 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Frame = +3 Query: 87 VERPVVRLFKPFDE-LVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSN 263 V+ P + L+K FDE V S+ F+V A+EKF +TP +I + P+ + + + Sbjct: 191 VKAPAIVLYKDFDEGKAVFSEKFEVEAIEKFAKTGATP--LIGEIGPETYS---DYMSAG 245 Query: 264 APKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAFQYFGLKVDQAPL 443 P A +F T S + E + F D ++ LK D+ P Sbjct: 246 IPLAYIFA--ETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPA 303 Query: 444 ILIQD-GDSKKF---LKEHVEAGQIVAWLKDYFDGKL 542 IQ+ ++KF ++ + I A++ D+ GK+ Sbjct: 304 FAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI 340 Score = 20.8 bits (42), Expect(2) = 0.005 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +1 Query: 13 AEKLRSDYDFG 45 AEKLR +Y FG Sbjct: 168 AEKLRDNYPFG 178
>PDI2_CAEEL (Q17770) Protein disulfide-isomerase 2 precursor (EC 5.3.4.1) (PDI| 1) (Prolyl 4-hydroxylase beta subunit) Length = 493 Score = 39.7 bits (91), Expect = 0.006 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 6/151 (3%) Frame = +3 Query: 108 LFKPFDE-LVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSNAPKAMLF 284 LFK FD+ V + L+ +I A+ V F + + + + N +LF Sbjct: 201 LFKKFDDGRVAFDEKLTQDGLKTWIQANRLALVSEFTQETASVIFGGEIKSHN----LLF 256 Query: 285 LNFSTGPFESFKSAYYGAVEEFSGKDVKFLIG-DIESSQGAFQYFGLKVDQAPLI--LIQ 455 ++ + F + + A ++F GK + I D+E + ++FGLK D+ P I + Sbjct: 257 VSKESSEFAKLEQEFKNAAKQFKGKVLFVYINTDVEENARIMEFFGLKKDELPAIRLISL 316 Query: 456 DGDSKKFLK--EHVEAGQIVAWLKDYFDGKL 542 + D KF E + I + ++Y DG + Sbjct: 317 EEDMTKFKPDFEEITTENISKFTQNYLDGSV 347
>PDIA2_HUMAN (Q13087) Protein disulfide-isomerase A2 precursor (EC 5.3.4.1)| (PDIp) Length = 525 Score = 38.1 bits (87), Expect = 0.016 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 7/147 (4%) Frame = +3 Query: 93 RPVVRLFKPFDE-----LVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQ 257 + V LFK FDE V + D+ L +F+ S V F+ + + Sbjct: 218 KDTVVLFKKFDEGRADFPVDEELGLDLGDLSRFLVTHSMRLVTEFNSQTSAKIFAARILN 277 Query: 258 SNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIES-SQGAFQYFGLKVDQ 434 +LF+N + + + A F G+ V F++ D+ + ++ QYFGLK + Sbjct: 278 H----LLLFVNQTLAAHRELLAGFGEAAPRFRGQ-VLFVVVDVAADNEHVLQYFGLKAEA 332 Query: 435 AP-LILIQDGDSKKFLKEHVEAGQIVA 512 AP L L+ +KK+ V+ G + A Sbjct: 333 APTLRLVNLETTKKYAP--VDGGPVTA 357
>PDIA2_PONPY (Q5RCH2) Protein disulfide-isomerase A2 precursor (EC 5.3.4.1)| Length = 525 Score = 35.8 bits (81), Expect = 0.081 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Frame = +3 Query: 93 RPVVRLFKPFDE-----LVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQ 257 + V LFK FDE V + D+ L +F+ S V F+ + + Sbjct: 218 KDTVVLFKKFDEGRADFPVDEELGLDLGDLSRFLVTHSMRLVTEFNSQTSAKIFAARILN 277 Query: 258 SNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSGKDVKFLIGDIES-SQGAFQYFGLKVDQ 434 +LF+N + + A F G+ V F++ D+ + ++ QYFGLK + Sbjct: 278 H----LLLFVNQTLAAHRELLVGFGEAAPHFRGQ-VLFVVVDVAADNEHVLQYFGLKAEA 332 Query: 435 APLILIQDGDSKK 473 AP + + + ++ K Sbjct: 333 APTLRLVNLETTK 345
>SYFB_THEMA (Q9WZS9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 788 Score = 32.0 bits (71), Expect = 1.2 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = -3 Query: 443 KWCLVDFQPKVLESPLARFNVTN*ELDILATELLYSTIVG*FEGLKRSSGEVQKEHGLGS 264 KW LVD +P L +P+A ++D++ T YS I E KR + ++ K +G Sbjct: 519 KWPLVDREPIALSNPIAS------DMDVMRTSQFYSLIQVLAENFKRQNRDL-KLFEIGK 571 Query: 263 IALEE---FQEV 237 I +E F+E+ Sbjct: 572 IYFKENGNFREI 583
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 72 RGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYL 242 RGD ++ PV LF +V+D K D + +E ++ + + + PD HPY+ Sbjct: 612 RGDLSISAPVKILFS---NIVLDGKTLDSAVVE-----TTLGRAIFNEALPDGHPYI 660
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 72 RGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYL 242 RGD ++ PV LF +V+D K D + +E ++ + + + PD HPY+ Sbjct: 612 RGDLSISAPVKILFS---NIVLDGKTLDSAVVE-----TTLGRAIFNEALPDGHPYI 660
>ATG22_YEAST (P25568) Autophagy-related protein 22| Length = 528 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -1 Query: 274 ALGALLWKNFKRYGWLSGFLS 212 ALG L WKN+ YGW+S F S Sbjct: 289 ALGQLNWKNYLSYGWVSLFES 309
>Y331_MYCGE (P47573) Hypothetical protein MG331| Length = 212 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Frame = +3 Query: 105 RLFKPFDELVVDSKDFDVSALEKFID-----------ASSTPKVVIFDKNPDNHPYLLKF 251 +LFK EL+VD K+ D LE+ +D +S + DK + +L KF Sbjct: 68 KLFKTLQELIVDLKNTDFKLLEEKVDRMWLNAAYNQTSSGYESWISDDKGIEKINHLSKF 127 Query: 252 FQSN 263 +++N Sbjct: 128 YEAN 131
>IL6RA_HUMAN (P08887) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (Membrane glycoprotein 80) (gp80) (CD126 antigen) Length = 468 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -1 Query: 439 GAWSTFSPKYWKAPWLDSMS-PIRNLTSLPLNSST 338 G WS +SP+ PW +S S P N S P+ + T Sbjct: 301 GEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALT 335
>POL1_TORVR (P29150) RNA1 polyprotein (P1) [Contains: X1 protein; X2 protein;| Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (Membrane-binding protein); Viral genome-linked protein (VPg); Picornain 3C-like protease (EC 3.4.22.-) Length = 2197 Score = 29.6 bits (65), Expect = 5.8 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = +3 Query: 201 VVIFDKNPDNHPYLLKFFQSNAPKAMLFLNFSTGP-----FESFKSAYYGAVEEFSGKDV 365 +V D N + L FFQ P FL F G SA GA + + KDV Sbjct: 1296 IVYTDNNGNTKAPLTHFFQPTGPNGEHFLRFFNGTEVCIYSHPQLSALPGAPQNYFLKDV 1355 Query: 366 KFLIGDI 386 + + GDI Sbjct: 1356 EKISGDI 1362
>MAL1_DROME (P07191) Probable maltase D precursor (EC 3.2.1.20) (Larval| visceral protein D) Length = 567 Score = 29.6 bits (65), Expect = 5.8 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Frame = +3 Query: 96 PVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSNAPKA 275 P+ + FD+L+V++K V + F+ S+ + V F+K+ + F+ + K Sbjct: 95 PIFGTLEDFDDLIVEAKSLGVKIILDFVPNHSSDENVWFEKSVNREDGYDDFYVWDDGK- 153 Query: 276 MLFLNFSTG---PFESFKSAYYGAVEEFSGKDVKFLIGDIESSQ 398 LN TG P ++ S + G + ++ K ++ + + Q Sbjct: 154 ---LNEETGARDPPSNWVSVFSGPMWTWNEKRQQYFLHQFQVKQ 194
>IOD2_CHICK (Q9IAX2) Type II iodothyronine deiodinase (EC 1.97.1.10) (Type-II| 5'deiodinase) (DIOII) (Type 2 DI) (5DII) Length = 279 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +3 Query: 237 YLLKFFQSNAPKAMLFLNFSTGPFESFKSAYYGAVEEFSG 356 +LL F S P + F + + PF S SA+ VEEFSG Sbjct: 112 HLLDFANSERPLVVNFGSATCPPFTSQLSAFSKLVEEFSG 151
>HBA_BRARE (Q90487) Hemoglobin alpha subunit (Hemoglobin alpha chain)| (Alpha-globin aa1) Length = 142 Score = 28.9 bits (63), Expect = 9.9 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Frame = -1 Query: 445 ISGAWSTFSPKYWKAPWLDSMSPIRNLTSLPLNSSTAP**ADLKDSNGPVEKFKKSM--A 272 + W+ SPK A + + + R LT P + ADL +GPV+K K++ A Sbjct: 10 VKAIWAKISPK---ADEIGAEALARMLTVYPQTKTYFSHWADLSPGSGPVKKHGKTIMGA 66 Query: 271 LGALLWKNFKRYGWLSGFLSKITTFGVLLASMNF 170 +G + K G L+ LS++ F + + NF Sbjct: 67 VGEAISKIDDLVGGLAA-LSELHAFKLRVDPANF 99
>YR880_MIMIV (Q5UQX8) Putative ankyrin repeat protein R880| Length = 255 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/44 (29%), Positives = 26/44 (59%) Frame = +3 Query: 48 TVHANHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFI 179 T+ + +G+ V R + +LF+ DELV+ +K F+ S + ++ Sbjct: 42 TIIKKIIKKGELGVIRYINKLFRVNDELVIGNKLFESSGINNYL 85
>FGD5_MOUSE (Q80UZ0) FYVE, RhoGEF and PH domain-containing protein 5| Length = 1219 Score = 28.9 bits (63), Expect = 9.9 Identities = 23/92 (25%), Positives = 37/92 (40%) Frame = +3 Query: 60 NHLPRGDAAVERPVVRLFKPFDELVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPY 239 +HLP + VV + PFD + K S+ ID + K K+ Sbjct: 354 SHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLIDGDTLEKASKKKKSSFKRFL 413 Query: 240 LLKFFQSNAPKAMLFLNFSTGPFESFKSAYYG 335 L F + K + +N S+ S +S+Y+G Sbjct: 414 ELTFRKKTESKVHVDMNLSSSR-SSSESSYHG 444
>PDI_ASPNG (Q12730) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)| Length = 515 Score = 28.9 bits (63), Expect = 9.9 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 13/165 (7%) Frame = +3 Query: 87 VERPVVRLFKPFDE-LVVDSKDFDVSALEKFIDASSTPKVVIFDKNPDNHPYLLKFFQSN 263 VE+P + L+K FDE V + + A+ ++ ++STP ++ + P+ + + + Sbjct: 195 VEQPSIVLYKDFDEKKAVYDGEIEQEAIHSWVKSASTP--LVGEIGPETYS---GYIGAG 249 Query: 264 APKAMLFLNFS------TGPFESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAFQYFGLK 425 P A +F T F+ + GA+ I I++ L Sbjct: 250 VPLAYIFAETKEEREKYTEDFKPIAQKHKGAIN----------IATIDAKMFGAHAGNLN 299 Query: 426 VD--QAPLILIQD-GDSKKF---LKEHVEAGQIVAWLKDYFDGKL 542 +D + P IQD + K+ + + A ++ +++D DGK+ Sbjct: 300 LDSQKFPAFAIQDPAKNAKYPYDQAKELNADEVEKFIQDVLDGKV 344
>PEBA_SYNPX (Q7U4P7) 15,16-dihydrobiliverdin:ferredoxin oxidoreductase (EC| 1.3.7.2) Length = 235 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 306 FESFKSAYYGAVEEFSGKDVKFLIGDIESSQGAFQYFGLKVDQA 437 F +F AY+G +E S + GD+E Q A+ + + D A Sbjct: 164 FSAFLKAYWGLHDEASKEPSSISPGDVERLQNAYDVYSAERDPA 207
>CARA_BACHK (Q6HES7) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 365 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Frame = -3 Query: 254 EEFQEVRMVVRVLIKN------NNFRGAASINEFLQSRNIKILA 141 ++F+ + V LI N +NFR S+N++L+ RNI LA Sbjct: 66 DDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLA 109
>CARA_BACCR (Q819S2) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 365 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Frame = -3 Query: 254 EEFQEVRMVVRVLIKN------NNFRGAASINEFLQSRNIKILA 141 ++F+ + V LI N +NFR S+N++L+ RNI LA Sbjct: 66 DDFESIHPSVNGLIVNEICNHPSNFRNEISLNDYLKERNIPGLA 109
>CARA_BACC1 (Q732I2) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 365 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Frame = -3 Query: 254 EEFQEVRMVVRVLIKN------NNFRGAASINEFLQSRNIKILA 141 ++F+ + V LI N +NFR S+N++L+ RNI LA Sbjct: 66 DDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLA 109
>CARA_BACAN (Q81WF1) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 365 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Frame = -3 Query: 254 EEFQEVRMVVRVLIKN------NNFRGAASINEFLQSRNIKILA 141 ++F+ + V LI N +NFR S+N++L+ RNI LA Sbjct: 66 DDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLA 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,625,846 Number of Sequences: 219361 Number of extensions: 1689779 Number of successful extensions: 5468 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 5292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5465 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
