ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags27j08 |
|---|---|
| Clone Library Name | barley_pub |
>NCKX2_RAT (O54701) Sodium/potassium/calcium exchanger 2 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 2) (Retinal cone Na-Ca+K exchanger) Length = 670 Score = 32.0 bits (71), Expect = 1.0 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 322 LPRKQSKQVSTTPLSSS*KP-QSGNVGHSDEAREIRPEMEFDESED 188 LP S +V TP S + +P Q+GN+ HS EA + E E +D Sbjct: 419 LPNSTSTEVEMTPSSEASEPVQNGNLSHSIEAADAPQATETAEEDD 464
>UN112_DROME (Q9VZI3) Unc-112-related protein (Fermitin-1)| Length = 708 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +3 Query: 39 MGLLSNRVERSEIRPGDHIYTWR 107 +G+ +NR+ R ++ GDHI TWR Sbjct: 615 LGVANNRIMRMDLNTGDHIKTWR 637
>LRAT_HUMAN (O95237) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +3 Query: 417 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCK 518 +E V RRA LL GF Y + NCE F YC+ Sbjct: 138 NEEVARRAEKLL--GFTPYSLLWNNCEHFVTYCR 169
>HRSL3_RAT (P53817) HRAS-like suppressor 3 (H-rev 107 protein)| Length = 160 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 72 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 185 E +PGD I +R +Y SH IYVG V+H E+ Sbjct: 5 EPKPGDLIEIFRPMY--SHWAIYVGDGYVIHLAPPSEI 40
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +1 Query: 340 LSMECHQQFSLQNFVGEPAPLPNPTHQR 423 L + C + L+ +GEPAPLP PT Q+ Sbjct: 509 LCLNCQTKRLLEGSLGEPAPLPLPTPQQ 536
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 340 LSMECHQQFSLQNFVGEPAPLPNPTHQ 420 L + C + L+ +GEPAPLP PT Q Sbjct: 507 LCLNCQTKRLLEGSLGEPAPLPLPTPQ 533
>STAM1_HUMAN (Q92783) Signal transducing adapter molecule 1 (STAM-1)| Length = 539 Score = 30.0 bits (66), Expect = 4.0 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = -1 Query: 355 GTPYSKQ*REPLPR------KQSKQVSTTPLSSS*KPQSGNVGHSDEAREIRPEMEFDES 194 GT +K+ E L + K+ +Q STT + S H E R++R +F+ + Sbjct: 164 GTVANKKEEEDLAKAIELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAA 223 Query: 193 EDSTSFFRV-KWTTLLPPT*IPWWE 122 ED+ F+ + T+L + WW+ Sbjct: 224 EDNELTFKAGEIITVLDDSDPNWWK 248
>NADD_RHOBA (Q7UFN6) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 214 Score = 29.6 bits (65), Expect = 5.2 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 276 PAENHSLGMLGTLMKPVRSGQRWSLMNLKIQLP 178 P NH +G+LG PV G W + QLP Sbjct: 8 PQSNHGIGILGGSFDPVHVGHLWMAESALEQLP 40
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 29.6 bits (65), Expect = 5.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 340 LSMECHQQFSLQNFVGEPAPLPNPTHQR 423 L + C + L+ +GEP PLP PT Q+ Sbjct: 510 LCLNCQTKRLLEGSLGEPTPLPPPTSQQ 537
>HRSL3_PONPY (Q5R611) HRAS-like suppressor 3 (H-rev 107 protein homolog)| Length = 162 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +3 Query: 72 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 185 E +PGD I +R Y H IYVG VVH EV Sbjct: 7 EPKPGDLIEIFRPFYR--HWAIYVGDGYVVHLAPPSEV 42
>HRSL3_MOUSE (Q8R3U1) HRAS-like suppressor 3 (H-rev 107 protein)| Length = 162 Score = 29.3 bits (64), Expect = 6.8 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 72 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 185 E +PGD I +R +Y H IYVG V+H E+ Sbjct: 7 EPKPGDLIEIFRPMYR--HWAIYVGDGYVIHLAPPSEI 42
>HRSL3_HUMAN (P53816) HRAS-like suppressor 3 (H-rev 107 protein homolog)| (HREV107-3) (NY-REN-65 antigen) Length = 162 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +3 Query: 72 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 185 E +PGD I +R Y H IYVG VVH EV Sbjct: 7 EPKPGDLIEIFRPFYR--HWAIYVGDGYVVHLAPPSEV 42
>PGDS_BACSU (P96740) Gamma-DL-glutamyl hydrolase precursor (EC 3.4.19.-)| (Poly-gamma-glutamate depolymerase) (PGA depolymerase) Length = 413 Score = 29.3 bits (64), Expect = 6.8 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +3 Query: 48 LSNRVERSEIRPGDHIY---TWRAVYAYSHHGIYVGGSKVVHFTRKKEV 185 + +V I+PGD +Y T++ SH GIY G + + +R ++V Sbjct: 220 VGEKVAPQNIKPGDVVYFSNTYKT--GISHAGIYAGAGRFIQASRSEKV 266
>RL36_DAUCA (P52866) 60S ribosomal protein L36| Length = 106 Score = 29.3 bits (64), Expect = 6.8 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -1 Query: 382 RNFARKIAGGTPYSKQ*REPLPRKQSKQVSTTPLSSS*KPQSGNVGHSDEARE 224 RN R++AG PY K+ E L + K+ K + VGHS E++E Sbjct: 44 RNLIREVAGFXPYEKRITELLKVGKDKRAL--------KVRQEKVGHSQESKE 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,244,852 Number of Sequences: 219361 Number of extensions: 1646398 Number of successful extensions: 4803 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4666 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4803 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
